Query 039387
Match_columns 322
No_of_seqs 262 out of 1153
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4299 PHD Zn-finger protein 99.1 1.9E-11 4.2E-16 125.7 1.8 97 61-157 253-361 (613)
2 KOG1244 Predicted transcriptio 99.1 3.4E-11 7.3E-16 113.8 3.3 85 24-108 220-331 (336)
3 PF00628 PHD: PHD-finger; Int 98.7 2.5E-09 5.5E-14 76.3 -0.1 45 63-107 1-50 (51)
4 KOG0825 PHD Zn-finger protein 98.6 2.2E-08 4.8E-13 105.4 2.2 49 62-110 216-268 (1134)
5 KOG0383 Predicted helicase [Ge 98.6 3.4E-08 7.3E-13 104.3 3.2 89 6-106 4-92 (696)
6 smart00249 PHD PHD zinc finger 98.5 8.9E-08 1.9E-12 65.4 3.2 43 63-105 1-47 (47)
7 KOG1973 Chromatin remodeling p 98.5 4.9E-08 1.1E-12 93.1 2.4 45 63-110 223-270 (274)
8 cd04718 BAH_plant_2 BAH, or Br 98.5 7.5E-08 1.6E-12 84.4 3.0 33 82-114 1-33 (148)
9 COG5034 TNG2 Chromatin remodel 98.2 9.7E-07 2.1E-11 83.2 3.8 45 61-108 221-270 (271)
10 KOG1512 PHD Zn-finger protein 98.2 5.3E-07 1.2E-11 86.3 1.8 48 61-110 314-365 (381)
11 KOG0957 PHD finger protein [Ge 97.8 3.2E-05 7E-10 78.9 5.5 49 62-110 545-600 (707)
12 KOG1245 Chromatin remodeling c 97.7 5.8E-06 1.3E-10 93.5 -0.5 55 56-110 1103-1160(1404)
13 KOG4443 Putative transcription 97.7 1.6E-05 3.5E-10 83.1 1.8 49 61-109 68-119 (694)
14 KOG4323 Polycomb-like PHD Zn-f 97.6 2.3E-05 4.9E-10 79.7 2.0 50 62-111 169-227 (464)
15 KOG1473 Nucleosome remodeling 97.2 0.00015 3.2E-09 79.7 2.4 50 59-108 342-391 (1414)
16 KOG0955 PHD finger protein BR1 97.2 0.00018 3.8E-09 79.5 2.9 50 59-110 217-271 (1051)
17 KOG0954 PHD finger protein [Ge 97.0 0.00025 5.4E-09 75.2 1.5 47 60-108 270-321 (893)
18 KOG0956 PHD finger protein AF1 96.6 0.00066 1.4E-08 71.7 1.1 45 62-108 6-57 (900)
19 PF13831 PHD_2: PHD-finger; PD 96.6 0.00034 7.4E-09 47.5 -0.7 34 71-106 2-36 (36)
20 COG5141 PHD zinc finger-contai 96.6 0.00074 1.6E-08 69.1 1.2 47 60-108 192-243 (669)
21 KOG4299 PHD Zn-finger protein 95.6 0.013 2.7E-07 61.6 4.3 134 61-232 47-181 (613)
22 KOG1246 DNA-binding protein ju 91.3 0.15 3.3E-06 56.2 3.2 52 59-110 153-206 (904)
23 KOG0383 Predicted helicase [Ge 89.7 0.045 9.8E-07 58.7 -2.5 54 57-110 502-556 (696)
24 PF15446 zf-PHD-like: PHD/FYVE 89.1 0.17 3.6E-06 45.7 1.0 29 63-91 1-35 (175)
25 KOG4443 Putative transcription 88.1 0.14 3E-06 54.5 -0.3 47 61-107 18-70 (694)
26 KOG0957 PHD finger protein [Ge 86.6 0.39 8.3E-06 50.0 1.9 49 62-110 120-181 (707)
27 KOG1473 Nucleosome remodeling 82.6 0.19 4E-06 56.4 -2.5 52 60-111 427-482 (1414)
28 PF14446 Prok-RING_1: Prokaryo 82.3 0.66 1.4E-05 34.5 1.1 29 62-90 6-38 (54)
29 KOG1512 PHD Zn-finger protein 78.2 0.78 1.7E-05 44.8 0.4 50 62-111 259-320 (381)
30 KOG1081 Transcription factor N 78.0 2.3 5E-05 43.9 3.8 49 57-108 85-133 (463)
31 PF12861 zf-Apc11: Anaphase-pr 77.4 0.81 1.8E-05 37.0 0.2 44 64-109 35-81 (85)
32 PF11793 FANCL_C: FANCL C-term 77.3 0.25 5.4E-06 38.0 -2.6 47 62-108 3-64 (70)
33 KOG3612 PHD Zn-finger protein 75.7 2.3 4.9E-05 44.8 2.9 53 57-110 56-110 (588)
34 PF13771 zf-HC5HC2H: PHD-like 75.3 1.5 3.2E-05 34.3 1.1 30 61-90 36-68 (90)
35 PF13832 zf-HC5HC2H_2: PHD-zin 73.0 1.8 3.8E-05 35.3 1.1 30 60-89 54-86 (110)
36 KOG1244 Predicted transcriptio 67.7 1.7 3.6E-05 42.3 -0.1 52 60-111 223-287 (336)
37 PF13639 zf-RING_2: Ring finge 63.0 0.64 1.4E-05 31.9 -2.9 39 63-106 2-44 (44)
38 KOG4628 Predicted E3 ubiquitin 60.9 5.9 0.00013 39.6 2.3 47 62-111 230-279 (348)
39 PF13901 DUF4206: Domain of un 60.0 6.8 0.00015 35.9 2.4 37 63-108 154-198 (202)
40 cd00162 RING RING-finger (Real 53.9 3.1 6.8E-05 27.0 -0.7 41 64-107 2-43 (45)
41 PF00301 Rubredoxin: Rubredoxi 47.6 11 0.00024 27.1 1.3 16 93-109 29-44 (47)
42 smart00184 RING Ring finger. E 46.4 3.6 7.8E-05 25.6 -1.3 39 64-105 1-39 (39)
43 cd00730 rubredoxin Rubredoxin; 44.1 15 0.00032 26.8 1.5 16 93-109 29-44 (50)
44 KOG1632 Uncharacterized PHD Zn 43.0 12 0.00025 37.4 1.1 44 67-110 69-115 (345)
45 PF10367 Vps39_2: Vacuolar sor 39.8 18 0.00039 28.5 1.6 29 61-89 78-108 (109)
46 PF15446 zf-PHD-like: PHD/FYVE 38.2 27 0.00059 31.8 2.6 20 73-92 124-143 (175)
47 KOG2114 Vacuolar assembly/sort 36.7 14 0.00031 40.9 0.7 45 59-110 838-883 (933)
48 PF12678 zf-rbx1: RING-H2 zinc 36.6 8.2 0.00018 29.7 -0.8 26 77-106 48-73 (73)
49 COG1773 Rubredoxin [Energy pro 35.6 24 0.00053 26.4 1.6 15 92-107 30-44 (55)
50 PF08746 zf-RING-like: RING-li 35.3 8.7 0.00019 26.9 -0.8 40 64-105 1-43 (43)
51 PHA02929 N1R/p28-like protein; 32.8 18 0.00038 34.5 0.5 47 60-110 173-227 (238)
52 PF05191 ADK_lid: Adenylate ki 32.6 29 0.00063 23.5 1.5 27 75-107 3-29 (36)
53 PF07649 C1_3: C1-like domain; 31.6 18 0.0004 23.0 0.3 25 63-87 2-29 (30)
