Query 039385
Match_columns 126
No_of_seqs 118 out of 1284
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.7 3.1E-17 6.8E-22 111.5 6.5 96 3-119 197-292 (294)
2 cd04641 CBS_pair_28 The CBS do 99.7 1.2E-16 2.6E-21 98.7 7.8 101 4-115 19-119 (120)
3 cd04618 CBS_pair_5 The CBS dom 99.7 2.6E-16 5.5E-21 94.5 7.6 78 4-115 19-97 (98)
4 COG3448 CBS-domain-containing 99.7 1.6E-16 3.6E-21 110.1 7.5 106 4-123 271-377 (382)
5 cd04603 CBS_pair_KefB_assoc Th 99.7 2.6E-16 5.7E-21 96.1 7.2 92 4-115 19-110 (111)
6 cd04619 CBS_pair_6 The CBS dom 99.7 2.7E-16 5.9E-21 96.4 7.0 96 3-115 18-113 (114)
7 cd04642 CBS_pair_29 The CBS do 99.6 3.9E-15 8.4E-20 92.7 7.2 108 4-116 19-126 (126)
8 cd04627 CBS_pair_14 The CBS do 99.6 1E-14 2.2E-19 90.4 8.3 103 3-114 18-121 (123)
9 cd04630 CBS_pair_17 The CBS do 99.6 5.5E-15 1.2E-19 90.4 6.9 95 3-115 18-113 (114)
10 cd04614 CBS_pair_1 The CBS dom 99.6 7.3E-15 1.6E-19 87.7 7.2 78 3-115 18-95 (96)
11 cd04596 CBS_pair_DRTGG_assoc T 99.6 1.4E-14 3E-19 87.8 7.9 89 3-115 19-107 (108)
12 cd04617 CBS_pair_4 The CBS dom 99.6 7.5E-15 1.6E-19 90.4 6.7 96 4-115 19-117 (118)
13 cd04801 CBS_pair_M50_like This 99.6 8.2E-15 1.8E-19 89.6 6.6 94 4-115 19-113 (114)
14 cd04593 CBS_pair_EriC_assoc_ba 99.6 1.3E-14 2.8E-19 88.8 6.9 95 3-115 18-114 (115)
15 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.2E-14 2.5E-19 90.0 6.5 105 3-115 19-123 (124)
16 cd04623 CBS_pair_10 The CBS do 99.6 1.5E-14 3.2E-19 87.9 6.8 95 3-115 18-112 (113)
17 cd04607 CBS_pair_NTP_transfera 99.6 2.2E-14 4.8E-19 87.5 7.3 94 3-115 19-112 (113)
18 cd04608 CBS_pair_PALP_assoc Th 99.5 4.3E-15 9.3E-20 92.6 3.6 96 4-117 20-124 (124)
19 cd04615 CBS_pair_2 The CBS dom 99.5 5.2E-14 1.1E-18 85.7 8.3 94 4-115 19-112 (113)
20 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 5E-14 1.1E-18 84.9 7.8 88 3-115 18-105 (106)
21 cd04606 CBS_pair_Mg_transporte 99.5 6.6E-14 1.4E-18 85.0 8.3 84 9-116 25-108 (109)
22 cd04643 CBS_pair_30 The CBS do 99.5 2.3E-14 4.9E-19 87.6 6.3 94 3-115 18-115 (116)
23 cd04803 CBS_pair_15 The CBS do 99.5 3.2E-14 6.9E-19 87.8 7.0 95 4-115 19-121 (122)
24 cd04629 CBS_pair_16 The CBS do 99.5 2.3E-14 5E-19 87.3 6.2 95 3-115 18-113 (114)
25 cd04590 CBS_pair_CorC_HlyC_ass 99.5 4.1E-14 8.8E-19 85.9 7.2 91 4-115 19-110 (111)
26 PRK07807 inosine 5-monophospha 99.5 5.6E-14 1.2E-18 105.0 9.3 93 4-120 115-207 (479)
27 cd04605 CBS_pair_MET2_assoc Th 99.5 6.1E-14 1.3E-18 85.0 7.8 91 3-115 19-109 (110)
28 cd04631 CBS_pair_18 The CBS do 99.5 6.3E-14 1.4E-18 86.8 7.5 95 4-115 19-124 (125)
29 cd04632 CBS_pair_19 The CBS do 99.5 8E-14 1.7E-18 86.8 8.0 96 3-115 18-127 (128)
30 cd04621 CBS_pair_8 The CBS dom 99.5 5.4E-14 1.2E-18 88.9 7.3 109 3-115 18-134 (135)
31 PRK10892 D-arabinose 5-phospha 99.5 5.5E-14 1.2E-18 100.8 8.1 94 4-116 230-323 (326)
32 COG4109 Predicted transcriptio 99.5 7.5E-14 1.6E-18 98.9 8.4 90 5-118 217-306 (432)
33 cd04601 CBS_pair_IMPDH This cd 99.5 1.2E-13 2.5E-18 83.6 8.1 89 4-115 20-109 (110)
34 cd04626 CBS_pair_13 The CBS do 99.5 7.3E-14 1.6E-18 84.9 7.2 92 4-115 19-110 (111)
35 cd04635 CBS_pair_22 The CBS do 99.5 1.3E-13 2.7E-18 85.1 8.3 95 4-115 19-121 (122)
36 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 6.7E-14 1.4E-18 84.6 6.8 90 3-115 19-108 (109)
37 PRK07107 inosine 5-monophospha 99.5 1.4E-13 3.1E-18 103.3 10.0 94 4-117 123-219 (502)
38 cd04640 CBS_pair_27 The CBS do 99.5 5.2E-14 1.1E-18 87.7 6.5 95 4-115 19-125 (126)
39 cd04586 CBS_pair_BON_assoc Thi 99.5 4E-14 8.6E-19 89.1 5.9 110 3-115 19-134 (135)
40 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 9.9E-14 2.1E-18 84.4 7.1 94 4-115 20-113 (114)
41 cd04639 CBS_pair_26 The CBS do 99.5 1.1E-13 2.3E-18 84.1 7.1 92 4-115 19-110 (111)
42 KOG1764 5'-AMP-activated prote 99.5 1.2E-13 2.6E-18 100.7 8.5 109 3-122 254-363 (381)
43 PRK11543 gutQ D-arabinose 5-ph 99.5 8.5E-14 1.8E-18 99.6 7.6 94 4-116 225-318 (321)
44 PF00571 CBS: CBS domain CBS d 99.5 2.1E-13 4.6E-18 73.8 7.3 53 66-118 4-56 (57)
45 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 1.4E-13 2.9E-18 83.5 7.2 92 4-115 19-110 (111)
46 cd04602 CBS_pair_IMPDH_2 This 99.5 1.6E-13 3.5E-18 83.9 7.6 90 3-115 19-113 (114)
47 cd04595 CBS_pair_DHH_polyA_Pol 99.5 1.6E-13 3.6E-18 83.2 7.4 91 3-115 19-109 (110)
48 cd04624 CBS_pair_11 The CBS do 99.5 1.4E-13 3.1E-18 83.6 7.1 93 4-115 19-111 (112)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.5 1.5E-13 3.3E-18 83.3 7.1 92 3-115 18-109 (110)
50 cd04585 CBS_pair_ACT_assoc2 Th 99.5 2E-13 4.3E-18 83.9 7.7 103 4-115 19-121 (122)
51 PRK15094 magnesium/cobalt effl 99.5 1.4E-13 3E-18 97.4 7.8 99 4-122 95-193 (292)
52 cd04625 CBS_pair_12 The CBS do 99.5 1.9E-13 4.2E-18 83.0 7.3 93 4-115 19-111 (112)
53 cd04610 CBS_pair_ParBc_assoc T 99.5 3.2E-13 7E-18 81.3 8.2 88 3-115 19-106 (107)
54 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 1.6E-13 3.4E-18 83.2 6.8 92 4-115 19-110 (111)
55 cd04587 CBS_pair_CAP-ED_DUF294 99.5 1.1E-13 2.4E-18 84.2 6.1 93 4-115 19-112 (113)
56 COG3620 Predicted transcriptio 99.5 8.6E-14 1.9E-18 88.7 5.5 96 3-119 90-185 (187)
57 cd04633 CBS_pair_20 The CBS do 99.5 2.7E-13 6E-18 83.4 7.6 93 4-115 19-120 (121)
58 cd04637 CBS_pair_24 The CBS do 99.5 4.2E-13 9E-18 82.8 8.2 95 3-115 18-121 (122)
59 TIGR00400 mgtE Mg2+ transporte 99.5 4.2E-13 9.1E-18 100.0 9.6 95 7-125 165-259 (449)
60 cd04599 CBS_pair_GGDEF_assoc2 99.5 5.2E-13 1.1E-17 80.2 8.3 87 3-115 18-104 (105)
61 cd04620 CBS_pair_7 The CBS dom 99.5 2.4E-13 5.2E-18 83.1 6.8 93 4-115 19-114 (115)
62 cd04636 CBS_pair_23 The CBS do 99.5 1.8E-13 3.9E-18 85.8 6.0 107 3-115 18-131 (132)
63 COG2905 Predicted signal-trans 99.5 1.2E-13 2.5E-18 102.9 5.8 99 4-121 175-273 (610)
64 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.5E-13 7.5E-18 81.9 6.7 95 3-115 18-113 (114)
65 cd04622 CBS_pair_9 The CBS dom 99.4 3.4E-13 7.4E-18 82.0 6.7 93 4-115 19-112 (113)
66 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.4E-13 9.6E-18 80.7 6.9 86 3-115 18-103 (104)
67 PLN02274 inosine-5'-monophosph 99.4 1E-12 2.2E-17 98.9 10.0 96 4-119 126-223 (505)
68 TIGR03520 GldE gliding motilit 99.4 6.2E-13 1.3E-17 98.0 8.5 96 4-121 219-314 (408)
69 PRK01862 putative voltage-gate 99.4 6.3E-13 1.4E-17 101.7 8.6 98 4-119 473-572 (574)
70 cd04800 CBS_pair_CAP-ED_DUF294 99.4 7.5E-13 1.6E-17 80.3 7.3 91 4-115 19-110 (111)
71 cd04591 CBS_pair_EriC_assoc_eu 99.4 5.2E-13 1.1E-17 80.9 6.6 82 4-115 20-104 (105)
72 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.2E-12 2.6E-17 97.8 9.3 92 4-120 114-205 (475)
73 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.2E-12 2.6E-17 80.5 7.0 95 3-115 18-120 (121)
74 cd04589 CBS_pair_CAP-ED_DUF294 99.4 1.3E-12 2.8E-17 79.3 6.7 92 4-115 19-110 (111)
75 cd04802 CBS_pair_3 The CBS dom 99.4 1.7E-12 3.7E-17 78.8 7.2 94 3-115 18-111 (112)
76 TIGR01302 IMP_dehydrog inosine 99.4 1.4E-12 2.9E-17 97.3 8.0 93 3-118 105-201 (450)
77 PTZ00314 inosine-5'-monophosph 99.4 1.3E-12 2.9E-17 98.2 7.8 93 3-117 121-217 (495)
78 cd02205 CBS_pair The CBS domai 99.4 1.5E-12 3.2E-17 78.3 6.7 95 3-115 18-112 (113)
79 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.3E-12 2.8E-17 78.9 6.0 92 3-115 18-109 (110)
80 PRK05567 inosine 5'-monophosph 99.4 3.4E-12 7.4E-17 96.0 8.7 92 4-118 113-205 (486)
81 cd04638 CBS_pair_25 The CBS do 99.3 1.2E-11 2.6E-16 74.5 8.1 87 4-115 19-105 (106)
82 cd04598 CBS_pair_GGDEF_assoc T 99.3 9.9E-12 2.2E-16 76.2 7.6 94 4-115 19-118 (119)
83 cd04634 CBS_pair_21 The CBS do 99.3 1.4E-11 3E-16 78.5 7.5 108 4-115 19-142 (143)
84 COG2239 MgtE Mg/Co/Ni transpor 99.3 1.3E-11 2.9E-16 91.4 8.4 96 6-125 165-260 (451)
85 TIGR00393 kpsF KpsF/GutQ famil 99.3 9.1E-12 2E-16 87.0 6.9 88 3-109 181-268 (268)
86 COG0517 FOG: CBS domain [Gener 99.3 1.1E-11 2.4E-16 75.6 6.5 91 4-114 25-117 (117)
87 PRK11573 hypothetical protein; 99.2 6.9E-11 1.5E-15 87.3 8.8 101 4-122 215-315 (413)
88 PRK14869 putative manganese-de 99.2 3.6E-11 7.8E-16 91.6 6.8 54 65-118 250-304 (546)
89 TIGR01137 cysta_beta cystathio 99.1 1.7E-10 3.6E-15 86.2 7.0 93 4-117 361-453 (454)
90 COG1253 TlyC Hemolysins and re 99.1 2.3E-10 4.9E-15 85.0 7.1 99 4-122 234-332 (429)
91 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.4E-10 3.1E-15 73.2 4.9 91 4-102 19-119 (133)
92 PRK10070 glycine betaine trans 99.0 2.7E-09 5.8E-14 78.6 8.2 93 4-120 303-395 (400)
93 TIGR01186 proV glycine betaine 98.9 4.2E-09 9.2E-14 76.7 8.0 92 5-120 269-360 (363)
94 COG3448 CBS-domain-containing 98.8 3.6E-09 7.8E-14 74.0 4.4 55 63-117 247-301 (382)
95 cd04618 CBS_pair_5 The CBS dom 98.8 1.9E-08 4.1E-13 60.1 6.5 48 70-117 2-50 (98)
96 KOG2550 IMP dehydrogenase/GMP 98.8 9.1E-09 2E-13 74.7 5.6 91 4-116 134-226 (503)
97 smart00116 CBS Domain in cysta 98.8 3E-08 6.5E-13 50.5 6.0 47 71-117 2-48 (49)
98 cd04597 CBS_pair_DRTGG_assoc2 98.8 1.9E-08 4E-13 61.7 6.0 50 66-115 63-112 (113)
99 cd04641 CBS_pair_28 The CBS do 98.8 3.1E-08 6.8E-13 60.8 7.1 49 70-118 2-50 (120)
100 cd04592 CBS_pair_EriC_assoc_eu 98.8 4.1E-08 8.8E-13 62.0 7.4 50 70-119 2-51 (133)
101 COG3620 Predicted transcriptio 98.8 1.3E-08 2.8E-13 65.3 4.9 56 64-120 68-123 (187)
102 COG2524 Predicted transcriptio 98.8 2.1E-08 4.5E-13 68.9 5.9 54 66-120 177-230 (294)
103 cd04614 CBS_pair_1 The CBS dom 98.7 5.7E-08 1.2E-12 57.7 6.5 47 70-116 2-48 (96)
104 cd04608 CBS_pair_PALP_assoc Th 98.7 1.1E-07 2.5E-12 59.0 7.8 51 69-119 2-52 (124)
105 cd04643 CBS_pair_30 The CBS do 98.7 1E-07 2.3E-12 57.8 7.0 49 70-118 2-50 (116)
106 COG4536 CorB Putative Mg2+ and 98.7 3.1E-08 6.7E-13 71.3 5.0 99 6-122 230-328 (423)
107 cd04605 CBS_pair_MET2_assoc Th 98.7 2.2E-07 4.7E-12 55.9 7.5 50 69-118 2-51 (110)
108 cd04627 CBS_pair_14 The CBS do 98.6 1.7E-07 3.8E-12 57.7 7.0 49 70-118 2-51 (123)
109 cd04623 CBS_pair_10 The CBS do 98.6 2.3E-07 5E-12 55.9 7.4 50 70-119 2-51 (113)
110 cd04624 CBS_pair_11 The CBS do 98.6 2.5E-07 5.5E-12 55.8 7.3 50 70-119 2-51 (112)
111 cd04619 CBS_pair_6 The CBS dom 98.6 3.2E-07 6.9E-12 55.8 7.5 49 70-118 2-50 (114)
112 cd04582 CBS_pair_ABC_OpuCA_ass 98.6 2.4E-07 5.1E-12 55.4 6.8 48 70-117 2-49 (106)
113 cd04617 CBS_pair_4 The CBS dom 98.6 3.2E-07 7E-12 56.1 7.4 49 70-118 2-50 (118)
114 cd04600 CBS_pair_HPP_assoc Thi 98.6 2.9E-07 6.3E-12 56.5 7.0 51 69-119 2-52 (124)
115 PRK14869 putative manganese-de 98.6 2E-07 4.3E-12 71.3 7.2 56 65-120 72-127 (546)
116 cd04586 CBS_pair_BON_assoc Thi 98.6 2.5E-07 5.4E-12 57.9 6.5 49 69-117 2-50 (135)
117 cd04801 CBS_pair_M50_like This 98.6 3.3E-07 7.2E-12 55.6 6.8 49 70-118 2-51 (114)
118 cd04632 CBS_pair_19 The CBS do 98.6 4.4E-07 9.4E-12 56.2 7.3 48 70-117 2-49 (128)
119 cd04613 CBS_pair_SpoIVFB_EriC_ 98.6 4E-07 8.7E-12 54.9 6.7 50 70-119 2-51 (114)
120 cd04621 CBS_pair_8 The CBS dom 98.6 3.4E-07 7.4E-12 57.7 6.6 49 70-118 2-50 (135)
121 cd04642 CBS_pair_29 The CBS do 98.6 3E-07 6.5E-12 56.9 6.2 49 70-118 2-50 (126)
122 cd04630 CBS_pair_17 The CBS do 98.6 6E-07 1.3E-11 54.5 7.4 48 70-117 2-50 (114)
123 cd04639 CBS_pair_26 The CBS do 98.5 4E-07 8.7E-12 54.8 6.5 49 70-118 2-50 (111)
124 cd04593 CBS_pair_EriC_assoc_ba 98.5 5.4E-07 1.2E-11 54.7 7.1 49 70-118 2-50 (115)
125 cd04629 CBS_pair_16 The CBS do 98.5 4E-07 8.7E-12 55.0 6.2 49 70-118 2-50 (114)
126 cd04590 CBS_pair_CorC_HlyC_ass 98.5 7.3E-07 1.6E-11 53.7 7.3 51 70-120 2-53 (111)
127 cd04803 CBS_pair_15 The CBS do 98.5 4.6E-07 9.9E-12 55.5 6.5 49 70-118 2-50 (122)
128 KOG1764 5'-AMP-activated prote 98.5 2E-07 4.3E-12 68.4 5.3 108 4-119 180-287 (381)
129 cd04636 CBS_pair_23 The CBS do 98.5 4.2E-07 9.1E-12 56.7 6.1 50 70-119 2-51 (132)
130 cd04631 CBS_pair_18 The CBS do 98.5 5.2E-07 1.1E-11 55.5 6.3 50 70-119 2-52 (125)
131 cd02205 CBS_pair The CBS domai 98.5 1E-06 2.2E-11 52.4 7.4 52 70-121 2-53 (113)
132 cd04596 CBS_pair_DRTGG_assoc T 98.5 4.1E-07 8.8E-12 54.7 5.5 47 70-116 3-49 (108)
133 cd04603 CBS_pair_KefB_assoc Th 98.5 8.6E-07 1.9E-11 53.7 7.0 47 70-116 2-48 (111)
134 cd04640 CBS_pair_27 The CBS do 98.5 7.9E-07 1.7E-11 55.1 6.7 46 70-115 2-47 (126)
135 cd04635 CBS_pair_22 The CBS do 98.5 5.7E-07 1.2E-11 55.1 6.0 47 70-116 2-48 (122)
136 cd04626 CBS_pair_13 The CBS do 98.5 1E-06 2.2E-11 53.1 7.0 49 70-118 2-50 (111)
137 PRK10892 D-arabinose 5-phospha 98.5 5.6E-07 1.2E-11 64.7 6.6 54 65-118 206-261 (326)
138 cd04615 CBS_pair_2 The CBS dom 98.5 1.2E-06 2.7E-11 52.8 7.2 48 70-117 2-49 (113)
139 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 1.3E-06 2.8E-11 52.3 7.2 48 70-117 3-50 (109)
140 cd04609 CBS_pair_PALP_assoc2 T 98.5 9.6E-07 2.1E-11 52.9 6.6 49 70-119 2-50 (110)
141 cd04588 CBS_pair_CAP-ED_DUF294 98.5 1.2E-06 2.7E-11 52.6 7.1 48 70-118 2-49 (110)
142 PRK11543 gutQ D-arabinose 5-ph 98.5 5.9E-07 1.3E-11 64.4 6.5 54 65-118 201-256 (321)
143 COG4535 CorC Putative Mg2+ and 98.4 1.7E-07 3.7E-12 63.9 3.3 99 4-122 95-193 (293)
144 cd04637 CBS_pair_24 The CBS do 98.4 1.8E-06 3.9E-11 52.9 7.3 48 70-118 2-49 (122)
145 cd04634 CBS_pair_21 The CBS do 98.4 1.1E-06 2.4E-11 55.7 6.5 49 70-119 2-50 (143)
146 cd04585 CBS_pair_ACT_assoc2 Th 98.4 1.3E-06 2.9E-11 53.1 6.5 48 70-118 2-49 (122)
147 cd04612 CBS_pair_SpoIVFB_EriC_ 98.4 1.5E-06 3.2E-11 52.2 6.5 49 70-119 2-50 (111)
148 cd04584 CBS_pair_ACT_assoc Thi 98.4 1.6E-06 3.4E-11 52.9 6.7 49 70-118 2-50 (121)
149 cd04607 CBS_pair_NTP_transfera 98.4 2.1E-06 4.5E-11 51.9 7.0 48 71-118 4-51 (113)
150 cd04595 CBS_pair_DHH_polyA_Pol 98.4 2.4E-06 5.2E-11 51.4 6.9 49 69-118 2-50 (110)
151 cd04800 CBS_pair_CAP-ED_DUF294 98.4 2.4E-06 5.2E-11 51.4 6.9 47 70-117 2-48 (111)
152 PRK15094 magnesium/cobalt effl 98.4 1.8E-06 3.9E-11 61.4 7.2 71 47-118 54-127 (292)
153 TIGR01137 cysta_beta cystathio 98.4 1.7E-06 3.8E-11 64.7 7.3 53 66-118 340-392 (454)
154 cd04633 CBS_pair_20 The CBS do 98.3 2.4E-06 5.2E-11 52.2 6.6 48 70-118 2-49 (121)
155 TIGR03520 GldE gliding motilit 98.3 2.4E-06 5.1E-11 63.4 7.6 71 47-118 178-251 (408)
156 cd04587 CBS_pair_CAP-ED_DUF294 98.3 3.4E-06 7.4E-11 50.8 7.1 47 70-117 2-48 (113)
157 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 2.1E-06 4.5E-11 51.8 6.1 50 70-119 3-52 (114)
158 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 3.2E-06 7E-11 50.7 6.9 48 70-118 2-49 (111)
159 cd04589 CBS_pair_CAP-ED_DUF294 98.3 3.8E-06 8.2E-11 50.6 7.1 48 70-118 2-49 (111)
160 TIGR00393 kpsF KpsF/GutQ famil 98.3 1.5E-06 3.2E-11 60.8 5.8 54 65-118 159-213 (268)
161 cd04598 CBS_pair_GGDEF_assoc T 98.3 2.6E-06 5.7E-11 51.8 6.3 48 70-118 2-50 (119)
162 cd04622 CBS_pair_9 The CBS dom 98.3 3.1E-06 6.8E-11 51.0 6.4 45 70-115 2-46 (113)
163 PRK07807 inosine 5-monophospha 98.3 5.1E-06 1.1E-10 62.7 8.2 50 66-115 94-143 (479)
164 cd04599 CBS_pair_GGDEF_assoc2 98.3 4.4E-06 9.6E-11 49.6 6.2 46 70-116 2-47 (105)
165 cd04802 CBS_pair_3 The CBS dom 98.3 7E-06 1.5E-10 49.4 7.1 47 70-117 2-48 (112)
166 cd04601 CBS_pair_IMPDH This cd 98.2 3.7E-06 8E-11 50.3 5.6 46 70-115 3-48 (110)
167 PRK05567 inosine 5'-monophosph 98.2 5.7E-06 1.2E-10 62.7 7.7 50 66-115 92-141 (486)
168 TIGR01302 IMP_dehydrog inosine 98.2 7.5E-06 1.6E-10 61.5 8.2 51 66-116 85-138 (450)
169 PRK01862 putative voltage-gate 98.2 3.2E-06 7E-11 65.1 6.4 52 66-117 452-503 (574)
170 cd04594 CBS_pair_EriC_assoc_ar 98.2 8E-06 1.7E-10 48.8 6.5 44 72-116 4-47 (104)
171 cd04602 CBS_pair_IMPDH_2 This 98.2 7.5E-06 1.6E-10 49.6 6.2 46 70-115 3-51 (114)
172 TIGR00400 mgtE Mg2+ transporte 98.2 1.2E-05 2.6E-10 60.4 8.2 66 49-115 120-190 (449)
173 cd04606 CBS_pair_Mg_transporte 98.2 4.6E-06 1E-10 50.1 4.9 42 74-115 2-48 (109)
174 COG0517 FOG: CBS domain [Gener 98.2 1.5E-05 3.2E-10 48.2 7.2 53 67-120 5-57 (117)
175 COG2239 MgtE Mg/Co/Ni transpor 98.2 1E-05 2.2E-10 60.6 7.5 73 49-122 121-198 (451)
176 cd04620 CBS_pair_7 The CBS dom 98.2 1.3E-05 2.8E-10 48.5 6.8 48 70-118 2-50 (115)
177 cd04625 CBS_pair_12 The CBS do 98.1 1.9E-05 4.1E-10 47.5 7.3 48 70-118 2-49 (112)
178 PLN02274 inosine-5'-monophosph 98.1 1.7E-05 3.7E-10 60.3 8.0 49 67-115 106-157 (505)
179 cd04610 CBS_pair_ParBc_assoc T 98.1 1.5E-05 3.3E-10 47.4 6.3 46 69-115 2-47 (107)
180 cd04638 CBS_pair_25 The CBS do 98.1 2.2E-05 4.7E-10 46.9 6.9 47 70-116 2-48 (106)
181 PTZ00314 inosine-5'-monophosph 98.1 2.1E-05 4.5E-10 59.8 8.1 49 66-114 101-152 (495)
182 cd04591 CBS_pair_EriC_assoc_eu 98.1 1.6E-05 3.5E-10 47.7 6.3 49 70-118 3-54 (105)
183 KOG0475 Cl- channel CLC-3 and 98.0 1.4E-05 3E-10 61.2 5.7 114 4-118 575-695 (696)
184 COG2905 Predicted signal-trans 98.0 1.3E-05 2.7E-10 60.8 5.4 54 66-119 154-207 (610)
185 TIGR01303 IMP_DH_rel_1 IMP deh 97.9 6.7E-05 1.5E-09 56.7 7.7 48 66-114 93-140 (475)
186 KOG0474 Cl- channel CLC-7 and 97.9 8.5E-06 1.9E-10 62.4 2.2 112 5-116 609-745 (762)
187 PRK07107 inosine 5-monophospha 97.7 8.8E-05 1.9E-09 56.5 5.7 45 71-115 107-154 (502)
188 PF00571 CBS: CBS domain CBS d 97.6 2.4E-05 5.1E-10 41.7 0.9 30 3-33 24-53 (57)
189 PRK11573 hypothetical protein; 97.5 0.00043 9.2E-09 51.6 7.2 91 25-117 153-246 (413)
190 COG4175 ProV ABC-type proline/ 97.5 0.00039 8.4E-09 50.0 6.0 50 69-119 335-384 (386)
191 TIGR03415 ABC_choXWV_ATP choli 97.3 0.00073 1.6E-08 49.9 5.7 48 70-119 334-381 (382)
192 COG1253 TlyC Hemolysins and re 97.2 0.0034 7.5E-08 47.0 8.7 72 48-120 194-268 (429)
193 COG4109 Predicted transcriptio 97.1 0.00052 1.1E-08 49.7 3.3 55 66-120 193-249 (432)
194 PRK10070 glycine betaine trans 96.2 0.044 9.6E-07 40.9 8.1 44 74-117 290-333 (400)
195 smart00116 CBS Domain in cysta 96.1 0.0029 6.3E-08 31.3 1.1 29 3-32 17-45 (49)
196 COG1125 OpuBA ABC-type proline 95.9 0.019 4.1E-07 40.4 4.8 39 78-116 270-308 (309)
197 COG4535 CorC Putative Mg2+ and 95.8 0.008 1.7E-07 41.6 2.4 53 68-120 76-129 (293)
198 TIGR01186 proV glycine betaine 94.8 0.18 3.8E-06 37.2 7.0 48 70-117 251-298 (363)
199 KOG0476 Cl- channel CLC-2 and 94.0 0.12 2.6E-06 41.4 4.7 58 65-122 592-651 (931)
200 COG4536 CorB Putative Mg2+ and 93.5 0.063 1.4E-06 39.6 2.4 54 68-121 209-263 (423)
201 KOG2550 IMP dehydrogenase/GMP 92.5 0.11 2.4E-06 38.8 2.5 47 70-116 117-166 (503)
202 KOG0474 Cl- channel CLC-7 and 90.6 0.24 5.2E-06 39.0 2.6 59 64-122 585-648 (762)
203 KOG0476 Cl- channel CLC-2 and 90.1 0.71 1.5E-05 37.2 4.8 50 69-119 810-859 (931)
204 PF05198 IF3_N: Translation in 88.7 1.7 3.7E-05 24.7 4.6 28 92-119 12-39 (76)
205 PF14827 Cache_3: Sensory doma 80.7 2.2 4.8E-05 25.9 2.8 18 93-110 92-109 (116)
206 KOG0475 Cl- channel CLC-3 and 80.3 4.7 0.0001 32.1 5.0 49 71-119 558-609 (696)
207 COG4175 ProV ABC-type proline/ 73.9 2.2 4.7E-05 31.4 1.6 70 46-116 260-331 (386)
208 PF14044 NETI: NETI protein 73.6 5.2 0.00011 21.4 2.6 21 72-92 2-22 (57)
209 COG2216 KdpB High-affinity K+ 73.2 8.3 0.00018 30.3 4.5 43 79-122 414-457 (681)
210 PRK00028 infC translation init 72.7 5.7 0.00012 26.4 3.2 19 79-97 36-54 (177)
211 KOG2118 Predicted membrane pro 71.8 3.8 8.2E-05 31.7 2.6 93 6-118 235-328 (498)
212 PF13365 Trypsin_2: Trypsin-li 71.6 3.3 7.3E-05 24.5 1.9 19 89-107 102-120 (120)
213 CHL00199 infC translation init 67.2 8.9 0.00019 25.7 3.2 20 79-98 41-60 (182)
214 PF02743 Cache_1: Cache domain 64.8 9.8 0.00021 21.2 2.8 18 94-111 18-35 (81)
215 PF13673 Acetyltransf_10: Acet 63.0 19 0.0004 21.1 4.0 32 79-111 31-62 (117)
216 COG0290 InfC Translation initi 60.4 22 0.00047 23.6 4.0 29 91-119 17-45 (176)
217 PF00944 Peptidase_S3: Alphavi 57.3 12 0.00025 24.0 2.3 19 90-108 105-123 (158)
218 COG3290 CitA Signal transducti 55.6 8.4 0.00018 30.1 1.8 28 93-120 141-168 (537)
219 PF13098 Thioredoxin_2: Thiore 53.9 19 0.00042 21.1 2.9 36 82-117 73-112 (112)
220 PF03948 Ribosomal_L9_C: Ribos 53.9 10 0.00022 22.0 1.6 23 99-121 23-45 (87)
221 cd02958 UAS UAS family; UAS is 53.6 46 0.001 19.8 6.4 52 70-121 52-111 (114)
222 PRK00137 rplI 50S ribosomal pr 52.2 41 0.00088 21.6 4.3 23 98-120 83-105 (147)
223 PHA00673 acetyltransferase dom 50.6 47 0.001 21.6 4.4 34 78-111 40-73 (154)
224 TIGR00158 L9 ribosomal protein 48.1 50 0.0011 21.2 4.3 22 98-119 83-104 (148)
225 PRK11388 DNA-binding transcrip 46.9 58 0.0013 25.9 5.3 85 4-107 140-228 (638)
226 PF13596 PAS_10: PAS domain; P 45.4 20 0.00044 20.9 2.0 17 92-108 83-99 (106)
227 smart00481 POLIIIAc DNA polyme 45.2 48 0.001 17.6 3.5 38 75-113 12-49 (67)
228 PF12396 DUF3659: Protein of u 44.3 18 0.00039 19.8 1.5 21 13-34 14-34 (64)
229 PLN02552 isopentenyl-diphospha 44.1 33 0.00072 24.1 3.2 21 93-113 23-43 (247)
230 CHL00160 rpl9 ribosomal protei 43.0 27 0.0006 22.6 2.5 23 98-120 89-111 (153)
231 TIGR02038 protease_degS peripl 42.0 23 0.00049 26.1 2.2 21 90-110 197-217 (351)
232 PF10049 DUF2283: Protein of u 41.6 23 0.00049 18.2 1.6 10 98-107 35-44 (50)
233 PRK15393 NUDIX hydrolase YfcD; 40.7 49 0.0011 21.7 3.5 25 91-115 8-32 (180)
234 PF11141 DUF2914: Protein of u 40.3 50 0.0011 18.0 2.9 21 89-109 42-62 (66)
235 PRK10898 serine endoprotease; 39.5 27 0.00058 25.8 2.3 22 89-110 196-217 (353)
236 PF10879 DUF2674: Protein of u 38.7 54 0.0012 17.4 2.7 40 70-109 7-46 (67)
237 PF13508 Acetyltransf_7: Acety 38.0 33 0.00071 18.7 2.1 18 93-110 3-20 (79)
238 COG0241 HisB Histidinol phosph 37.4 1.2E+02 0.0026 20.3 4.9 40 77-116 33-72 (181)
239 PF09308 LuxQ-periplasm: LuxQ, 37.0 35 0.00075 23.9 2.3 25 9-33 129-153 (238)
240 COG1720 Uncharacterized conser 36.3 31 0.00068 22.5 1.9 31 1-31 59-91 (156)
241 smart00594 UAS UAS domain. 36.2 52 0.0011 20.0 2.9 48 70-117 62-121 (122)
242 PRK03972 ribosomal biogenesis 36.2 1.4E+02 0.0031 20.5 5.2 31 72-102 30-60 (208)
243 PF08275 Toprim_N: DNA primase 34.6 44 0.00096 20.7 2.4 19 93-111 79-97 (128)
244 PF12282 H_kinase_N: Signal tr 34.6 44 0.00095 21.3 2.4 19 92-111 106-124 (145)
245 COG1956 GAF domain-containing 34.4 41 0.00088 22.1 2.2 18 93-111 117-134 (163)
246 COG0853 PanD Aspartate 1-decar 34.1 43 0.00093 20.9 2.2 31 85-115 2-32 (126)
247 PF05239 PRC: PRC-barrel domai 33.4 55 0.0012 17.9 2.5 18 92-109 9-26 (79)
248 COG0828 RpsU Ribosomal protein 32.8 69 0.0015 17.8 2.7 19 71-89 3-21 (67)
249 PRK10140 putative acetyltransf 32.6 1.2E+02 0.0027 18.6 4.4 32 81-112 39-70 (162)
250 COG0359 RplI Ribosomal protein 32.0 49 0.0011 21.4 2.3 23 98-120 83-105 (148)
251 COG2216 KdpB High-affinity K+ 32.0 80 0.0017 25.1 3.7 26 7-34 425-450 (681)
252 COG4379 Mu-like prophage tail 31.6 1.5E+02 0.0033 22.1 4.9 64 40-104 107-176 (386)
253 PF00949 Peptidase_S7: Peptida 31.6 45 0.00098 21.1 2.1 19 90-108 96-114 (132)
