BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039387
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
PE=1 SV=1
Length = 1915
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 57 EDGHYYE-CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
ED H+ E C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+
Sbjct: 437 EDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
E H C +C GGE++ CDTCP YH+ CL P +E P G W CP C
Sbjct: 359 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 407
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
PE=1 SV=2
Length = 1912
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 57 EDGHYYE-CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
ED H+ E C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+
Sbjct: 444 EDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
E H C +C GGE++ CDTCP YH+ CL P +E P G W CP C
Sbjct: 366 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 414
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog
OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 60 HYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
H C +C +GGELLCCD+CP+ YH CL PPL+ +P G W+CP CS
Sbjct: 436 HQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 56 GEDG---HYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
GEDG H C +C GGE++ CDTCP YHL CL P L++ P G W CP C
Sbjct: 369 GEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 60 HYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
H C +C +GGELLCCD CP++YHL CL PPL ++P G W CP C+
Sbjct: 415 HMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 57 EDGHYYE------CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
+DG YE C +C GGE++ CDTCP YHL CL P LE P G W CP C
Sbjct: 333 DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHC 387
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 58 DGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
D H C +C +GGELLCCD C ++YH+ CL PPL D+P G W CP C+
Sbjct: 453 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
E H C +C GGE++ CDTCP YHL CL P L+ P G W CP C
Sbjct: 375 ETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
Query: 40 PDLKDNG--SLDKRQYTIGEDGHYYE---CLICCNGGELLCCDTCPNTYHLQCLTPPLED 94
PD K G S DKR T + + + C +C +GG+LLCCD+CP+ YH CL+PPL+
Sbjct: 9 PDWKTPGKASKDKRPKTNAKKQKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKS 68
Query: 95 VPPGSWKCPSCSELE-DLEKPISHLWKSSFKKSI 127
+P G W CP C L EK +S W+ + +S+
Sbjct: 69 IPKGDWICPRCIPLPGKAEKILS--WRWALDRSV 100
>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1
Length = 545
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 63 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
EC +C +GGEL+CCD CP +HL CL+PPL ++P G+W+C SC
Sbjct: 298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340
>sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1
Length = 552
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 63 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
EC +C +GGEL+CCD CP +HL CL+PPL+++P G W+C C
Sbjct: 300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCC 342
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
C +C +G E+L C C +H +C P P + +C SCS
Sbjct: 434 CSVCGDGTEVLRCAHCAAAFHWRCHFPTAAARPGTNLRCKSCS 476
>sp|Q6ZPK0|PF21A_MOUSE PHD finger protein 21A OS=Mus musculus GN=Phf21a PE=1 SV=2
Length = 659
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 58 DGHYYE--CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKPI 115
DG +E C +C G+LL CDTC YHL CL PPL+ +P G W CP C + + L+K
Sbjct: 463 DGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQD-QMLKKEE 521
Query: 116 SHLWKSSFKKSILASKLVMQVRHKESSQSFFE 147
+ W + +I+ S + + +E Q +
Sbjct: 522 AIPWPGTL--AIVHSYIAYKAAKEEEKQKLLK 551
>sp|Q96BD5|PF21A_HUMAN PHD finger protein 21A OS=Homo sapiens GN=PHF21A PE=1 SV=1
Length = 680
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 58 DGHYYE--CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKPI 115
DG +E C +C G+LL CDTC YHL CL PPL+ +P G W CP C + + L+K
Sbjct: 483 DGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD-QMLKKEE 541
Query: 116 SHLWKSSFKKSILASKLVMQVRHKESSQSFFE 147
+ W + +I+ S + + +E Q +
Sbjct: 542 AIPWPGTL--AIVHSYIAYKAAKEEEKQKLLK 571
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog
OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC---SELEDLEKPISHLWK 120
C IC +L CDTCP++YH C+ PPL ++P G W CP C + +EK +S WK
Sbjct: 331 CRICKETSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEPAQRIEKILSWRWK 390
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 50 KRQYTIGEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107
+++ + E+ H C +C GEL+ CDTC YH+ C+ +E P G W CP C E
