Query 039386
Match_columns 582
No_of_seqs 164 out of 393
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 1.1E-27 3.9E-32 215.3 13.1 116 321-450 4-124 (130)
2 4i1k_A B3 domain-containing tr 99.6 5.9E-15 2E-19 135.6 11.4 114 310-444 26-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.3 2.4E-12 8.1E-17 110.9 9.2 92 327-440 7-98 (104)
4 2vut_I AREA, nitrogen regulato 95.3 0.0069 2.3E-07 45.9 1.9 33 4-43 2-34 (43)
5 1gnf_A Transcription factor GA 95.1 0.0097 3.3E-07 45.7 2.3 34 3-43 4-37 (46)
6 4gat_A Nitrogen regulatory pro 94.5 0.01 3.5E-07 48.7 1.1 34 3-43 9-42 (66)
7 3dfx_A Trans-acting T-cell-spe 94.3 0.015 5.2E-07 47.3 1.8 36 3-45 7-42 (63)
8 2kae_A GATA-type transcription 93.6 0.024 8.4E-07 47.0 1.7 35 3-43 8-42 (71)
9 1na6_A Ecorii, restriction end 91.6 0.21 7.1E-06 53.1 5.9 86 327-412 17-117 (404)
10 3lqh_A Histone-lysine N-methyl 89.7 0.08 2.7E-06 50.5 0.7 56 34-96 5-65 (183)
11 4hc9_A Trans-acting T-cell-spe 88.8 0.18 6E-06 45.0 2.2 78 3-94 5-89 (115)
12 4hc9_A Trans-acting T-cell-spe 75.9 0.98 3.3E-05 40.2 1.6 32 4-42 60-91 (115)
13 1we9_A PHD finger family prote 70.7 2.4 8.3E-05 33.0 2.6 40 55-95 20-59 (64)
14 2k16_A Transcription initiatio 50.5 4.9 0.00017 32.2 1.0 54 28-94 15-68 (75)
15 1wep_A PHF8; structural genomi 48.9 8.9 0.0003 31.3 2.3 43 54-97 24-66 (79)
16 1wem_A Death associated transc 47.8 6.3 0.00022 31.8 1.3 40 56-95 29-71 (76)
17 2ri7_A Nucleosome-remodeling f 46.6 3.7 0.00013 37.5 -0.3 41 56-97 22-62 (174)
18 2lo3_A SAGA-associated factor 43.4 7.9 0.00027 29.6 1.1 15 53-67 13-27 (44)
19 3o70_A PHD finger protein 13; 39.2 15 0.0005 29.6 2.1 47 44-94 19-67 (68)
20 2xb1_A Pygopus homolog 2, B-ce 38.1 11 0.00038 32.6 1.3 55 32-96 4-63 (105)
21 1wee_A PHD finger family prote 36.5 13 0.00046 29.7 1.5 37 57-95 31-67 (72)
22 3mhs_E SAGA-associated factor 33.8 10 0.00036 33.2 0.5 14 55-68 73-86 (96)
23 3o27_A Putative uncharacterize 32.0 56 0.0019 27.1 4.5 42 390-443 22-63 (68)
24 2vpb_A Hpygo1, pygopus homolog 28.2 18 0.00063 28.9 1.0 42 30-81 7-50 (65)
25 4bbq_A Lysine-specific demethy 26.0 26 0.00089 29.9 1.7 40 55-94 73-114 (117)
26 1r79_A Diacylglycerol kinase, 23.8 26 0.00088 29.6 1.2 49 15-75 26-74 (84)
27 2k75_A Uncharacterized protein 22.3 67 0.0023 27.4 3.5 29 366-415 40-68 (106)
28 1nui_A DNA primase/helicase; z 21.4 20 0.0007 34.3 0.1 27 32-65 15-41 (255)
29 2yt5_A Metal-response element- 20.9 20 0.00069 27.8 -0.0 39 57-95 23-62 (66)
30 2iyb_E Testin, TESS, TES; LIM 20.3 25 0.00084 26.8 0.3 55 30-94 1-63 (65)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.1e-27 Score=215.34 Aligned_cols=116 Identities=38% Similarity=0.685 Sum_probs=100.9