254 cd03015 PRX_Typ2cys Peroxiredo 30.8 1.5E+02 0.0032 19.0 4.6 28 92-119 120-155 (173)
255 TIGR00223 panD L-aspartate-alp 30.6 50 0.0011 20.7 2.1 30 85-114 3-32 (126)
256 PRK10598 lipoprotein; Provisio 30.0 1.8E+02 0.0038 19.6 6.8 73 8-92 97-173 (186)
257 PRK13482 DNA integrity scannin 29.9 71 0.0015 23.8 3.1 32 72-103 10-41 (352)
258 COG5428 Uncharacterized conser 28.4 47 0.001 18.5 1.5 33 71-107 13-45 (69)
259 PF13420 Acetyltransf_4: Acety 28.4 1E+02 0.0023 18.9 3.4 34 79-112 36-70 (155)
260 TIGR03641 cas1_HMARI CRISPR-as 28.1 2.2E+02 0.0049 20.7 5.4 39 72-111 37-76 (322)
261 TIGR02037 degP_htrA_DO peripla 27.7 50 0.0011 24.9 2.1 19 91-109 179-197 (428)
262 COG1623 Predicted nucleic-acid 27.5 54 0.0012 23.9 2.1 36 72-107 16-51 (349)
263 PF02196 RBD: Raf-like Ras-bin 27.4 1E+02 0.0022 17.0 2.9 21 70-90 13-33 (71)
264 PRK05449 aspartate alpha-decar 27.0 63 0.0014 20.3 2.1 30 85-114 3-32 (126)
265 TIGR00104 YaeB_AF0241 probable 26.8 51 0.0011 21.1 1.7 31 1-31 56-90 (142)
266 PF08448 PAS_4: PAS fold; Int 26.7 67 0.0015 18.0 2.2 18 92-109 83-100 (110)
267 TIGR00287 cas1 CRISPR-associat 26.5 2.5E+02 0.0054 20.3 5.4 38 72-110 38-76 (323)
268 PRK10638 glutaredoxin 3; Provi 26.5 1.2E+02 0.0027 16.7 3.9 28 88-117 46-73 (83)
269 COG1832 Predicted CoA-binding 26.4 80 0.0017 20.2 2.5 28 72-99 24-51 (140)
270 PF13185 GAF_2: GAF domain; PD 26.1 84 0.0018 18.8 2.7 27 84-111 92-121 (148)
271 TIGR00030 S21p ribosomal prote 26.0 1.1E+02 0.0024 16.3 2.7 18 72-89 3-20 (58)
272 PRK10898 serine endoprotease; 25.8 77 0.0017 23.4 2.7 21 7-28 197-217 (353)
273 TIGR02038 protease_degS peripl 25.5 78 0.0017 23.3 2.7 21 7-28 197-217 (351)
274 COG3290 CitA Signal transducti 25.4 54 0.0012 25.8 1.9 22 10-32 141-162 (537)
275 PF08669 GCV_T_C: Glycine clea 25.1 82 0.0018 18.0 2.3 16 95-110 37-52 (95)
276 PRK13599 putative peroxiredoxi 25.0 2.3E+02 0.0049 19.3 4.7 47 73-119 96-154 (215)
277 cd06919 Asp_decarbox Aspartate 24.6 47 0.001 20.4 1.2 29 86-114 3-31 (111)
278 PRK09774 fec operon regulator 24.4 2.3E+02 0.005 20.5 4.9 46 70-116 244-292 (319)
279 PF09939 DUF2171: Uncharacteri 24.3 81 0.0018 17.5 2.0 18 93-110 4-21 (67)
280 PF14221 DUF4330: Domain of un 23.9 37 0.00081 22.3 0.7 19 13-32 2-20 (168)
281 cd03412 CbiK_N Anaerobic cobal 23.9 1.4E+02 0.0029 18.5 3.2 40 77-118 55-94 (127)
282 cd01760 RBD Ubiquitin-like dom 23.8 1.4E+02 0.0029 16.7 2.9 20 70-89 12-31 (72)
283 smart00434 TOP4c DNA Topoisome 23.6 56 0.0012 25.1 1.7 30 75-104 70-99 (445)
284 PF04459 DUF512: Protein of un 23.4 1.9E+02 0.0041 19.7 4.1 31 91-121 126-160 (204)
285 smart00455 RBD Raf-like Ras-bi 23.1 1.3E+02 0.0027 16.6 2.7 20 70-89 12-31 (70)
286 PF11275 DUF3077: Protein of u 22.4 1.1E+02 0.0024 17.5 2.4 19 69-87 15-33 (79)
287 PF13905 Thioredoxin_8: Thiore 22.2 1.3E+02 0.0029 16.7 2.9 25 80-104 71-95 (95)
288 cd03012 TlpA_like_DipZ_like Tl 22.1 1.9E+02 0.0041 17.3 3.8 25 84-108 98-122 (126)
289 PRK13190 putative peroxiredoxi 22.1 2.1E+02 0.0045 19.1 4.1 49 72-120 94-153 (202)
290 PF06018 CodY: CodY GAF-like d 21.4 2.6E+02 0.0057 18.7 4.5 39 77-115 20-58 (177)
291 PRK00270 rpsU 30S ribosomal pr 21.4 1.4E+02 0.0031 16.2 2.6 19 71-89 3-21 (64)
292 PF04013 Methyltrn_RNA_2: Puta 21.3 2.8E+02 0.0061 19.0 5.0 33 69-104 105-137 (199)
293 COG3277 GAR1 RNA-binding prote 21.3 1.1E+02 0.0024 18.4 2.3 16 94-109 28-43 (98)
294 cd03416 CbiX_SirB_N Sirohydroc 21.2 1.7E+02 0.0037 16.8 3.2 41 77-118 43-83 (101)
295 PF02971 FTCD: Formiminotransf 21.2 1.4E+02 0.003 19.3 2.8 45 74-120 60-105 (145)
296 COG1419 FlhF Flagellar GTP-bin 21.1 1.7E+02 0.0038 22.3 3.8 35 66-103 258-292 (407)
297 COG3798 Uncharacterized protei 21.0 81 0.0017 17.7 1.5 18 93-110 9-26 (75)
298 TIGR00385 dsbE periplasmic pro 20.9 1.7E+02 0.0038 18.8 3.5 34 88-121 134-171 (173)
299 COG1247 Sortase and related ac 20.8 98 0.0021 20.5 2.2 33 2-34 42-76 (169)
300 cd06906 M14_Nna1 Peptidase M14 20.8 1E+02 0.0023 22.1 2.5 27 81-107 84-110 (278)
301 PRK12686 carbamate kinase; Rev 20.7 1.8E+02 0.0039 21.3 3.7 43 81-123 173-225 (312)
302 TIGR03585 PseH pseudaminic aci 20.6 2.2E+02 0.0047 17.4 4.1 20 93-112 51-70 (156)
303 PF10260 SAYSvFN: Uncharacteri 20.6 19 0.00042 20.2 -0.9 26 6-31 41-66 (71)
304 PRK13191 putative peroxiredoxi 20.4 2.5E+02 0.0054 19.1 4.2 46 74-119 102-159 (215)
305 PF01980 UPF0066: Uncharacteri 20.2 51 0.0011 20.5 0.8 31 1-31 41-74 (120)
306 cd07238 Glo_EDI_BRP_like_5 Thi 20.1 1.9E+02 0.0041 16.5 4.6 32 79-110 67-111 (112)
307 COG5270 PUA domain (predicted 20.1 1.1E+02 0.0024 20.7 2.4 17 91-107 161-177 (202)
308 PF11112 PyocinActivator: Pyoc 20.1 1.8E+02 0.004 16.4 4.4 43 77-120 27-71 (76)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.70 E-value=3.1e-17 Score=111.49 Aligned_cols=96 Identities=15% Similarity=0.279 Sum_probs=81.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.++++.+.||+|++ +++|++|..|+.....+. -.+..++++| +++++++.+|+.+.|
T Consensus 197 ~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g---~~~~kV~~~M----------------~k~vitI~eDe~i~d 255 (294)
T COG2524 197 LFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG---NLDAKVSDYM----------------RKNVITINEDEDIYD 255 (294)
T ss_pred HHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC---CccccHHHHh----------------ccCCceEcCchhHHH
Confidence 5788999999999865 799999999995432111 1234667755 679999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
|+++|..+++.++.|+|.+|+++|+||++||++.++.
T Consensus 256 Air~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 256 AIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred HHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 9999999999999999999999999999999998764
No 2
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=1.2e-16 Score=98.73 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=75.9
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+++ +++|+++.+|+..............++.+++.. ...|..++.++.+++++.++
T Consensus 19 ~~~~~~~~~pVv~~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~l~~~ 87 (120)
T cd04641 19 LVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYNNLDLTVGEALER----------RSQDFEGVRTCSPDDCLRTI 87 (120)
T ss_pred HHHcCCCeeeEECCCC-eEEEEEeHHHHHHHHhcCccccccCCHHHHHhh----------cccCCCCCeEEcCCCcHHHH
Confidence 5678899999999877 999999999997542211100011123332211 01344577899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 88 ~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 88 FDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred HHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 3
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=2.6e-16 Score=94.53 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=68.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++++||+|+++++++|++|..|+..... +.++.+++++.+|
T Consensus 19 ~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------------~~~v~~~~~l~~a 64 (98)
T cd04618 19 LVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------------LVSIHPERSLFDA 64 (98)
T ss_pred HHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------------eEEeCCCCcHHHH
Confidence 567889999999986339999999999963210 4789999999999
Q ss_pred HHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~ 115 (126)
+++|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 65 ~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 65 ALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999999987 89999999999975
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-16 Score=110.09 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=85.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+.+|++.++||+|++. +++|+++.+|+.. .....+ ++++.... +....+|+.++.|+.++++..+
T Consensus 271 l~~H~ikaLPV~d~~~-rl~GiVt~~dl~~~a~~~p~------------qrlr~~~~-~~vk~imt~~v~tv~pdtpa~~ 336 (382)
T COG3448 271 LQEHRIKALPVLDEHR-RLVGIVTQRDLLKHARPSPF------------QRLRFLRP-PTVKGIMTTPVVTVRPDTPAVE 336 (382)
T ss_pred HHHcCccccccccccc-ceeeeeeHHHHhhccCcchH------------HHhhccCC-CcccccccCcceeecCCCcHHH
Confidence 5689999999999988 9999999999954 322111 11111111 1123488889999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhh
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~ 123 (126)
++-.+.+.+.|.+||+|++|+++||||.+|++.++++....
T Consensus 337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~ 377 (382)
T COG3448 337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ 377 (382)
T ss_pred HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877653
No 5
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=2.6e-16 Score=96.07 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=74.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+.+.+||+|+++ +++|+++..|+.....+. +.+.++.+ .|..++.++.+++++.+|
T Consensus 19 ~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~---~~~~~v~~----------------~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 19 INELGARAVVVVDEEN-KVLGQVTLSDLLEIGPND---YETLKVCE----------------VYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred HHHcCCCEEEEEcCCC-CEEEEEEHHHHHhhcccc---ccccChhh----------------eeecCCcEECCCCcHHHH
Confidence 4567788999999877 999999999996542211 11223444 345577899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+.+|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999986
No 6
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=2.7e-16 Score=96.39 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=76.4
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+...+||+|+++ +++|+++.+|+..............++.+++ ..++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~Vvd~~g-~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~~ 80 (114)
T cd04619 18 ILGEPGIDLVVVCDPHG-KLAGVLTKTDVVRQMGRCGGPGCTAPVENVM----------------TRAVVSCRPGDLLHD 80 (114)
T ss_pred HHHhcCCCEEEEECCCC-CEEEEEehHHHHHHHhhcCCCcccCCHHHHh----------------cCCCeeECCCCCHHH
Confidence 46778899999999888 9999999999964321100011223455544 457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999998899999999999875
No 7
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=3.9e-15 Score=92.73 Aligned_cols=108 Identities=36% Similarity=0.616 Sum_probs=76.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+++ +++|+++.+|++........ ....+...++ .+.. ........|..++.++.+++++.+|
T Consensus 19 ~~~~~~~~i~V~d~~~-~~~Giv~~~dl~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~v~~~~~l~~a 93 (126)
T cd04642 19 MRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDD-LLLYRTITFK-ELSE--KFTDSDGVKSRPLITCTPSSTLKEV 93 (126)
T ss_pred HHHhCCCcccEECCCC-cEEEEEEHHHhhhhhcCcch-hhcccchhhh-hhhh--hcccccccccCCCeEECCCCcHHHH
Confidence 4567899999999887 99999999999654221111 0011111111 0000 0001112455688999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
+++|.+++.+.+||+|++++++|+||..|++++
T Consensus 94 ~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~~ 126 (126)
T cd04642 94 ITKLVANKVHRVWVVDEEGKPIGVITLTDIISI 126 (126)
T ss_pred HHHHHHhCCcEEEEECCCCCEEEEEEHHHHhcC
Confidence 999999999999999988999999999999863
No 8
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=1e-14 Score=90.41 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=73.5
Q ss_pred cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
.|.++++..+||+|++ + +++|+++..|+.......... .+..+...... .. ....|..++.++.+++++.
T Consensus 18 ~~~~~~~~~~~V~d~~~~-~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~----~~-~~~~~~~~~~~v~~~~~l~ 88 (123)
T cd04627 18 ILGSGGIHRVAVTEEESG-EVIGILSQRRLVEFLWENARS---FPGLDPLYPIP----LR-DLTIGTSDVISINGDQPLI 88 (123)
T ss_pred HHhhCCcceEEEEeCCCC-cEEEEEEHHHHHHHHHHhHHh---ccchhhhhhhh----hh-hcccCcCCceEeCCCCCHH
Confidence 4566788999999987 6 999999999996532221100 01111100000 00 0014556889999999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI 114 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil 114 (126)
+|++.|.+++.+.+||+|++|+++|+||++|+-
T Consensus 89 ~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 89 DALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred HHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 999999999999999999889999999999873
No 9
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=5.5e-15 Score=90.41 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=73.8
Q ss_pred cccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 3 WYKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
.|.+.+.+.+||+|++ + +++|+++.+|+..............++.+++ ..++.++.+++++.
T Consensus 18 ~~~~~~~~~~~V~~~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~ 80 (114)
T cd04630 18 LMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGRDPDRVNVYEIM----------------TKPLISVSPDMDIK 80 (114)
T ss_pred HHHHcCCCEEEEEECCCC-cEEEEEehHHHHHHHHhCCCCCCccCHHHHh----------------cCCCeeECCCCCHH
Confidence 3566788899999987 6 9999999999964211110011122455544 45788999999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++++.|.+.+.+.+||+|+ |+++|+|++.|+++
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 9999999999999999996 99999999999975
No 10
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=7.3e-15 Score=87.75 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=69.3
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+++.+||+|+++ +++|+++..|+.... .+.++.+++++.+
T Consensus 18 ~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~----------------------------------~~~~v~~~~~l~~ 62 (96)
T cd04614 18 IMELANVKALPVLDDDG-KLSGIITERDLIAKS----------------------------------EVVTATKRTTVSE 62 (96)
T ss_pred HHHHcCCCeEEEECCCC-CEEEEEEHHHHhcCC----------------------------------CcEEecCCCCHHH
Confidence 46778899999999887 999999999996431 1378999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.+|.+++.+.+||++++|+++|+||++|+++
T Consensus 63 a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 63 CAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999985
No 11
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=1.4e-14 Score=87.81 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=74.0
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+++.+.+||+|+++ +++|+++..|+..... ..++.+++ ..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~-------~~~v~~~~----------------~~~~~~v~~~~~l~~ 74 (108)
T cd04596 19 LNKETGHSRFPVVDEKN-KVVGIVTSKDVAGKDP-------DTTIEKVM----------------TKNPITVNPKTSVAS 74 (108)
T ss_pred HHHHcCCCceeEECCCC-eEEEEecHHHHhcccc-------cccHHHHh----------------cCCCeEECCCCCHHH
Confidence 35667788999999877 9999999999964321 12455544 447789999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||++++|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 12
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=7.5e-15 Score=90.45 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=73.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.++++..+||+|+++ +++|+++..|+....... ..+...++.++|.. ..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~V~d~~~-~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~v~~~~~l~~~ 82 (118)
T cd04617 19 LFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTR--------------MPNITTTTPEESVLEA 82 (118)
T ss_pred HHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCC--------------CCCcEEECCCCcHHHH
Confidence 4567889999999887 999999999986432111 01112344554410 1267899999999999
Q ss_pred HHHHHhcCCCEEEEEcCC---CceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil~ 115 (126)
+++|.+++.+.+||+|++ |+++|+||++|+++
T Consensus 83 ~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 83 AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999976 69999999999875
No 13
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=8.2e-15 Score=89.57 Aligned_cols=94 Identities=23% Similarity=0.397 Sum_probs=72.6
Q ss_pred ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
|.+++ .+.+||+|+++ +++|+++.+|+....... ....++.+++.. ..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~---~~~~~v~~~~~~--------------~~~~~~v~~~~~l~~ 80 (114)
T cd04801 19 YVLGSNQRRFVVVDNEG-RYVGIISLADLRAIPTSQ---WAQTTVIQVMTP--------------AAKLVTVLSEESLAE 80 (114)
T ss_pred HhccCCceeEEEEcCCC-cEEEEEEHHHHHHHHHhh---ccccchhhhhcc--------------cccceEECCCCcHHH
Confidence 44454 88999999877 999999999996543221 112345555421 123568999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
|++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 81 VLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999998899999999999875
No 14
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.56 E-value=1.3e-14 Score=88.78 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=74.8
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+++.+||+|+++ +++|+++.+|+.....+.. .....++.++ |..++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~----------------~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 18 QLIESKHGSALVVDRDG-GVVGIITLPDLLRALEADE-AGEPSAVDEV----------------ATPPLLTVHPDEPLAH 79 (115)
T ss_pred HHHhCCCcEEEEEcCCC-CEEEEEEHHHHHHHHhccc-ccccccHHHh----------------ccCCceEECCCCCHHH
Confidence 45677889999999887 9999999999965322210 0011123443 3457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCC--CceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQ--RLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~--~~lvGivs~~dil~ 115 (126)
++++|.+++...+||+|++ |+++|+||.+|+++
T Consensus 80 ~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 80 ALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 9999999999999999977 79999999999986
No 15
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=1.2e-14 Score=89.97 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=74.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+++.+||+|+++ +++|+++..|+.......... ....+.+. ...... ...+|..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~----~~~~~~~~--~~~~~~-i~~~~~~~~~~~~~~~~l~~ 90 (124)
T cd04600 19 LLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRR----PLRGRLRG--RDKPET-VGDIMSPPVVTVRPDTPIAE 90 (124)
T ss_pred HHHHcCCceeeEECCCC-CEEEEEEHHHHHhhhcccccc----hhhhhhhc--cccccc-HHHhccCCCeeeCCCCcHHH
Confidence 35667888999999877 999999999995432111000 00000000 000000 01245668899999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 91 ~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 91 LVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred HHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 999999999999999998899999999999975
No 16
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=1.5e-14 Score=87.88 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=73.9
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+++++.+||+|+++ +++|+++.+|+..............++.++ |..++.++.++.++.+
T Consensus 18 ~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~~~~ 80 (113)
T cd04623 18 LMAEKNIGAVVVVDDGG-RLVGIFSERDIVRKVALRGASALDTPVSEI----------------MTRNVITVTPDDTVDE 80 (113)
T ss_pred HHHHcCCCeEEEECCCC-CEEEEEehHHHHHHHhhcCCCccccCHHHh----------------cCCCcEEECCCCcHHH
Confidence 35667889999999877 999999999996432211101112234443 3457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999999996 99999999999975
No 17
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=2.2e-14 Score=87.51 Aligned_cols=94 Identities=23% Similarity=0.337 Sum_probs=74.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+...+||+|+++ +++|+++.+|+........ ....++.+++ ..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~----------------~~~~~~v~~~~~l~~ 79 (113)
T cd04607 19 KIDKNALRIVLVVDENG-RLLGTVTDGDIRRALLKGL--SLDDPVSEVM----------------NRNPITAKVGSSREE 79 (113)
T ss_pred HHHhcCcCEEEEECCCC-CEEEEEEcHHHHHHHhcCC--CcCCCHHHhh----------------cCCCEEEcCCCCHHH
Confidence 35567888999999877 9999999999853211110 0122455544 446788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 80 ILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 999999999999999998899999999999874
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.54 E-value=4.3e-15 Score=92.65 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=74.4
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+++ +++|+++..|+.....+... ....++.++| .+++.++.+++++.++
T Consensus 20 m~~~~~~~~~Vvd~~~-~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im----------------~~~~~~v~~~~~~~~v 81 (124)
T cd04608 20 LKEKGFDQLPVVDESG-KILGMVTLGNLLSSLSSGKV-QPSDPVSKAL----------------YKQFKRVNKNDTLGKL 81 (124)
T ss_pred HHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHHhcc-CCCCcHHHHh----------------hccceecCCCCCHHHH
Confidence 5667889999999887 99999999999643222110 1234666755 4588999999999999
Q ss_pred HHHHH---------hcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 84 IGKAL---------TKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 84 ~~~m~---------~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
.+++. +.+.+.+||++++|+++|+||..|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 99653 34678889999889999999999999763
No 19
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=5.2e-14 Score=85.72 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=74.4
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++.+.+||+|+++ +++|+++..|+.....+. ..+...++.+++ ..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~vvd~~~-~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~----------------~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 19 MYTSGSRALPVVDDKK-RLVGIITRYDVLSYALES-EELKDAKVREVM----------------NSPVITIDANDSIAKA 80 (113)
T ss_pred HHHcCCceEeEEcCCC-CEEEEEEHHHHHHhhhhh-hhhcCCcHHHhc----------------cCCceEECCCCcHHHH
Confidence 4567788999999877 999999999996432111 111223455543 4578899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 20
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=5e-14 Score=84.86 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=72.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
.|.+.+...+||+|+++ +++|+++..|+..... .++.++ |.+.+.++.+++++.+
T Consensus 18 ~~~~~~~~~~~v~d~~g-~~~Giv~~~dl~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~ 72 (106)
T cd04582 18 LMDDSDLRALTVVDADG-QPLGFVTRREAARASG--------GCCGDH----------------AEPFKVTVSVDDDLRI 72 (106)
T ss_pred HHHhcCCCEEEEECCCC-CEEEEEeHHHHHHhcc--------cchhhh----------------cccCCEEECCCCCHHH
Confidence 35667788999999877 9999999999964311 123333 3446678999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++...+||+|++|+++|+||+++++.
