CHR4 protein (Arabidopsis thaliana)

STRING 9.05

CHR4 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	CHR4	CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding; CHROMATIN REMODELING 4 (CHR4); FUNCTIONS IN- in 7 functions; INVOLVED IN- chromatin assembly or disassembly, regulation of transcription; LOCATED IN- chromatin, nucleus; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, PHD-type (InterPro-IPR001965), Chromo domain (InterPro-IPR000953), SNF2-related (InterPro-IPR000330), Zinc finger, RING/FYVE/PHD-type (InterPro-IPR013083), Chromo [...] (2242 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G05180	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; EXPRESSED IN- 20 pla [...] (432 aa)			•	0.885
	AT4G07330	transposable element gene; CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-13 P-value b [...] (430 aa)			•	0.865
	AT4G30840	WD-40 repeat protein family; WD-40 repeat protein family; FUNCTIONS IN- molecular_function unkn [...] (361 aa)		•		0.819
	TPR2	TPR2 (TOPLESS-RELATED 2); TOPLESS-RELATED 2 (TPR2); INVOLVED IN- primary shoot apical meristem [...] (1131 aa)	•	•		0.787
	PI	PI (PISTILLATA); DNA binding / transcription factor; Floral homeotic gene encoding a MADS domai [...] (208 aa)		•		0.631
	AG	AG (AGAMOUS); DNA binding / transcription factor; Floral homeotic gene encoding a MADS domain t [...] (252 aa)		•		0.631
	AP3	AP3 (APETALA 3); DNA binding / transcription factor; Floral homeotic gene encoding a MADS domai [...] (232 aa)		•		0.631
	AP1	AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activ [...] (256 aa)		•		0.631
	SEP3	SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor; Member of the MADs box [...] (251 aa)		•		0.631
	AT3G19120	unknown protein; unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 16 plant structures; E [...] (446 aa)			•	0.623

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Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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