54 KOG0827 Predicted E3 ubiquitin 30.6 10 0.00022 38.7 -1.5 43 63-106 6-52 (465)
55 PRK14559 putative protein seri 29.9 42 0.00092 36.3 2.9 43 64-107 4-49 (645)
56 PF00130 C1_1: Phorbol esters/ 29.6 37 0.00081 23.8 1.7 28 62-89 12-44 (53)
57 PF00641 zf-RanBP: Zn-finger i 28.6 23 0.00051 22.4 0.4 15 97-111 2-16 (30)
58 COG1107 Archaea-specific RecJ- 28.4 32 0.00068 37.1 1.6 38 62-110 69-106 (715)
59 smart00547 ZnF_RBZ Zinc finger 27.2 29 0.00064 21.0 0.7 13 98-110 1-13 (26)
60 PF10497 zf-4CXXC_R1: Zinc-fin 26.7 25 0.00055 29.2 0.4 46 62-107 8-69 (105)
61 PLN03208 E3 ubiquitin-protein 26.4 26 0.00056 32.5 0.4 51 60-110 17-79 (193)
62 KOG1829 Uncharacterized conser 26.1 18 0.00039 38.6 -0.6 31 73-110 531-561 (580)
63 PRK14873 primosome assembly pr 25.4 46 0.00099 36.1 2.2 42 66-110 385-433 (665)
64 TIGR00595 priA primosomal prot 25.1 42 0.00092 34.9 1.8 41 66-109 215-263 (505)
65 KOG0956 PHD finger protein AF1 23.5 39 0.00086 37.0 1.2 56 53-108 109-180 (900)
66 PF03107 C1_2: C1 domain; Int 23.2 65 0.0014 20.5 1.8 26 63-88 2-30 (30)
67 KOG4323 Polycomb-like PHD Zn-f 21.2 58 0.0013 34.0 1.9 47 60-108 82-133 (464)
68 TIGR01206 lysW lysine biosynth 21.2 54 0.0012 24.3 1.2 29 63-91 4-40 (54)
No 1
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.11 E-value=1.9e-11 Score=125.68 Aligned_cols=97 Identities=29% Similarity=0.600 Sum_probs=67.2
Q ss_pred cccccccccCCce---eecccCCCcccccccCCC--CCCCCCCCccCccCccccCCCCccchhh-----hhhhhhhH--H
Q 039387 61 YYECLICCNGGEL---LCCDTCPNTYHLQCLTPP--LEDVPPGSWKCPSCSELEDLEKPISHLW-----KSSFKKSI--L 128 (322)
Q Consensus 61 ~~~C~vC~~gG~L---l~CD~C~~~fH~~CL~PP--L~~~P~g~W~Cp~C~~~~~~~~~~~~~~-----~~~f~~~~--l 128 (322)
+++|..|++.|.. ||||+||++||++||+|| ...+|.|.|+|+.|..........+... ..-|.++. .
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t~~~~~I 332 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFTQFVSKI 332 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchhhhhhccchHHHHHHHHHhh
Confidence 4599999999976 999999999999999999 5799999999999987765322222111 11122222 2
Q ss_pred hhhhhhhhhcccccccccccchhhhhhhh
Q 039387 129 ASKLVMQVRHKESSQSFFEKDDVECLAEK 157 (322)
Q Consensus 129 ~~~L~~q~~~~~~~q~ff~~~d~e~l~Ek 157 (322)
....++|..+++.+..+|.++..+.-+.+
T Consensus 333 Ds~np~q~~lPe~i~~~~~~v~~g~~~~~ 361 (613)
T KOG4299|consen 333 DSHNPIQKILPENISESFGGVSRGDDGQY 361 (613)
T ss_pred hccchhhhhCCHHHHhhccccccCCCCcc
Confidence 22334666667777788887665554433
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.11 E-value=3.4e-11 Score=113.81 Aligned_cols=85 Identities=29% Similarity=0.540 Sum_probs=60.3
Q ss_pred CCCCCcccCCccccCCCCCCCCCCCCcc-----------------c-------cccCCccccccccccccC---Cceeec
Q 039387 24 EGALNSYAGASLSLDSPDLKDNGSLDKR-----------------Q-------YTIGEDGHYYECLICCNG---GELLCC 76 (322)
Q Consensus 24 ~~~~~~~~~~s~~l~s~~~k~~~~~~~~-----------------~-------~~~~~~~~~~~C~vC~~g---G~Ll~C 76 (322)
...++.++++|+.....+.+...+.+.. . ........+.+|.+|+.. .+||+|
T Consensus 220 ~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 220 IAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred cccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 7888999999985444444433333222 0 011122344567777753 469999
Q ss_pred ccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 77 DTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 77 D~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
|.|+++||+|||.||+.+.|+|.|.|..|...
T Consensus 300 ddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 300 DDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred cccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999754
No 3
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.70 E-value=2.5e-09 Score=76.33 Aligned_cols=45 Identities=38% Similarity=1.191 Sum_probs=38.3
Q ss_pred ccccccc---CCceeecccCCCcccccccCCCCC--CCCCCCccCccCcc
Q 039387 63 ECLICCN---GGELLCCDTCPNTYHLQCLTPPLE--DVPPGSWKCPSCSE 107 (322)
Q Consensus 63 ~C~vC~~---gG~Ll~CD~C~~~fH~~CL~PPL~--~~P~g~W~Cp~C~~ 107 (322)
+|.+|+. .++||.||.|.++||..|++|++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788887 567999999999999999999877 55556999999964
No 4
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.56 E-value=2.2e-08 Score=105.41 Aligned_cols=49 Identities=43% Similarity=0.956 Sum_probs=42.8
Q ss_pred ccccccccCC---ceeecccCCCc-ccccccCCCCCCCCCCCccCccCccccC
Q 039387 62 YECLICCNGG---ELLCCDTCPNT-YHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 62 ~~C~vC~~gG---~Ll~CD~C~~~-fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.-|.+|.... -||+||.|..+ ||+|||+|+|.++|-+.|||++|.-...