Q ss_pred cCCCCcccccEEEeccccCCCCCCceEeehhhhhhcCCCCCC---CCCceEEEEECCCCeEEEEEEEcCCCCCcceEec-
Q 039386 321 GDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQ---SEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLE- 396 (582)
Q Consensus 321 ~~~~~~~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~---~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLt- 396 (582)
+....+..++|+|+||+|||++++||+||+++|+.|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~ 81 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK 81 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence 445667788999999999999889999999999999999985 46799999999999999999999 556788886
Q ss_pred CchhhhhccCCccccccccccccccCceEEEEeeC-CCCeEEEeEEeCCCCCCCc
Q 039386 397 GVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRID-PGGKLVMGFRKAPIPGDMQ 450 (582)
Q Consensus 397 GWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~-~~GkL~IG~RRa~~~~~~~ 450 (582)
||..||++|+|++||+ |+|++.+ ++++|+|++||+..+...|
T Consensus 82 GW~~FV~~~~L~~GD~------------~~F~~~~~~~~~l~I~~rr~~~~~~~~ 124 (130)
T 1wid_A 82 GWSRFVKEKNLRAGDV------------VSFSRSNGQDQQLYIGWKSRSGSDLDA 124 (130)
T ss_dssp SHHHHHHHTTCCTTCE------------EEEEECCSSSCCEEEEEECCCSCSSCC
T ss_pred ChHHHHHHcCCCCCCE------------EEEEEecCCCcEEEEEEEECCCCCccc
Confidence 9999999999999999 9999986 4579999999998766443
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.58 E-value=5.9e-15 Score=135.60 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=89.6
Q ss_pred CCChHHHHhh---hcCCCCcccccEEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcC
Q 039386 310 RITDQELQQL---SGDLNSTIVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWP 386 (582)
Q Consensus 310 ~~td~e~qq~---s~~~~~~~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~ 386 (582)
.+|++|.+.. +.... ...+.|.|+|++|||.+..+|+||++.|+.|||..+ ..|.++|. |+.|.|++.|+.
T Consensus 26 ~~t~~~k~~a~~~A~~~~-s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~----~~i~L~~~-gk~W~v~~~~~~ 99 (146)
T 4i1k_A 26 TVTAEERERAINAAKTFE-PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS----GFIKVQLA-EKQWPVRCLYKA 99 (146)
T ss_dssp CCCHHHHHHHHHHHHHCC-CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC----SEEEEEET-TEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC----eEEEEEEC-CcEEEEEEEEeC
Confidence 4777655432 22222 346799999999999876689999999999999764 67888998 699999999983
Q ss_pred CCCCcceEecCchhhhhccCCccccccccccccccCceEEEEeeCCCC-eEEEeEEeCC
Q 039386 387 NNNSRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGG-KLVMGFRKAP 444 (582)
Q Consensus 387 Nn~SR~YvLtGWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~~~G-kL~IG~RRa~ 444 (582)
+++++..||..||++++|++||+ ++|...+... .|.|.+-|+.