Sbjct: 254 RKEQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCPHCEE 311
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila
melanogaster GN=E(bx) PE=1 SV=2
Length = 2669
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 60 HYYE-CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
HY + C +C G+LLCC+TCP YHL+C+ PP+ DVP W+C C
Sbjct: 337 HYDDHCRVCHRLGDLLCCETCPAVYHLECVDPPMNDVPTEDWQCGLC 383
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1
SV=3
Length = 1242
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLE 112
C +C NGGELLCCD CP YHL C P L P G W C C L E
Sbjct: 999 CAVCINGGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1047
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF
PE=1 SV=3
Length = 3046
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C G+LLCC+TC YHL+C+ PPLE+VP W+C C
Sbjct: 393 CRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVC 434
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1
Length = 1544
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y CL+C +G + LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 310 YVCLLCGSGNDEDRLLLCDGCDDSYHTFCLVPPLHDVPKGDWRCPKC 356
>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2
SV=1
Length = 1163
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 52 QYTIGEDGHYYE--CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELE 109
Q T G++ E C +C NGGELLCCD CP +H+ C P L+ P G W C C L
Sbjct: 910 QTTAGKEDDPNEDWCAVCQNGGELLCCDHCPKVFHITCHIPTLKSSPSGDWMCTFCRNLA 969
Query: 110 DLE 112
+ E
Sbjct: 970 NPE 972
>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24
PE=1 SV=3
Length = 1050
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
C +C NGGELLCC+ CP +HL C P L + P G W C C DL KP
Sbjct: 829 CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFC---RDLSKP 876
>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24
PE=1 SV=1
Length = 1051
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
C +C NGGELLCC+ CP +HL C P L + P G W C C DL KP
Sbjct: 830 CAVCQNGGELLCCEKCPKVFHLTCHVPTLTNFPSGEWICTFC---RDLSKP 877
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y CL+C +G + LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 310 YVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 356
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y CL+C +G + LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 285 YVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPQC 331
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 47 SLDKRQYTIGEDGHYYECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCP 103
++ R ++ + Y C IC G E LL CD C +TYH+ CL PPL ++P G W+CP
Sbjct: 303 TMQLRTHSSAQFIDLYVCRICSRGDEDDKLLLCDGCDDTYHIFCLIPPLPEIPRGVWRCP 362
Query: 104 SC 105
C
Sbjct: 363 KC 364
>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2
SV=4
Length = 1216
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 27/49 (55%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLE 112
C +C NGGELLCCD CP +HL C P L P G W C C L E
Sbjct: 973 CAVCLNGGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPE 1021
>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1
SV=3
Length = 1127
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 47 SLDKRQYTIGEDGHYYE-------CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGS 99
SL R IG DG+ + C +C NGG+LLCC+ CP +HL C P L P G
Sbjct: 866 SLMHRSARIGGDGNNKDDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGD 925
Query: 100 WKCPSCSELEDLEKP 114
W C C D+ KP
Sbjct: 926 WICTFC---RDIGKP 937
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y CL+C G + LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 296 YVCLVCGKGNDEDRLLLCDGCDDSYHTFCLIPPLTDVPKGDWRCPKC 342
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 71 GELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKPISHLWKSSFKKSILAS 130
G +L C+ C + +H C+ P + + P +W CP C L + P+ + +S+L+S
Sbjct: 1179 GAMLQCELCRDAFHSVCVRGPSDPLDPEAWLCPLC--LRSTKPPLDKI------RSLLSS 1230
Query: 131 KLVMQVRHKE 140
++VR E
Sbjct: 1231 LQRIRVRLPE 1240
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGG---ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y C+ C G +LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 294 YVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKC 340
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGG---ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y C+ C G +LL CD C ++YH CL PPL DVP G W+CP C
Sbjct: 294 YVCMFCGRGNNEDKLLLCDGCDDSYHTFCLLPPLPDVPKGDWRCPKC 340
>sp|Q96QT6|PHF12_HUMAN PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2
Length = 1004
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 56 GEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPL--EDVPPGSWKCPSCS 106