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~ 268 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEI 268 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhhh
Confidence 4589998764 39999999998 9999999999999999999999975444
No 5
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.55 E-value=3.4e-08 Score=104.30 Aligned_cols=89 Identities=34% Similarity=0.680 Sum_probs=67.9
Q ss_pred ccccchhhcccccCCCCCCCCCCcccCCccccCCCCCCCCCCCCccccccCCccccccccccccCCceeecccCCCcccc
Q 039387 6 ANKKRIVMKRKRKSLPWGEGALNSYAGASLSLDSPDLKDNGSLDKRQYTIGEDGHYYECLICCNGGELLCCDTCPNTYHL 85 (322)
Q Consensus 6 ~~~~~~~~k~KrkkiP~g~~~~~~~~~~s~~l~s~~~k~~~~~~~~~~~~~~~~~~~~C~vC~~gG~Ll~CD~C~~~fH~ 85 (322)
+..++-+..++.+.-|++++.+..++..+...... . ....+.+...|.+|..+|++|+||.|+.+||.
T Consensus 4 r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~-------~-----~~~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~ 71 (696)
T KOG0383|consen 4 RAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAK-------D-----DDWDDAEQEACRICADGGELLWCDTCPASFHA 71 (696)
T ss_pred cccCcCCCCcccccCCcCCccCcchhhcccccccc-------c-----CCcchhhhhhhhhhcCCCcEEEeccccHHHHH
Confidence 45556677788888888888777776543311000 0 01233456789999999999999999999999
Q ss_pred cccCCCCCCCCCCCccCccCc
Q 039387 86 QCLTPPLEDVPPGSWKCPSCS 106 (322)
Q Consensus 86 ~CL~PPL~~~P~g~W~Cp~C~ 106 (322)
+|++||+...|.+.|.|+.|.
T Consensus 72 ~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 72 SCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred HccCCCCCcCCccceeeeeec
Confidence 999999999999999999994
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.50 E-value=4.9e-08 Score=93.06 Aligned_cols=45 Identities=33% Similarity=0.952 Sum_probs=38.7
Q ss_pred cccccccCCceeeccc--CC-CcccccccCCCCCCCCCCCccCccCccccC
Q 039387 63 ECLICCNGGELLCCDT--CP-NTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 63 ~C~vC~~gG~Ll~CD~--C~-~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
+|. |...|+|+-||. |+ .|||+.|++ |...|.|.|||+.|.....
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhhh
Confidence 344 555799999997 99 999999999 9999999999999987544
No 8
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.48 E-value=7.5e-08 Score=84.38 Aligned_cols=33 Identities=42% Similarity=1.033 Sum_probs=29.0
Q ss_pred cccccccCCCCCCCCCCCccCccCccccCCCCc
Q 039387 82 TYHLQCLTPPLEDVPPGSWKCPSCSELEDLEKP 114 (322)
Q Consensus 82 ~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~~~~~ 114 (322)
+||++||+|||..+|+|+|+||.|.........
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 699999999999999999999999977664443
No 9
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.21 E-value=9.7e-07 Score=83.17 Aligned_cols=45 Identities=36% Similarity=1.071 Sum_probs=38.6
Q ss_pred cccccccccC--Cceeecc--cCC-CcccccccCCCCCCCCCCCccCccCccc
Q 039387 61 YYECLICCNG--GELLCCD--TCP-NTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 61 ~~~C~vC~~g--G~Ll~CD--~C~-~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
..+|+ |.++ |+|+-|| .|. .|||+.|++ |...|+|.|||+.|...
T Consensus 221 ~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 221 ELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred eeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 34454 8886 8999999 699 599999999 99999999999999753
No 10
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.20 E-value=5.3e-07 Score=86.30 Aligned_cols=48 Identities=38% Similarity=0.818 Sum_probs=39.0
Q ss_pred cccccccccC---CceeecccCCCcccccccCCCCCCCCCCCccCc-cCccccC
Q 039387 61 YYECLICCNG---GELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCP-SCSELED 110 (322)
Q Consensus 61 ~~~C~vC~~g---G~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp-~C~~~~~ 110 (322)
+..|.+|+++ .++++||.|+++||.+|++ |..+|.|.|.|. .|.....
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~~ 365 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREATL 365 (381)
T ss_pred cHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhcC
Confidence 3456666664 4799999999999999999 999999999998 4655444
No 11
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.77 E-value=3.2e-05 Score=78.90 Aligned_cols=49 Identities=45% Similarity=1.084 Sum_probs=41.5
Q ss_pred ccccccccCCc---eeecccCCCcccccccCCCCCCCCCC----CccCccCccccC
Q 039387 62 YECLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPG----SWKCPSCSELED 110 (322)
Q Consensus 62 ~~C~vC~~gG~---Ll~CD~C~~~fH~~CL~PPL~~~P~g----~W~Cp~C~~~~~ 110 (322)
+.|.+|...-+ |+.||+|...||+-||+|||..+|+. .|.|..|.....
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~es 600 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKNES 600 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccccC
Confidence 46999998653 88899999999999999999999985 599999954333
No 12
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.73 E-value=5.8e-06 Score=93.54 Aligned_cols=55 Identities=38% Similarity=0.936 Sum_probs=47.8
Q ss_pred CCccccccccccccCC---ceeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 56 GEDGHYYECLICCNGG---ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 56 ~~~~~~~~C~vC~~gG---~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.+..+...|.+|...+ .|++|+.|..+||++|+.|.+..+|.|+|+|+.|.....
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 3445567899998754 599999999999999999999999999999999987664
No 13
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=83.09 Aligned_cols=49 Identities=35% Similarity=0.929 Sum_probs=40.9
Q ss_pred cccccccccCC---ceeecccCCCcccccccCCCCCCCCCCCccCccCcccc
Q 039387 61 YYECLICCNGG---ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELE 109 (322)
Q Consensus 61 ~~~C~vC~~gG---~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~ 109 (322)
+..|..|+.+| .+++|+.|+-+||.||..|++..+|.|.|+|+.|....
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhh
Confidence 34555666544 59999999999999999999999999999999986543
No 14
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.63 E-value=2.3e-05 Score=79.68 Aligned_cols=50 Identities=32% Similarity=0.804 Sum_probs=40.7
Q ss_pred ccccccccCC-----ceeecccCCCcccccccCCCCC----CCCCCCccCccCccccCC
Q 039387 62 YECLICCNGG-----ELLCCDTCPNTYHLQCLTPPLE----DVPPGSWKCPSCSELEDL 111 (322)
Q Consensus 62 ~~C~vC~~gG-----~Ll~CD~C~~~fH~~CL~PPL~----~~P~g~W~Cp~C~~~~~~ 111 (322)
..|.+|+.|+ +||.|+.|..+||..|..|+.+ .-|.+.|||..|..+...
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 3499998654 6999999999999999999864 335678999999876553
No 15
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.24 E-value=0.00015 Score=79.72 Aligned_cols=50 Identities=38% Similarity=0.927 Sum_probs=46.0
Q ss_pred cccccccccccCCceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 59 GHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 59 ~~~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
...+.|.+|+..|.++||..||+.||+.|++||+.++|+..|.|--|...