T Consensus 100 ---~~~~ls~GW~~Fv~dn~L~~GD~------------cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 100 ---GRAKFSQGWYEFTLENNLGEGDV------------CVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp ---TEEEECTTHHHHHHHTTCCTTCE------------EEEEECSSSSCEEEEEEECCC
T ss_pred ---CcEEECCchHHHHHHcCCCCCCE------------EEEEEecCCceEEEEEEEecc
Confidence 35555569999999999999999 9999886432 5777777653
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.35 E-value=2.4e-12 Score=110.85 Aligned_cols=92 Identities=13% Similarity=0.227 Sum_probs=74.6
Q ss_pred ccccEEEeccccCCCCCCceEeehhhhhhcCCCCCCCCCceEEEEECCCCeEEEEEEEcCCCCCcceEecCchhhhhccC
Q 039386 327 IVPLFEKILSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQ 406 (582)
Q Consensus 327 ~~~LF~KvLT~SDVg~~gRLVIPK~~AEa~FP~Ld~~eGv~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLtGWs~FVrsK~ 406 (582)
..+.|.|+|+++|. ..+|.||++.++.+.+.+ +..+.++|..|+.|.+++.++. .+.++..||..||++++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHT
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcC
Confidence 45689999999994 479999999998876544 3689999999999999999872 34444459999999999
Q ss_pred CccccccccccccccCceEEEEeeCCCCeEEEeE
Q 039386 407 LRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGF 440 (582)
Q Consensus 407 LqAGD~i~iy~~~~~~~kVvFsR~~~~GkL~IG~ 440 (582)
|++||. ++|.... +..+.|-+
T Consensus 78 L~~GD~------------lvF~~~~-~~~f~V~I 98 (104)
T 1yel_A 78 LEDGKY------------LQFIYDR-DRTFYVII 98 (104)
T ss_dssp CCTTCE------------EEEEECS-SSEEEEEE
T ss_pred CCCCCE------------EEEEEcC-CCeEEEEE
Confidence 999999 9998764 56666654
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=95.25 E-value=0.0069 Score=45.86 Aligned_cols=33 Identities=33% Similarity=0.696 Sum_probs=27.2
Q ss_pred ccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386 4 RICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN 43 (582)
Q Consensus 4 k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~ 43 (582)
+.|.| |+++.+..||+|. .|. .||+.||.-|..
T Consensus 2 ~~C~~--C~tt~Tp~WR~gp---~G~--~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTN--CFTQTTPLWRRNP---EGQ--PLCNACGLFLKL 34 (43)
T ss_dssp CCCSS--SCCCCCSCCEECT---TSC--EECHHHHHHHHH
T ss_pred CcCCc--cCCCCCCccccCC---CCC--cccHHHHHHHHH
Confidence 46665 9999999999995 576 899999997753
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=95.08 E-value=0.0097 Score=45.67 Aligned_cols=34 Identities=32% Similarity=0.735 Sum_probs=27.9
Q ss_pred CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386 3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN 43 (582)
Q Consensus 3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~ 43 (582)
.+.|.| |+++.+..||+|. .|. .||+.||.-|..
T Consensus 4 ~~~C~~--C~tt~Tp~WR~gp---~G~--~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVN--CGATATPLWRRDR---TGH--YLCNACGLYHKM 37 (46)
T ss_dssp SCCCTT--TCCCCCSSCBCCT---TCC--CBCSHHHHHHHH
T ss_pred CCCCCC--cCCCCCCcCccCC---CCC--ccchHHHHHHHH
Confidence 467765 9999999999997 565 899999996643
No 6
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=94.51 E-value=0.01 Score=48.65 Aligned_cols=34 Identities=35% Similarity=0.750 Sum_probs=28.6
Q ss_pred CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386 3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN 43 (582)
Q Consensus 3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~ 43 (582)
.+.|.| |+++.|..||+|. .|. .||..||.-|..
T Consensus 9 ~~~C~~--C~t~~Tp~WR~gp---~G~--~LCNaCGl~~~~ 42 (66)
T 4gat_A 9 PTTCTN--CFTQTTPLWRRNP---EGQ--PLCNACGLFLKL 42 (66)
T ss_dssp SCCCTT--TCCCCCSSCEEET---TTE--EECHHHHHHHHH
T ss_pred CCCCCC--CCCCCCCcCCcCC---CCC--CccHHHHHHHHH
Confidence 467765 9999999999997 576 899999998864
No 7
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=94.34 E-value=0.015 Score=47.30 Aligned_cols=36 Identities=31% Similarity=0.702 Sum_probs=29.3
Q ss_pred CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccccc
Q 039386 3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFI 45 (582)
Q Consensus 3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~ 45 (582)
.+.|.| |+++.|..||+|. .|. .||+.||.-|....
T Consensus 7 ~~~C~~--C~tt~Tp~WR~gp---~G~--~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 7 GTSCAN--CQTTTTTLWRRNA---NGD--PVCNACGLYYKLHN 42 (63)
T ss_dssp TCCCTT--TCCSCCSSCCCCT---TSC--CCCHHHHHHHHHHS
T ss_pred CCcCCC--cCCCCCCccCCCC---CCC--chhhHHHHHHHHcC
Confidence 356765 9999999999997 466 89999999887543
No 8
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=93.59 E-value=0.024 Score=47.05 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=27.6
Q ss_pred CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccc
Q 039386 3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYEN 43 (582)
Q Consensus 3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~ 43 (582)
.+.|.| |+++.|..||+|+.-. | .||..||.-|..
