BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039387
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 55 IGEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+G D H C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+
Sbjct: 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 63 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
EC +C +GGEL+CCD CP +HL CL+PPL ++P G+W+C SC
Sbjct: 10 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 55 IGEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+G D H C +C +GGELLCCDTCP++YH+ CL P L +VP G W+CP C+
Sbjct: 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 63 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
EC +C +GGEL+CCD CP +HL CL+PPL ++P G+W+C SC
Sbjct: 7 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
C +C NGGELLCC+ CP +HL C P L + P G W C C DL KP
Sbjct: 7 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFC---RDLSKP 54
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 56 GEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107
G GH C +C G+LL CDTC YHL CL PPL+ +P G W CP C +
Sbjct: 4 GSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108
C +C NGG+LLCC+ CP +HL C P L P G W C C ++
Sbjct: 10 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C E + P
Sbjct: 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPP 72
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107
C +C G+LL CDTC YHL CL PPL+ +P G W CP C +
Sbjct: 8 CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
E H C +C GGE++ CDTCP YH+ CL P +E P G W CP C
Sbjct: 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 64 CLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C GE L+ CD C +HL CL P L +VP G W+CP+C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEK 113
C +C G+L+ C+ C +HL C P L+DVP W C C L DL++
Sbjct: 5 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 54
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 69 NGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108
N +LL CD C YH+ CL PP+ + P GSW C C EL
Sbjct: 69 NDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEK 113
C +C G+L+ C+ C +HL C P L+DVP W C C L DL++
Sbjct: 28 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 64 CLICCNGGELLCCDT--CPNTYHLQCLTPPLEDVPPGSWKCP--SCSELEDLEKPISHLW 119
C C +GGEL+ CD CP YHL CL L P G W+CP C E
Sbjct: 18 CFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAAVSFCEFC 75
Query: 120 KSSFKKSILASKLV 133
SF K LV
Sbjct: 76 PHSFCKDHEKGALV 89
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 74 LCCDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
L CD C +H+ CL PPL VP W CP C
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 74 LCCDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
L CD C +H+ CL PPL VP W CP C
Sbjct: 206 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 72 ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
++L CDTC YH CL P ++ VP WKC +C
Sbjct: 68 KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 63 ECLICCNGGELL---CCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEK 113
C +C + G+LL C TC YH CL + + W+CP C ++ ++
Sbjct: 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQ 62
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 69 NGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
N +L CD+C +H++C PPL +P G W C C
Sbjct: 73 NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 69 NGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
N +L CD+C +H++C PPL +P G W C C
Sbjct: 71 NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPPGS-WKCPSC 105
CD C YH+ CL PPL+ VP W CPSC
Sbjct: 44 CDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 23 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 38 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire (aire-phd2)
Length = 66
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
C +C +G ++L C C +H +C P P +C SCS
Sbjct: 15 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCS 57
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 36 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 36 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 41 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 CDTCPNTYHLQCLTPPLEDVPP-GSWKCPSC 105
CD C +H+ CL PPL VP W CP C
Sbjct: 44 CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|1WY1|A Chain A, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
pdb|1WY1|B Chain B, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
pdb|1WY1|C Chain C, Crystal Structure Of The Ph0671 Protein From Pyrococcus
Horikoshii Ot3
Length = 172
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 25 GALNSYAGASLSLDSPDLKDNGSLDKRQYTIGEDGHY 61
G+ + G + DSP ++ NG+LD+ IGE HY
Sbjct: 11 GSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHY 47
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 64 CLICCNGGE-----LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C IC +G +L CD C H +C P +P G W C C
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHC 63
>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
pdb|2LBM|A Chain A, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
Length = 142
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 58 DGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPL 92
DG +C C GG L+CCD C N + +C+ L
Sbjct: 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNL 94
>pdb|2JM1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
Length = 141
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 58 DGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPL 92
DG +C C GG L+CCD C N + +C+ L
Sbjct: 59 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNL 93
>pdb|3QL9|A Chain A, Monoclinic Complex Structure Of Atrx Add Bound To
Histone H3k9me3 Peptide
pdb|3QLA|A Chain A, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|D Chain D, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLC|A Chain A, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|B Chain B, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLN|A Chain A, Crystal Structure Of Atrx Add Domain In Free State
pdb|3QLN|B Chain B, Crystal Structure Of Atrx Add Domain In Free State
Length = 129
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 58 DGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPL 92
DG +C C GG L+CCD C N + +C+ L
Sbjct: 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNL 88
>pdb|2PV0|B Chain B, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|A Chain A, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|C Chain C, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PVC|B Chain B, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|A Chain A, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|C Chain C, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
Length = 386
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 53 YTIGEDGHYYECLICCNGGELLCCDT--CPNTYHLQCL 88
+ +DG+ C ICC+G LL C C Y +C+
Sbjct: 85 FLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECV 122
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 71 GELLCCDT--CP-NTYHLQCLTPPLEDVPPGSWKCPSCS 106
GE++ CD CP +H C+ L + P G W CP C+
Sbjct: 17 GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCT 53
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 109 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 148
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 33 ASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGE 72
A + LD L D+G++ R Y EDG Y+ + +G +
Sbjct: 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD 149
>pdb|1WEV|A Chain A, Solution Structure Of Phd Domain In Protein Np_082203
Length = 88
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 64 CLIC-----CNGGELLCCDTCPNTYHLQCLTPPLEDV----PPGSWKCPSCS 106
C++C +G +L+ C C N YH C P + D P W C C+
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 69 NGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
N +L CD C H +C P +P G W C C
Sbjct: 38 NSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHC 72
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With
Histone H3
Length = 159
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 53 YTIGEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLED--VPPGS---------WK 101
Y +DG+ C ICC G E+L C N +C D V PG+ W
Sbjct: 71 YQYDDDGYQSYCTICCGGREVL---MCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWN 127
Query: 102 CPSCS 106
C C
Sbjct: 128 CYMCG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,441,106
Number of Sequences: 62578
Number of extensions: 376659
Number of successful extensions: 661
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 71
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)