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 44568999999999999999999999999999999999999999999743
No 16
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.23 E-value=0.00018 Score=79.53 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=41.6
Q ss_pred cccccccccccCC-----ceeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 59 GHYYECLICCNGG-----ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 59 ~~~~~C~vC~~gG-----~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
..+..|.+|..+. .+|+||.|..++|+.|++ ..-+|+|.|.|..|.....
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 3456799998752 489999999999999999 5578999999999976544
No 17
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.02 E-value=0.00025 Score=75.22 Aligned_cols=47 Identities=30% Similarity=0.764 Sum_probs=41.4
Q ss_pred ccccccccccC-----CceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 60 HYYECLICCNG-----GELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 60 ~~~~C~vC~~g-----G~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
++..|.+|..+ .+|++||.|....|+.|++ +.++|+|.|.|..|.-+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 56689999876 3699999999999999999 88999999999999644
No 18
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.64 E-value=0.00066 Score=71.70 Aligned_cols=45 Identities=33% Similarity=0.925 Sum_probs=38.5
Q ss_pred ccccccccC-C----ceeecc--cCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 62 YECLICCNG-G----ELLCCD--TCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 62 ~~C~vC~~g-G----~Ll~CD--~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
.-|.||.+. | .|+.|| .|.-+.|..|++ +-.+|.|.|||..|...
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQ 57 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhh
Confidence 349999863 2 599999 599999999999 77999999999999643
No 19
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.63 E-value=0.00034 Score=47.54 Aligned_cols=34 Identities=38% Similarity=1.011 Sum_probs=20.0
Q ss_pred CceeecccCCCcccccccCCCCCCCCCC-CccCccCc
Q 039387 71 GELLCCDTCPNTYHLQCLTPPLEDVPPG-SWKCPSCS 106 (322)
Q Consensus 71 G~Ll~CD~C~~~fH~~CL~PPL~~~P~g-~W~Cp~C~ 106 (322)
..||.|+.|.-..|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4689999999999999999 6677777 89998874
No 20
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.62 E-value=0.00074 Score=69.13 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=38.9
Q ss_pred ccccccccccCC-----ceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 60 HYYECLICCNGG-----ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 60 ~~~~C~vC~~gG-----~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
-++.|.+|.... -+++||+|..+.|..|.+ +.-+|+|.|+|..|.-.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~ 243 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhccc
Confidence 345688887643 389999999999999999 56889999999999654
No 21
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.59 E-value=0.013 Score=61.64 Aligned_cols=134 Identities=24% Similarity=0.390 Sum_probs=78.3
Q ss_pred cccccccccCCceeecccCCCcccccccCCCCC-CCCCCCccCccCccccCCCCccchhhhhhhhhhHHhhhhhhhhhcc
Q 039387 61 YYECLICCNGGELLCCDTCPNTYHLQCLTPPLE-DVPPGSWKCPSCSELEDLEKPISHLWKSSFKKSILASKLVMQVRHK 139 (322)
Q Consensus 61 ~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~-~~P~g~W~Cp~C~~~~~~~~~~~~~~~~~f~~~~l~~~L~~q~~~~ 139 (322)
...|.+|..+|++++|+.|+.+||..|.++++. ..+.+.|.|..|..........+..- ..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~sn~~~--~v---------------- 108 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKGREDSEKSNNSP--SV---------------- 108 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCcccccccccccCC--Cc----------------
Confidence 456999999999999999999999999999886 23335799988876543222221110 11
Q ss_pred cccccccccchhhhhhhhhhhhccCCCCCCcccCcCCCCCCCCcccccccCcccccccccccccccccccCCCCcccccc
Q 039387 140 ESSQSFFEKDDVECLAEKQTVSKRNTFGDNEECSTKDVDDGQGIKTSIKVHEPRICRGRHSNKEAMTESKDVDSKKSIRV 219 (322)
Q Consensus 140 ~~~q~ff~~~d~e~l~Ekq~~~~r~~~~~~~~~~l~~~d~~~g~et~tr~~e~r~~rrr~~~~~~~~~~~~~~p~k~~k~ 219 (322)
..+.++ ..+|+.... . +.+.+.. ..-+.+....++..+|+++..+...+++.+... ....
T Consensus 109 ------------nk~~~~--~~~r~r~~~-y--~~~~vr~--~~~E~~~~~~a~~~~~~~~~p~~~r~~n~lk~~-t~~~ 168 (613)
T KOG4299|consen 109 ------------NKLVRK--SGKRTRTWS-Y--TDGLVRS--EKTELKKVPHARQKDRFAEVPDSFRDKNSLKYL-TSLQ 168 (613)
T ss_pred ------------cchhhh--hcccccCcc-c--ccccccc--chhhhhcccccccccccccCCCcchhhhhhhhh-hccc
Confidence 011111 112222222 1 1111222 111223444555667777777777777777776 6677
Q ss_pred cCchhhhccCCCC
Q 039387 220 QDSSTATNAVHHE 232 (322)
Q Consensus 220 ~~~~e~~~~~~~~ 232 (322)
++..|......++
T Consensus 169 ~~~~~li~~~s~e 181 (613)
T KOG4299|consen 169 NDVQELIDISSTE 181 (613)
T ss_pred cccccccchhccc
Confidence 7766655555544
No 22
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=91.30 E-value=0.15 Score=56.20 Aligned_cols=52 Identities=46% Similarity=1.145 Sum_probs=44.0
Q ss_pred cccccccccccCCc--eeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 59 GHYYECLICCNGGE--LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 59 ~~~~~C~vC~~gG~--Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.....|..|..+.. ++.|+.|...||.+|+.|++..+++|+|.|+.|.....
T Consensus 153 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred ccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 34457888988763 44999999999999999999999999999999987733
No 23
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=89.72 E-value=0.045 Score=58.74 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=48.5
Q ss_pred CccccccccccccCCceeecccCCCcccccccCC-CCCCCCCCCccCccCccccC
Q 039387 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTP-PLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 57 ~~~~~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~P-PL~~~P~g~W~Cp~C~~~~~ 110 (322)
+..++..|..|...+.+++|+.|.+.||..|+.| |++..+.|.|.|+.|..+..