T Consensus 8 ~~~C~n--C~tt~Tp~WRrg~~~~-g---~LCNACGl~~~~ 42 (71)
T 2kae_A 8 SFQCSN--CSVTETIRWRNIRSKE-G---IQCNACFIYQRK 42 (71)
T ss_dssp CCCCSS--SCCSCCSSCCCCSSSS-C---CCSSHHHHHHHH
T ss_pred CCcCCc--cCCCCCCccccCCCCC-C---ccchHHHHHHHH
Confidence 367876 9999999999986322 2 899999998754
No 9
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=91.61 E-value=0.21 Score=53.10 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=60.8
Q ss_pred ccccEEEeccccCCCC----CCceEeehhhhhhcCCCCCCC---CC-ce--EEEEECCCCeEEEEEEEcCC----CCCcc
Q 039386 327 IVPLFEKILSASDAGR----IGRLVLPKACAEAYFPHISQS---EG-VP--LRVQDVKGKEWVFQFRFWPN----NNSRM 392 (582)
Q Consensus 327 ~~~LF~KvLT~SDVg~----~gRLVIPK~~AEa~FP~Ld~~---eG-v~--L~v~D~~Gk~W~FRf~yw~N----n~SR~ 392 (582)
-...|.|.|++.|++. ...+.+||..++.+||.|... .. +. +.+-|...-.+.++++|+.| ..+..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 3568999999999995 458999998789999988732 22 22 33334434455999999931 23457
Q ss_pred eEecCch-hhhhccCCccccc
Q 039386 393 YVLEGVT-PCIQSMQLRAGDT 412 (582)
Q Consensus 393 YvLtGWs-~FVrsK~LqAGD~ 412 (582)
|-|+.|. .+.=.....+||.
T Consensus 97 yRLt~~~~~~~~~~~a~~GDL 117 (404)
T 1na6_A 97 KRITRWGRGSPLQDPENTGAL 117 (404)
T ss_dssp EEEECCCTTSGGGCGGGTTCE
T ss_pred eEEeecCCCCcccccCCCCCE
Confidence 8888774 4555677888998
No 10
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.66 E-value=0.08 Score=50.53 Aligned_cols=56 Identities=21% Similarity=0.542 Sum_probs=43.6
Q ss_pred chhhhhhcccccccccccCCCCCcccccccCCcccccccccc-ccceeec----CCCcccccccCCCc
Q 039386 34 CYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASN-SFLELLD----YGGVGCRSCAMSPR 96 (582)
Q Consensus 34 C~~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHcgCi~s~-~~f~lLD----~GGv~C~~C~~~~~ 96 (582)
|.-|+..|....| +.-|..|..|..|+|-.|+.-. ..+++++ .....|..|..+..
T Consensus 5 CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 5 CPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 8888888888765 5679999999999999999542 2245553 34789999998864
No 11
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=88.78 E-value=0.18 Score=45.03 Aligned_cols=78 Identities=21% Similarity=0.446 Sum_probs=44.3
Q ss_pred CccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhccccccccccc-------CCCCCcccccccCCcccccccccc
Q 039386 3 PRICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFH-------LEEPGWRECNFCSKRLHCGCRASN 75 (582)
Q Consensus 3 ~k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~FCe~FH-------~~~sGWR~C~~C~KrlHcgCi~s~ 75 (582)
.+.|.| |+++.+..||+| -.|. .||+.||.-|-.-.+=.-.. .....=+.|..|+- ...