T Consensus 73 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 73 VLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 21
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=6.6e-14 Score=84.95 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=69.7
Q ss_pred CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHH
Q 039385 9 VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKAL 88 (126)
Q Consensus 9 ~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~ 88 (126)
+..+||+|+++ +++|+++.+|+.... ...++.+++ ..++.++.+++++.++++.|.
T Consensus 25 ~~~~~vvd~~~-~~~G~v~~~~l~~~~-------~~~~v~~~~----------------~~~~~~i~~~~~~~~~~~~~~ 80 (109)
T cd04606 25 IYYIYVVDEEG-RLLGVVSLRDLLLAD-------PDTPVSDIM----------------DTDVISVSADDDQEEVARLFE 80 (109)
T ss_pred eeEEEEECCCC-CEEEEEEHHHHhcCC-------CcchHHHHh----------------CCCCeEEcCCCCHHHHHHHHH
Confidence 47899999877 999999999986431 112444443 446789999999999999999
Q ss_pred hcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 89 TKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 89 ~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
+++.+.+||+|++++++|+||..|+++.
T Consensus 81 ~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 81 KYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999988999999999999875
No 22
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=2.3e-14 Score=87.63 Aligned_cols=94 Identities=14% Similarity=0.243 Sum_probs=71.4
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhh---hhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCC
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTW---LPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDS 78 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~ 78 (126)
+|.+.+++.+||+|+++ +++|+++.+|+....... ..++ ...++.+ .|..++.++.+++
T Consensus 18 ~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~~~~ 80 (116)
T cd04643 18 VLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENLDLERLVDLKVID----------------VMNTDVPVIIDDA 80 (116)
T ss_pred HHHHCCCceeeeECCCC-cEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH----------------HhcCCCceecCCC
Confidence 45678899999999877 999999999995432111 0000 0123333 3455788999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.+++..|.+.+ .+||+|++|+++|++|..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998764 5999998899999999999975
No 23
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=3.2e-14 Score=87.75 Aligned_cols=95 Identities=21% Similarity=0.376 Sum_probs=73.9
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHh--------hhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQT--------WLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ 75 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~ 75 (126)
|.+.+++.+||+|+++ +++|+++..|+.......... ....++.+ +|..++.++.
T Consensus 19 ~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~ 81 (122)
T cd04803 19 MREHRIRHLPVVNEDG-KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------------VMKTDVLTVT 81 (122)
T ss_pred HHHcCcccccEECCCC-CEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------------hhCCCCeEeC
Confidence 4567889999999877 999999999996432111100 01123333 3455788999
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999998799999999999975
No 24
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2.3e-14 Score=87.32 Aligned_cols=95 Identities=23% Similarity=0.238 Sum_probs=73.6
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccC-cHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
+|.+.+.+.+||+|+++ +++|+++..|+... ...........++.+++ ..++.++.+++++.
T Consensus 18 ~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~ 80 (114)
T cd04629 18 KLLKSKISGGPVVDDNG-NLVGFLSEQDCLKQLLESSYHCDGVATVRDIM----------------TTEVLTVSPDDSIV 80 (114)
T ss_pred HHHhcCCCCccEECCCC-eEEEEeehHHHHHHhhhhhhccCCCccHHHHh----------------ccCceEECCCCcHH
Confidence 34567788999999887 99999999999543 21111111122444543 44778899999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 9999999999999999996 99999999999975
No 25
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.53 E-value=4.1e-14 Score=85.93 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=72.2
Q ss_pred ccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
|.+.+.+.+||++++ + +++|+++..|+........ ...++..+ + .++.++.+++++.+
T Consensus 19 ~~~~~~~~~~v~~~~~~-~~~G~v~~~~l~~~~~~~~---~~~~~~~~----------------~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 19 IAESGHSRFPVYDGDLD-NIIGVVHVKDLLRALAEGE---EDLDLRDL----------------L-RPPLFVPESTPLDD 77 (111)
T ss_pred HhhCCCceEEEECCCCc-eEEEEEEHHHHHHHHHcCC---CcCCHHHH----------------h-cCCeecCCCCcHHH
Confidence 566788999999987 6 9999999999965422111 01123332 2 35688999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999998899999999999875
No 26
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.53 E-value=5.6e-14 Score=104.99 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=78.8
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+++ +++|+++.+|+..... ..++.++ |+.++.++++++++.+|
T Consensus 115 m~~~~~s~l~VVD~~g-klvGIVT~rDL~~~~~-------~~~V~di----------------Mt~~~itV~~d~sL~eA 170 (479)
T PRK07807 115 LPKRAHGAVVVVDEEG-RPVGVVTEADCAGVDR-------FTQVRDV----------------MSTDLVTLPAGTDPREA 170 (479)
T ss_pred HHhcCCceEEEECCCC-eEEEEEeHHHHhcCcc-------CCCHHHh----------------ccCCceEECCCCcHHHH
Confidence 5678899999999877 9999999999965421 1245554 45688999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
+..|.+++++.+||+|++++++|+||++||++.....
T Consensus 171 l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 171 FDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999889999999999999976543
No 27
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=6.1e-14 Score=85.02 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=73.7
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+++++.+||+|+++ +++|+++..|+........ .++.+ .|..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~-----~~~~~----------------~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 19 LMIEENINHLPVVDEDG-RLVGIVTSWDISKAVARDK-----KSVED----------------IMTRNVITATPDEPIDV 76 (110)
T ss_pred HHHhCCCceEEEECCCC-cEEEEEeHHHHHHHHhhCc-----cCHHH----------------hcCCCCeEECCCCcHHH
Confidence 45677889999999887 9999999999954321111 12333 33457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999998899999999999864
No 28
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=6.3e-14 Score=86.76 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=73.3
Q ss_pred ccCCCCceeeEeeCC-CceeEEEeeccccccCcHHHHH-h---------hhhhcHHHHHHHHhcCCCCCCCccccccceE
Q 039385 4 YKKPNVERNSISLGN-GWRLIGTFSASDLRGCHYAVLQ-T---------WLPLTALEFTQQVLTSPLFSESNTTQQRELL 72 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 72 (126)
|.+++.+.+||+|++ + +++|+++..|+.....+... . ....++.+ .|..++.
T Consensus 19 ~~~~~~~~i~V~d~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 81 (125)
T cd04631 19 MVRNGFRRLPVVDEGTG-KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----------------IMTRNVI 81 (125)
T ss_pred HHHcCcccceeEeCCCC-EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----------------HhcCCce
Confidence 556788899999987 6 99999999999643211100 0 00112233 3455789
Q ss_pred EEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 73 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999999999997799999999999986
No 29
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=8e-14 Score=86.84 Aligned_cols=96 Identities=17% Similarity=0.304 Sum_probs=73.3
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HH-----------hhhhhcHHHHHHHHhcCCCCCCCccccccc
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQ-----------TWLPLTALEFTQQVLTSPLFSESNTTQQRE 70 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 70 (126)
+|.+.+++.+||+|+++ +++|++|.+|+....... .. .....++.+ .|..+
T Consensus 18 ~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 80 (128)
T cd04632 18 VLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----------------AMSSP 80 (128)
T ss_pred HHHHcCCCEEEEECCCC-cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----------------HhcCC
Confidence 46678899999999887 999999999996431111 00 001112222 45568
Q ss_pred eEEEeCCCCHHHHHHHHHhcCCCEEEEEc--CCCceEEEEeHHHHHH
Q 039385 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVD--QQRLLLGLVSLTDMIR 115 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~~~~lvGivs~~dil~ 115 (126)
++++.++.++.+++..|.+++.+.+||++ ++|+++|+||++|+++
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 89999999999999999999999999994 4689999999999875
No 30
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=5.4e-14 Score=88.90 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=74.0
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhhhhhcHHHHHHH-------HhcCCCCCCCccccccceEEE
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTWLPLTALEFTQQ-------VLTSPLFSESNTTQQRELLTC 74 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~m~~~~~~v 74 (126)
+|.+.+.+.+||+|+++ +++|+++..|+....... ...+.. ....+.+. .......+ ..+.|..++.++
T Consensus 18 ~~~~~~~~~l~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v 94 (135)
T cd04621 18 EMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNERGLPK-KSIKMKRKAGQKRYRYVKEVPLV-AEDIMTEEIITV 94 (135)
T ss_pred HHHHcCCCcceEECCCC-CEEEEEeHHHHHHHhhcccccccch-hhhhhhhhccccccccccccccc-HHHhcCCCCeEE
Confidence 46677889999999877 999999999995432111 000000 00000000 00000000 112556688899
Q ss_pred eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.+++++.+++..|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 95 SPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 99999999999999999999999996 99999999999986
No 31
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=5.5e-14 Score=100.79 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=74.4
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++.+.+||+|+++ +++|++|.+|++...... ..+...++.+ +|++++.++.+++++.+|
T Consensus 230 ~~~~~~~~~vVvd~~g-~lvGivt~~Dl~~~~~~~-~~~~~~~v~~----------------im~~~~~~v~~~~~l~~a 291 (326)
T PRK10892 230 ITRKNLGMTVICDDNM-KIEGIFTDGDLRRVFDMG-IDLRQASIAD----------------VMTPGGIRVRPGILAVDA 291 (326)
T ss_pred HHhcCCCeEEEEcCCC-cEEEEEecHHHHHHHhcC-CCcccCCHHH----------------hcCCCCEEECCCCCHHHH
Confidence 4566778888888887 999999999996432111 0112234555 456688999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
+++|.+++++.+||++ +++++|+||++|++++
T Consensus 292 ~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 292 LNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9999999999999998 6899999999999874
No 32
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.52 E-value=7.5e-14 Score=98.94 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=78.4
Q ss_pred cCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHH
Q 039385 5 KKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVI 84 (126)
Q Consensus 5 ~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~ 84 (126)
.+.+.+.+||+|+.. +++|++|.+|+....+.. ++.. +|+++++++.+.+++..+.
T Consensus 217 ~kt~~sRfPVvn~~~-kvvGvVt~rDv~~~~~~t-------~ieK----------------VMtknp~tv~~~tsVAsva 272 (432)
T COG4109 217 EKTGHSRFPVVNRSM-KVVGVVTMRDVLDKKPST-------TIEK----------------VMTKNPITVRAKTSVASVA 272 (432)
T ss_pred HHcCCCccceecccc-eEEEEEEehhhhcCCCCc-------cHHH----------------HhccCCeeecccchHHHHH
Confidence 457899999999988 999999999996553222 3333 5677999999999999999
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+|.-.++..+||+|++++++|+||++|+++.+-
T Consensus 273 q~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 273 QMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred HHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999999999874
No 33
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.51 E-value=1.2e-13 Score=83.61 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=71.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC-CCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV-DSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~-~~~l~~ 82 (126)
|.+++.+.+||+|+++ +++|+++.+++..... .+.++.+++ ..++..+.+ ++++.+
T Consensus 20 ~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~------~~~~v~~~~----------------~~~~~~~~~~~~~l~~ 76 (110)
T cd04601 20 MAEYGISGLPVVDDDG-KLVGIVTNRDLRFETD------LDKPVSEVM----------------TPENLLTTVEGTSLEE 76 (110)
T ss_pred HHHcCCceEEEEcCCC-EEEEEEEhhHeeeccc------CCCCHHHhc----------------ccCceEEecCCCCHHH
Confidence 4567889999999887 9999999999854321 122455544 334455666 999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999998899999999999875
No 34
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=7.3e-14 Score=84.87 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=73.2
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+++.+||+|+++ +++|+++.+|+........ +...++.+++ ..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~----------------~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 19 MLKYNTNEIIVKDNEE-KLKGVVTFTDILDLDLFES--FLEKKVFNIV----------------SQDVFYVNEEDTIDEA 79 (111)
T ss_pred HHHhCCCeEEEEcCCC-CEEEEEehHHhHHHHhhcc--cccCcHHHHh----------------cCCcEEEcCCCcHHHH
Confidence 4567789999999877 9999999999965422210 1122444443 4578899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+..|.+++...+||+++ |+++|+||+.|++.
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999996 99999999999874
No 35
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=1.3e-13 Score=85.06 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=73.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcH-----HHHH---hhhhhcHHHHHHHHhcCCCCCCCccccccceEEEe
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHY-----AVLQ---TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQ 75 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~ 75 (126)
|.+++++.+||+|+++ +++|+++..|+..... +... .....++.+ +|..++.++.
T Consensus 19 ~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~ 81 (122)
T cd04635 19 MLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------------IMSTPVYSVT 81 (122)
T ss_pred HHHcCCCcccEECCCC-cEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------------HhcCCCeeEC
Confidence 4567889999999877 9999999999964310 0000 001112333 3455789999
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++++.+++..|.+.+.+.+||+|++|+++|++|+.|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999998899999999999985
No 36
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.51 E-value=6.7e-14 Score=84.55 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=73.3
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
.|.++++..+||+|+++ +++|+++..|+...... ..++.+++ ...+.++.+++++.+
T Consensus 19 ~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~------~~~v~~~~----------------~~~~~~v~~~~~~~~ 75 (109)
T cd04583 19 LMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYKE------AKSLEDIM----------------LEDVFTVQPDASLRD 75 (109)
T ss_pred HHHHCCCceEEEEcCCC-cEEEEEEHHHHHHHhhc------CCcHhHhh----------------cCCceEECCCCcHHH
Confidence 35667889999999877 99999999999643211 11344433 457788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++..|.+.+...+||++++|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999998899999999999875
No 37
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.51 E-value=1.4e-13 Score=103.32 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=77.2
Q ss_pred ccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385 4 YKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80 (126)
Q Consensus 4 ~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l 80 (126)
|.+++++.+||+|+ ++ +++|+||.+|++... .....++.++|.. .++++++.+++++
T Consensus 123 m~~~~~~~vpVVD~~~~~g-kLvGIVT~~DLr~~~-----~~~~~~V~dIMt~--------------~~~~itv~~d~~l 182 (502)
T PRK07107 123 KEKTGHSTVAVTEDGTAHG-KLLGIVTSRDYRISR-----MSLDTKVKDFMTP--------------FEKLVTANEGTTL 182 (502)
T ss_pred HHhcCCCeEEEEeCCCcCC-EEEEEEEcHHhhccc-----cCCCCCHHHHhCC--------------CCCeEEECCCCcH
Confidence 46778899999997 45 999999999996321 1133467776521 1378899999999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
.+|+++|.++++..+||+|++++++|+||+.|+++..
T Consensus 183 ~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 183 KEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 9999999999999999999889999999999999864
No 38
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=5.2e-14 Score=87.65 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=70.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHH-HH----HhhhhhcHHHHHHHHhcCCCCCCCccccccceE--EE--
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYA-VL----QTWLPLTALEFTQQVLTSPLFSESNTTQQRELL--TC-- 74 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~--~v-- 74 (126)
|.+++...+||+|+++ +++|+++..|+...... .. ..+...++.++| .+++. .+
T Consensus 19 ~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im----------------~~~~~~~~~~~ 81 (126)
T cd04640 19 MIKHGVRLLLVVDSDD-NFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM----------------TPKEDLKALDL 81 (126)
T ss_pred HHHcCCcEEEEEcCCC-cEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc----------------CchhhhccccH
Confidence 4567888999999887 99999999999742110 00 011233455554 33332 33
Q ss_pred --eCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHH
Q 039385 75 --QVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIR 115 (126)
Q Consensus 75 --~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~ 115 (126)
.+++++.+++++|.+++.+.+||+|++ |+++|+||++|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 79999999999975
No 39
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=4e-14 Score=89.12 Aligned_cols=110 Identities=27% Similarity=0.328 Sum_probs=73.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH----Hhhhhhc--HHHHHHHHhcCCCCCCCccccccceEEEeC
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL----QTWLPLT--ALEFTQQVLTSPLFSESNTTQQRELLTCQV 76 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~ 76 (126)
.|.++++..+||+|+++ +++|+++..|+........ ..+.... ...+........... ...+|..++.++.+
T Consensus 19 ~~~~~~~~~~~Vvd~~~-~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~ 96 (135)
T cd04586 19 LMLDNHISGLPVVDDDG-RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK-VADVMTRPVVTVGE 96 (135)
T ss_pred HHHHcCCCCceEECCCC-CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC-HHHHhCCCceEeCC
Confidence 35677888999999877 9999999999954311000 0000000 000000000000001 11245567899999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++++.+++..|.+.+.+.+||+| +|+++|+||+.|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 97 DTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 99999999999999999999999 899999999999875
No 40
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.50 E-value=9.9e-14 Score=84.44 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=74.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+.+.+||+|+++ +++|+++..++..+..... .....++.+++ ..++.++.+++++.++
T Consensus 20 ~~~~~~~~~~v~d~~~-~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~~----------------~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 20 MSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGL-DILTLPVADVM----------------TRNPKTIDPDALAAEA 81 (114)
T ss_pred HHhcCccEEEEEcCCC-CEEEEechHHHHHHHhccC-ccccCCHHHhh----------------ccCCeEECCCCcHHHH
Confidence 3456788999999887 9999999999865422211 01112455544 4467889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++|.+++.+.+||++++++++|+|+..||++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 41
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=1.1e-13 Score=84.05 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=73.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+...+||+|+++ +++|+++..|+....... ....++.++ |..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~---~~~~~v~~~----------------~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 19 LLATTQHEFPVVDGDG-HLVGLLTRDDLIRALAEG---GPDAPVRGV----------------MRRDFPTVSPSATLDAV 78 (111)
T ss_pred HHHcCCCcceEECCCC-cEEEEeeHHHHHHHHHhc---CCCCcHHHH----------------hcCCCcEECCCCcHHHH
Confidence 4567789999999877 999999999996432111 011234443 34577899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+++...+||++++|+++|++|.+|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998799999999999874
No 42
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.50 E-value=1.2e-13 Score=100.70 Aligned_cols=109 Identities=28% Similarity=0.430 Sum_probs=83.9
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhc-HHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLT-ALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
-|...+++++||+|..+ +.+|+++..|++.+..+......... +...... .. .-..++++|.++.++.
T Consensus 254 ~m~~~~is~lpvV~~~g-~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~---~~-------~~~~~vvtc~~~ssL~ 322 (381)
T KOG1764|consen 254 IMSERRISALPVVDENG-KKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSH---RP-------IRFEGVVTCRPTSTLA 322 (381)
T ss_pred HHHhcCcCcceEEcCCC-ceecceehhhhhhhhhcCccCccchhHHHHHhhh---cc-------cccCccEEEeecchHH
Confidence 36789999999999999 77999999999877433221112222 2232221 11 1123579999999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
+++.+|..+++|+++|+|++|.++|+||.+|++..+.....
T Consensus 323 ~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 323 EVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred HHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999877654
No 43
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=8.5e-14 Score=99.56 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=75.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++...+||+|+++ +++|+++.+|+........ ....++.+ +|++++.++.+++++.+|
T Consensus 225 ~~~~~~~~~~Vvd~~g-~~iG~vt~~dl~~~~~~~~--~~~~~v~~----------------im~~~~~~v~~~~~l~~a 285 (321)
T PRK11543 225 LSRTGLGLVAVCDAQQ-QVQGVFTDGDLRRWLVGGG--ALTTPVNE----------------AMTRGGTTLQAQSRAIDA 285 (321)
T ss_pred HHHcCCCEEEEEcCCC-cEEEEecHHHHHHHHhCCC--CcCCcHHH----------------hcCCCCEEECCCCCHHHH
Confidence 4567788999999888 9999999999864211110 01223444 456688999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.|.+++...+||+|++|+++|+||+.|++++
T Consensus 286 ~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 286 KEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999988999999999999864
No 44
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.49 E-value=2.1e-13 Score=73.82 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=50.6
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 67789999999999999999999999999999999999999999999999875
No 45
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.49 E-value=1.4e-13 Score=83.45 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=72.8
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++...+||+|+ + +++|+++.+|+......... ...++.++ |..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~V~~~-~-~~~G~v~~~~l~~~~~~~~~--~~~~v~~~----------------~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 19 MRERRISSIVVVDD-G-RPLGIVTERDILRLLASGPD--LQTPVGEV----------------MSSPLLTVPADTSLYDA 78 (111)
T ss_pred HHHcCCCEEEEeeC-C-EEEEEEeHHHHHHHHhcCCC--CCcCHHHh----------------cCCCceEECCCCCHHHH
Confidence 55667889999987 6 99999999999644221110 12244443 34578889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+.+...+||+|++|+++|+|+++|+++
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999998899999999999975
No 46
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.49 E-value=1.6e-13 Score=83.89 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred cccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeC--C
Q 039385 3 WYKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQV--D 77 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~--~ 77 (126)
+|.+.+++.+||+|+ ++ +++|+++..|+..... ...++.+++ ..++.++.. +
T Consensus 19 ~~~~~~~~~~~V~d~~~~~~-~~~G~v~~~dl~~~~~------~~~~v~~~~----------------~~~~~~~~~~~~ 75 (114)
T cd04602 19 IKEKKGFSGIPVTEDGKSGG-KLLGIVTSRDIDFLTD------SETPLSEVM----------------TPREVLVVAPTG 75 (114)
T ss_pred HHHHcCCCceEEeeCCCcCC-EEEEEEEhHHhhhhhc------cCCCHHHhc----------------CCCceEEECCCC
Confidence 355678889999997 56 9999999999853211 012344443 445566655 9
Q ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.++++.|.+++...+||++++|+++|+||++|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999875
No 47
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=1.6e-13 Score=83.18 Aligned_cols=91 Identities=25% Similarity=0.357 Sum_probs=73.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+.+.+||+|+ + +++|+++..|+....... +...++.+++ ..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~V~d~-~-~~~G~v~~~dl~~~~~~~---~~~~~~~~~~----------------~~~~~~v~~~~~l~~ 77 (110)
T cd04595 19 LLLRYGHTALPVVEG-G-RVVGIISRRDVEKALRHG---LGHAPVKDYM----------------STDVVTVPPDTPLSE 77 (110)
T ss_pred HHHHcCCCeeeEeeC-C-EEEEEEEHHHHHHHHhcc---cccCcHHHHh----------------cCCCEEECCCCcHHH
Confidence 355677889999998 6 999999999986432111 1233555544 457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++..|.+++.+.+||++ +|+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 78 VQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 99999999999999999 899999999999874
No 48
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=1.4e-13 Score=83.60 Aligned_cols=93 Identities=25% Similarity=0.327 Sum_probs=73.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+++.+||+|+++ +++|+++..|+........ ....++.+ +|..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~v~d~~~-~~~G~v~~~~l~~~~~~~~--~~~~~v~~----------------~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 19 MAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGI--DLDTPVSE----------------IMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred HHHcCCCEEEEECCCC-CEEEEeeHHHHHHHHhccC--CCccCHHH----------------hccCCCEEECCCCcHHHH
Confidence 4567788999999887 9999999999853321110 11223444 334578899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+.+|.+++...+||++++|+++|++|++|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999875
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.49 E-value=1.5e-13 Score=83.26 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=73.6
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+++.+||+++ + +++|+++..|+....... ....++.+++ ..++.++.++.++.+
T Consensus 18 ~~~~~~~~~~~v~~~-~-~~~G~v~~~~l~~~~~~~---~~~~~v~~~~----------------~~~~~~v~~~~~~~~ 76 (110)
T cd04588 18 LFNTHHIHGAPVVDD-G-KLVGIVTLSDIAHAIARG---LELAKVKDVM----------------TKDVITIDEDEQLYD 76 (110)
T ss_pred HHHHcCCCEEEEeeC-C-EEEEEEEHHHHHHHHhcc---ccccCHHHHh----------------cCCceEECCCCCHHH
Confidence 356678899999998 7 999999999996432211 1112445543 457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+.+.+.+||++++|+++|+|+..|+++
T Consensus 77 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 77 AIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 999999999999999998899999999999875
No 50
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.49 E-value=2e-13 Score=83.87 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=72.6
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.++..+||+|+ + +++|+++..|+......... .....+...... . ......|.+++.++.+++++.++
T Consensus 19 ~~~~~~~~~~V~d~-~-~~~G~i~~~~l~~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~v~~~~~l~~~ 89 (122)
T cd04585 19 MKENSIRRLPVVDR-G-KLVGIVTDRDLKLASPSKAT---TLDIWELYYLLS---K-IKVSDIMTRDPITVSPDASVEEA 89 (122)
T ss_pred HHhCCcceeeEecC-C-eEEEEEeHHHHHHhhhcccc---cccchhhhhhhc---c-cCHHHhccCCCeEeCCCCcHHHH
Confidence 45667889999997 6 99999999999654221110 000000000000 0 00011455678999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+..|.+.+.+.+||++++|+++|+||..|+++
T Consensus 90 ~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 90 AELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred HHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999998899999999999986
No 51
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.48 E-value=1.4e-13 Score=97.43 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++++.+||++++.++++|+++.+|+....... ....++.++ |+ ++.++++++++.++
T Consensus 95 i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~---~~~~~l~~l----------------~r-~~~~V~e~~~l~~~ 154 (292)
T PRK15094 95 IIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD---AEAFSMDKV----------------LR-QAVVVPESKRVDRM 154 (292)
T ss_pred HHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc---CCcCCHHHH----------------cC-CCcCcCCCCcHHHH
Confidence 46788999999987634899999999996432111 011123443 33 45689999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
++.|.+++.+.+||+|+.|.++|+||+.|+++.+...+.