T Consensus 502 e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~y 556 (696)
T KOG0383|consen 502 EEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYY 556 (696)
T ss_pred hhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHH
Confidence 4456778999999999999999999999999999 99999999999999987544
No 24
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=89.14 E-value=0.17 Score=45.74 Aligned_cols=29 Identities=38% Similarity=0.958 Sum_probs=24.2
Q ss_pred ccccccc------CCceeecccCCCcccccccCCC
Q 039387 63 ECLICCN------GGELLCCDTCPNTYHLQCLTPP 91 (322)
Q Consensus 63 ~C~vC~~------gG~Ll~CD~C~~~fH~~CL~PP 91 (322)
.|.+|+. .|.||+|-+|..+||..||+|-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCc
Confidence 3778853 3679999999999999999974
No 25
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=88.11 E-value=0.14 Score=54.48 Aligned_cols=47 Identities=36% Similarity=0.944 Sum_probs=35.0
Q ss_pred cccccccccCC-----ceeecccCCCcccccccCCCCCCC-CCCCccCccCcc
Q 039387 61 YYECLICCNGG-----ELLCCDTCPNTYHLQCLTPPLEDV-PPGSWKCPSCSE 107 (322)
Q Consensus 61 ~~~C~vC~~gG-----~Ll~CD~C~~~fH~~CL~PPL~~~-P~g~W~Cp~C~~ 107 (322)
...|.+|+..| .|+.|..|..-||.+|+..-+... =.+.|.|+.|+.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34688887644 599999999999999999644332 124499999964
No 26
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=86.61 E-value=0.39 Score=50.00 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=37.0
Q ss_pred cccccccc-----CCceeecccCCCcccccccCCC-CCCCCC-------CCccCccCccccC
Q 039387 62 YECLICCN-----GGELLCCDTCPNTYHLQCLTPP-LEDVPP-------GSWKCPSCSELED 110 (322)
Q Consensus 62 ~~C~vC~~-----gG~Ll~CD~C~~~fH~~CL~PP-L~~~P~-------g~W~Cp~C~~~~~ 110 (322)
..|.||-+ .|++|.||.|+...|-.|++-- -.++|. ..|||.-|..+-.
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 37999975 3789999999999999999842 123333 3699999876544
No 27
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=82.56 E-value=0.19 Score=56.38 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=43.4
Q ss_pred ccccccccccCCceeeccc-CCCcccc-cccCC--CCCCCCCCCccCccCccccCC
Q 039387 60 HYYECLICCNGGELLCCDT-CPNTYHL-QCLTP--PLEDVPPGSWKCPSCSELEDL 111 (322)
Q Consensus 60 ~~~~C~vC~~gG~Ll~CD~-C~~~fH~-~CL~P--PL~~~P~g~W~Cp~C~~~~~~ 111 (322)
+...|.+|+..+-+|+|++ |+..||+ .||+- --..+++|-|+|+.|..++..
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~ 482 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMG 482 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhcc
Confidence 3456999999999999997 9999999 99993 235788899999999876653
No 28
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.34 E-value=0.66 Score=34.52 Aligned_cols=29 Identities=28% Similarity=0.922 Sum_probs=25.0
Q ss_pred cccccccc----CCceeecccCCCcccccccCC
Q 039387 62 YECLICCN----GGELLCCDTCPNTYHLQCLTP 90 (322)
Q Consensus 62 ~~C~vC~~----gG~Ll~CD~C~~~fH~~CL~P 90 (322)
..|.+|+. +++++.|..|...||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35999986 578999999999999999974
No 29
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.20 E-value=0.78 Score=44.85 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=36.6
Q ss_pred ccccccccC---------CceeecccCCCcccccccCCCCC---CCCCCCccCccCccccCC
Q 039387 62 YECLICCNG---------GELLCCDTCPNTYHLQCLTPPLE---DVPPGSWKCPSCSELEDL 111 (322)
Q Consensus 62 ~~C~vC~~g---------G~Ll~CD~C~~~fH~~CL~PPL~---~~P~g~W~Cp~C~~~~~~ 111 (322)
..|..|-.+ ..+|+|..|..+||.+|+.-+.. .+-...|.|-.|.-...-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC 320 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRIC 320 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhcc
Confidence 468888654 24999999999999999984422 233458999998655443
No 30
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=78.00 E-value=2.3 Score=43.92 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=33.8
Q ss_pred CccccccccccccCCceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 57 ~~~~~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
...+..+|++|..||.+++|+.|..++|-.|..- ..|.+.|.|..|...
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~---~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA---QLEKCSKRCTDCRAF 133 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc---cCcccccCCcceeee
Confidence 3456678999999999999997776666666642 344555665555443
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=77.36 E-value=0.81 Score=37.00 Aligned_cols=44 Identities=25% Similarity=0.628 Sum_probs=28.7
Q ss_pred ccccccCCc---eeecccCCCcccccccCCCCCCCCCCCccCccCcccc
Q 039387 64 CLICCNGGE---LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELE 109 (322)
Q Consensus 64 C~vC~~gG~---Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~ 109 (322)
|..|.-+|+ ++.+ .|...||+.|+.--|..- ...=.||-|+...
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQPW 81 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCee
Confidence 334444453 4433 599999999998776653 2233799998653
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=77.34 E-value=0.25 Score=38.00 Aligned_cols=47 Identities=34% Similarity=0.694 Sum_probs=19.2
Q ss_pred ccccccccC----Cc--eeecc--cCCCcccccccCCCCCCCCC-------CCccCccCccc
Q 039387 62 YECLICCNG----GE--LLCCD--TCPNTYHLQCLTPPLEDVPP-------GSWKCPSCSEL 108 (322)
Q Consensus 62 ~~C~vC~~g----G~--Ll~CD--~C~~~fH~~CL~PPL~~~P~-------g~W~Cp~C~~~ 108 (322)
..|.+|... ++ .+.|+ .|...||..||--.+...+. -.+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 458888752 32 58898 89999999999643321111 23569999764
No 33
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.68 E-value=2.3 Score=44.76 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=41.7
Q ss_pred CccccccccccccCCceeecccCCCcccccccCCCCCCCCC--CCccCccCccccC
Q 039387 57 EDGHYYECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPP--GSWKCPSCSELED 110 (322)
Q Consensus 57 ~~~~~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~~P~--g~W~Cp~C~~~~~ 110 (322)
....+.+|+-|+..|..+.|+.|-++||..|+.|--. .+. .-|-|+.|..-..