T Consensus 5 ~~~C~~--Cg~~~Tp~WRr~---~~g~--~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t-------~~t 70 (115)
T 4hc9_A 5 GRECVN--CGATSTPLWRRD---GTGH--YLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQT-------TTT 70 (115)
T ss_dssp -CCCTT--TCCSCCSSCEEC---TTSC--EECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCC-------SCC
T ss_pred CCCCCC--CCCccCCcceEC---CCCC--CcCcchhhhhhhcccccccccccccccccccccccCCCcCC-------CCc
Confidence 366754 999999999998 4453 69999999653211111000 01122356766653 122
Q ss_pred ccceeecCCCcccccccCC
Q 039386 76 SFLELLDYGGVGCRSCAMS 94 (582)
Q Consensus 76 ~~f~lLD~GGv~C~~C~~~ 94 (582)
...--=+.|-+-|-+|.--
T Consensus 71 p~WRr~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 71 TLWRRNANGDPVCNACGLY 89 (115)
T ss_dssp SSCEECTTSCEECHHHHHH
T ss_pred ceeEECCCCCCcchHHHHH
Confidence 3333335666788888643
No 12
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=75.87 E-value=0.98 Score=40.24 Aligned_cols=32 Identities=34% Similarity=0.925 Sum_probs=26.2
Q ss_pred ccccCCCCCCCCCcccccCeeeccCCchhhchhhhhhcc
Q 039386 4 RICMNPKCRTANTHEWKKGWLLRSGVCADLCYDCGSAYE 42 (582)
Q Consensus 4 k~C~N~~C~~~~~~~wrkGW~lrsG~~a~LC~~CgsayE 42 (582)
..|.| |+++.+.+||+| -.| ..||..||.-|-
T Consensus 60 ~~C~~--C~t~~tp~WRr~---~~g--~~lCNaCgl~~~ 91 (115)
T 4hc9_A 60 TSCAN--CQTTTTTLWRRN---ANG--DPVCNACGLYYK 91 (115)
T ss_dssp CCCTT--TCCSCCSSCEEC---TTS--CEECHHHHHHHH
T ss_pred ccCCC--cCCCCcceeEEC---CCC--CCcchHHHHHHH
Confidence 45654 999999999998 556 589999998874
No 13
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.69 E-value=2.4 Score=33.05 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=30.5
Q ss_pred CCcccccccCCccccccccccccceeecCCCcccccccCCC
Q 039386 55 PGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSP 95 (582)
Q Consensus 55 sGWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~~ 95 (582)
.-|-.|..|..|.|-.|+--. .-++-+..--.|..|..+.
T Consensus 20 ~~mI~Cd~C~~WfH~~Cvgl~-~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 20 EFWICCDLCEMWFHGKCVKIT-PARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCEEECSSSCCEEETTTTTCC-TTGGGGCSSCCCHHHHTTT
T ss_pred CCEEEccCCCCCCCccccCcC-hhHhcCCCcEECCCCcCcC
Confidence 459999999999999998653 2233334678899998775
No 14
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=50.50 E-value=4.9 Score=32.22 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=35.0
Q ss_pred CCchhhchhhhhhcccccccccccCCCCCcccccccCCccccccccccccceeecCCCcccccccCC
Q 039386 28 GVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMS 94 (582)
Q Consensus 28 G~~a~LC~~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~ 94 (582)
++-...|..|+..+. ..-|-.|..|..|.|-.|+--... . ...|---|..|..+
T Consensus 15 ~~~~~~C~~C~~~~~-----------~~~mi~CD~C~~wfH~~Cv~~~~~-~-~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-----------GSPMIGCDDCDDWYHWPCVGIMAA-P-PEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCS-----------SCCEEECSSSSSEEEHHHHTCSSC-C-CSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCC-----------CCCEEEcCCCCcccccccCCCCcc-C-CCCCCEEChhccCc
Confidence 333445666665531 234899999999999999864322 1 22367788888654
No 15
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.95 E-value=8.9 Score=31.26 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCcccccccCCccccccccccccceeecCCCcccccccCCCcc
Q 039386 54 EPGWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRL 97 (582)
Q Consensus 54 ~sGWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~~~~ 97 (582)
..-|-.|..|..|.|-.|+--. .-++.+..---|..|..+...