T Consensus 155 L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 155 LKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999877654
No 52
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.9e-13 Score=83.03 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=69.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++...++|.+ ++ +++|+++.+|+.........++...++.+++ ..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~v~~-~~-~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~----------------~~~~~~v~~~~~l~~a 80 (112)
T cd04625 19 MAEQDLGSLVVME-RG-ELVGLLTFREVLQAMAQHGAGVLDTTVRAIM----------------NPEPIVASPDDSIDEV 80 (112)
T ss_pred HHHcCCCeEEEee-CC-EEEEEEEHHHHHHHHHhcCCchhcCCHHHHh----------------CCCCeEECCCCCHHHH
Confidence 4455666677665 46 9999999999964322110111223455544 4467889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++|.+++...+||++ +|+++|+||.+|+++
T Consensus 81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999 599999999999975
No 53
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=3.2e-13 Score=81.34 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=71.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+.+.+||+|+ + +++|+++..|+..... ..++.++ |..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~~v~d~-~-~~~g~v~~~~l~~~~~-------~~~~~~~----------------~~~~~~~v~~~~~l~~ 73 (107)
T cd04610 19 LIKETGHDGFPVVDN-G-KVVGIVSARDLLGKDP-------DETVEEI----------------MSKDLVVAVPEMDIMD 73 (107)
T ss_pred HHHHcCCCeeeEeEC-C-EEEEEEEHHHhhccCc-------cccHHHh----------------CCCCCeEECCCCCHHH
Confidence 345567788999986 6 9999999999964311 1134443 3456788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||++++|+++|+++..|+++
T Consensus 74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 54
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.48 E-value=1.6e-13 Score=83.16 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=72.4
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+++.+||+|+ + +++|+++..|+......... ...++.+ .|..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~--~~~~~~~----------------~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 19 MFGERHRGYPVVDD-G-RLVGIVTLADIRRVPAEGRE--ATVLVGD----------------VMTRDPVTASPDETLRDA 78 (111)
T ss_pred HHHcCCCcceEeeC-C-eEEEEEEHHHHHHHHhcCcc--cccCHHH----------------hccCCCeEECCCCCHHHH
Confidence 45667889999998 6 99999999999643221110 0012223 345678999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999998899999999999975
No 55
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.48 E-value=1.1e-13 Score=84.21 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=72.0
Q ss_pred ccCCCCceeeEeeCCCceeEEEeecccccc-CcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRG-CHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
|.+++.+.+||+++ + +++|+++..|+.. +....... ...++.++ |..++.++.+++++.+
T Consensus 19 ~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~~-~~~~v~~i----------------~~~~~~~v~~~~~l~~ 79 (113)
T cd04587 19 MREKRVSCVLVMDG-N-KLVGIFTSKDIALRVVAQGLDP-ESTLVERV----------------MTPNPVCATSDTPVLE 79 (113)
T ss_pred HHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHHhcCCCc-CcCCHHHh----------------cCCCCeEEcCCCCHHH
Confidence 55677889999987 6 9999999999952 21111000 01234443 4557789999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++.+.+||++++++++|+||..|++.
T Consensus 80 ~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 80 ALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999999998899999999999875
No 56
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.48 E-value=8.6e-14 Score=88.74 Aligned_cols=96 Identities=14% Similarity=0.250 Sum_probs=74.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
.|++++++.+||+++ + +++|.||..++-....+...+.....+.++| ..++.+|++++++..
T Consensus 90 lM~~~g~SQlPVi~~-~-k~VGsItE~~iv~~~le~~e~i~~~~vr~vM----------------~e~fP~Vs~~~~l~v 151 (187)
T COG3620 90 LMRDKGISQLPVIEE-D-KVVGSITENDIVRALLEGMESIRSLRVREVM----------------GEPFPTVSPDESLNV 151 (187)
T ss_pred HHHHcCCccCceeeC-C-eeeeeecHHHHHHHHhccccchhhhhHHHHh----------------cCCCCcCCCCCCHHH
Confidence 477899999999987 5 8999999999954422222333455666655 558999999999988
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+-.++..+ ..+.|++ +|+++||||+.|+++.+..
T Consensus 152 I~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 152 ISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHhc
Confidence 87766655 5677884 8999999999999998764
No 57
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=2.7e-13 Score=83.43 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=72.0
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH---------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEE
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ---------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTC 74 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v 74 (126)
|.+++++.+||+|+ + +++|+++..|+......... .+...++.+ +|..++.++
T Consensus 19 l~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v 80 (121)
T cd04633 19 MLDHDISRLPVIEG-G-KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----------------IMTRPVITI 80 (121)
T ss_pred HHHcCCCeeEEEEC-C-EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----------------HccCCceEE
Confidence 45678889999997 6 99999999999654221111 011112222 345678899
Q ss_pred eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.+++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999997 99999999999985
No 58
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=4.2e-13 Score=82.81 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=73.0
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH-------Hh--hhhhcHHHHHHHHhcCCCCCCCccccccceEE
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL-------QT--WLPLTALEFTQQVLTSPLFSESNTTQQRELLT 73 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~ 73 (126)
+|.+++++.+||+|+ + +++|+++..|+........ .+ ....++.+ .|..++.+
T Consensus 18 ~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 79 (122)
T cd04637 18 IFEKHKFHHLLVVED-N-ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----------------IMTRDPIT 79 (122)
T ss_pred HHHhCCCCEEEEEeC-C-eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----------------hhcCCCee
Confidence 356678899999997 6 9999999999954321110 00 00112223 34557889
Q ss_pred EeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 74 CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+.+++++.++++.|.+++...+||+|++++++|++++.|+++
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 80 VSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 999999999999999999999999998899999999999985
No 59
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.47 E-value=4.2e-13 Score=100.00 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=79.0
Q ss_pred CCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHH
Q 039385 7 PNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGK 86 (126)
Q Consensus 7 ~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~ 86 (126)
+++..++|+|+++ +++|+++.+|+..... ..++.++| ++++.++++++++.+|++.
T Consensus 165 ~~~~~v~Vvd~~~-~l~GvV~l~dLl~a~~-------~~~v~~im----------------~~~~~~v~~~~~~~eal~~ 220 (449)
T TIGR00400 165 EDIYTLYVTNESK-HLKGVLSIRDLILAKP-------EEILSSIM----------------RSSVFSIVGVNDQEEVARL 220 (449)
T ss_pred cceeEEEEECCCC-eEEEEEEHHHHhcCCC-------CCcHHHHh----------------CCCCeeECCCCCHHHHHHH
Confidence 4567889999887 9999999999854321 12455544 5578899999999999999
Q ss_pred HHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385 87 ALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125 (126)
Q Consensus 87 m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~ 125 (126)
|.+++...+||+|++|+++|+||..|+++.+.+...+|.
T Consensus 221 m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~ 259 (449)
T TIGR00400 221 IQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDF 259 (449)
T ss_pred HHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999988766553
No 60
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=5.2e-13 Score=80.16 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=71.0
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+++...+||+| ++ +++|+++..|+..... ..++.++ |..++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~V~d-~~-~~~Giv~~~~l~~~~~-------~~~~~~~----------------~~~~~~~v~~~~~l~~ 72 (105)
T cd04599 18 LMEKHRIGGLPVVE-DG-KLVGIITSRDVRRAHP-------NRLVADA----------------MTREVVTISPEASLLE 72 (105)
T ss_pred HHHHcCCCEEEEEE-CC-EEEEEEehHHhhcccc-------cCCHHHH----------------ccCCCEEECCCCCHHH
Confidence 35667888999998 46 9999999999965421 1134443 3457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+++...+||+|+ |+++|+||..+++.
T Consensus 73 ~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 73 AKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999999999999996 99999999999873
No 61
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=2.4e-13 Score=83.06 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=69.3
Q ss_pred ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCC--CCH
Q 039385 4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD--SPL 80 (126)
Q Consensus 4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~--~~l 80 (126)
|.+++ ...+||+| ++ +++|+++..|+........ .....++.++ |..++.++.++ +++
T Consensus 19 ~~~~~~~~~~~v~~-~~-~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~----------------~~~~~~~v~~~~~~~l 79 (115)
T cd04620 19 MSQQGDSSCVLVVE-KG-RLLGIFTERDIVRLTAIGK-DLSDLPIGEV----------------MTQPVVTLQESEIQDI 79 (115)
T ss_pred HHhcCCCceEEEcC-CC-cEEEEEeHHHHHHHHhcCC-CccccCHHHh----------------cCCCcEEEecccccCH
Confidence 44556 56677776 46 8999999999964322110 0111244444 34577888887 789
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 99999999999999999998899999999999986
No 62
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.8e-13 Score=85.82 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=73.2
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhh--hc----H-HHHHHHHhcCCCCCCCccccccceEEEe
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLP--LT----A-LEFTQQVLTSPLFSESNTTQQRELLTCQ 75 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~m~~~~~~v~ 75 (126)
+|.+.+++.+||+|+++ +++|+++..|+............. .. . .+..+.+. ..+ ...+|.+++.++.
T Consensus 18 ~~~~~~~~~~~V~d~~~-~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-v~~~~~~~~~~v~ 92 (132)
T cd04636 18 ILLTGKISGVPVVDNEG-RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLL---GKK-VEEIMTKKVITVD 92 (132)
T ss_pred HHHHhCCCccceECCCC-CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHc---CCC-HHHhccCCceEEC
Confidence 34567889999999887 999999999995432111000000 00 0 00000000 001 1124566788999
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 76 VDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 76 ~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++++.+++..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 93 EDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999999999999997 99999999999985
No 63
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-13 Score=102.85 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=82.0
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|..++++++.++++++ .+.|++|.+|++........+ ...++++ +|+.|++++..++.+.+|
T Consensus 175 m~~~gv~s~v~l~~~~-~~~GIvT~~dl~~~v~~~g~~-~~~~V~e----------------vmT~p~~svd~~~~~feA 236 (610)
T COG2905 175 MKDEGVSSLVVLDDSG-PLLGIVTRKDLRSRVIADGRS-KTQKVSE----------------VMTSPVISVDRGDFLFEA 236 (610)
T ss_pred HHhcCCCeEEEEcCCC-CccceeehHHHHHHHHhcCCC-cccchhh----------------hhccCceeecCcchHHHH
Confidence 4578999999999888 999999999996542222111 2335566 557799999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~ 121 (126)
+-.|.+++++++||++ +|+++|+||..||++.+.+..
T Consensus 237 ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~ 273 (610)
T COG2905 237 MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQNS 273 (610)
T ss_pred HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCCCc
Confidence 9999999999999998 799999999999999987644
No 64
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.45 E-value=3.5e-13 Score=81.92 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=74.6
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
.|.+.+++.+||+|+++ +++|+++..|+..+.... ..+...++.++ |.+++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~-~~~~~~~v~~~----------------~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 18 VIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDP-SLYDLVVASDI----------------MTKPPVVVYPEDSLED 79 (114)
T ss_pred HHHhCCCcceeEECCCC-CEEEEEEHHHHHHHHhcc-cccccEEHHHh----------------ccCCCcEEcCCCCHHH
Confidence 35667888999999887 999999999996432111 00111344443 4557899999999999
Q ss_pred HHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~ 115 (126)
+++.|.+.+...+||+++ +++++|+++..|++.
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 999999999999999997 799999999999875
No 65
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=3.4e-13 Score=81.99 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=71.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccc-cCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLR-GCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
|.+.+...+||+|+ + +++|+++..|+. ....... .....++.++ |...+.++.+++++.+
T Consensus 19 ~~~~~~~~~~v~~~-~-~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~v~~~~~~~~ 79 (113)
T cd04622 19 MREHDVGALPVCEN-D-RLVGIVTDRDIVVRAVAEGR-DPDTTTVGDV----------------MTRGVVTVTEDDDVDE 79 (113)
T ss_pred HHHcCCCEEEEeeC-C-EEEEEEEhHHHHHHHhhccC-CcccCCHHHh----------------ccCCccEECCCCCHHH
Confidence 45667889999997 6 999999999985 2211110 0011124443 4457788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|...+.+.+||++++|+++|++++.|+++
T Consensus 80 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 80 AARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999975
No 66
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.44 E-value=4.4e-13 Score=80.74 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+++.+||+|+ + +++|+++..|+.... ..++.++ |..++.++.++.++.+
T Consensus 18 ~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~--------~~~~~~~----------------~~~~~~~v~~~~~l~~ 71 (104)
T cd04594 18 IMIENDLLSLPVVDY-N-KFLGAVYLKDIENAT--------YGDVVDY----------------IVRGIPYVRLTSTAEE 71 (104)
T ss_pred HHHHcCCcEEEEEEC-C-EEEEEEEHHHHhhhc--------ccchhhh----------------hhcCCcEEcCCCCHHH
Confidence 355678899999997 6 999999999986421 1123333 3446789999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++..|.+++...+||++ +|+++|++|..|++.
T Consensus 72 a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 72 AWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999998 699999999999875
No 67
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.44 E-value=1e-12 Score=98.88 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=78.8
Q ss_pred ccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 4 YKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
|.+++++.+||+|+. +++++|++|.+|+.... ....++.++|.. ..++.++.+++++.
T Consensus 126 m~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIMt~--------------~~~lvtv~~~~sL~ 185 (505)
T PLN02274 126 KASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVMTS--------------DDDLVTAPAGIDLE 185 (505)
T ss_pred HHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHhcc--------------CCCcEEECCCCCHH
Confidence 567889999999974 23999999999996442 123467776622 12378999999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++++.|.+++.+.+||+|++++++|+||++|+++.+.-
T Consensus 186 eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 186 EAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999989999999999999998753
No 68
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.44 E-value=6.2e-13 Score=98.01 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=77.5
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++++.+||++++..+++|+++.+|+.....+ ...+..++ |+ ++.++++++++.++
T Consensus 219 ~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~l~~~----------------~~-~~~~Vpe~~~l~~l 276 (408)
T TIGR03520 219 IIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-----KNFDWQSL----------------LR-EPYFVPENKKLDDL 276 (408)
T ss_pred HHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-----CCCCHHHH----------------cC-CCeEeCCCCcHHHH
Confidence 5678999999998764589999999999532111 01123332 33 67899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~ 121 (126)
++.|.+++.+..+|+|+.|..+|+||..|+++.+....
T Consensus 277 l~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei 314 (408)
T TIGR03520 277 LRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI 314 (408)
T ss_pred HHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence 99999999999999999999999999999999986543
No 69
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.43 E-value=6.3e-13 Score=101.69 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=77.0
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++.+.+||+|+++ +++|+++.+|+.....+.. +....++.+ .|.+++.++++++++.++
T Consensus 473 l~~~~~~~~~VvD~~g-~lvGiVt~~dL~~~l~~~~-~~~~~~v~d----------------im~~~~~~v~~d~~L~~a 534 (574)
T PRK01862 473 FLEYPVKYLYVVDDDG-RFRGAVALKDITSDLLDKR-DTTDKTAAD----------------YAHTPFPLLTPDMPLGDA 534 (574)
T ss_pred HHhCCCceEEEEcCCC-eEEEEEEHHHHHHHhhccc-ccccchHHH----------------hccCCCeeECCCCCHHHH
Confidence 4567889999999887 9999999999964211110 001123344 445678899999999999
Q ss_pred HHHHHhcCCCEEEEEcCC--CceEEEEeHHHHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQ--RLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~--~~lvGivs~~dil~~~~~ 119 (126)
+++|.+++.+.+||+|++ ++++|+||++|+++.+.+
T Consensus 535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999876 489999999999998865
No 70
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=7.5e-13 Score=80.31 Aligned_cols=91 Identities=26% Similarity=0.301 Sum_probs=71.7
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccC-cHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGC-HYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
|.+.+++.+||+|+ + +++|+++..|+... ..... ....++.+++ ..++.++.+++++.+
T Consensus 19 ~~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~--~~~~~i~~~~----------------~~~~~~v~~~~~l~~ 78 (111)
T cd04800 19 MTEHRVSSLLVVDD-G-RLVGIVTDRDLRNRVVAEGL--DPDTPVSEVM----------------TAPPITIPPDATVFE 78 (111)
T ss_pred HHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHhccCC--CccCCHHHHh----------------CCCCeEECCCCcHHH
Confidence 45677889999997 6 99999999999642 11110 0122445543 457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 999999999999999996 99999999999975
No 71
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.43 E-value=5.2e-13 Score=80.88 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred ccCCCCceeeEeeC---CCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385 4 YKKPNVERNSISLG---NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80 (126)
Q Consensus 4 ~~~~~~~~~pVvd~---~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l 80 (126)
+.+++...+||+|+ ++ +++|+++..|+...... + |..++.++++++++
T Consensus 20 ~~~~~~~~~~V~~~~~~~~-~~~G~v~~~dl~~~~~~------------~----------------m~~~~~~v~~~~~l 70 (105)
T cd04591 20 LSTTSHNGFPVVDSTEESP-RLVGYILRSQLVVALKN------------Y----------------IDPSPFTVSPRTSL 70 (105)
T ss_pred HHhCCCCCcceEcCCCCCC-EEEEEEeHHHHHHHHHH------------h----------------ccCCCceECCCCcH
Confidence 45667888999998 56 99999999998532110 2 34577899999999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus 71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 9999999999999999996 789999999999975
No 72
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.42 E-value=1.2e-12 Score=97.84 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=76.7
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+ + +++|++|.+|+..... ..++.++ |+.+++++.+++++.+|
T Consensus 114 m~~~~~~~~vVvD~-g-klvGIVT~rDL~~~~~-------~~~V~dI----------------Mt~~litv~~~~sL~eA 168 (475)
T TIGR01303 114 IHKRAHGAAVVILE-D-RPVGLVTDSDLLGVDR-------FTQVRDI----------------MSTDLVTAPADTEPRKA 168 (475)
T ss_pred HHhcCCeEEEEEEC-C-EEEEEEEHHHhhcCCC-------CCCHHHH----------------ccCCceEeCCCCcHHHH
Confidence 56678888999884 5 8999999999964421 1245554 45688999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
+.+|.+++++.+||+|++++++|+||.+||++.....
T Consensus 169 l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 169 FDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 9999999999999999889999999999999976544
No 73
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.40 E-value=1.2e-12 Score=80.46 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=72.9
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHH--------hhhhhcHHHHHHHHhcCCCCCCCccccccceEEE
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQ--------TWLPLTALEFTQQVLTSPLFSESNTTQQRELLTC 74 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v 74 (126)
+|.+.+.+.+||+|+++ +++|+++..|+......... .....++.++ |..++.++
T Consensus 18 ~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~i 80 (121)
T cd04584 18 LMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI----------------MTKDVITV 80 (121)
T ss_pred HHHHcCCCcccEECCCC-cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH----------------hhCCCeEE
Confidence 34567788999999887 99999999998643221100 0111233343 34577899
Q ss_pred eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.+++++.++++.|.+.+...+||+++ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999975
No 74
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.39 E-value=1.3e-12 Score=79.34 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=71.6
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+...+||+|+ + ++.|+++..|+........ ...+.++.+++ ..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~----------------~~~~~~v~~~~~l~~~ 79 (111)
T cd04589 19 MREHGADALLVRDG-D-PRLGIVTRTDLLDAVLLDG-LPSSTPVGEIA----------------TFPLITVDPDDFLFNA 79 (111)
T ss_pred HHHcCCCEEEEecC-C-eEEEEEEHHHHHHHHHcCC-CCCCCCHHHHh----------------CCCcEEECCCCcHHHH
Confidence 45667888999998 6 8999999999864321110 01123445543 4577899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.|.+++.+.+||++ +++++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~ 110 (111)
T cd04589 80 LLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHhCccEEEEee-CCEEEEEEEhHHhhc
Confidence 9999999999999998 489999999999976
No 75
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=1.7e-12 Score=78.84 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=71.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+.+.+.+||+|+ + +++|+++..|+..............++.++ |..++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~l~~ 79 (112)
T cd04802 18 IMTENNIGRLIVVDN-E-KPVGIITERDLVKKVVSRNLKPREVPVGEV----------------MSTPLITIDPNASLNE 79 (112)
T ss_pred HHHHCCCCEEEEEEC-C-EEEEEEEHHHHHHHHhhccCCcccCCHHHh----------------cCCCcEEECCCCCHHH
Confidence 356677899999985 5 899999999996421111000012234443 3457889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++++|.+.+.+.+||+|++ +++|+|++.|+++
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 80 AAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 9999999999999999965 9999999999875
No 76
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.39 E-value=1.4e-12 Score=97.26 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=77.8
Q ss_pred cccCCCCceeeEeeCC---CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-cceEEEeCCC
Q 039385 3 WYKKPNVERNSISLGN---GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQVDS 78 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~---~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~v~~~~ 78 (126)
.+.+++++.+||+|++ + +++|+++.+|+.... . ...++.++| + .++.++.+++
T Consensus 105 ~m~~~~~s~lpVvd~~~~~~-~lvGIVt~rDL~~~~--~----~~~~V~dvm----------------~~~~~~~V~~~~ 161 (450)
T TIGR01302 105 LMERKGISGIPVVEDGDMTG-KLVGIITKRDIRFVK--D----KGKPVSEVM----------------TREEVITVPEGI 161 (450)
T ss_pred HHHHcCCCEEEEEeCCCCCC-eEEEEEEHHHHhhhh--c----CCCCHHHhh----------------CCCCCEEECCCC
Confidence 3567889999999987 5 999999999996321 1 123555654 4 3789999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++++.|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus 162 sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 162 DLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred cHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 9999999999999999999999999999999999998763
No 77
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.39 E-value=1.3e-12 Score=98.17 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=77.8
Q ss_pred cccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCC
Q 039385 3 WYKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDS 78 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~ 78 (126)
+|.+++++.+||+|++ +++++|+++.+|+..... ...++.++| ++ ++.++.+++
T Consensus 121 lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~------~~~~V~diM----------------t~~~~lvtv~~~~ 178 (495)
T PTZ00314 121 IKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD------KSTPVSEVM----------------TPREKLVVGNTPI 178 (495)
T ss_pred HHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc------CCCCHHHhh----------------CCcCCceEeCCCC
Confidence 4677899999999974 239999999999964321 123566655 33 788999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.+++++|.+++.+.+||+|++++++|+||++|+++..
T Consensus 179 sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 179 SLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 999999999999999999999999999999999999874
No 78
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.39 E-value=1.5e-12 Score=78.31 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=73.3
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
+|.+++...+||+|+++ +++|+++..|+.......... ....+.+ .|..++.++.+++++.+
T Consensus 18 ~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 18 LMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGLD-PLVTVGD----------------VMTRDVVTVSPDTSLEE 79 (113)
T ss_pred HHHhcCCceEEEECCCC-CEEEEEeHHHHHHHHHhccCC-ccccHHH----------------HhcCCceecCCCcCHHH
Confidence 45667789999999877 999999999995432221100 0001222 23457788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++..|.+.+.+.+||+|++++++|+++..|+++
T Consensus 80 ~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 80 AAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
No 79
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.38 E-value=1.3e-12 Score=78.89 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=69.1
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
.|.+++++.+||+|+ + +++|+++..|+.......... ...++.+++ ..++.++++++++.+
T Consensus 18 ~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~-~~~~~~~~~----------------~~~~~~v~~~~~l~~ 78 (110)
T cd04609 18 RMREYGVSQLPVVDD-G-RVVGSIDESDLLDALIEGKAK-FSLPVREVM----------------GEPLPTVDPDAPIEE 78 (110)
T ss_pred HHHHcCCceeeEeeC-C-eeEEEEeHHHHHHHHhccccc-cCcCHHHHh----------------cCCCceeCCCCcHHH
Confidence 356678899999997 6 999999999996542221110 112444443 446788999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++..|.+ . ..+||++++|+++|+||++|+++
T Consensus 79 ~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 79 LSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 9999887 3 34789988899999999999975
No 80
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.37 E-value=3.4e-12 Score=95.96 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=76.9
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc-cceEEEeCCCCHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ-RELLTCQVDSPLSE 82 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~v~~~~~l~~ 82 (126)
|.+++++.+||+|+++ +++|+++.+|+.... . ...++.++| . ++++++.+++++.+
T Consensus 113 m~~~~~~~lpVvd~~g-~lvGiVt~~DL~~~~--~----~~~~V~dim----------------~~~~~v~v~~~~sl~e 169 (486)
T PRK05567 113 MARYGISGVPVVDENG-KLVGIITNRDVRFET--D----LSQPVSEVM----------------TKERLVTVPEGTTLEE 169 (486)
T ss_pred HHHhCCCEEEEEccCC-EEEEEEEHHHhhhcc--c----CCCcHHHHc----------------CCCCCEEECCCCCHHH
Confidence 4567899999999877 999999999995321 1 122455544 3 57899999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+++.|.+++.+.+||+|++|+++|+||+.|+++.+.