T Consensus 56 ~~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q-~r~~s~p~~~p~p~s~k~ 110 (588)
T KOG3612|consen 56 SSNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQ-KRNYSVPSDKPQPYSFKV 110 (588)
T ss_pred ccCCCcccccccCCcceeeeehhhccccccccCcchh-hccccccccCCcccccCC
Confidence 3455678999999999999999999999999987432 222 2599999875544
No 34
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=75.28 E-value=1.5 Score=34.34 Aligned_cols=30 Identities=27% Similarity=0.817 Sum_probs=25.8
Q ss_pred cccccccccC-Cceeecc--cCCCcccccccCC
Q 039387 61 YYECLICCNG-GELLCCD--TCPNTYHLQCLTP 90 (322)
Q Consensus 61 ~~~C~vC~~g-G~Ll~CD--~C~~~fH~~CL~P 90 (322)
...|.+|+.. |-.+-|. .|...||+.|..-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 3469999998 9889997 6999999999863
No 35
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.97 E-value=1.8 Score=35.28 Aligned_cols=30 Identities=30% Similarity=0.866 Sum_probs=25.7
Q ss_pred cccccccccc-CCceeeccc--CCCcccccccC
Q 039387 60 HYYECLICCN-GGELLCCDT--CPNTYHLQCLT 89 (322)
Q Consensus 60 ~~~~C~vC~~-gG~Ll~CD~--C~~~fH~~CL~ 89 (322)
....|.+|+. .|-.+-|.. |...||..|..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 3467999998 578999987 99999999986
No 36
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=67.73 E-value=1.7 Score=42.30 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=38.4
Q ss_pred ccccccccccC----------CceeecccCCCcccccccCCCC---CCCCCCCccCccCccccCC
Q 039387 60 HYYECLICCNG----------GELLCCDTCPNTYHLQCLTPPL---EDVPPGSWKCPSCSELEDL 111 (322)
Q Consensus 60 ~~~~C~vC~~g----------G~Ll~CD~C~~~fH~~CL~PPL---~~~P~g~W~Cp~C~~~~~~ 111 (322)
...+|..|-++ .+|+.|..|+++=|..||.-.. ..+-...|.|-.|.....-
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csic 287 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSIC 287 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccc
Confidence 34567777543 3699999999999999997321 2455679999999766553
No 37
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=62.97 E-value=0.64 Score=31.92 Aligned_cols=39 Identities=33% Similarity=0.798 Sum_probs=26.0
Q ss_pred cccccccC---Cc-eeecccCCCcccccccCCCCCCCCCCCccCccCc
Q 039387 63 ECLICCNG---GE-LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106 (322)
Q Consensus 63 ~C~vC~~g---G~-Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~ 106 (322)
.|.+|... ++ ++... |.-.||..|+...+... -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 47888753 33 44344 99999999998765442 3788884
No 38
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=5.9 Score=39.64 Aligned_cols=47 Identities=28% Similarity=0.628 Sum_probs=35.4
Q ss_pred cccccccc---CCceeecccCCCcccccccCCCCCCCCCCCccCccCccccCC
Q 039387 62 YECLICCN---GGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELEDL 111 (322)
Q Consensus 62 ~~C~vC~~---gG~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~~ 111 (322)
+.|.+|-. .|+.|-==-|.-.||..|.+|.|..- .=+||-|+..-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCC
Confidence 58999986 36644445788999999999987643 3479999876553
No 39
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.99 E-value=6.8 Score=35.92 Aligned_cols=37 Identities=27% Similarity=0.854 Sum_probs=27.7
Q ss_pred cccccccCC--------ceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 63 ECLICCNGG--------ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 63 ~C~vC~~gG--------~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
.|.+|...+ ....|..|...||..|... . .||.|...
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~-------~CpkC~R~ 198 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--K-------SCPKCARR 198 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--C-------CCCCcHhH
Confidence 466666532 4788999999999999982 1 29999754
No 40
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=53.94 E-value=3.1 Score=27.00 Aligned_cols=41 Identities=27% Similarity=0.606 Sum_probs=27.9
Q ss_pred ccccccCC-ceeecccCCCcccccccCCCCCCCCCCCccCccCcc
Q 039387 64 CLICCNGG-ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107 (322)
Q Consensus 64 C~vC~~gG-~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~ 107 (322)
|.+|...- +.+....|.-.||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 66776543 34444568889999999864443 4567998865
No 41
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=47.58 E-value=11 Score=27.14 Aligned_cols=16 Identities=44% Similarity=1.242 Sum_probs=8.9
Q ss_pred CCCCCCCccCccCcccc
Q 039387 93 EDVPPGSWKCPSCSELE 109 (322)
Q Consensus 93 ~~~P~g~W~Cp~C~~~~ 109 (322)
..+| .+|.||.|...+
T Consensus 29 ~~Lp-~~w~CP~C~a~K 44 (47)
T PF00301_consen 29 EDLP-DDWVCPVCGAPK 44 (47)
T ss_dssp GGS--TT-B-TTTSSBG
T ss_pred HHCC-CCCcCcCCCCcc
Confidence 3444 579999997653
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=46.39 E-value=3.6 Score=25.65 Aligned_cols=39 Identities=28% Similarity=0.617 Sum_probs=23.3
Q ss_pred ccccccCCceeecccCCCcccccccCCCCCCCCCCCccCccC
Q 039387 64 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 105 (322)
Q Consensus 64 C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C 105 (322)
|.+|........-..|.-.||..|+..-+. .+.-.||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 456665544444456888888888875433 233446655
No 43
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=44.08 E-value=15 Score=26.79 Aligned_cols=16 Identities=44% Similarity=1.199 Sum_probs=11.2
Q ss_pred CCCCCCCccCccCcccc
Q 039387 93 EDVPPGSWKCPSCSELE 109 (322)
Q Consensus 93 ~~~P~g~W~Cp~C~~~~ 109 (322)
..+| .+|.||.|...+
T Consensus 29 ~~Lp-~~w~CP~C~a~K 44 (50)
T cd00730 29 EDLP-DDWVCPVCGAGK 44 (50)
T ss_pred hHCC-CCCCCCCCCCcH
Confidence 3455 389999997643
No 44
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=42.98 E-value=12 Score=37.38 Aligned_cols=44 Identities=27% Similarity=0.649 Sum_probs=35.3
Q ss_pred cccCCceeecccCCCcccccc--cCCCCCCCCC-CCccCccCccccC
Q 039387 67 CCNGGELLCCDTCPNTYHLQC--LTPPLEDVPP-GSWKCPSCSELED 110 (322)
Q Consensus 67 C~~gG~Ll~CD~C~~~fH~~C--L~PPL~~~P~-g~W~Cp~C~~~~~ 110 (322)
|...+.++-|+.|..+||-.| ++.+-...|. -.|+|..|.....
T Consensus 69 ~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 69 CDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred cCchhhhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 444457899999999999999 9987766665 4799999987654
No 45
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=39.80 E-value=18 Score=28.55 Aligned_cols=29 Identities=17% Similarity=0.566 Sum_probs=19.5
Q ss_pred cccccccccC--CceeecccCCCcccccccC
Q 039387 61 YYECLICCNG--GELLCCDTCPNTYHLQCLT 89 (322)
Q Consensus 61 ~~~C~vC~~g--G~Ll~CD~C~~~fH~~CL~ 89 (322)
...|.+|++. .....---|+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3469999974 3333333556899999975
No 46
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=38.24 E-value=27 Score=31.81 Aligned_cols=20 Identities=35% Similarity=0.962 Sum_probs=16.8
Q ss_pred eeecccCCCcccccccCCCC
Q 039387 73 LLCCDTCPNTYHLQCLTPPL 92 (322)
Q Consensus 73 Ll~CD~C~~~fH~~CL~PPL 92 (322)
|.-|..|-++||+.-|.|+-
T Consensus 124 LFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred EEecCCccceeehhhCCCCc
Confidence 55599999999999998753
No 47
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.66 E-value=14 Score=40.91 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=34.9
Q ss_pred cccccccccccCCceeecc-cCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 59 GHYYECLICCNGGELLCCD-TCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 59 ~~~~~C~vC~~gG~Ll~CD-~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.....|..|...=++-.-. .|..+||..|+. +++-.||.|..+..