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~-~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIE-EENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCC-HHHHTTCSBBCCTTTTTTSCS
T ss_pred CCceEEcCCCCCcEEeeecCcc-cccccCCCeEECCCcccccCC
Confidence 4569999999999999998653 233334567889999887543
No 16
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.82 E-value=6.3 Score=31.79 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=28.5
Q ss_pred CcccccccCCccccccccccccc-eee--cCCCcccccccCCC
Q 039386 56 GWRECNFCSKRLHCGCRASNSFL-ELL--DYGGVGCRSCAMSP 95 (582)
Q Consensus 56 GWR~C~~C~KrlHcgCi~s~~~f-~lL--D~GGv~C~~C~~~~ 95 (582)
-|-.|..|..|.|-.|+--...- +.| ...---|..|..+.
T Consensus 29 ~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 29 FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 48999999999999999653321 112 24567788887664
No 17
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.60 E-value=3.7 Score=37.50 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred CcccccccCCccccccccccccceeecCCCcccccccCCCcc
Q 039386 56 GWRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSPRL 97 (582)
Q Consensus 56 GWR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~~~~ 97 (582)
-|-.|..|.+|.|-.|+.- ..-+.-+.+---|..|......
T Consensus 22 ~mi~Cd~C~~WfH~~Cv~~-~~~~~~~~~~~~C~~C~~~~~~ 62 (174)
T 2ri7_A 22 FYIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTEDA 62 (174)
T ss_dssp CEEECTTTCCEEEHHHHTC-CHHHHTTCSSCCCHHHHHHHHH
T ss_pred CEeECCCCCchhChhhcCC-chhhccCccCeecCCCcchhcc
Confidence 3999999999999999854 2222233567889999887533
No 18
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=43.41 E-value=7.9 Score=29.61 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.7
Q ss_pred CCCCcccccccCCcc
Q 039386 53 EEPGWRECNFCSKRL 67 (582)
Q Consensus 53 ~~sGWR~C~~C~Krl 67 (582)
+..-+|.|+.|||+|
T Consensus 13 ~~~~YRvC~~CgkPi 27 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPL 27 (44)
T ss_dssp CCCCEEECTTTCCEE
T ss_pred ccccchhhcccCCcc
Confidence 456789999999987
No 19
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.20 E-value=15 Score=29.60 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=30.0
Q ss_pred ccccccccCCCCC--cccccccCCccccccccccccceeecCCCcccccccCC
Q 039386 44 FIFCNTFHLEEPG--WRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMS 94 (582)
Q Consensus 44 ~~FCe~FH~~~sG--WR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~ 94 (582)
.+|| +-.....| |-.|..|..|.|-.|+--... ++- .---|..|.++
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~--~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVP--EVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCC--SSCCCHHHHTC
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCC--CcEECCCCCCC
Confidence 4455 33333333 899999999999999975443 222 34567777553
No 20
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=38.06 E-value=11 Score=32.63 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=37.3
Q ss_pred hhchhhhhhcccccccccccCCCCCccccc-ccCCcccccccccc-ccceee---cCCCcccccccCCCc
Q 039386 32 DLCYDCGSAYENFIFCNTFHLEEPGWRECN-FCSKRLHCGCRASN-SFLELL---DYGGVGCRSCAMSPR 96 (582)
Q Consensus 32 ~LC~~CgsayE~~~FCe~FH~~~sGWR~C~-~C~KrlHcgCi~s~-~~f~lL---D~GGv~C~~C~~~~~ 96 (582)
..|..|+..|.. +..|..|. .|.+|.|-.|+--. ..++.| ..+---|..|.++..
T Consensus 4 ~~C~iC~~p~~~----------~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVND----------DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCT----------TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCC----------CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457777776642 23488887 99999999998532 233333 225678999988753
No 21
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.54 E-value=13 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.1
Q ss_pred cccccccCCccccccccccccceeecCCCcccccccCCC
Q 039386 57 WRECNFCSKRLHCGCRASNSFLELLDYGGVGCRSCAMSP 95 (582)
Q Consensus 57 WR~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C~~C~~~~ 95 (582)
|-.|..|..|.|-.|+--... +.+ ..---|..|..+.