G ++ C C GG+LLCCD CP +HLQC PPL E +PPG W C C+
Sbjct: 51 GRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCT 103
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 62 YECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPS 104
+ C C L+ CD CP +H+ CL PPL +P G W CP+
Sbjct: 275 FTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPN 317
>sp|Q5SPL2|PHF12_MOUSE PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1
Length = 1003
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 56 GEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPL--EDVPPGSWKCPSCS 106
G ++ C C GG+LLCCD CP +HLQC PPL E +PPG W C C+
Sbjct: 51 GRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCT 103
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 62 YECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPS 104
+ C C L+ CD CP +H+ CL PPL +P G W CP+
Sbjct: 275 FTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPN 317
>sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1
SV=2
Length = 1142
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 47 SLDKRQYTIGEDGHYYE-------CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGS 99
+L R IG DG+ + C +C NGG+LLCC+ CP +HL C P L P G
Sbjct: 881 NLMHRSARIGGDGNSKDDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGD 940
Query: 100 WKCPSCSELEDLEKP 114
W C C D+ KP
Sbjct: 941 WICTFC---RDIGKP 952
>sp|Q96EK2|PF21B_HUMAN PHD finger protein 21B OS=Homo sapiens GN=PHF21B PE=2 SV=1
Length = 531
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKPIS 116
E H C C G L C TCP YHL CL PPL+ P G W CP C + + L+K
Sbjct: 348 EITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQ-KALKKDEG 406
Query: 117 HLWKSSFKKSILASKLVMQVRHKESSQSFFEKDDVECLAEKQTVSKRN 164
W +I+ S + + +E Q ++ E E Q + +R+
Sbjct: 407 VPWTGML--AIVHSYVTHKTVKEEEKQKLLQRGS-ELQNEHQQLEERD 451
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y C IC G E L CD C + YH+ CL PPL +VP G W+CP C
Sbjct: 324 YVCRICSRGDEVDKFLLCDGCSDNYHIFCLLPPLSEVPKGVWRCPKC 370
>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1
SV=1
Length = 1091
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
C +C NGG+LLCC+ CP +HL C P L P G W C C DL KP
Sbjct: 853 CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFC---RDLNKP 900
>sp|Q04779|RCO1_YEAST Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1
Length = 684
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 18 KSLPWGEGALNSYAGASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGELLCCD 77
KS +G+ ++ S + AS + DK TI + + C C G LCCD
Sbjct: 227 KSKLFGQNSIKSTSNASEKI---------FRDKNNSTIDFENEDF-CSACNQSGSFLCCD 276
Query: 78 TCPNTYHLQCLTPPLE--DVPPGSWKCPSC 105
TCP ++H CL PP++ ++P G W C C
Sbjct: 277 TCPKSFHFLCLDPPIDPNNLPKGDWHCNEC 306
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50 KRQYTIGEDGHYYECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+R ++ + Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 313 RRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCV 372
Query: 107 ELEDLEKPISHLWKSSFKKSILAS 130
E P + ++ + ++ L S
Sbjct: 373 MAECKRPPEAFGFEQATREYTLQS 396
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50 KRQYTIGEDGHYYECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+R ++ + Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 313 RRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCV 372
Query: 107 ELEDLEKPISHLWKSSFKKSILAS 130
E P + ++ + ++ L S
Sbjct: 373 MAECKRPPEAFGFEQATREYTLQS 396
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50 KRQYTIGEDGHYYECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+R ++ + Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 313 RRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCV 372
Query: 107 ELEDLEKPISHLWKSSFKKSILAS 130
E P + ++ + ++ L S
Sbjct: 373 MAECKRPPEAFGFEQATREYTLQS 396
>sp|A1YVX4|KDM5C_PIG Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1
Length = 1516
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50 KRQYTIGEDGHYYECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106
+R ++ + Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 272 RRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCV 331
Query: 107 ELEDLEKPISHLWKSSFKKSILAS 130
E P + ++ + ++ L S
Sbjct: 332 MAECKRPPEAFGFEQATREYTLQS 355
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 315 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 361
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
Y C +C G E LL CD C + YH+ CL PPL ++P G W+CP C
Sbjct: 315 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 361
>sp|Q8C966|PF21B_MOUSE PHD finger protein 21B OS=Mus musculus GN=Phf21b PE=2 SV=1
Length = 487
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 56 GEDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKPI 115