T Consensus 838 ~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLPELR 883 (933)
T ss_pred eeeeeecccCCccccceeeeecccHHHHHhhc-------cCcccCCccchhhh
Confidence 3445799999876766655 799999999998 56678999987433
No 48
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=36.56 E-value=8.2 Score=29.69 Aligned_cols=26 Identities=27% Similarity=0.824 Sum_probs=19.1
Q ss_pred ccCCCcccccccCCCCCCCCCCCccCccCc
Q 039387 77 DTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106 (322)
Q Consensus 77 D~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~ 106 (322)
..|+-.||..|+..-|... ..||.|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 4699999999998765433 3899885
No 49
>COG1773 Rubredoxin [Energy production and conversion]
Probab=35.58 E-value=24 Score=26.36 Aligned_cols=15 Identities=47% Similarity=1.378 Sum_probs=11.5
Q ss_pred CCCCCCCCccCccCcc
Q 039387 92 LEDVPPGSWKCPSCSE 107 (322)
Q Consensus 92 L~~~P~g~W~Cp~C~~ 107 (322)
...+| .+|.||.|-.
T Consensus 30 fedlP-d~w~CP~Cg~ 44 (55)
T COG1773 30 FEDLP-DDWVCPECGV 44 (55)
T ss_pred hhhCC-CccCCCCCCC
Confidence 45555 6899999986
No 50
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=35.32 E-value=8.7 Score=26.88 Aligned_cols=40 Identities=25% Similarity=0.580 Sum_probs=19.0
Q ss_pred ccccccCC-ceeecc--cCCCcccccccCCCCCCCCCCCccCccC
Q 039387 64 CLICCNGG-ELLCCD--TCPNTYHLQCLTPPLEDVPPGSWKCPSC 105 (322)
Q Consensus 64 C~vC~~gG-~Ll~CD--~C~~~fH~~CL~PPL~~~P~g~W~Cp~C 105 (322)
|.+|..-. .-+.|. +|+..+|.+|+.--+...... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 55666532 335687 699999999998544443322 68877
No 51
>PHA02929 N1R/p28-like protein; Provisional
Probab=32.78 E-value=18 Score=34.46 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=32.1
Q ss_pred ccccccccccCC---c-----eeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 60 HYYECLICCNGG---E-----LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 60 ~~~~C~vC~~gG---~-----Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.+..|.+|...- + +..=..|...||..|+...+...+ .||.|+..-.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEee
Confidence 346799998741 1 122347889999999987655432 6999986543
No 52
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=32.58 E-value=29 Score=23.48 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=19.4
Q ss_pred ecccCCCcccccccCCCCCCCCCCCccCccCcc
Q 039387 75 CCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSE 107 (322)
Q Consensus 75 ~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~ 107 (322)
.|..|.+.||..-.. |.-+..|..|-.
T Consensus 3 ~C~~Cg~~Yh~~~~p------P~~~~~Cd~cg~ 29 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNP------PKVEGVCDNCGG 29 (36)
T ss_dssp EETTTTEEEETTTB--------SSTTBCTTTTE
T ss_pred CcCCCCCccccccCC------CCCCCccCCCCC
Confidence 688999999965544 445678988865
No 53
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=31.59 E-value=18 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=11.1
Q ss_pred cccccccCC---ceeecccCCCcccccc
Q 039387 63 ECLICCNGG---ELLCCDTCPNTYHLQC 87 (322)
Q Consensus 63 ~C~vC~~gG---~Ll~CD~C~~~fH~~C 87 (322)
.|.+|+..+ ..-.|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 488888753 4777999999999887
No 54
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=10 Score=38.72 Aligned_cols=43 Identities=42% Similarity=0.834 Sum_probs=30.9
Q ss_pred cccccccCC----ceeecccCCCcccccccCCCCCCCCCCCccCccCc
Q 039387 63 ECLICCNGG----ELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 106 (322)
Q Consensus 63 ~C~vC~~gG----~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~ 106 (322)
.|.+|.++- ++---..|+..||..||.-....-|.. --||-|+
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ 52 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQ 52 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc-CCCCcee
Confidence 599997642 455566799999999998654544522 2599997
No 55
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=29.95 E-value=42 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.561 Sum_probs=22.5
Q ss_pred ccccccC--CceeecccCCCccc-ccccCCCCCCCCCCCccCccCcc
Q 039387 64 CLICCNG--GELLCCDTCPNTYH-LQCLTPPLEDVPPGSWKCPSCSE 107 (322)
Q Consensus 64 C~vC~~g--G~Ll~CD~C~~~fH-~~CL~PPL~~~P~g~W~Cp~C~~ 107 (322)
|..|+.. ....+|..|+.... ..|-.- -..+|.+.=||+.|-.
T Consensus 4 Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~C-G~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 4 CPQCQFENPNNNRFCQKCGTSLTHKPCPQC-GTEVPVDEAHCPNCGA 49 (645)
T ss_pred CCCCCCcCCCCCccccccCCCCCCCcCCCC-CCCCCcccccccccCC
Confidence 4445432 23445555554322 334433 2346777779999943
No 56
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=29.59 E-value=37 Score=23.75 Aligned_cols=28 Identities=29% Similarity=0.646 Sum_probs=21.5
Q ss_pred cccccccc-----CCceeecccCCCcccccccC
Q 039387 62 YECLICCN-----GGELLCCDTCPNTYHLQCLT 89 (322)
Q Consensus 62 ~~C~vC~~-----gG~Ll~CD~C~~~fH~~CL~ 89 (322)
..|.+|+. +...+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 36888875 34688999999999999997
No 57
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=28.60 E-value=23 Score=22.43 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=11.4
Q ss_pred CCCccCccCccccCC
Q 039387 97 PGSWKCPSCSELEDL 111 (322)
Q Consensus 97 ~g~W~Cp~C~~~~~~ 111 (322)
.|+|.|+.|......
T Consensus 2 ~g~W~C~~C~~~N~~ 16 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPA 16 (30)
T ss_dssp SSSEEETTTTEEEES
T ss_pred CcCccCCCCcCCchH
Confidence 589999999765443
No 58
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=28.41 E-value=32 Score=37.09 Aligned_cols=38 Identities=29% Similarity=0.656 Sum_probs=23.4
Q ss_pred ccccccccCCceeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 62 YECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 62 ~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
..|..|++.|..+-|+.|+.-++ +..+..|+.|..+..