T Consensus 31 mI~Cd~C~~W~H~~Cvg~~~~-~~~-~~~~~C~~C~~~~ 67 (72)
T 1wee_A 31 MLACDGCGVWHHTRCIGINNA-DAL-PSKFLCFRCIELS 67 (72)
T ss_dssp EEECSSSCEEEETTTTTCCTT-SCC-CSCCCCHHHHHHC
T ss_pred EEECCCCCCccCCeeeccCcc-ccC-CCcEECCCccCCC
Confidence 999999999999999976432 112 2556788887654
No 22
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=33.79 E-value=10 Score=33.19 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.2
Q ss_pred CCcccccccCCccc
Q 039386 55 PGWRECNFCSKRLH 68 (582)
Q Consensus 55 sGWR~C~~C~KrlH 68 (582)
.-.|.|+.|||+|-
T Consensus 73 ~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 73 IQYRVCEKCGKPLA 86 (96)
T ss_dssp CCCEEETTTCCEEC
T ss_pred ccchhhhccCCcee
Confidence 56899999999973
No 23
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=31.99 E-value=56 Score=27.07 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=32.3
Q ss_pred CcceEecCchhhhhccCCccccccccccccccCceEEEEeeCCCCeEEEeEEeC
Q 039386 390 SRMYVLEGVTPCIQSMQLRAGDTSMIHSILTRDDKITFSRIDPGGKLVMGFRKA 443 (582)
Q Consensus 390 SR~YvLtGWs~FVrsK~LqAGD~i~iy~~~~~~~kVvFsR~~~~GkL~IG~RRa 443 (582)
+-.|.++==.+++++.+++.||. |...=.+.+|++++..+|-
T Consensus 22 ~etyYInIPaeI~kaLgIk~gD~------------fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 22 HTTFYLLIPKDIAEALDIKPDDT------------FILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCCEEEEECHHHHHHTTCCTTCC------------EEEEEEEETTEEEEEEEEC
T ss_pred ceEEEEeCcHHHHHHhCCCCCCE------------EEEEEecCCCeEEEEehhh
Confidence 34455554579999999999999 6665555589999999883
No 24
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.16 E-value=18 Score=28.87 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=28.6
Q ss_pred chhhchhhhhhcccccccccccCCCCCccccc-ccCCccccccccccc-cceee
Q 039386 30 CADLCYDCGSAYENFIFCNTFHLEEPGWRECN-FCSKRLHCGCRASNS-FLELL 81 (582)
Q Consensus 30 ~a~LC~~CgsayE~~~FCe~FH~~~sGWR~C~-~C~KrlHcgCi~s~~-~f~lL 81 (582)
=..+|-.|+..|. .+..|..|. .|.+|.|-.|+--.. .++.|
T Consensus 7 ~~~~C~~C~~p~~----------~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l 50 (65)
T 2vpb_A 7 PVYPCGICTNEVN----------DDQDAILCEASCQKWFHRICTGMTETAYGLL 50 (65)
T ss_dssp --CBCTTTCSBCC----------TTSCEEEBTTTTCCEEEHHHHTCCHHHHHHH
T ss_pred CcCcCccCCCccC----------CCCCeEecccCccccCchhccCCCHHHHHHh
Confidence 3456777776664 356799999 999999999985432 34444
No 25
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=25.97 E-value=26 Score=29.91 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=26.1
Q ss_pred CCcccccccCCccccccccccccceeec--CCCcccccccCC
Q 039386 55 PGWRECNFCSKRLHCGCRASNSFLELLD--YGGVGCRSCAMS 94 (582)
Q Consensus 55 sGWR~C~~C~KrlHcgCi~s~~~f~lLD--~GGv~C~~C~~~ 94 (582)
.=+..|..|..++|-+|..-...-.+.+ ..+-.|+.|...
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 3377899999999999986433222222 245778888654
No 26
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=23.83 E-value=26 Score=29.62 Aligned_cols=49 Identities=29% Similarity=0.764 Sum_probs=33.0
Q ss_pred CCcccccCeeeccCCchhhchhhhhhcccccccccccCCCCCcccccccCCcccccccccc
Q 039386 15 NTHEWKKGWLLRSGVCADLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSKRLHCGCRASN 75 (582)
Q Consensus 15 ~~~~wrkGW~lrsG~~a~LC~~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHcgCi~s~ 75 (582)
-.+.|.+| -|-++ ..|+.|... |..+. .-.||| |.=|+.-||=.|+.+.