GE H C C G L C TC YHL CL PPL+ P G W CP C + + L+K
Sbjct: 302 GEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTPPKGLWVCPKC-QRKALKKDE 360
Query: 116 SHLWKSSFKKSILASKLVMQVRHKESSQSFFEKDDVECLAEKQTVSKRN 164
W +I+ S + + +E Q ++ E +E Q + +R+
Sbjct: 361 GVPWTGML--AIVHSYVTHKTVKEEEKQKLLQRGS-ELQSEHQQLEERD 406
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 62 YECLICCNGG---ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114
Y C IC G +L CD C ++YH CL PPL +P G W CP C +E++ KP
Sbjct: 449 YICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGEWLCPRCV-VEEVSKP 503
>sp|Q9UIG0|BAZ1B_HUMAN Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=BAZ1B PE=1 SV=2
Length = 1483
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 64 CLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C GE L+ CD C +HL CL P L +VP G W+CP+C
Sbjct: 1187 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 1231
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Mus musculus GN=Nsd1 PE=1 SV=1
Length = 2588
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C GG LLCCD+CP +H +CL D+P G+W C C
Sbjct: 1608 CFVCSEGGSLLCCDSCPAAFHRECLN---IDIPEGNWYCNDC 1646
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 63 ECLICCNGGELLCCDT--CPNTYHLQCLTPPLEDVPPGSWKCP 103
EC C + G+L+ C CP YH CL L P G W+CP
Sbjct: 2018 ECFSCGDAGQLVSCKKPGCPKVYHADCLN--LTKRPAGKWECP 2058
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 64 CLICCNGGELLCCDT-CPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C C GELL C+ C +HL+CL L ++P G + C C
Sbjct: 1444 CQNCEKLGELLLCEAQCCGAFHLECLG--LPEMPRGKFICNEC 1484
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Homo sapiens GN=NSD1 PE=1 SV=1
Length = 2696
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C GG LLCCD+CP +H +CL D+P G+W C C
Sbjct: 1710 CFVCSEGGSLLCCDSCPAAFHRECLN---IDIPEGNWYCNDC 1748
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 63 ECLICCNGGELLCCDT--CPNTYHLQCLTPPLEDVPPGSWKCP 103
EC C + G+L+ C CP YH CL L P G W+CP
Sbjct: 2120 ECFSCGDAGQLVSCKKPGCPKVYHADCLN--LTKRPAGKWECP 2160
>sp|Q9Z277|BAZ1B_MOUSE Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2
Length = 1479
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 64 CLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
C +C GE L+ CD C +HL CL P L +VP G W+CP+C
Sbjct: 1187 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 1231
>sp|Q9HB58|SP110_HUMAN Sp110 nuclear body protein OS=Homo sapiens GN=SP110 PE=1 SV=5
Length = 689
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 63 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105
EC +CC GG+LLCC TCP +H C PP+E W C C
Sbjct: 536 ECEVCCQGGQLLCCGTCPRVFHEDCHIPPVE-AKRMLWSCTFC 577
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107
C C GELL CDTCP YH C+ +E+ P G W C C E
Sbjct: 259 CEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIE 302
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVP-PGSWKCPSCSELE---DLEKPISHLW 119
C IC LL CD+C ++H C+ PPL +VP +W CP C ++ +EK + W
Sbjct: 320 CKICKETENLLLCDSCVCSFHAYCIDPPLTEVPKEETWSCPRCETVKPEHKIEKILCWRW 379
Query: 120 K 120
K
Sbjct: 380 K 380
>sp|Q09698|YA27_SCHPO Uncharacterized protein C2F7.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.07c PE=4 SV=1
Length = 607
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLE--DVPPGSWKCPSC 105
C C G LCC+TCPN++H C+ PP+E ++P +W C C
Sbjct: 266 CSACHGPGNFLCCETCPNSFHFTCIDPPIEEKNLPDDAWYCNEC 309
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 73 LLCCDTCPNTYHLQCLTPPLEDVPPG--SWKCPSCSE 107
+L CD C + +H CL PPL +P WKCP+ S+
Sbjct: 422 ILACDYCNSYWHPDCLNPPLATLPSNLRKWKCPNHSD 458
>sp|Q09819|YAC5_SCHPO Uncharacterized protein C16C9.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16C9.05 PE=1 SV=1
Length = 404
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 64 CLICCNGGELLCCDTCPNTYHLQCLTPPL--EDVPPGSWKCPSCS 106
C C G +CC+ CP ++HL CL PPL E++P GSW C +CS
Sbjct: 120 CSACGGRGLFICCEGCPCSFHLSCLEPPLTPENIPEGSWFCVTCS 164
>sp|Q9ULU4|PKCB1_HUMAN Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 PE=1
SV=2
Length = 1186
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 55 IGEDGHY-YECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108
+ +DG + C +C G++LCC+ CP YH +CL L P G W CP C ++
Sbjct: 81 VPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLR--LTSEPEGDWFCPECEKI 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,352,374
Number of Sequences: 539616
Number of extensions: 5071041
Number of successful extensions: 10637
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 10388
Number of HSP's gapped (non-prelim): 331
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)