T Consensus 170 al~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 170 ALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 999999999999999999999999999999998763
No 81
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.2e-11 Score=74.49 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=69.8
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+.+.+.+||+++++ +++|+++..++...... .+..++ |..++.++.+++++.++
T Consensus 19 ~~~~~~~~~~v~~~~~-~~~g~v~~~~l~~~~~~-------~~~~~~----------------~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 19 LKEYKVSGVPVVKKSG-ELVGIITRKDLLRNPEE-------EQLALL----------------MTRDPPTVSPDDDVKEA 74 (106)
T ss_pred HHHcCCCeEEEEcCCC-cEEEEEEHHHHHhcccc-------chHHHH----------------hcCCCceECCCCCHHHH
Confidence 4566788999999876 99999999998532111 123332 34577889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+..|.+.+.+.+||+| +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999 479999999999875
No 82
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=9.9e-12 Score=76.20 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=69.0
Q ss_pred ccCCC-CceeeEeeCCCceeEEEeeccccccCcHHH--HHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCH
Q 039385 4 YKKPN-VERNSISLGNGWRLIGTFSASDLRGCHYAV--LQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPL 80 (126)
Q Consensus 4 ~~~~~-~~~~pVvd~~~~~l~G~is~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l 80 (126)
+...+ ++.+||+|+ + +++|+++..|+....... ...+...++.+ .|..++.++.+++++
T Consensus 19 ~~~~~~~~~~~Vvd~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~----------------~~~~~~~~v~~~~~~ 80 (119)
T cd04598 19 FERDPDLSALAVVDD-G-RPVGLIMREALMELLSTPYGRALYGKKPVSE----------------VMDPDPLIVEADTPL 80 (119)
T ss_pred HHhCCCccEEEEEEC-C-eeEEEEEHHHHHHHHhchhhHHHHcCCcHHH----------------hcCCCcEEecCCCCH
Confidence 44444 789999998 7 999999999996431111 00001223333 445688999999999
Q ss_pred HHHHHHHHhcCCC---EEEEEcCCCceEEEEeHHHHHH
Q 039385 81 SEVIGKALTKHVH---RVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 81 ~~~~~~m~~~~~~---~lpVvd~~~~lvGivs~~dil~ 115 (126)
.+++..|.+++.. ..||++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999888754 4468888899999999999875
No 83
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1.4e-11 Score=78.45 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=72.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHH--Hh--------hhhhcHH------HHHHHHhcCCCCCCCcccc
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVL--QT--------WLPLTAL------EFTQQVLTSPLFSESNTTQ 67 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~--~~--------~~~~~~~------~~~~~~~~~~~~~~~~~~m 67 (126)
+.+.+++.+||+|+ + +++|+++..|+........ .. ....++. ++..........+ ....|
T Consensus 19 ~~~~~~~~~~Vvd~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~ 95 (143)
T cd04634 19 LRENKISGAPVLDG-G-KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKRALTDAGKMK-VRDIM 95 (143)
T ss_pred HHHcCCCcceEeEC-C-eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHHHHHHHhcCC-HHHHc
Confidence 45678899999997 6 9999999999854311110 00 0000111 1111000000000 11245
Q ss_pred ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
..++.++.+++++.+++..|.+.+...+||+++ ++++|+++..|+++
T Consensus 96 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 96 TKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 668899999999999999999999999999996 99999999999874
No 84
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.3e-11 Score=91.38 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHH
Q 039385 6 KPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIG 85 (126)
Q Consensus 6 ~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~ 85 (126)
...+..+.|+|+++ ++.|++|.+++....++. .+.++| .+.+.++.++++.+++.+
T Consensus 165 ~e~~~~lyVvD~~~-~L~Gvvsl~~Ll~a~~~~-------~i~~im----------------~~~~~~V~~~~dqeevA~ 220 (451)
T COG2239 165 AETIYYLYVVDEKG-KLLGVVSLRDLLTAEPDE-------LLKDLM----------------EDDVVSVLADDDQEEVAR 220 (451)
T ss_pred ccccceEEEECCcc-ceEEEeeHHHHhcCCcHh-------HHHHHh----------------cccceeecccCCHHHHHH
Confidence 35678899999998 999999999997543333 455544 456899999999999999
Q ss_pred HHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhhhhc
Q 039385 86 KALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125 (126)
Q Consensus 86 ~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~~~~ 125 (126)
.+.+++.-.+||||++++++|+||..|++..+.+...+|+
T Consensus 221 ~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi 260 (451)
T COG2239 221 LFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDI 260 (451)
T ss_pred HHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887775
No 85
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.29 E-value=9.1e-12 Score=86.97 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=69.5
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHH
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSE 82 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~ 82 (126)
++.+.+++.+||+|+++ +++|+++..|+....... .....++.+ +|.+++.++.+++++.+
T Consensus 181 ~~~~~~~~~~~Vvd~~g-~~~Givt~~dl~~~~~~~--~~~~~~v~~----------------im~~~~~~v~~~~~l~~ 241 (268)
T TIGR00393 181 EMSEKRLGSAIVCDENN-QLVGVFTDGDLRRALLGG--GSLKSEVRD----------------FMTLGPKTFKLDALLLE 241 (268)
T ss_pred HHhhcCCcEEEEEeCCC-CEEEEEEcHHHHHHHhcC--CcccCcHHH----------------hCCCCCeEECCCCcHHH
Confidence 35567889999999887 999999999996431111 001224444 44567889999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEEe
Q 039385 83 VIGKALTKHVHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 83 ~~~~m~~~~~~~lpVvd~~~~lvGivs 109 (126)
|+++|.+.+.+.+||+|++|+++|+|+
T Consensus 242 a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 242 ALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 999999999999999998899999985
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=75.62 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=71.4
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.++++..+||++.. +++|++|.+|+.......... ..++.+ +|..++.++.++.++.++
T Consensus 25 m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~--~~~v~~----------------v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 25 MSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKR--LLPVKE----------------VMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred HHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCc--cccHHH----------------hccCCcEEECCCCCHHHH
Confidence 567889999999853 699999999996542222110 002333 445588999999999999
Q ss_pred HHHHHh-cCCCEEEEEcCCC-ceEEEEeHHHHH
Q 039385 84 IGKALT-KHVHRVWVVDQQR-LLLGLVSLTDMI 114 (126)
Q Consensus 84 ~~~m~~-~~~~~lpVvd~~~-~lvGivs~~dil 114 (126)
++.|.+ +++..+||+++++ +++|++|..|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999886 999999999874
No 87
>PRK11573 hypothetical protein; Provisional
Probab=99.23 E-value=6.9e-11 Score=87.32 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=78.6
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++++.+||++++-..++|++..+|+....... . ..+..++.+ .+ +++.+|+++.++.++
T Consensus 215 ~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~-~---~~~~~~l~~-------------~~-r~~~~Vpe~~~l~~l 276 (413)
T PRK11573 215 LTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-K---EFTKENMLR-------------AA-DEIYFVPEGTPLSTQ 276 (413)
T ss_pred HHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc-C---cCCHHHHHh-------------hc-cCCeEeCCCCcHHHH
Confidence 46789999999987645899999999996431111 0 011222211 22 477889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
++.|.+++.|...|+|+.|...|+||..||++.+...+.
T Consensus 277 L~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~ 315 (413)
T PRK11573 277 LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFT 315 (413)
T ss_pred HHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999876653
No 88
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.21 E-value=3.6e-11 Score=91.64 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=50.2
Q ss_pred cccc-cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 65 TTQQ-RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 65 ~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+|+ +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+++...
T Consensus 250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 3788 88999999999999999999999999999999999999999999998654
No 89
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.13 E-value=1.7e-10 Score=86.17 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=69.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
|.+++++.+||+|+++ +++|+++..|+........ .....++.++| ..++.++.+++++.++
T Consensus 361 m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~-~~~~~~v~~im----------------~~~~~~v~~~~~l~~a 422 (454)
T TIGR01137 361 LREYGFDQLPVVTEAG-KVLGSVTLRELLSALFAGK-ANPDDAVSKVM----------------SKKFIQIGEGEKLSDL 422 (454)
T ss_pred HHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhccC-CCcCCCHHHhc----------------CCCCeEECCcCcHHHH
Confidence 5567889999999877 9999999999964211110 01122455544 5577899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
+.+|.+++ .|||+++++++|+||++|+++.+
T Consensus 423 ~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 423 SKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 99998753 34555579999999999999875
No 90
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=85.05 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=77.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.+++++.+||++++...++|++..+|+......... ...... .. .+++.+++++++.++
T Consensus 234 ~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~----------------~~-~~~~~Vpet~~~~~l 293 (429)
T COG1253 234 ILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRV----------------LV-RPPLFVPETLSLSDL 293 (429)
T ss_pred HHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhh----------------cc-cCCeEecCCCcHHHH
Confidence 4578899999999444489999999999533111100 001111 11 277889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
++.|.+.+.|...|+|+.|...|+||+.||++.+...+.
T Consensus 294 L~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 294 LEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred HHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999987655
No 91
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.10 E-value=1.4e-10 Score=73.25 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=61.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHH-HHhh---------hhhcHHHHHHHHhcCCCCCCCccccccceEE
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAV-LQTW---------LPLTALEFTQQVLTSPLFSESNTTQQRELLT 73 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~ 73 (126)
|.+++++.+||+|+++ +++|++|..|+....... .... ....+.+++.... ..+.|..++++
T Consensus 19 m~~~~~~~~~VvD~~g-~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-------~~~~~~~~~~~ 90 (133)
T cd04592 19 MLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-------SYGGQECGLWT 90 (133)
T ss_pred HHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh-------hhcccCCCCEE
Confidence 4567889999999888 999999999986432111 0000 0000122321100 00124567899
Q ss_pred EeCCCCHHHHHHHHHhcCCCEEEEEcCCC
Q 039385 74 CQVDSPLSEVIGKALTKHVHRVWVVDQQR 102 (126)
Q Consensus 74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~ 102 (126)
+.+++++.+|++.|.+++.+.+||+|+++
T Consensus 91 v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 91 CTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred ECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 99999999999999999999999998544
No 92
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2.7e-09 Score=78.62 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=73.7
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+...+.+.++|+|+++ ++.|.++.+++....... .++.+.+ .....++.+++++.++
T Consensus 303 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~~~~~ 359 (400)
T PRK10070 303 LQDEDREYGYVIERGN-KFVGAVSIDSLKTALTQQ------QGLDAAL----------------IDAPLAVDAQTPLSEL 359 (400)
T ss_pred HHhcCCceEEEEcCCC-cEEEEEeHHHHHhhhhcC------Cchhhhh----------------ccCCceeCCCCCHHHH
Confidence 4557788999999988 999999999995432111 1233322 2356789999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
+..+.+.... +||+|++|+++|+||+.++++.+.+.
T Consensus 360 ~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 360 LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 9999987666 99999999999999999999998654
No 93
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.95 E-value=4.2e-09 Score=76.71 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=72.7
Q ss_pred cCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHH
Q 039385 5 KKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVI 84 (126)
Q Consensus 5 ~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~ 84 (126)
...+...+.|+|+++ ++.|.++.+++....... ..+.+.+ ...+.++.+++++.+++
T Consensus 269 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 269 RDERVDSLYVVDRQN-KLVGVVDVESIKQARKKA------QGLQDVL----------------IDDIYTVDAGTLLRETV 325 (363)
T ss_pred HhcCCceEEEEcCCC-CEEEEEeHHHHHHHhhcC------Cchhhhh----------------ccCCceECCCCcHHHHH
Confidence 345677889999888 999999988885321111 1233322 34567899999999999
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
..|.+++.. +||+|++|+++|+||+.+++..+.+.
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 999999888 99999999999999999999998754
No 94
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.85 E-value=3.6e-09 Score=74.05 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=51.5
Q ss_pred CccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 63 SNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 63 ~~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
+.++|+++++++.+++++.+|.+.|.+++++.+||+|++.+++|+|+++|+++..
T Consensus 247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA 301 (382)
T ss_pred HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence 4459999999999999999999999999999999999999999999999999843
No 95
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.82 E-value=1.9e-08 Score=60.12 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=43.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~ 117 (126)
.+.++.+++++.+|.+.|.+++.+.+||+|++ |+++|++|..|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 46889999999999999999999999999974 8999999999998753
No 96
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.81 E-value=9.1e-09 Score=74.73 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred ccCCCCceeeEeeCC--CceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHH
Q 039385 4 YKKPNVERNSISLGN--GWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLS 81 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~--~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~ 81 (126)
+.+++++.+||.... +++|+|+||.+|+..+. +. ...+.+ +|++...+.+.+.++.
T Consensus 134 k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~-~~-----~~~~~~----------------vmt~~~~~~~~gi~l~ 191 (503)
T KOG2550|consen 134 KEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLE-DN-----SLLVSD----------------VMTKNPVTGAQGITLK 191 (503)
T ss_pred cccccccccccccCCcccceeEEEEehhhhhhhh-cc-----cchhhh----------------hcccccccccccccHH
Confidence 457899999999643 35899999999997661 11 123344 4555668889999999
Q ss_pred HHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++-+++.+.+...+||||++++++-+++++|+.+.
T Consensus 192 ~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 192 EANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 99999999999999999999999999999999875
No 97
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.80 E-value=3e-08 Score=50.53 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=43.1
Q ss_pred eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
+.++.+++++.+++..|.+++.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999998764
No 98
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.80 E-value=1.9e-08 Score=61.66 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=46.0
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 66678889999999999999999999999999998899999999999864
No 99
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=3.1e-08 Score=60.80 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=45.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 5688999999999999999999999999998999999999999997653
No 100
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.79 E-value=4.1e-08 Score=62.00 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=46.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+++.+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 56889999999999999999999999999988999999999999987753
No 101
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.78 E-value=1.3e-08 Score=65.31 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=51.8
Q ss_pred ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
..+|..|+++|.+++++.++...|.++++.++||++ +++++|-||-.+|.+...+.
T Consensus 68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLEG 123 (187)
T ss_pred hhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhcc
Confidence 458999999999999999999999999999999999 49999999999999987544
No 102
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.77 E-value=2.1e-08 Score=68.91 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=50.8
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
.|+++++++.+++|+.++.+.|.+++++..||+|+ ++++|++|.+|+..++.+.
T Consensus 177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG 230 (294)
T ss_pred hccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC
Confidence 78889999999999999999999999999999995 5999999999999998873
No 103
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.73 E-value=5.7e-08 Score=57.71 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 56789999999999999999999999999988999999999999863
No 104
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.72 E-value=1.1e-07 Score=58.98 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=46.2
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+++.++.+++++.++++.|.+++...+||+|++++++|+++..++++.+..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 367889999999999999999999999999988999999999999976543
No 105
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.69 E-value=1e-07 Score=57.81 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=45.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++..|+++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 4678999999999999999999999999998899999999999998765
No 106
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3.1e-08 Score=71.34 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHH
Q 039385 6 KPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIG 85 (126)
Q Consensus 6 ~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~ 85 (126)
++-.+.+|+..++-..++|++..+|+..+..+.- .....++++. -.++.++++.+++.+-+.
T Consensus 230 ~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~~~~--------------a~epyFVPe~Tpl~~QL~ 291 (423)
T COG4536 230 HSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDILRA--------------ADEPYFVPEGTPLSDQLV 291 (423)
T ss_pred hCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHHHHH--------------hcCCeecCCCCcHHHHHH
Confidence 4567889999887668999999999965422210 1123333321 136678999999999999
Q ss_pred HHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 86 KALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 86 ~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
.|.+++-|.-.||||.|.+.|+||..||++.+-..+.
T Consensus 292 ~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 292 AFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred HHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 9999999999999999999999999999999887766
No 107
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=2.2e-07 Score=55.94 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=45.4
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+++.++.++.++.++++.|.+++...+||+|++|+++|+++..++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 36788999999999999999999999999998899999999999987654
No 108
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=1.7e-07 Score=57.69 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=44.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+|+..|+++.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence 56889999999999999998899999999987 89999999999998654
No 109
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=2.3e-07 Score=55.89 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=45.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.++.++.++++.|.+.+.+.+||+|++++++|+++..|+++.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 56788999999999999999999999999988999999999999987653
No 110
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.63 E-value=2.5e-07 Score=55.81 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=45.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.++.++.++++.|.+.+...+||+|++|+++|+++..++++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 45789999999999999999999999999988999999999999887543
No 111
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.62 E-value=3.2e-07 Score=55.81 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=44.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+.++.+++++.+++..|.+++...+||+|++|+++|+++..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 3578899999999999999999999999999999999999999998664
No 112
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.61 E-value=2.4e-07 Score=55.40 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=43.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.+++++.++.+++..|.+.+.+.+||+|++|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 567899999999999999999999999999889999999999998754
No 113
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.61 E-value=3.2e-07 Score=56.13 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=45.2
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 5688999999999999999999999999998899999999999998764
No 114
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=2.9e-07 Score=56.55 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=46.0
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+++.++.++.++.++++.|.+.+.+.+||++++|+++|+|+..++++.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 52 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARP 52 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcc
Confidence 467889999999999999999999999999988999999999999876543
No 115
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.58 E-value=2e-07 Score=71.32 Aligned_cols=56 Identities=30% Similarity=0.347 Sum_probs=51.6
Q ss_pred cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
++|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+.+.+.+.
T Consensus 72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence 47778999999999999999999999999999999889999999999999987653
No 116
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=2.5e-07 Score=57.94 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=45.0
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
+++.++.+++++.++++.|.+++.+.+||+|++++++|+++..|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence 4678899999999999999999999999999889999999999998754
No 117
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=3.3e-07 Score=55.58 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=43.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++++++++.++++.|.+++ ...+||+|++|+++|+|+..|+++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 5678999999999999997665 889999998899999999999998764
No 118
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.57 E-value=4.4e-07 Score=56.22 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=44.2
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.++.++.++.++++.|.+.+...+||+|++++++|++|..|+...+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 567899999999999999999999999999889999999999998764
No 119
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.55 E-value=4e-07 Score=54.90 Aligned_cols=50 Identities=30% Similarity=0.443 Sum_probs=45.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.+++++.++++.|.+.+...+||+|++++++|+++..|+.+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFD 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhc
Confidence 56789999999999999999999999999988999999999999876543
No 120
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=3.4e-07 Score=57.67 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=45.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++++++++.+++..|.+++...+||+|++|+++|+++..|+++.+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 4578999999999999999999999999998899999999999998764
No 121
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=3e-07 Score=56.92 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=44.9
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+.++++++++.+++..|.+++...+||+|++|+++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 4678999999999999999999999999998899999999999998763
No 122
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=6e-07 Score=54.50 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=44.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~ 117 (126)
++.++.+++++.++++.|.+++...+||+|++ ++++|+++..|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 56889999999999999998999999999987 8999999999999865
No 123
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=4e-07 Score=54.83 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=44.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..++.+.+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA 50 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence 4678899999999999998888999999998899999999999998754
No 124
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.54 E-value=5.4e-07 Score=54.73 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=44.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 5578899999999999999999999999998899999999999998654
No 125
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=4e-07 Score=55.02 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=44.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+++...+||+|++++++|+++..++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 5678999999999999999888899999998899999999999998654
No 126
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.52 E-value=7.3e-07 Score=53.67 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=46.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHHh
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~~ 120 (126)
++.+++++.++.++++.|.+.+...+||++++ |+++|+++..++++...+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~ 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC
Confidence 56889999999999999999999999999987 9999999999999877543
No 127
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=4.6e-07 Score=55.50 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=45.0
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.+++..|.+.+.+.+||++++|+++|+++..++++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 5678999999999999999999999999998899999999999998764
No 128
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.51 E-value=2e-07 Score=68.40 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=77.1
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
..++++..+||.|.+.+.+.+++|.+-+.......... .+...++..-.....+. ....+..+..++++.+|
T Consensus 180 l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl~ig-----~~~~i~~i~~~~~v~~a 251 (381)
T KOG1764|consen 180 LIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDLGIG-----TWSNIASISEDTPVIEA 251 (381)
T ss_pred HHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHhCcc-----hhhhheeecCCCcHHHH
Confidence 35788999999995555999999999986542221110 11122222211111111 12258899999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+++|..+++..+||+|.+|+.+|++++.|+.....+
T Consensus 252 l~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 252 LKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred HHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 999999999999999999999999999999887654
No 129
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=4.2e-07 Score=56.70 Aligned_cols=50 Identities=32% Similarity=0.475 Sum_probs=45.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.+++++.++++.|.+.+...+||+|++++++|+++..++++.+..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 56789999999999999998899999999988999999999999987754
No 130
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=5.2e-07 Score=55.49 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=44.9
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~~ 119 (126)
++.++.++.++.+++.+|.+.+...+||+|++ |+++|+|+..|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 56788999999999999999999999999987 999999999999987653
No 131
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.49 E-value=1e-06 Score=52.42 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=46.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhh
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~ 121 (126)
++.++.+++++.++++.|.+.+...+||++++++++|+++..++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~ 53 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG 53 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc
Confidence 4577899999999999999999999999998899999999999998876543
No 132
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=4.1e-07 Score=54.72 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=43.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.++.+++++.+++..|.+.+.+.+||+|++|+++|+++..+++..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 67889999999999999999988999999988999999999999864
No 133
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=8.6e-07 Score=53.68 Aligned_cols=47 Identities=28% Similarity=0.470 Sum_probs=43.0
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 35788999999999999998999999999988999999999999874
No 134
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=7.9e-07 Score=55.06 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=42.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4578999999999999999899999999998899999999999985
No 135
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=5.7e-07 Score=55.08 Aligned_cols=47 Identities=32% Similarity=0.497 Sum_probs=43.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 56889999999999999998999999999988999999999999875
No 136
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=1e-06 Score=53.09 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=44.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.+++++.++.++++.|.+.+.+.+||+|++|+++|+++..|++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 5678999999999999999999999999998899999999999987654
No 137
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.47 E-value=5.6e-07 Score=64.71 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=48.2
Q ss_pred ccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 65 TTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 65 ~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++|.+ ++.++.+++|+.+|++.|.+++...+||+|++|+++|+||..|+.+.+.
T Consensus 206 dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 206 DIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred HHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 47776 8999999999999999999888888888998999999999999987654
No 138
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.46 E-value=1.2e-06 Score=52.81 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=43.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.++.+++++.++++.|.+.+...+||+|++++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA 49 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence 457889999999999999999999999999889999999999998754
No 139
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.46 E-value=1.3e-06 Score=52.31 Aligned_cols=48 Identities=33% Similarity=0.425 Sum_probs=44.0
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.++.++.++.+++..|.+.+...+||+|++++++|+++..|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 567889999999999999999999999999889999999999998765
No 140
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.46 E-value=9.6e-07 Score=52.89 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=44.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.+++++.+++..|.+++.+.+||+|+ ++++|+++..|+.+.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 5678999999999999999999999999997 999999999999998654
No 141
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.46 E-value=1.2e-06 Score=52.56 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=43.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|.+++...+||+++ ++++|+++..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~ 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHh
Confidence 5678999999999999999999999999997 99999999999998654
No 142
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.46 E-value=5.9e-07 Score=64.38 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=48.9
Q ss_pred cccccc--eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 65 TTQQRE--LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 65 ~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++|.++ +.++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+.+.
T Consensus 201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 367777 999999999999999999898999999999999999999999987654
No 143
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.7e-07 Score=63.88 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+.++..+.+||+.++...+.|++-.+||..+..... ..+.+.++. +|...|++.-.+...
T Consensus 95 iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---~~F~i~~lL-----------------RPav~VPESKrvd~l 154 (293)
T COG4535 95 IIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---EPFDIKELL-----------------RPAVVVPESKRVDRL 154 (293)
T ss_pred HHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---ccccHHHhc-----------------ccceecccchhHHHH
Confidence 345678999999888778999999999965422211 112344432 577889999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
++-+..++.|...|+|+.|.+-|.||..|++..+...+-
T Consensus 155 LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 155 LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 999999999999999999999999999999999876654
No 144
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1.8e-06 Score=52.87 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=43.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+.++..+||+|+ |+++|+++..++.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS 49 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999996 99999999999987654
No 145
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=1.1e-06 Score=55.73 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=44.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++++++++.++++.|.+.+...+||+|+ ++++|+++..++++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence 5678999999999999999999999999997 999999999999987653
No 146
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.41 E-value=1.3e-06 Score=53.14 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=43.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 4578999999999999999999999999997 99999999999998764
No 147
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.41 E-value=1.5e-06 Score=52.21 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=44.2
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc
Confidence 5678999999999999999888999999997 999999999999876644
No 148
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.40 E-value=1.6e-06 Score=52.95 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=44.2
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++++++++.+|+..|.+.+...+||+|++++++|+++..++.+...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 50 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASP 50 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhh
Confidence 5678999999999999999899999999998899999999999987653
No 149
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.40 E-value=2.1e-06 Score=51.95 Aligned_cols=48 Identities=29% Similarity=0.331 Sum_probs=43.7
Q ss_pred eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+.++.+++++.+++..|.+.+...+||+|++|+++|+++..|+++.+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL 51 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence 477899999999999999899999999998899999999999987654
No 150
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.38 E-value=2.4e-06 Score=51.36 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=44.2
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+++.++.++.++.++++.|.+++...+||+|+ |+++|+++..|+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~ 50 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR 50 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHh
Confidence 36788999999999999999888999999997 99999999999987663
No 151
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.38 E-value=2.4e-06 Score=51.37 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=42.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..+++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 5678999999999999999888999999996 9999999999998754
No 152
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.37 E-value=1.8e-06 Score=61.35 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385 47 ALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~ 118 (126)
-.+.+..+.......+.+ +|++ ++.++.+++++.++++.+.+++..++||++++ ++++|+|+..|++..+.
T Consensus 54 e~~~i~~vl~l~~~~V~d-iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 54 TRDMLEGVMDIADQRVRD-IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred HHHHHHHHhccCCCEEeE-EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 344555555555555544 7775 69999999999999999999999999999876 69999999999997553
No 153
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.36 E-value=1.7e-06 Score=64.73 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=48.9
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+|.+++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+++.+.
T Consensus 340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 67788999999999999999999999999999998899999999999998654
No 154
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=2.4e-06 Score=52.17 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=43.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.+++..|.+.+.+.+||+|+ |+++|+++..++.+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence 5678999999999999999999999999996 99999999999988654
No 155
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.35 E-value=2.4e-06 Score=63.40 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-CceEEEEeHHHHHHHHH
Q 039385 47 ALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-RLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-~~lvGivs~~dil~~~~ 118 (126)
-.+.++.........+++ +|++ ++.+++.++++.++++.+.+++..++||.+++ ++++|+|+..|++..+.
T Consensus 178 E~~~i~~vl~l~~~~v~d-iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 178 EQKILQGIVSFGNTDTKQ-VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred HHHHHHHHhccCCCEeee-eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 344555555555555554 7774 78999999999999999999999999999864 59999999999997543
No 156
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.35 E-value=3.4e-06 Score=50.80 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=42.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+..|++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~ 48 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV 48 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 5678999999999999999889999999996 9999999999998543
No 157
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.34 E-value=2.1e-06 Score=51.79 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=44.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
++.+++++.++.++++.|.+.+...+||+|++|+++|+++..++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK 52 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence 45678999999999999988888999999988999999999999987654
No 158
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.34 E-value=3.2e-06 Score=50.70 Aligned_cols=48 Identities=31% Similarity=0.583 Sum_probs=43.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+.+.+.+||+++ ++++|+++..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence 4578899999999999999888999999996 99999999999998764
No 159
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.34 E-value=3.8e-06 Score=50.57 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=43.1
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+++...+||+|+ ++++|+++..++++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence 4577899999999999999899999999997 89999999999998754
No 160
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.33 E-value=1.5e-06 Score=60.75 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=49.0
Q ss_pred cccccc-eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 65 TTQQRE-LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 65 ~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+.
T Consensus 159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 477777 899999999999999999999999999998899999999999988653
No 161
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.32 E-value=2.6e-06 Score=51.84 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 5567899999999999998776 889999998 99999999999987654
No 162
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=3.1e-06 Score=50.97 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=41.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV 46 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence 5678999999999999999999999999997 99999999999873
No 163
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.28 E-value=5.1e-06 Score=62.71 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.|.+++.++.+++++.++++.|.++++..+||+|++++++|+||..|+..