T Consensus 26 ~~H~WveG-Nl~~~---s~C~vC~k~------c~s~~-~L~g~r-C~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 26 MPHQWLEG-NLPVS---AKCTVCDKT------CGSVL-RLQDWR-CLWCKAMVHTSCKESL 74 (84)
T ss_dssp BCCCEEES-CCCTT---CBCSSSCCB------CCCTT-TCCCEE-ESSSCCEECHHHHHHC
T ss_pred ceeeEEcc-CCCCC---CEeCCCCCE------eCCcc-CCCCCC-CcccChhHHHHHHHhc
Confidence 35778877 22222 467776653 33322 338999 9999999999998764
No 27
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.28 E-value=67 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=22.4
Q ss_pred ceEEEEECCCCeEEEEEEEcCCCCCcceEecCchhhhhccCCcccccccc
Q 039386 366 VPLRVQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTSMI 415 (582)
Q Consensus 366 v~L~v~D~~Gk~W~FRf~yw~Nn~SR~YvLtGWs~FVrsK~LqAGD~i~i 415 (582)
..+.+.|..| ..+++.| +.. |++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i 68 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRI 68 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEE
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEE
Confidence 3689999999 6889999 222 999999433
No 28
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=21.41 E-value=20 Score=34.31 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=18.5
Q ss_pred hhchhhhhhcccccccccccCCCCCcccccccCC
Q 039386 32 DLCYDCGSAYENFIFCNTFHLEEPGWRECNFCSK 65 (582)
Q Consensus 32 ~LC~~CgsayE~~~FCe~FH~~~sGWR~C~~C~K 65 (582)
.-|..||..- -|+....||-.|..||.
T Consensus 15 ~~CP~Cg~~d-------~~~~~~dg~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSD-------GNSLFSDGHTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSS-------CEEEETTSCEEETTTCC
T ss_pred CcCCCCCCCC-------CceEeCCCCeecccCCC
Confidence 4689998862 24443457888888875
No 29
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.88 E-value=20 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=24.9
Q ss_pred cccccccCCccccccccccccceee-cCCCcccccccCCC
Q 039386 57 WRECNFCSKRLHCGCRASNSFLELL-DYGGVGCRSCAMSP 95 (582)
Q Consensus 57 WR~C~~C~KrlHcgCi~s~~~f~lL-D~GGv~C~~C~~~~ 95 (582)
--.|..|.+..|-.|..-...-+.+ ..|.=-|..|....
T Consensus 23 ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 23 MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp EEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred EEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3345678999999998753222212 45777888887653
No 30
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.31 E-value=25 Score=26.82 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=33.3
Q ss_pred chhhchhhhhhcccc-cccccccCCCCCcc------cccccCCccccccccccccceeecCCCccc-ccccCC
Q 039386 30 CADLCYDCGSAYENF-IFCNTFHLEEPGWR------ECNFCSKRLHCGCRASNSFLELLDYGGVGC-RSCAMS 94 (582)
Q Consensus 30 ~a~LC~~CgsayE~~-~FCe~FH~~~sGWR------~C~~C~KrlHcgCi~s~~~f~lLD~GGv~C-~~C~~~ 94 (582)
||..|.+|+...... .+ ......=|- .|..|++.| ....|...| |.+-| ..|.++
T Consensus 1 fa~~C~~C~~~I~~~~~~---v~a~~~~wH~~~~CF~C~~C~~~L------~~~~f~~~~-g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQR---VTYNNFSWHASTECFLCSCCSKCL------IGQKFMPVE-GMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTSCE---EEETTEEEETTTTTSBCTTTCCBC------TTSCCEEET-TEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCceE---EEECCCccCCCCCCEECCCCCCcC------CCCceEEEC-CEEecCHHHhhh
Confidence 678899999887743 22 122233342 456666666 345566666 78888 777654
Done!