T Consensus 69 ~~c~~c~G~gkv~~c~~cG~~~~-----------~~~~~lc~~c~~~~~ 106 (715)
T COG1107 69 DTCPECGGTGKVLTCDICGDIIV-----------PWEEGLCPECRRKPK 106 (715)
T ss_pred eecccCCCceeEEeeccccceec-----------CcccccChhHhhCCc
Confidence 44666666666777777766544 111227999987655
No 59
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=27.23 E-value=29 Score=21.01 Aligned_cols=13 Identities=46% Similarity=1.336 Sum_probs=9.7
Q ss_pred CCccCccCccccC
Q 039387 98 GSWKCPSCSELED 110 (322)
Q Consensus 98 g~W~Cp~C~~~~~ 110 (322)
|+|.|+.|.....
T Consensus 1 g~W~C~~C~~~N~ 13 (26)
T smart00547 1 GDWECPACTFLNF 13 (26)
T ss_pred CcccCCCCCCcCh
Confidence 6899999965433
No 60
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.66 E-value=25 Score=29.16 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=26.0
Q ss_pred ccccccccC--Cceeec------ccC---CCcccccccCCCC-----CCCCCCCccCccCcc
Q 039387 62 YECLICCNG--GELLCC------DTC---PNTYHLQCLTPPL-----EDVPPGSWKCPSCSE 107 (322)
Q Consensus 62 ~~C~vC~~g--G~Ll~C------D~C---~~~fH~~CL~PPL-----~~~P~g~W~Cp~C~~ 107 (322)
..|..|.+- +....| ..| ...|=..||.-.. +.+..+.|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 346677652 233445 455 5555555654221 234567899999964
No 61
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=26.36 E-value=26 Score=32.46 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=32.9
Q ss_pred ccccccccccCCceeecccCCCcccccccCCCCCC------------CCCCCccCccCccccC
Q 039387 60 HYYECLICCNGGELLCCDTCPNTYHLQCLTPPLED------------VPPGSWKCPSCSELED 110 (322)
Q Consensus 60 ~~~~C~vC~~gG~Ll~CD~C~~~fH~~CL~PPL~~------------~P~g~W~Cp~C~~~~~ 110 (322)
.+..|.+|...-.-.....|.-.|...|+...+.. ...+...||.|...-.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45679999875433333578888999998643211 0224568999987544
No 62
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.12 E-value=18 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.760 Sum_probs=23.0
Q ss_pred eeecccCCCcccccccCCCCCCCCCCCccCccCccccC
Q 039387 73 LLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 73 Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
..-|+.|...||-.|+.- ... .||.|...+.
T Consensus 531 ~~rC~~C~avfH~~C~~r--~s~-----~CPrC~R~q~ 561 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRR--KSP-----CCPRCERRQK 561 (580)
T ss_pred ceeHHHHHHHHHHHHHhc--cCC-----CCCchHHHHH
Confidence 466889999999999983 221 2999976544
No 63
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.43 E-value=46 Score=36.10 Aligned_cols=42 Identities=19% Similarity=0.455 Sum_probs=24.8
Q ss_pred ccccCCceeecccCC--Ccccc-----cccCCCCCCCCCCCccCccCccccC
Q 039387 66 ICCNGGELLCCDTCP--NTYHL-----QCLTPPLEDVPPGSWKCPSCSELED 110 (322)
Q Consensus 66 vC~~gG~Ll~CD~C~--~~fH~-----~CL~PPL~~~P~g~W~Cp~C~~~~~ 110 (322)
.|...|..+.|..|+ -.||. .|.-=.... ..|.||.|-....
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~---~p~~Cp~Cgs~~l 433 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAA---PDWRCPRCGSDRL 433 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCC---cCccCCCCcCCcc
Confidence 344445667888887 46663 254322222 2599999976543
No 64
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.11 E-value=42 Score=34.90 Aligned_cols=41 Identities=34% Similarity=0.843 Sum_probs=23.2
Q ss_pred ccccCCceeecccCC--Ccccc-----cccCCC-CCCCCCCCccCccCcccc
Q 039387 66 ICCNGGELLCCDTCP--NTYHL-----QCLTPP-LEDVPPGSWKCPSCSELE 109 (322)
Q Consensus 66 vC~~gG~Ll~CD~C~--~~fH~-----~CL~PP-L~~~P~g~W~Cp~C~~~~ 109 (322)
.|...|..+.|..|+ -.||. .|.-=. ...+ .|.||.|....
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~---~~~Cp~C~s~~ 263 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI---PKTCPQCGSED 263 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCC---CCCCCCCCCCe
Confidence 344445566788887 45663 344311 1122 48999997653
No 65
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.54 E-value=39 Score=36.98 Aligned_cols=56 Identities=21% Similarity=0.570 Sum_probs=33.8
Q ss_pred cccCCccccccccccccCCc--------eeecc--cCCCcccccccCCC-CC-----CCCCCCccCccCccc
Q 039387 53 YTIGEDGHYYECLICCNGGE--------LLCCD--TCPNTYHLQCLTPP-LE-----DVPPGSWKCPSCSEL 108 (322)
Q Consensus 53 ~~~~~~~~~~~C~vC~~gG~--------Ll~CD--~C~~~fH~~CL~PP-L~-----~~P~g~W~Cp~C~~~ 108 (322)
...+.|.....|++|...|. -+-|. +|-++||..|..-. |- ..-+.-=||-.|...
T Consensus 109 q~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 109 QDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH 180 (900)
T ss_pred ccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence 34445555567999987652 34454 78899999998632 11 111123577777543
No 66
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.24 E-value=65 Score=20.54 Aligned_cols=26 Identities=31% Similarity=0.737 Sum_probs=19.6
Q ss_pred cccccccC--Cc-eeecccCCCccccccc
Q 039387 63 ECLICCNG--GE-LLCCDTCPNTYHLQCL 88 (322)
Q Consensus 63 ~C~vC~~g--G~-Ll~CD~C~~~fH~~CL 88 (322)
.|.+|+.. |. .-.|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58888864 44 6679999988888773
No 67
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.24 E-value=58 Score=33.99 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=35.6
Q ss_pred ccccccccccC-----CceeecccCCCcccccccCCCCCCCCCCCccCccCccc
Q 039387 60 HYYECLICCNG-----GELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSEL 108 (322)
Q Consensus 60 ~~~~C~vC~~g-----G~Ll~CD~C~~~fH~~CL~PPL~~~P~g~W~Cp~C~~~ 108 (322)
....|.+|... .++..|+.|.++||..|..|.... .+.|.|..|...
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFP 133 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCcccccccccc
Confidence 34568888752 358889999999999999986443 368899988643
No 68
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=21.15 E-value=54 Score=24.29 Aligned_cols=29 Identities=38% Similarity=0.740 Sum_probs=23.8
Q ss_pred ccccccc--------CCceeecccCCCcccccccCCC
Q 039387 63 ECLICCN--------GGELLCCDTCPNTYHLQCLTPP 91 (322)
Q Consensus 63 ~C~vC~~--------gG~Ll~CD~C~~~fH~~CL~PP 91 (322)
.|..|+. .|+++-|..|...|-...++|.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~ 40 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPL 40 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCC
Confidence 4777774 2789999999999999999883
Done!