T Consensus 94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 67889999999999999999999999999999999999999999999853
No 164
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.26 E-value=4.4e-06 Score=49.63 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=41.7
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
++.++.+++++.++++.|.+++...+||+| +++++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567899999999999999989999999998 6999999999999864
No 165
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.26 E-value=7e-06 Score=49.39 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=42.5
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV 48 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 5577899999999999999889999999995 5999999999999865
No 166
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.24 E-value=3.7e-06 Score=50.34 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=42.0
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
++.++.+++++.+++..|.+.+...+||+|++|+++|+++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF 48 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence 5678999999999999999899999999998899999999999864
No 167
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.24 E-value=5.7e-06 Score=62.67 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=46.8
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
.|..++.++.+++++.++++.|.+++...+||+|++++++|+|+..|+..
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 66779999999999999999999999999999999999999999999864
No 168
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.24 E-value=7.5e-06 Score=61.46 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=46.5
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC---CceEEEEeHHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMIRV 116 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil~~ 116 (126)
.|.+++.++.++.++.++++.|.++++..+||+|++ ++++|+|+..|++..
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 566788999999999999999999999999999987 799999999999753
No 169
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.24 E-value=3.2e-06 Score=65.15 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=48.0
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
+|++++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.+
T Consensus 452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l 503 (574)
T PRK01862 452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL 503 (574)
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence 6677888999999999999999999999999999999999999999998854
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.21 E-value=8e-06 Score=48.75 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=40.8
Q ss_pred EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
+++.++.++.+++..|.+.+...+||+|+ ++++|+++..++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 67899999999999999999999999997 999999999999864
No 171
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.19 E-value=7.5e-06 Score=49.64 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=41.6
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR 115 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~ 115 (126)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 5578899999999999999888899999997 689999999999874
No 172
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.18 E-value=1.2e-05 Score=60.39 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHHh-----cCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 49 EFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKALT-----KHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~~-----~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+.++.+.+++..++++ +|++++.++++++++.++++.|.+ ++...+||+|++++++|+|+.+|++.
T Consensus 120 ~~i~~ll~~~e~tvg~-iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 120 KAINLLLSYSDDSAGR-IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL 190 (449)
T ss_pred HHHHHHhCCCcchHHH-hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence 3455566666655554 888899999999999999999975 45678999998999999999999875
No 173
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.17 E-value=4.6e-06 Score=50.13 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=37.0
Q ss_pred EeCCCCHHHHHHHHHhcC-----CCEEEEEcCCCceEEEEeHHHHHH
Q 039385 74 CQVDSPLSEVIGKALTKH-----VHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 74 v~~~~~l~~~~~~m~~~~-----~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+.+++++.++++.|.+++ ...+||+|++++++|+++..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence 578999999999998776 478999998899999999999875
No 174
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.17 E-value=1.5e-05 Score=48.20 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=47.5
Q ss_pred cccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 67 QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 67 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
|.+++.++.++.++.+|...|.++++..+||++ .++++|++|..|+++.+...
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~ 57 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAG 57 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhcc
Confidence 346789999999999999999999999999998 45899999999999998654
No 175
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1e-05 Score=60.57 Aligned_cols=73 Identities=25% Similarity=0.381 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHHHHHH-----hcCCCEEEEEcCCCceEEEEeHHHHHHHHHHhhh
Q 039385 49 EFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVIGKAL-----TKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~~~m~-----~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~~~ 122 (126)
...+...+++...+++ .|+.+++++.+++|+.+++..+. ...++.++|+|++++++|++|.++++..-....+
T Consensus 121 ~~v~~~l~y~e~taG~-~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i 198 (451)
T COG2239 121 ARVRQLLSYPEDTAGR-IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELL 198 (451)
T ss_pred HHHHHhcCCChhhhhc-cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHH
Confidence 3344455566666655 89999999999999999999996 3567899999999999999999999965444443
No 176
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.16 E-value=1.3e-05 Score=48.51 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=40.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcC-CCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~-~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHh
Confidence 4577899999999999998887 56777777 689999999999998654
No 177
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=1.9e-05 Score=47.46 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=41.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+.++.+++++.++++.|.+++...++|.+ +|+++|+++..|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMA 49 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHH
Confidence 457789999999999999888877777776 599999999999998764
No 178
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.12 E-value=1.7e-05 Score=60.29 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=44.8
Q ss_pred cccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385 67 QQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR 115 (126)
Q Consensus 67 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~ 115 (126)
|.+++.++.+++++.++++.|.++++..+||+|+ +++++|+||..|+..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 5678999999999999999999999999999996 479999999999854
No 179
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.11 E-value=1.5e-05 Score=47.44 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=41.4
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
+++.+++.+.++.+++..|.+.+...+||+|+ ++++|+++..|++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 36688999999999999998888889999996 99999999999875
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=2.2e-05 Score=46.86 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
+..++.++.++.+++..|.+.+...+||++++++++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 45778999999999999998888999999988999999999998753
No 181
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.10 E-value=2.1e-05 Score=59.75 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=44.4
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC---CceEEEEeHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ---RLLLGLVSLTDMI 114 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---~~lvGivs~~dil 114 (126)
.|..+++++.+++++.++++.|.++++..+||+|++ ++++|+|+..|+.
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 455688999999999999999999999999999963 7999999999985
No 182
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.10 E-value=1.6e-05 Score=47.72 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~~~ 118 (126)
....+.++.++.++.+.+.+.+...+||+|+ +|+++|+|+..|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~ 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence 3467899999999999999888889999997 689999999999987664
No 183
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.01 E-value=1.4e-05 Score=61.23 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=73.3
Q ss_pred ccCCCCceeeEeeCC-CceeEEEeeccccc-cCcHHH-HHhhhhhcHHHHHHHHhcCCC-CCC---CccccccceEEEeC
Q 039385 4 YKKPNVERNSISLGN-GWRLIGTFSASDLR-GCHYAV-LQTWLPLTALEFTQQVLTSPL-FSE---SNTTQQRELLTCQV 76 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~-~~~l~G~is~~dl~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~m~~~~~~v~~ 76 (126)
+++..++.+||+-++ .++++|++..+|+. .+...+ ..+....+-..+......... .+. ...+|...++++..
T Consensus 575 ~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d 654 (696)
T KOG0475|consen 575 MEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTD 654 (696)
T ss_pred HhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccc
Confidence 345667788877554 45899999999994 332111 000000000011100000000 011 12377788999999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.+|.+.+++++.+-+..++.|.. +|++.|+||..|+++..+
T Consensus 655 ~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 655 LTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHTR 695 (696)
T ss_pred cCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhhc
Confidence 99999999999999999998776 899999999999998754
No 184
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.01 E-value=1.3e-05 Score=60.81 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=50.4
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
.+..|+++|++.+|+.+|+.+|.+.++..+.+++.++...||||..|+...+..
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~ 207 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA 207 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHh
Confidence 677899999999999999999999999999999999999999999999988754
No 185
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.90 E-value=6.7e-05 Score=56.73 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=43.6
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI 114 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil 114 (126)
.|.++++++.+++++.++++.|.+++...+||+| +++++|+||..|+.
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~ 140 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL 140 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh
Confidence 5677889999999999999999999999999998 57999999999975
No 186
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.86 E-value=8.5e-06 Score=62.41 Aligned_cols=112 Identities=15% Similarity=0.056 Sum_probs=74.9
Q ss_pred cCCCCceeeEeeCCCc----eeEEEeeccccccCcH-H----H------HHhhhhhcHHHHHHHHhcCCCCCC-------
Q 039385 5 KKPNVERNSISLGNGW----RLIGTFSASDLRGCHY-A----V------LQTWLPLTALEFTQQVLTSPLFSE------- 62 (126)
Q Consensus 5 ~~~~~~~~pVvd~~~~----~l~G~is~~dl~~~~~-~----~------~~~~~~~~~~~~~~~~~~~~~~~~------- 62 (126)
+..+..++||+|+..+ ++.|+|=.+.+..+.. . + .......+..++..+..+.+....
T Consensus 609 k~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~ 688 (762)
T KOG0474|consen 609 KSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEM 688 (762)
T ss_pred HhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhh
Confidence 4567889999997642 6888887777732210 0 0 000012222333332111111111
Q ss_pred ---CccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 63 ---SNTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 63 ---~~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
-.-.|.+.+.++.+++++..+..++..-+.+++.|++..++.+|++|++|+...
T Consensus 689 yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 689 YVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 012677788999999999999999999999999999988999999999999854
No 187
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.71 E-value=8.8e-05 Score=56.47 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=41.2
Q ss_pred eEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHH
Q 039385 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIR 115 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~ 115 (126)
+.++.+++++.+|+..|.+++...+||+|+ +++++|+||..|+..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI 154 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence 368999999999999999999999999996 589999999999863
No 188
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.60 E-value=2.4e-05 Score=41.73 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.6
Q ss_pred cccCCCCceeeEeeCCCceeEEEeecccccc
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLRG 33 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~~ 33 (126)
.|.+++++.+||+|+++ +++|++|.+|+..
T Consensus 24 ~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~ 53 (57)
T PF00571_consen 24 IMRKNGISRLPVVDEDG-KLVGIISRSDLLK 53 (57)
T ss_dssp HHHHHTSSEEEEESTTS-BEEEEEEHHHHHH
T ss_pred HHHHcCCcEEEEEecCC-EEEEEEEHHHHHh
Confidence 46788999999999987 9999999999953
No 189
>PRK11573 hypothetical protein; Provisional
Probab=97.55 E-value=0.00043 Score=51.63 Aligned_cols=91 Identities=9% Similarity=0.143 Sum_probs=64.2
Q ss_pred EeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-
Q 039385 25 TFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ- 101 (126)
Q Consensus 25 ~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~- 101 (126)
.+|.++++.+...... .....-.+.++.+......++.+ +|+ .++.+++.+.++.++++.+.+++..++||.+++
T Consensus 153 ~~s~eEl~~lv~~~~~-~l~~~e~~mi~~vl~l~~~~v~e-iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 153 ALSKEELRTIVHESRS-QISRRNQDMLLSVLDLEKVTVDD-IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred CCCHHHHHHHHHHHhh-hcCHHHHHHHHHHhccCCCChhh-cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC
Confidence 3566666544222111 12223445555555555555554 554 478999999999999999999999999998753
Q ss_pred CceEEEEeHHHHHHHH
Q 039385 102 RLLLGLVSLTDMIRVL 117 (126)
Q Consensus 102 ~~lvGivs~~dil~~~ 117 (126)
..++|++...|++...
T Consensus 231 D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 231 DDAISMLRVREAYRLM 246 (413)
T ss_pred CceEEEEEHHHHHHHh
Confidence 6999999999999754
No 190
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00039 Score=49.98 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=42.8
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
.++.++.+++++.+.+....+. ...++|+|++++++|++++..++.++..
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQA-PCPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccCccchHHHHHHHHhcC-CCceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 4678899999999998877644 4568899999999999999999998864
No 191
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.29 E-value=0.00073 Score=49.90 Aligned_cols=48 Identities=10% Similarity=0.206 Sum_probs=41.3
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+..++.+++++.+++..+.+.. .-++|+|+ |+++|+|++.+++..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 5678999999999999887655 55889985 999999999999998864
No 192
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.21 E-value=0.0034 Score=47.04 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCCCCccccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEc-CCCceEEEEeHHHHHHHHHHh
Q 039385 48 LEFTQQVLTSPLFSESNTTQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVD-QQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~~~lvGivs~~dil~~~~~~ 120 (126)
...++.+......++.+ +|+ .++.++..+.++.++.+.+.+++..++||.+ +.+.++|++...|++......
T Consensus 194 ~~mi~~v~~l~~~~v~e-iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 194 REMINNVLDLDDRTVRE-IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred HHHHHHHhccCCcEeee-EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 34445555555555544 554 5789999999999999999999999999998 556999999999999987655
No 193
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.11 E-value=0.00052 Score=49.74 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=48.1
Q ss_pred ccc--cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 66 TQQ--RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 66 ~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
+|. ...-++.+++++.+-.++-.+.+..+.||+|...+++|+||..|++......
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t 249 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPST 249 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCc
Confidence 555 5677889999999999999999999999999999999999999998765443
No 194
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.044 Score=40.86 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=39.5
Q ss_pred EeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 74 CQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 74 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
..++.+..+++..|..++...++|+|+++++.|+++..++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL 333 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh
Confidence 44677899999999999999999999999999999999997654
No 195
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.09 E-value=0.0029 Score=31.31 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=24.7
Q ss_pred cccCCCCceeeEeeCCCceeEEEeeccccc
Q 039385 3 WYKKPNVERNSISLGNGWRLIGTFSASDLR 32 (126)
Q Consensus 3 ~~~~~~~~~~pVvd~~~~~l~G~is~~dl~ 32 (126)
.|.++++..+||+++++ +++|+++..++.
T Consensus 17 ~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~ 45 (49)
T smart00116 17 LLREHGIRRLPVVDEEG-RLVGIVTRRDII 45 (49)
T ss_pred HHHHhCCCcccEECCCC-eEEEEEEHHHHH
Confidence 35667889999999877 999999998884
No 196
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.94 E-value=0.019 Score=40.44 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
....+++..+...+...+||+|++|+++|.||+.+++..
T Consensus 270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 344557788888999999999999999999999999764
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.008 Score=41.56 Aligned_cols=53 Identities=15% Similarity=0.354 Sum_probs=46.6
Q ss_pred ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCC-ceEEEEeHHHHHHHHHHh
Q 039385 68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQR-LLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~-~lvGivs~~dil~~~~~~ 120 (126)
+...+++..+.++.+++..+.+....+.||+.++. .+.|++-..|+++.+...
T Consensus 76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC
Confidence 45678999999999999999999999999997544 899999999999987654
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.82 E-value=0.18 Score=37.23 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=41.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
......++.+..+++..|...+...++|+|+++++.|.++..++...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 298 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR 298 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh
Confidence 334567788999999999999999999999999999999999987654
No 199
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.12 Score=41.38 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=50.5
Q ss_pred cccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC--CCceEEEEeHHHHHHHHHHhhh
Q 039385 65 TTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ--QRLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 65 ~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~~~lvGivs~~dil~~~~~~~~ 122 (126)
.+|-+++.++..+++..|.-+.+..+..+.+|+||. +.-++|.|+++.+...+..++.
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 488899999999999999988887777999999985 3489999999999999877654
No 200
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.063 Score=39.56 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=46.8
Q ss_pred ccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC-CCceEEEEeHHHHHHHHHHhh
Q 039385 68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 68 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~~lvGivs~~dil~~~~~~~ 121 (126)
+.++..+..+++.+++++.+......++|+-.+ -...+||+..+|+++++.+.-
T Consensus 209 R~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 209 RNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred ccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 357889999999999999999999999999743 337999999999999987654
No 201
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.51 E-value=0.11 Score=38.82 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=40.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~ 116 (126)
+++...|+.++.++++....+++..+||.+. ..+++|+||-+|+-..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~ 166 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL 166 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence 5677899999999999999999999999963 2499999999997544
No 202
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.59 E-value=0.24 Score=38.98 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=51.5
Q ss_pred ccccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCC-----CceEEEEeHHHHHHHHHHhhh
Q 039385 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQ-----RLLLGLVSLTDMIRVLRTSIL 122 (126)
Q Consensus 64 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----~~lvGivs~~dil~~~~~~~~ 122 (126)
+++|+.|++++..-+.+..+.+.+..++.+..||+|+. +++.|.|=++.++..+....-
T Consensus 585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f 648 (762)
T KOG0474|consen 585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVF 648 (762)
T ss_pred hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhh
Confidence 45888899999999999999999999999999999852 478999999999988876554
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.07 E-value=0.71 Score=37.23 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+.++-+-+.++|.++=.++.--+.++.+|.+ -|+++|+|++.++-+++..
T Consensus 810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred CCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 3456778899999998888889999999998 7999999999999988865
No 204
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=88.71 E-value=1.7 Score=24.69 Aligned_cols=28 Identities=25% Similarity=0.486 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 92 VHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
...+-|+|++|..+|+++.++-++...+
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~ 39 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKE 39 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHH
Confidence 3566677778888888888877766544
No 205
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=80.69 E-value=2.2 Score=25.92 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=13.9
Q ss_pred CEEEEEcCCCceEEEEeH
Q 039385 93 HRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~ 110 (126)
-..||.|.+|+++|+|+.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 578999889999999974
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=80.28 E-value=4.7 Score=32.05 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=39.2
Q ss_pred eEEEeCC-CCHHHHHHHHHhcCCCEEEEE-c-CCCceEEEEeHHHHHHHHHH
Q 039385 71 LLTCQVD-SPLSEVIGKALTKHVHRVWVV-D-QQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 71 ~~~v~~~-~~l~~~~~~m~~~~~~~lpVv-d-~~~~lvGivs~~dil~~~~~ 119 (126)
..++..+ .++.+....|.+......||+ + ++++++|+|.++++...+..
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ 609 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILN 609 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhh
Confidence 3444444 789999999999888888887 3 35699999999999988764
No 207
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.89 E-value=2.2 Score=31.38 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=45.0
Q ss_pred cHHHHHHHHhcCCCCCCCcccccc--ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 46 TALEFTQQVLTSPLFSESNTTQQR--ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
-+.+|...+......++.+ +|+. +...-.+...-..++..+.+.....+.+++..++.+|+++..+..++
T Consensus 260 YV~~Fv~~v~~~~VltA~~-IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~ 331 (386)
T COG4175 260 YVRDFVRNVDRSRVLTAKD-IMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA 331 (386)
T ss_pred HHHHHHhcCChhheeeHHH-hhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc
Confidence 4556666555555555544 5552 12222223333567788888888888888877889999999988774
No 208
>PF14044 NETI: NETI protein
Probab=73.58 E-value=5.2 Score=21.39 Aligned_cols=21 Identities=5% Similarity=0.222 Sum_probs=18.5
Q ss_pred EEEeCCCCHHHHHHHHHhcCC
Q 039385 72 LTCQVDSPLSEVIGKALTKHV 92 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~ 92 (126)
+.|.++.|+.+++..|.+.+.
T Consensus 2 FeV~enETI~~CL~RM~~eGY 22 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY 22 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC
Confidence 457899999999999998876
No 209
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=73.23 E-value=8.3 Score=30.27 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=33.4
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH-HHHhhh
Q 039385 79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV-LRTSIL 122 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~-~~~~~~ 122 (126)
.+.++.+...+.+-.-++|+. ++++.|+|.+.|+++. +.+++.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi~ERf~ 457 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGIKERFA 457 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhHHHHHH
Confidence 456666777777778888887 8999999999999886 555443
No 210
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=72.66 E-value=5.7 Score=26.41 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=10.8
Q ss_pred CHHHHHHHHHhcCCCEEEE
Q 039385 79 PLSEVIGKALTKHVHRVWV 97 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpV 97 (126)
++.+|+....+.+...|-|
T Consensus 36 ~~~eAl~~A~~~~lDLV~v 54 (177)
T PRK00028 36 STREALELAEEAGLDLVEI 54 (177)
T ss_pred eHHHHHHHHHHcCCCEEEE
Confidence 4556666666666655544
No 211
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=71.81 E-value=3.8 Score=31.72 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCCCceeeEeeCCCceeEE-EeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHHH
Q 039385 6 KPNVERNSISLGNGWRLIG-TFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEVI 84 (126)
Q Consensus 6 ~~~~~~~pVvd~~~~~l~G-~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~~ 84 (126)
+++++.+||.+.+....+| .+....+.....+. .+...++..++ ..+...+.+++++.+.+
T Consensus 235 ~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~--~~~~~~v~~~~----------------~~~l~~vp~~~~~~~~l 296 (498)
T KOG2118|consen 235 KHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV--PLEPLPVSESA----------------LLRLPLVPENMPLLDLL 296 (498)
T ss_pred hcCcceeeeccCcccchhhHHHHhhhhhhhcccc--ccccccchhhh----------------ccccccCCCcccHHHHH
Confidence 6788999999877633333 33333332221111 11122333332 34667789999999999
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
+.+.+.+.|.+.|.. ...-+|+++..++ ....
T Consensus 297 ~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 297 NEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred HHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 999988877777776 6778899999987 5443
No 212
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=71.60 E-value=3.3 Score=24.50 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.8
Q ss_pred hcCCCEEEEEcCCCceEEE
Q 039385 89 TKHVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 89 ~~~~~~lpVvd~~~~lvGi 107 (126)
..+..--||+|.+|+++||
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3567778999999999997
No 213
>CHL00199 infC translation initiation factor 3; Provisional
Probab=67.19 E-value=8.9 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=10.0
Q ss_pred CHHHHHHHHHhcCCCEEEEE
Q 039385 79 PLSEVIGKALTKHVHRVWVV 98 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVv 98 (126)
|..+|+....+.+.+.|-|-
T Consensus 41 ~~~eAl~~A~~~~lDLVeVs 60 (182)
T CHL00199 41 TSEQAIQLAANQGLDLVLVS 60 (182)
T ss_pred eHHHHHHHHHHcCCCEEEEC
Confidence 34555555555555554443
No 214
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=64.76 E-value=9.8 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.2
Q ss_pred EEEEEcCCCceEEEEeHH
Q 039385 94 RVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 94 ~lpVvd~~~~lvGivs~~ 111 (126)
..||.+++|+++|++...
T Consensus 18 s~pi~~~~g~~~Gvv~~d 35 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGID 35 (81)
T ss_dssp EEEEEETTTEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 468889889999987543
No 215
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=62.99 E-value=19 Score=21.08 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=22.3
Q ss_pred CHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHH
Q 039385 79 PLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~ 111 (126)
+.... ..+.+.....+.|..++++++|.+...
T Consensus 31 ~~~~~-~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 31 SPEDL-EEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp SHHHH-HHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred CHHHH-HHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 43444 445545557888888899999998753
No 216
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=60.43 E-value=22 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCceEEEEeHHHHHHHHHH
Q 039385 91 HVHRVWVVDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 91 ~~~~lpVvd~~~~lvGivs~~dil~~~~~ 119 (126)
+...+-++|++|.-+|+++..+-++...+
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e 45 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEE 45 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHH
Confidence 45667788889999999999988876544
No 217
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=57.32 E-value=12 Score=23.95 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=14.9
Q ss_pred cCCCEEEEEcCCCceEEEE
Q 039385 90 KHVHRVWVVDQQRLLLGLV 108 (126)
Q Consensus 90 ~~~~~lpVvd~~~~lvGiv 108 (126)
.+=.-=|++|..|++||||
T Consensus 105 ~GDSGRpi~DNsGrVVaIV 123 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIV 123 (158)
T ss_dssp TTSTTEEEESTTSBEEEEE
T ss_pred CCCCCCccCcCCCCEEEEE
Confidence 3344568999999999997
No 218
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=55.63 E-value=8.4 Score=30.07 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=21.5
Q ss_pred CEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 93 HRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
..+||.|++|+.+|+||.--.+..+.+.
T Consensus 141 ~~~PI~d~~g~~IGvVsVG~~l~~i~~~ 168 (537)
T COG3290 141 AKVPIFDEDGKQIGVVSVGYLLSEIDDV 168 (537)
T ss_pred eecceECCCCCEEEEEEEeeEhhhHHHH
Confidence 5689999999999999876555554443
No 219
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=53.93 E-value=19 Score=21.10 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCEEEEEcCCCc----eEEEEeHHHHHHHH
Q 039385 82 EVIGKALTKHVHRVWVVDQQRL----LLGLVSLTDMIRVL 117 (126)
Q Consensus 82 ~~~~~m~~~~~~~lpVvd~~~~----lvGivs~~dil~~~ 117 (126)
+....+.-++...+.++|.+|+ +.|.++..++...|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 4556666677888888897775 56777887777653
No 220
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=53.88 E-value=10 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred cCCCceEEEEeHHHHHHHHHHhh
Q 039385 99 DQQRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 99 d~~~~lvGivs~~dil~~~~~~~ 121 (126)
.++|++.|-||..||...+....
T Consensus 23 g~~gklfGSVt~~dIa~~l~~~~ 45 (87)
T PF03948_consen 23 GENGKLFGSVTSKDIAKALKEQT 45 (87)
T ss_dssp SSCSSBSSEBSHHHHHHHHHHCC
T ss_pred cCCcceecCcCHHHHHHHHHHhh
Confidence 56899999999999999998763
No 221
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=53.58 E-value=46 Score=19.79 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=35.6
Q ss_pred ceEEEeCCCC---HHHHHHHHHhcCCCEEEEEcC-CCce----EEEEeHHHHHHHHHHhh
Q 039385 70 ELLTCQVDSP---LSEVIGKALTKHVHRVWVVDQ-QRLL----LGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 70 ~~~~v~~~~~---l~~~~~~m~~~~~~~lpVvd~-~~~l----vGivs~~dil~~~~~~~ 121 (126)
.++.+..+.+ ..+....+...+...+.++|. +|++ .|-++..+++..+.+..
T Consensus 52 ~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 52 NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 4444444432 344555566677888888998 6754 59999999998887654
No 222
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=52.25 E-value=41 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.5
Q ss_pred EcCCCceEEEEeHHHHHHHHHHh
Q 039385 98 VDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 98 vd~~~~lvGivs~~dil~~~~~~ 120 (126)
++++|++.|-||..||...+...
T Consensus 83 ~g~~gklfGsVt~~~I~~~l~~~ 105 (147)
T PRK00137 83 AGEDGKLFGSVTTKDIAEALKKQ 105 (147)
T ss_pred cCCCCeEEeeeCHHHHHHHHHHc
Confidence 46789999999999999988553
No 223
>PHA00673 acetyltransferase domain containing protein
Probab=50.65 E-value=47 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHH
Q 039385 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 78 ~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~ 111 (126)
.+-.++++.+.+..-..+.|...+|++||.+...
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~ 73 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLL 73 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEE
Confidence 5667778889888888898887689999976543
No 224
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=48.15 E-value=50 Score=21.24 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.9
Q ss_pred EcCCCceEEEEeHHHHHHHHHH
Q 039385 98 VDQQRLLLGLVSLTDMIRVLRT 119 (126)
Q Consensus 98 vd~~~~lvGivs~~dil~~~~~ 119 (126)
.+++|++.|-||..||...+..
T Consensus 83 ~ge~gklfGSVt~~~I~~~l~~ 104 (148)
T TIGR00158 83 VGDEGKLFGSITTKQIADALKA 104 (148)
T ss_pred eCCCCeEEEeECHHHHHHHHHH
Confidence 4678999999999999988854
No 225
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=46.88 E-value=58 Score=25.95 Aligned_cols=85 Identities=19% Similarity=-0.044 Sum_probs=0.0
Q ss_pred ccCCCCceeeEeeCCCceeEEEeeccccccCcHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 4 YKKPNVERNSISLGNGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 4 ~~~~~~~~~pVvd~~~~~l~G~is~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
+..-...+.||.|++| +++|+++..-...-.......+...-...+.+. +.......-...
T Consensus 140 ~~~~~c~aaPI~d~~G-~liGvl~l~~~~~~~~~~~l~lv~~~a~~Ie~~------------------l~~~~~~~~~~~ 200 (638)
T PRK11388 140 LHNWAFCATPVFDSKG-RLTGTIALACPVEQTSAADLPLTLSIAREVGNL------------------LLTDSLLAESNR 200 (638)
T ss_pred ccCceEEeeEEEcCCC-CEEEEEEEEecccccChhhHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q ss_pred HHH----HHhcCCCEEEEEcCCCceEEE
Q 039385 84 IGK----ALTKHVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 84 ~~~----m~~~~~~~lpVvd~~~~lvGi 107 (126)
... +.+.....+.++|.+|+++.+
T Consensus 201 ~~~~~~~il~~~~~gVl~vD~~G~I~~~ 228 (638)
T PRK11388 201 HLNQLNALLESMDDGVIAWDEQGNLQFL 228 (638)
T ss_pred HHHHHHHHHhccCCcEEEECCCCeEehh
No 226
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=45.43 E-value=20 Score=20.88 Aligned_cols=17 Identities=24% Similarity=0.065 Sum_probs=12.7
Q ss_pred CCEEEEEcCCCceEEEE
Q 039385 92 VHRVWVVDQQRLLLGLV 108 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGiv 108 (126)
+...|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 46789999999999986
No 227
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=45.17 E-value=48 Score=17.61 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.5
Q ss_pred eCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHH
Q 039385 75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDM 113 (126)
Q Consensus 75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~di 113 (126)
....++.+.++...++++..+.+.|. +.+-|.....+.
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~~~ 49 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDH-GNLFGAVEFYKA 49 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHHHH
Confidence 45678899999999999999999984 556665544433
No 228
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=44.35 E-value=18 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=17.1
Q ss_pred eEeeCCCceeEEEeeccccccC
Q 039385 13 SISLGNGWRLIGTFSASDLRGC 34 (126)
Q Consensus 13 pVvd~~~~~l~G~is~~dl~~~ 34 (126)
-|+|.++ .++|-+...|+..+
T Consensus 14 ~V~d~~G-~~vG~vveGd~k~L 34 (64)
T PF12396_consen 14 NVVDDDG-NVVGRVVEGDPKKL 34 (64)
T ss_pred eEECCCC-CEEEEEecCCHHHh
Confidence 3778777 99999999998654
No 229
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=44.13 E-value=33 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.0
Q ss_pred CEEEEEcCCCceEEEEeHHHH
Q 039385 93 HRVWVVDQQRLLLGLVSLTDM 113 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~~di 113 (126)
..|.|+|++++++|..++...
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~ 43 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNC 43 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhh
Confidence 689999999999999998765
No 230
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=42.99 E-value=27 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=19.7
Q ss_pred EcCCCceEEEEeHHHHHHHHHHh
Q 039385 98 VDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 98 vd~~~~lvGivs~~dil~~~~~~ 120 (126)
++++|++.|-||..||...+...
T Consensus 89 ~ge~gklfGSVt~~dIa~~l~~~ 111 (153)
T CHL00160 89 VGENNQIFGSVTEKEISQIIKNK 111 (153)
T ss_pred eCCCCeEEcccCHHHHHHHHHHh
Confidence 46789999999999999988544
No 231
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=41.97 E-value=23 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=16.9
Q ss_pred cCCCEEEEEcCCCceEEEEeH
Q 039385 90 KHVHRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 90 ~~~~~lpVvd~~~~lvGivs~ 110 (126)
.+..-=|++|.+|+++||.+.
T Consensus 197 ~GnSGGpl~n~~G~vIGI~~~ 217 (351)
T TIGR02038 197 AGNSGGALINTNGELVGINTA 217 (351)
T ss_pred CCCCcceEECCCCeEEEEEee
Confidence 444557999999999999863
No 232
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=41.61 E-value=23 Score=18.17 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=8.6
Q ss_pred EcCCCceEEE
Q 039385 98 VDQQRLLLGL 107 (126)
Q Consensus 98 vd~~~~lvGi 107 (126)
.|++|+++|+
T Consensus 35 ~d~~G~ivGI 44 (50)
T PF10049_consen 35 YDEDGRIVGI 44 (50)
T ss_pred ECCCCCEEEE
Confidence 5788999997
No 233
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=40.72 E-value=49 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 91 HVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 91 ~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
....+.|+|++++.+|+.++.....
T Consensus 8 ~~e~~~~~d~~~~~~g~~~~~~~~~ 32 (180)
T PRK15393 8 STEWVDIVNENNEVIAQASREQMRA 32 (180)
T ss_pred CceEEEEECCCCCEeeEEEHHHHhh
Confidence 3456889999999999998766543
No 234
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=40.29 E-value=50 Score=18.01 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.0
Q ss_pred hcCCCEEEEEcCCCceEEEEe
Q 039385 89 TKHVHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 89 ~~~~~~lpVvd~~~~lvGivs 109 (126)
..+--+|=|+|++|+++|.++
T Consensus 42 ~~G~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 42 QPGDWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred CCcCEEEEEEcCCCCEEEEEE
Confidence 467788999999999999876
No 235
>PRK10898 serine endoprotease; Provisional
Probab=39.47 E-value=27 Score=25.76 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.6
Q ss_pred hcCCCEEEEEcCCCceEEEEeH
Q 039385 89 TKHVHRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 89 ~~~~~~lpVvd~~~~lvGivs~ 110 (126)
+.+..-=|++|.+|+++||.+.
T Consensus 196 ~~GnSGGPl~n~~G~vvGI~~~ 217 (353)
T PRK10898 196 NHGNSGGALVNSLGELMGINTL 217 (353)
T ss_pred CCCCCcceEECCCCeEEEEEEE
Confidence 3455667999999999999873
No 236
>PF10879 DUF2674: Protein of unknown function (DUF2674); InterPro: IPR024246 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=38.73 E-value=54 Score=17.41 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEe
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs 109 (126)
.+++.++.-.--+-+++-.+.+...+-.+-.+++++|.+.
T Consensus 7 k~isfsehkadierikk~ieegwaivklvpn~~rfiglle 46 (67)
T PF10879_consen 7 KVISFSEHKADIERIKKSIEEGWAIVKLVPNKDRFIGLLE 46 (67)
T ss_pred ceeehhhhhhhHHHHHHHHhcCeEEEEEccCCcceehhhh
Confidence 4566666555455556667788888878877889998653
No 237
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=38.00 E-value=33 Score=18.71 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=14.0
Q ss_pred CEEEEEcCCCceEEEEeH
Q 039385 93 HRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~ 110 (126)
+.+.+++++++++|.+..
T Consensus 3 ~~~~~~~~~~~ivG~~~~ 20 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRL 20 (79)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred cEEEEEEECCEEEEEEEE
Confidence 456677778999999875
No 238
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=37.44 E-value=1.2e+02 Score=20.27 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~ 116 (126)
...+-+|+..+.+.+...++|.+++|--.|..+..++...
T Consensus 33 ~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~ 72 (181)
T COG0241 33 IPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKL 72 (181)
T ss_pred CccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHH
Confidence 4467889999999999999999999988898888877665
No 239
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=36.96 E-value=35 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=19.0
Q ss_pred CceeeEeeCCCceeEEEeecccccc
Q 039385 9 VERNSISLGNGWRLIGTFSASDLRG 33 (126)
Q Consensus 9 ~~~~pVvd~~~~~l~G~is~~dl~~ 33 (126)
++..||++.++|+++|.+-.+=+..
T Consensus 129 vRR~pIi~~~tGEVlG~Ly~gvVLN 153 (238)
T PF09308_consen 129 VRRTPIIDPKTGEVLGYLYIGVVLN 153 (238)
T ss_dssp EEEEEEE-TTTSBEEEEEEEEEE-T
T ss_pred EeecceeeCCCCeEEEEEEEEEEEc
Confidence 4678999999999999987766643
No 240
>COG1720 Uncharacterized conserved protein [Function unknown]
Probab=36.25 E-value=31 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred CccccCCCCceeeEeeC--CCceeEEEeecccc
Q 039385 1 MFWYKKPNVERNSISLG--NGWRLIGTFSASDL 31 (126)
Q Consensus 1 ~~~~~~~~~~~~pVvd~--~~~~l~G~is~~dl 31 (126)
+|||.+.+-..+-|... .++..+|++..+.-
T Consensus 59 l~~fh~a~~~~l~Vrppr~~~~~~~GVFATRSp 91 (156)
T COG1720 59 LFWFHKADRWVLTVRPPRLGGNPRVGVFATRSP 91 (156)
T ss_pred EEEEecCCCccceEeCCCCCCCcceeEEeccCC
Confidence 58999998877777764 34489999877654
No 241
>smart00594 UAS UAS domain.
Probab=36.16 E-value=52 Score=20.02 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=29.5
Q ss_pred ceEEEeCCCCH---HHHHHHHHhcCCCEEEEEcCCC---------ceEEEEeHHHHHHHH
Q 039385 70 ELLTCQVDSPL---SEVIGKALTKHVHRVWVVDQQR---------LLLGLVSLTDMIRVL 117 (126)
Q Consensus 70 ~~~~v~~~~~l---~~~~~~m~~~~~~~lpVvd~~~---------~lvGivs~~dil~~~ 117 (126)
.++....+.+- .++...+.-.+...+.+++.++ ++.|-++..+++..+
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 45544444333 3344445556777788888776 556777777777654
No 242
>PRK03972 ribosomal biogenesis protein; Validated
Probab=36.15 E-value=1.4e+02 Score=20.47 Aligned_cols=31 Identities=6% Similarity=0.225 Sum_probs=26.3
Q ss_pred EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCC
Q 039385 72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQR 102 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~ 102 (126)
..-+...++.++++.-.+++...+.|+.++.
T Consensus 30 ~i~RGk~~lkel~~~A~~~g~TdLIVV~E~r 60 (208)
T PRK03972 30 YLTRGKKTIQDLLMEAYDRGYERLLIINVWK 60 (208)
T ss_pred EEecCCccHHHHHHHHHHCCCCeEEEEecCC
Confidence 4457788999999999999999999998744
No 243
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=34.63 E-value=44 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=13.6
Q ss_pred CEEEEEcCCCceEEEEeHH
Q 039385 93 HRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~~ 111 (126)
=.+||.|+.|+++|+-.+.
T Consensus 79 iifPI~d~~G~vvgF~gR~ 97 (128)
T PF08275_consen 79 IIFPIRDERGRVVGFGGRR 97 (128)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEEEEcCCCCEEEEeccc
Confidence 4689999999999987653
No 244
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=34.59 E-value=44 Score=21.33 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=15.9
Q ss_pred CCEEEEEcCCCceEEEEeHH
Q 039385 92 VHRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGivs~~ 111 (126)
...+||.+ +|+++|++++.
T Consensus 106 ~~~~PI~~-~~~vIaVl~~~ 124 (145)
T PF12282_consen 106 QEVVPIRR-NGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEEEE
Confidence 47899999 56999999954
No 245
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=34.42 E-value=41 Score=22.13 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.7
Q ss_pred CEEEEEcCCCceEEEEeHH
Q 039385 93 HRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~~ 111 (126)
=.+||+. +|+++|++...
T Consensus 117 IVvPi~~-~g~~iGvlDiD 134 (163)
T COG1956 117 IVVPIFK-DGKLIGVLDID 134 (163)
T ss_pred EEEEEEE-CCEEEEEEecC
Confidence 3589998 89999999754
No 246
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=34.12 E-value=43 Score=20.94 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
..|.+.++|++-|...+=.++|-||...-+-
T Consensus 2 r~ml~aKiHratVT~A~L~Y~GSitID~dll 32 (126)
T COG0853 2 RTMLKAKIHRATVTEADLNYVGSITIDEDLL 32 (126)
T ss_pred hhhhhhheeeeEEeecccceEEeEEECHHHH
Confidence 4578899999999998889999999875443
No 247
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=33.36 E-value=55 Score=17.92 Aligned_cols=18 Identities=22% Similarity=0.208 Sum_probs=13.9
Q ss_pred CCEEEEEcCCCceEEEEe
Q 039385 92 VHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGivs 109 (126)
+...+|++.+|+.+|.|.
T Consensus 9 l~g~~V~~~~G~~iG~V~ 26 (79)
T PF05239_consen 9 LIGKEVIDRDGEKIGKVK 26 (79)
T ss_dssp HTTSEEEETTSCEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEE
Confidence 344688988899999884
No 248
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=32.79 E-value=69 Score=17.78 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=16.0
Q ss_pred eEEEeCCCCHHHHHHHHHh
Q 039385 71 LLTCQVDSPLSEVIGKALT 89 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~ 89 (126)
-+.|.++.|++.|+..|..
T Consensus 3 ~v~V~ene~~d~ALrrFKr 21 (67)
T COG0828 3 QVKVRENEPLDKALRRFKR 21 (67)
T ss_pred eeeecCCChHHHHHHHHHH
Confidence 3778999999999998853
No 249
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=32.58 E-value=1.2e+02 Score=18.61 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCceEEEEeHHH
Q 039385 81 SEVIGKALTKHVHRVWVVDQQRLLLGLVSLTD 112 (126)
Q Consensus 81 ~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~d 112 (126)
.+....+....-....|...+|+++|.++...
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~ 70 (162)
T PRK10140 39 HMWQERLADRPGIKQLVACIDGDVVGHLTIDV 70 (162)
T ss_pred HHHHHHhhcCCCcEEEEEEECCEEEEEEEEec
Confidence 44444444433334556656789999998763
No 250
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=49 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.0
Q ss_pred EcCCCceEEEEeHHHHHHHHHHh
Q 039385 98 VDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 98 vd~~~~lvGivs~~dil~~~~~~ 120 (126)
.+++|++.|-||-.||...+...
T Consensus 83 ag~~GklfGSVt~~dIa~~l~~~ 105 (148)
T COG0359 83 AGEDGKLFGSVTSKDIAEALKAA 105 (148)
T ss_pred cCCCCceeccccHHHHHHHHHHc
Confidence 36689999999999999998765
No 251
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=31.99 E-value=80 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred CCCceeeEeeCCCceeEEEeeccccccC
Q 039385 7 PNVERNSISLGNGWRLIGTFSASDLRGC 34 (126)
Q Consensus 7 ~~~~~~pVvd~~~~~l~G~is~~dl~~~ 34 (126)
.+=+-++|+. ++ ++.|+|-+.|+..-
T Consensus 425 ~GGTPL~V~~-~~-~~~GVI~LkDivK~ 450 (681)
T COG2216 425 LGGTPLVVVE-NG-RILGVIYLKDIVKP 450 (681)
T ss_pred cCCCceEEEE-CC-EEEEEEEehhhcch
Confidence 3445667775 45 89999999999643
No 252
>COG4379 Mu-like prophage tail protein gpP [General function prediction only]
Probab=31.64 E-value=1.5e+02 Score=22.11 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=43.7
Q ss_pred HhhhhhcHHHHHHHHhcCCCCCCCcc------ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCce
Q 039385 40 QTWLPLTALEFTQQVLTSPLFSESNT------TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLL 104 (126)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~l 104 (126)
.++.++++.++.+.+...-.+.+.+. -...+.+++.+..+..+++....++ ...+|=.+.+|.+
T Consensus 107 ~~~k~~Tv~qIAekl~~P~Gitv~~~V~~~~~~~~~~~~~iEpGETa~daL~~iAr~-~gll~~~e~DG~L 176 (386)
T COG4379 107 SNVKNMTVLQIAEKLAAPFGITVKWQVLDAEANPALPKFTIEPGETAWDALTHIARH-VGLLPWLEPDGTL 176 (386)
T ss_pred chhccchHHHHHHHHhccccceEEEEEeccccCCCCceeEcCCcchHHHHHHHHHhh-cceeEEecCCceE
Confidence 35667888888888766555444321 1134678999999999999988754 4455556666655
No 253
>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies serine peptidases belong to MEROPS peptidase family S7 (flavivirin family, clan PA(S)). The protein fold of the peptidase domain for members of this family resembles that of chymotrypsin, the type example for clan PA. Flaviviruses produce a polyprotein from the ssRNA genome. The N terminus of the NS3 protein (approx. 180 aa) is required for the processing of the polyprotein. NS3 also has conserved homology with NTP-binding proteins and DEAD family of RNA helicase [, , ].; GO: 0003723 RNA binding, 0003724 RNA helicase activity, 0005524 ATP binding; PDB: 2IJO_B 3E90_D 2GGV_B 2FP7_B 2WV9_A 3U1I_B 3U1J_B 2WZQ_A 2WHX_A 3L6P_A ....
Probab=31.62 E-value=45 Score=21.10 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=14.7
Q ss_pred cCCCEEEEEcCCCceEEEE
Q 039385 90 KHVHRVWVVDQQRLLLGLV 108 (126)
Q Consensus 90 ~~~~~lpVvd~~~~lvGiv 108 (126)
.+..-=||++.+++++|+-
T Consensus 96 ~GsSGSpi~n~~g~ivGlY 114 (132)
T PF00949_consen 96 KGSSGSPIFNQNGEIVGLY 114 (132)
T ss_dssp TTGTT-EEEETTSCEEEEE
T ss_pred CCCCCCceEcCCCcEEEEE
Confidence 5666778999999999974
No 254
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=30.77 E-value=1.5e+02 Score=19.04 Aligned_cols=28 Identities=18% Similarity=0.507 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCceEEEE--------eHHHHHHHHHH
Q 039385 92 VHRVWVVDQQRLLLGLV--------SLTDMIRVLRT 119 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGiv--------s~~dil~~~~~ 119 (126)
.....|+|.+|+++... ...++++.+..
T Consensus 120 ~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 120 LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45789999999988887 34557766644
No 255
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=30.55 E-value=50 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMI 114 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil 114 (126)
..|.+.++|+.-|.+.+=.|+|-||...-+
T Consensus 3 r~mLksKIHratVT~a~L~Y~GSItID~~L 32 (126)
T TIGR00223 3 RTMLQGKLHRATVTHANLNYEGSITIDEDL 32 (126)
T ss_pred hHhhhhhhcceEEeccccccceeEEECHHH
Confidence 468889999999999888999999986543
No 256
>PRK10598 lipoprotein; Provisional
Probab=29.98 E-value=1.8e+02 Score=19.64 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=39.1
Q ss_pred CCceeeEeeCCCceeEEEeeccccccC----cHHHHHhhhhhcHHHHHHHHhcCCCCCCCccccccceEEEeCCCCHHHH
Q 039385 8 NVERNSISLGNGWRLIGTFSASDLRGC----HYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVDSPLSEV 83 (126)
Q Consensus 8 ~~~~~pVvd~~~~~l~G~is~~dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~~~~l~~~ 83 (126)
.+++.|+.|.+. |-|-.+|++-. .++.+......-...+++.+... .-+.|+.+++++.+..++
T Consensus 97 ~~~a~P~Yd~e~----gAIYLk~l~l~~~~v~Pe~~~~~l~~l~p~l~~~L~~~--------l~~~PVY~L~d~~~~~ea 164 (186)
T PRK10598 97 TLKAQPVFDKEK----GAIYLKDMELVDYTVQPEKMQTVMQTLLPYLNQSLRSY--------FNQQPAYVLREDKSKAEA 164 (186)
T ss_pred EEEEeeeEecCC----CcEEEecceEEEeecCHHHHHHHHHHHHHHHHHHHHHH--------hccCCeEEECCCCCHHHH
Confidence 367899999876 45555665322 33333221221122222222111 224678888788888888
Q ss_pred HHHHHhcCC
Q 039385 84 IGKALTKHV 92 (126)
Q Consensus 84 ~~~m~~~~~ 92 (126)
+.+-...++
T Consensus 165 l~kk~~k~i 173 (186)
T PRK10598 165 LAKKLAKGL 173 (186)
T ss_pred HHHhccCCC
Confidence 765555554
No 257
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=29.89 E-value=71 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.6
Q ss_pred EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCc
Q 039385 72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRL 103 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~ 103 (126)
..+.|.+++.++++.+.+.++..+.|+..+..
T Consensus 10 ~~~APGT~Lr~~l~~i~~~k~GALIVi~~~~~ 41 (352)
T PRK13482 10 KLVAPGTPLREGLERILRARTGALIVLGDDEE 41 (352)
T ss_pred HHhCCCchHHHHHHHHHHhCcceEEEEecCcc
Confidence 34789999999999999999999999975443
No 258
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=28.43 E-value=47 Score=18.52 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=18.3
Q ss_pred eEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEE
Q 039385 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGi 107 (126)
++.+.+.-++.+..+ -+-..+.=+|++|+++|+
T Consensus 13 YI~~~~~~~~~dt~e----~~edi~Idide~GkV~Gi 45 (69)
T COG5428 13 YILLEEGKVVEDTIE----LGEDILIDIDENGKVIGI 45 (69)
T ss_pred EEEEecCcceeehhh----cCCcEEEEecCCCcEEEE
Confidence 444444333333332 333344447899999997
No 259
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=28.41 E-value=1e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhcCCCEEEEEc-CCCceEEEEeHHH
Q 039385 79 PLSEVIGKALTKHVHRVWVVD-QQRLLLGLVSLTD 112 (126)
Q Consensus 79 ~l~~~~~~m~~~~~~~lpVvd-~~~~lvGivs~~d 112 (126)
...+.+..+....-..+.++- .+|+++|+++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~ 70 (155)
T PF13420_consen 36 SFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRD 70 (155)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEE
T ss_pred HHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEe
Confidence 345555555322335555554 4899999998763
No 260
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=28.09 E-value=2.2e+02 Score=20.72 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=29.1
Q ss_pred EEEeCCCCH-HHHHHHHHhcCCCEEEEEcCCCceEEEEeHH
Q 039385 72 LTCQVDSPL-SEVIGKALTKHVHRVWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 72 ~~v~~~~~l-~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~ 111 (126)
+.+....++ .+|+..+.++++..+ .++.+|++.|.+...
T Consensus 37 ivi~g~~~ist~al~~l~~~gI~v~-f~~~~G~~~g~~~~~ 76 (322)
T TIGR03641 37 IYVFGEVSLNSKALSFLSKKGIPIH-FFNYYGYYSGSFYPR 76 (322)
T ss_pred EEEEcCCccCHHHHHHHHHCCCeEE-EECCCCcEEEEEecC
Confidence 455666666 678888998988766 556689999987653
No 261
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=27.69 E-value=50 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=15.5
Q ss_pred CCCEEEEEcCCCceEEEEe
Q 039385 91 HVHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 91 ~~~~lpVvd~~~~lvGivs 109 (126)
+..-=|++|.+|+++||.+
T Consensus 179 GnSGGpl~n~~G~viGI~~ 197 (428)
T TIGR02037 179 GNSGGPLVNLRGEVIGINT 197 (428)
T ss_pred CCCCCceECCCCeEEEEEe
Confidence 4456799999999999964
No 262
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=27.52 E-value=54 Score=23.89 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=30.2
Q ss_pred EEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCceEEE
Q 039385 72 LTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGi 107 (126)
..+.|.+++.+.++...+.+...+.|+..+.++.++
T Consensus 16 ~~vAPGT~LR~Gld~Ilra~tGaLIvlG~de~v~~i 51 (349)
T COG1623 16 KRVAPGTPLRDGLDNILRANTGALIVLGDDENVEKI 51 (349)
T ss_pred HHhCCCCchHHHHHHHHhccCCeEEEEecchhhHhh
Confidence 458899999999999999999999999766655444
No 263
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=27.44 E-value=1e+02 Score=16.98 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=16.4
Q ss_pred ceEEEeCCCCHHHHHHHHHhc
Q 039385 70 ELLTCQVDSPLSEVIGKALTK 90 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~ 90 (126)
-.+.+.+..++.|++....++
T Consensus 13 t~V~vrpg~ti~d~L~~~~~k 33 (71)
T PF02196_consen 13 TVVQVRPGMTIRDALSKACKK 33 (71)
T ss_dssp EEEEE-TTSBHHHHHHHHHHT
T ss_pred EEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999887554
No 264
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=27.03 E-value=63 Score=20.33 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.3
Q ss_pred HHHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385 85 GKALTKHVHRVWVVDQQRLLLGLVSLTDMI 114 (126)
Q Consensus 85 ~~m~~~~~~~lpVvd~~~~lvGivs~~dil 114 (126)
..|.+.++|+.-|.+.+=.|+|-+|...-+
T Consensus 3 r~mLksKiHratVT~a~L~Y~GSitID~~L 32 (126)
T PRK05449 3 RTMLKSKIHRATVTEADLNYEGSITIDEDL 32 (126)
T ss_pred hhhhhhcccceEEeccccccceeEEECHHH
Confidence 467889999999999888999999986544
No 265
>TIGR00104 YaeB_AF0241 probable methyltransferase, YaeB/AF_0241 family. This protein has been characterized by crystallography in complex with S-Adenosylmethionine, making it a probable S-adenosylmethionine-dependent methyltransferase. The substrate is unknown.
Probab=26.81 E-value=51 Score=21.11 Aligned_cols=31 Identities=13% Similarity=0.423 Sum_probs=18.9
Q ss_pred CccccCCCCc--eeeEeeC--CCceeEEEeecccc
Q 039385 1 MFWYKKPNVE--RNSISLG--NGWRLIGTFSASDL 31 (126)
Q Consensus 1 ~~~~~~~~~~--~~pVvd~--~~~~l~G~is~~dl 31 (126)
+|||.+..-. .+-|.-. .++..+|+++.+.=
T Consensus 56 l~~fh~~~~~~~~~~v~pp~~~~~~~~GVFatRSP 90 (142)
T TIGR00104 56 LYWFDQAQRGKWQLTVVPPRLGGNQRRGVFATRSP 90 (142)
T ss_pred EEEEECCCCccceEEeCCccCCCCCceEEecccCC
Confidence 5899986655 3333322 22368899877655
No 266
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=26.71 E-value=67 Score=17.98 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.3
Q ss_pred CCEEEEEcCCCceEEEEe
Q 039385 92 VHRVWVVDQQRLLLGLVS 109 (126)
Q Consensus 92 ~~~lpVvd~~~~lvGivs 109 (126)
+...|+.|++|++.|++-
T Consensus 83 ~~~~Pi~~~~g~~~g~~~ 100 (110)
T PF08448_consen 83 VSISPIFDEDGEVVGVLV 100 (110)
T ss_dssp EEEEEEECTTTCEEEEEE
T ss_pred EEEEEeEcCCCCEEEEEE
Confidence 456888899999888864
No 267
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=26.52 E-value=2.5e+02 Score=20.35 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=28.9
Q ss_pred EEEeCCCCH-HHHHHHHHhcCCCEEEEEcCCCceEEEEeH
Q 039385 72 LTCQVDSPL-SEVIGKALTKHVHRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 72 ~~v~~~~~l-~~~~~~m~~~~~~~lpVvd~~~~lvGivs~ 110 (126)
+.+....++ ..++..+.++++..+ .++.+|++.|.+..
T Consensus 38 I~i~g~~~lst~~l~~l~~~~I~v~-f~~~~g~~~g~~~p 76 (323)
T TIGR00287 38 IVLFGGVSISSAAIRELAKRGIDIV-FLGGDGNYLGRLSP 76 (323)
T ss_pred EEEECCCCcCHHHHHHHHHCCCeEE-EECCCCcEEEEEec
Confidence 556677777 667788888888665 56778999998665
No 268
>PRK10638 glutaredoxin 3; Provisional
Probab=26.50 E-value=1.2e+02 Score=16.73 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=17.8
Q ss_pred HhcCCCEEEEEcCCCceEEEEeHHHHHHHH
Q 039385 88 LTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117 (126)
Q Consensus 88 ~~~~~~~lpVvd~~~~lvGivs~~dil~~~ 117 (126)
...+...+|++--+|+.+|=- .++.+.-
T Consensus 46 ~~~g~~~vP~i~~~g~~igG~--~~~~~~~ 73 (83)
T PRK10638 46 KRSGRTTVPQIFIDAQHIGGC--DDLYALD 73 (83)
T ss_pred HHhCCCCcCEEEECCEEEeCH--HHHHHHH
Confidence 446778899985567777643 4454443
No 269
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=26.40 E-value=80 Score=20.24 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=23.3
Q ss_pred EEEeCCCCHHHHHHHHHhcCCCEEEEEc
Q 039385 72 LTCQVDSPLSEVIGKALTKHVHRVWVVD 99 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd 99 (126)
.+-.|+.+-..+.+.|.+++.+-+||=-
T Consensus 24 ~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 24 ASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred cCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 3556788899999999999999998853
No 270
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=26.13 E-value=84 Score=18.82 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHHHHhcCCCE---EEEEcCCCceEEEEeHH
Q 039385 84 IGKALTKHVHR---VWVVDQQRLLLGLVSLT 111 (126)
Q Consensus 84 ~~~m~~~~~~~---lpVvd~~~~lvGivs~~ 111 (126)
.......++.. +|+.. +++++|+++..
T Consensus 92 ~~~~~~~~~~s~l~vPl~~-~~~~~Gvl~l~ 121 (148)
T PF13185_consen 92 WELARHPGIRSILCVPLRS-GGEVIGVLSLY 121 (148)
T ss_dssp THHHCCTT-SEEEEEEEEE-TTEEEEEEEEE
T ss_pred hhhhccccCCEEEEEEEeE-CCEEEEEEEEe
Confidence 35555666666 88887 57999999754
No 271
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=25.95 E-value=1.1e+02 Score=16.30 Aligned_cols=18 Identities=0% Similarity=0.108 Sum_probs=15.1
Q ss_pred EEEeCCCCHHHHHHHHHh
Q 039385 72 LTCQVDSPLSEVIGKALT 89 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~ 89 (126)
+.|..+.|++.|+..|..
T Consensus 3 V~V~~~e~ie~alrrfkr 20 (58)
T TIGR00030 3 VKVKEGESIDSALRRFKR 20 (58)
T ss_pred eEeCCCCcHHHHHHHHHH
Confidence 568899999999998854
No 272
>PRK10898 serine endoprotease; Provisional
Probab=25.85 E-value=77 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.6
Q ss_pred CCCceeeEeeCCCceeEEEeec
Q 039385 7 PNVERNSISLGNGWRLIGTFSA 28 (126)
Q Consensus 7 ~~~~~~pVvd~~~~~l~G~is~ 28 (126)
.+-+.-|++|.+| +++|+.+.
T Consensus 197 ~GnSGGPl~n~~G-~vvGI~~~ 217 (353)
T PRK10898 197 HGNSGGALVNSLG-ELMGINTL 217 (353)
T ss_pred CCCCcceEECCCC-eEEEEEEE
Confidence 4558889999988 99999874
No 273
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=25.50 E-value=78 Score=23.30 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCCceeeEeeCCCceeEEEeec
Q 039385 7 PNVERNSISLGNGWRLIGTFSA 28 (126)
Q Consensus 7 ~~~~~~pVvd~~~~~l~G~is~ 28 (126)
.+-+.-|++|.+| +++|+.+.
T Consensus 197 ~GnSGGpl~n~~G-~vIGI~~~ 217 (351)
T TIGR02038 197 AGNSGGALINTNG-ELVGINTA 217 (351)
T ss_pred CCCCcceEECCCC-eEEEEEee
Confidence 4557789999998 99999874
No 274
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=25.44 E-value=54 Score=25.83 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.8
Q ss_pred ceeeEeeCCCceeEEEeeccccc
Q 039385 10 ERNSISLGNGWRLIGTFSASDLR 32 (126)
Q Consensus 10 ~~~pVvd~~~~~l~G~is~~dl~ 32 (126)
...||.|+++ +.+|+++.+=+.
T Consensus 141 ~~~PI~d~~g-~~IGvVsVG~~l 162 (537)
T COG3290 141 AKVPIFDEDG-KQIGVVSVGYLL 162 (537)
T ss_pred eecceECCCC-CEEEEEEEeeEh
Confidence 4689999998 999999987664
No 275
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=25.08 E-value=82 Score=18.03 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=11.2
Q ss_pred EEEEcCCCceEEEEeH
Q 039385 95 VWVVDQQRLLLGLVSL 110 (126)
Q Consensus 95 lpVvd~~~~lvGivs~ 110 (126)
-+|..++++.+|.||-
T Consensus 37 ~~v~~~~g~~vG~vTS 52 (95)
T PF08669_consen 37 EPVYDEDGKPVGRVTS 52 (95)
T ss_dssp CEEEETTTEEEEEEEE
T ss_pred CEEEECCCcEEeEEEE
Confidence 3455467899998873
No 276
>PRK13599 putative peroxiredoxin; Provisional
Probab=24.98 E-value=2.3e+02 Score=19.33 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=30.3
Q ss_pred EEeCCCCHHHHHHHHHh----cCCCEEEEEcCCCceEEEEe--------HHHHHHHHHH
Q 039385 73 TCQVDSPLSEVIGKALT----KHVHRVWVVDQQRLLLGLVS--------LTDMIRVLRT 119 (126)
Q Consensus 73 ~v~~~~~l~~~~~~m~~----~~~~~lpVvd~~~~lvGivs--------~~dil~~~~~ 119 (126)
...++..+...+..+.. .....++|+|.+|++.-+.. ..++++.+..
T Consensus 96 l~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 96 IADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred EECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 34556566555553321 24688999999998877753 5677776654
No 277
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=24.61 E-value=47 Score=20.39 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.4
Q ss_pred HHHhcCCCEEEEEcCCCceEEEEeHHHHH
Q 039385 86 KALTKHVHRVWVVDQQRLLLGLVSLTDMI 114 (126)
Q Consensus 86 ~m~~~~~~~lpVvd~~~~lvGivs~~dil 114 (126)
.|.+.++|++-|.+.+=.++|-+|...-+
T Consensus 3 ~~LksKiHratVT~a~L~YeGSitID~~L 31 (111)
T cd06919 3 TMLKSKIHRATVTEADLNYEGSITIDEDL 31 (111)
T ss_pred chhhhcccceEEeccccccceeEEECHHH
Confidence 47788999999999888999999986543
No 278
>PRK09774 fec operon regulator FecR; Reviewed
Probab=24.41 E-value=2.3e+02 Score=20.54 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=33.2
Q ss_pred ceEEEeCCCCHHHHHHHHHhcCCCEEEEEcC---CCceEEEEeHHHHHHH
Q 039385 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ---QRLLLGLVSLTDMIRV 116 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~~~lvGivs~~dil~~ 116 (126)
.-..+..++||.+++..+.+++...+ ++|+ +-++-|.+...|+-..
T Consensus 244 ~G~lvf~~~pL~~vv~~l~ry~~~~i-~~~~~l~~~rvsG~f~~~~~~~~ 292 (319)
T PRK09774 244 QGILSFSDKPLGEVIATLSRYRNGVL-RCDPAVAGLRLSGTFPLKNTDAI 292 (319)
T ss_pred CCEEEEcCCcHHHHHHHHHhhcCCcE-eeChhHcCCEEEEEEECCCHHHH
Confidence 34567899999999999998766544 4464 3478999987764443
No 279
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.30 E-value=81 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.6
Q ss_pred CEEEEEcCCCceEEEEeH
Q 039385 93 HRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~ 110 (126)
.+.+|+..+|.-+|.|..
T Consensus 4 ehmeVi~sdG~~vGtVDh 21 (67)
T PF09939_consen 4 EHMEVIGSDGVHVGTVDH 21 (67)
T ss_pred CCCEEEeCCCCEEEEEee
Confidence 357899999999998864
No 280
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=23.87 E-value=37 Score=22.30 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.7
Q ss_pred eEeeCCCceeEEEeeccccc
Q 039385 13 SISLGNGWRLIGTFSASDLR 32 (126)
Q Consensus 13 pVvd~~~~~l~G~is~~dl~ 32 (126)
.++|++| ++.|.+|.=|+.
T Consensus 2 ~iiD~kG-rlFgkiniiDl~ 20 (168)
T PF14221_consen 2 KIIDSKG-RLFGKINIIDLL 20 (168)
T ss_pred cccccCC-cEeeeEeHHHHH
Confidence 3689998 999999999984
No 281
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.87 E-value=1.4e+02 Score=18.48 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.-++.++++.|.+.++.++.|+- ---.-|. -..||-+.+.
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~P-l~l~~G~-e~~di~~~v~ 94 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQS-LHIIPGE-EYEKLKREVD 94 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEe-CeeECcH-HHHHHHHHHH
Confidence 46889999999999999998885 3333453 3566666554
No 282
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=23.75 E-value=1.4e+02 Score=16.70 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.7
Q ss_pred ceEEEeCCCCHHHHHHHHHh
Q 039385 70 ELLTCQVDSPLSEVIGKALT 89 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~ 89 (126)
-.+.+.++.++.|++.+.-+
T Consensus 12 t~V~vrpg~ti~d~L~~~c~ 31 (72)
T cd01760 12 TVVPVRPGMSVRDVLAKACK 31 (72)
T ss_pred EEEEECCCCCHHHHHHHHHH
Confidence 45789999999999987744
No 283
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=23.58 E-value=56 Score=25.08 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=26.2
Q ss_pred eCCCCHHHHHHHHHhcCCCEEEEEcCCCce
Q 039385 75 QVDSPLSEVIGKALTKHVHRVWVVDQQRLL 104 (126)
Q Consensus 75 ~~~~~l~~~~~~m~~~~~~~lpVvd~~~~l 104 (126)
+.+.++.+++-.|.+.-...+|.++..|.+
T Consensus 70 HGd~Siy~aiV~mAQ~f~~n~pLl~~~GnF 99 (445)
T smart00434 70 HGDSSLYDAIVRMAQDFSNNYPLLDGQGNF 99 (445)
T ss_pred CchHHHHHHHHHHhcccccccceEeCCCCC
Confidence 568999999999999888999999987754
No 284
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=23.39 E-value=1.9e+02 Score=19.72 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCEEEEEcC----CCceEEEEeHHHHHHHHHHhh
Q 039385 91 HVHRVWVVDQ----QRLLLGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 91 ~~~~lpVvd~----~~~lvGivs~~dil~~~~~~~ 121 (126)
.++.+||.++ +=.+-|.+|-.||++.+...-
T Consensus 126 ~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~ 160 (204)
T PF04459_consen 126 EVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKE 160 (204)
T ss_pred eEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCC
Confidence 3455555542 114899999999999987643
No 285
>smart00455 RBD Raf-like Ras-binding domain.
Probab=23.07 E-value=1.3e+02 Score=16.62 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.4
Q ss_pred ceEEEeCCCCHHHHHHHHHh
Q 039385 70 ELLTCQVDSPLSEVIGKALT 89 (126)
Q Consensus 70 ~~~~v~~~~~l~~~~~~m~~ 89 (126)
-.+.+.|+.++.|++....+
T Consensus 12 ~~V~vrpg~tl~e~L~~~~~ 31 (70)
T smart00455 12 TVVKVRPGKTVRDALAKALK 31 (70)
T ss_pred EEEEECCCCCHHHHHHHHHH
Confidence 34789999999999987744
No 286
>PF11275 DUF3077: Protein of unknown function (DUF3077); InterPro: IPR021427 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.44 E-value=1.1e+02 Score=17.52 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=16.5
Q ss_pred cceEEEeCCCCHHHHHHHH
Q 039385 69 RELLTCQVDSPLSEVIGKA 87 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m 87 (126)
.|.+.+.|+.|+.+|+...
T Consensus 15 ~pLF~v~pgip~~dAl~~a 33 (79)
T PF11275_consen 15 HPLFRVNPGIPCEDALEHA 33 (79)
T ss_pred CCeeeeCCCCCHHHHHHHH
Confidence 4889999999999998765
No 287
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.17 E-value=1.3e+02 Score=16.74 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCce
Q 039385 80 LSEVIGKALTKHVHRVWVVDQQRLL 104 (126)
Q Consensus 80 l~~~~~~m~~~~~~~lpVvd~~~~l 104 (126)
-.+..+.+.-..+..+.++|.+|++
T Consensus 71 ~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 NSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHHHCCCCcCCEEEEECCCCCC
Confidence 3445555555667777778777653
No 288
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.14 E-value=1.9e+02 Score=17.30 Aligned_cols=25 Identities=4% Similarity=-0.064 Sum_probs=16.7
Q ss_pred HHHHHhcCCCEEEEEcCCCceEEEE
Q 039385 84 IGKALTKHVHRVWVVDQQRLLLGLV 108 (126)
Q Consensus 84 ~~~m~~~~~~~lpVvd~~~~lvGiv 108 (126)
...+.-.++....|+|.+|+++...
T Consensus 98 ~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 98 WRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred HHHhCCCcCCeEEEECCCCcEEEEE
Confidence 3444446677888888888777553
No 289
>PRK13190 putative peroxiredoxin; Provisional
Probab=22.06 E-value=2.1e+02 Score=19.14 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=30.2
Q ss_pred EEEeCCCCHHHHHHHHHh---cCCCEEEEEcCCCceEEEE--------eHHHHHHHHHHh
Q 039385 72 LTCQVDSPLSEVIGKALT---KHVHRVWVVDQQRLLLGLV--------SLTDMIRVLRTS 120 (126)
Q Consensus 72 ~~v~~~~~l~~~~~~m~~---~~~~~lpVvd~~~~lvGiv--------s~~dil~~~~~~ 120 (126)
+.+.++..+.+.+..+.. .......|+|.+|++.-+. +..++++.+...
T Consensus 94 ll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 94 VIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred EEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 334555555555443321 1368889999999876544 777787777543
No 290
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=21.44 E-value=2.6e+02 Score=18.66 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~ 115 (126)
..+..++.+.+.+-=-..++|++.+|++.|.-...+.-.
T Consensus 20 ~v~F~~ia~vL~dvl~aNvyIis~kGkiLGy~~~~~~~~ 58 (177)
T PF06018_consen 20 PVDFNDIAEVLSDVLEANVYIISRKGKILGYSFIDDFEC 58 (177)
T ss_dssp S--HHHHHHHHHHHHTSEEEEEETTSBEEEEE-SS----
T ss_pred CCCHHHHHHHHHHhhcCcEEEEeCCccEEEEeccCCCCc
Confidence 345567777776666678999999999999877765543
No 291
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=21.40 E-value=1.4e+02 Score=16.21 Aligned_cols=19 Identities=0% Similarity=0.128 Sum_probs=15.7
Q ss_pred eEEEeCCCCHHHHHHHHHh
Q 039385 71 LLTCQVDSPLSEVIGKALT 89 (126)
Q Consensus 71 ~~~v~~~~~l~~~~~~m~~ 89 (126)
-+.|..+.|++.|+..|..
T Consensus 3 ~V~V~~~e~ie~Alrrfkr 21 (64)
T PRK00270 3 QVKVRENESIDKALRRFKR 21 (64)
T ss_pred eeEeCCCChHHHHHHHHHH
Confidence 3678999999999998854
No 292
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=21.33 E-value=2.8e+02 Score=18.95 Aligned_cols=33 Identities=0% Similarity=0.020 Sum_probs=24.1
Q ss_pred cceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCce
Q 039385 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLL 104 (126)
Q Consensus 69 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~l 104 (126)
.|-+++.. .+++++++.+.+. ..+++++++|+.
T Consensus 105 ~pGi~v~~-~~fe~ll~~~~~~--~~l~~L~e~G~d 137 (199)
T PF04013_consen 105 TPGIYVRK-GGFEDLLEELAEE--YPLYYLHEDGED 137 (199)
T ss_dssp ETTEEEE----HHHHHHHHHCT--SEEEEESTTSEE
T ss_pred CCCEEEec-CCHHHHHHHHhcC--CcEEEEcCCCCc
Confidence 45577776 6899999988866 889999999854
No 293
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=21.29 E-value=1.1e+02 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=12.4
Q ss_pred EEEEEcCCCceEEEEe
Q 039385 94 RVWVVDQQRLLLGLVS 109 (126)
Q Consensus 94 ~lpVvd~~~~lvGivs 109 (126)
..||+|.+++-+|.|.
T Consensus 28 ~~~V~~~~~k~IG~V~ 43 (98)
T COG3277 28 NAPVYDANLKRIGKVV 43 (98)
T ss_pred CCeeEecCCCEEEEEE
Confidence 4578888888888874
No 294
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=21.21 E-value=1.7e+02 Score=16.79 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCceEEEEeHHHHHHHHH
Q 039385 77 DSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLR 118 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGivs~~dil~~~~ 118 (126)
.-++.+++..+.+.+..++.|+- ---.-|.-+..||-..+.
T Consensus 43 ~p~~~~~l~~l~~~g~~~v~vvP-lfl~~G~h~~~dip~~~~ 83 (101)
T cd03416 43 EPSLAEALDELAAQGATRIVVVP-LFLLAGGHVKEDIPAALA 83 (101)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEe-eEeCCCccccccHHHHHH
Confidence 56789999999998888887763 223335545556655554
No 295
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=21.19 E-value=1.4e+02 Score=19.34 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=28.9
Q ss_pred EeCCCCHHHHHHHHH-hcCCCEEEEEcCCCceEEEEeHHHHHHHHHHh
Q 039385 74 CQVDSPLSEVIGKAL-TKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 74 v~~~~~l~~~~~~m~-~~~~~~lpVvd~~~~lvGivs~~dil~~~~~~ 120 (126)
=...+|++.+++... +..-..++|+. .+++|.+....++.+..-.
T Consensus 60 d~~~Tpl~~vfe~v~~eA~~~Gv~v~g--sElVGlvP~~Alldaa~yy 105 (145)
T PF02971_consen 60 DYEKTPLHRVFEEVKREAARYGVPVVG--SELVGLVPLDALLDAAEYY 105 (145)
T ss_dssp -TTTS-HHHHHHHHHHHHHCTT--EEE--EEEES-B-HHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHhCCCccc--eEEEccccHHHHHHHHHHH
Confidence 345789999988773 35556788886 5799999999998876443
No 296
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=21.08 E-value=1.7e+02 Score=22.31 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=21.3
Q ss_pred ccccceEEEeCCCCHHHHHHHHHhcCCCEEEEEcCCCc
Q 039385 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRL 103 (126)
Q Consensus 66 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~ 103 (126)
+|.-|+..|..-..+.+++..|.+. .+..||.-|+
T Consensus 258 im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr 292 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR 292 (407)
T ss_pred HhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC
Confidence 3445667777666777777777655 3445565443
No 297
>COG3798 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.95 E-value=81 Score=17.68 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.5
Q ss_pred CEEEEEcCCCceEEEEeH
Q 039385 93 HRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~ 110 (126)
.+++|++.+|+-+|.|.-
T Consensus 9 EhmeVv~aDG~hvGtVDh 26 (75)
T COG3798 9 EHMEVVGADGKHVGTVDH 26 (75)
T ss_pred hcceeecCCCcEeccEee
Confidence 567899999999988753
No 298
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=20.91 E-value=1.7e+02 Score=18.79 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=23.2
Q ss_pred HhcCCCEEEEEcCCCce----EEEEeHHHHHHHHHHhh
Q 039385 88 LTKHVHRVWVVDQQRLL----LGLVSLTDMIRVLRTSI 121 (126)
Q Consensus 88 ~~~~~~~lpVvd~~~~l----vGivs~~dil~~~~~~~ 121 (126)
.-.++....++|.+|++ .|.++..++...+.+.+
T Consensus 134 ~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 134 GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 33456667789988975 46677788777766544
No 299
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.82 E-value=98 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=23.4
Q ss_pred ccccCCCCceeeEeeC--CCceeEEEeeccccccC
Q 039385 2 FWYKKPNVERNSISLG--NGWRLIGTFSASDLRGC 34 (126)
Q Consensus 2 ~~~~~~~~~~~pVvd~--~~~~l~G~is~~dl~~~ 34 (126)
.||....-..+||+.. ++++++|..+....+..
T Consensus 42 ~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r 76 (169)
T COG1247 42 AWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRER 76 (169)
T ss_pred HHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCc
Confidence 3677777766777633 32399999999998644
No 300
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=20.78 E-value=1e+02 Score=22.14 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCceEEE
Q 039385 81 SEVIGKALTKHVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 81 ~~~~~~m~~~~~~~lpVvd~~~~lvGi 107 (126)
..+..+..+..+..+|+++.+|...|-
T Consensus 84 ~~a~~Lr~~~~f~IvPmlNPDGvv~Gn 110 (278)
T cd06906 84 PTAQSLRESYIFKIVPMLNPDGVINGN 110 (278)
T ss_pred HHHHHHHHhCcEEEEeeecCccceecc
Confidence 345555677788999999999988775
No 301
>PRK12686 carbamate kinase; Reviewed
Probab=20.71 E-value=1.8e+02 Score=21.31 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCC-------CEEEEEcCCCceEE---EEeHHHHHHHHHHhhhh
Q 039385 81 SEVIGKALTKHV-------HRVWVVDQQRLLLG---LVSLTDMIRVLRTSILA 123 (126)
Q Consensus 81 ~~~~~~m~~~~~-------~~lpVvd~~~~lvG---ivs~~dil~~~~~~~~~ 123 (126)
.++++.+.+.++ .-+||+++++.+.| +++...+...++..+..
T Consensus 173 ~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~A 225 (312)
T PRK12686 173 HDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDA 225 (312)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCC
Confidence 456666766765 22467776776776 46777666666665543
No 302
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=20.61 E-value=2.2e+02 Score=17.39 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=14.9
Q ss_pred CEEEEEcCCCceEEEEeHHH
Q 039385 93 HRVWVVDQQRLLLGLVSLTD 112 (126)
Q Consensus 93 ~~lpVvd~~~~lvGivs~~d 112 (126)
....++..+|+++|.++...
T Consensus 51 ~~~~~~~~~g~~vG~~~~~~ 70 (156)
T TIGR03585 51 RRYWIVCQESRPIGVISFTD 70 (156)
T ss_pred ceEEEEEECCEEEEEEEEEe
Confidence 35666666899999988753
No 303
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=20.58 E-value=19 Score=20.18 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=20.6
Q ss_pred CCCCceeeEeeCCCceeEEEeecccc
Q 039385 6 KPNVERNSISLGNGWRLIGTFSASDL 31 (126)
Q Consensus 6 ~~~~~~~pVvd~~~~~l~G~is~~dl 31 (126)
+..+|++-|-|++-+++.|.++.+++
T Consensus 41 ~ge~SAYSVFN~~~~~i~Gtl~aE~~ 66 (71)
T PF10260_consen 41 PGELSAYSVFNKGCERIPGTLTAEQF 66 (71)
T ss_pred CCCccchhhhCCCccccCCCCCHHHH
Confidence 35678888888877788898888776
No 304
>PRK13191 putative peroxiredoxin; Provisional
Probab=20.36 E-value=2.5e+02 Score=19.10 Aligned_cols=46 Identities=15% Similarity=0.372 Sum_probs=28.8
Q ss_pred EeCCCCHHHHHHHHHhc----CCCEEEEEcCCCceEEEE--------eHHHHHHHHHH
Q 039385 74 CQVDSPLSEVIGKALTK----HVHRVWVVDQQRLLLGLV--------SLTDMIRVLRT 119 (126)
Q Consensus 74 v~~~~~l~~~~~~m~~~----~~~~lpVvd~~~~lvGiv--------s~~dil~~~~~ 119 (126)
..++..+...+..+... ..+...|+|.+|++..+. +..++++.+..
T Consensus 102 sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 102 ADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred ECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 44454555554443321 356788999999888775 46677777644
No 305
>PF01980 UPF0066: Uncharacterised protein family UPF0066; InterPro: IPR001378 This family contains a number of proteins of archaea and bacterial origin. The function of this family is unknown.; PDB: 1XQB_A 3OKX_A 2NV4_B.
Probab=20.22 E-value=51 Score=20.47 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=15.2
Q ss_pred CccccCC--CCceeeEeeCCC-ceeEEEeecccc
Q 039385 1 MFWYKKP--NVERNSISLGNG-WRLIGTFSASDL 31 (126)
Q Consensus 1 ~~~~~~~--~~~~~pVvd~~~-~~l~G~is~~dl 31 (126)
+|||.+. +...+.+.-..+ ...+|+++.+.=
T Consensus 41 l~~fh~~~~~~~~l~~~Pr~~~~~~~GVFatRSP 74 (120)
T PF01980_consen 41 LYWFHKADTDRNLLVRPPRGDGNPKVGVFATRSP 74 (120)
T ss_dssp EEE-TTS---SSEEEE-TTTSSSS-EEGGGS--S
T ss_pred EEEEecccccccccccCCCCCCCceeeEEcccCC
Confidence 5899988 455555543331 268888766543
No 306
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.13 E-value=1.9e+02 Score=16.51 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhcCC-------------CEEEEEcCCCceEEEEeH
Q 039385 79 PLSEVIGKALTKHV-------------HRVWVVDQQRLLLGLVSL 110 (126)
Q Consensus 79 ~l~~~~~~m~~~~~-------------~~lpVvd~~~~lvGivs~ 110 (126)
.+.++.+.+.+.+. ..+.+.|.+|..+.+.+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 67 DVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 46777777755554 356678888888888764
No 307
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=20.12 E-value=1.1e+02 Score=20.68 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.3
Q ss_pred CCCEEEEEcCCCceEEE
Q 039385 91 HVHRVWVVDQQRLLLGL 107 (126)
Q Consensus 91 ~~~~lpVvd~~~~lvGi 107 (126)
.-+.+.|++++|+++|+
T Consensus 161 ~~d~viVv~~ng~~vGV 177 (202)
T COG5270 161 RGDEVIVVSENGRVVGV 177 (202)
T ss_pred cCCeEEEEecCCEEEEE
Confidence 45778899999999887
No 308
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=20.12 E-value=1.8e+02 Score=16.40 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhcCCCEEEEE--cCCCceEEEEeHHHHHHHHHHh
Q 039385 77 DSPLSEVIGKALTKHVHRVWVV--DQQRLLLGLVSLTDMIRVLRTS 120 (126)
Q Consensus 77 ~~~l~~~~~~m~~~~~~~lpVv--d~~~~lvGivs~~dil~~~~~~ 120 (126)
..+...+.++.....+ .+||+ |+..|=--+|...||-.++.+.
T Consensus 27 ~lt~~~a~rk~~~g~l-plPv~rl~~SqKs~~~V~v~dLA~yiD~~ 71 (76)
T PF11112_consen 27 HLTPKTAKRKANAGEL-PLPVFRLDDSQKSPKFVHVQDLAAYIDKR 71 (76)
T ss_pred cCCHHHHHHHHHCCCC-CCceeecCCcccCCceeeHHHHHHHHHHH
Confidence 4566777777776666 67886 4455777788999998887654
Done!