BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039388
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
Query: 5 LLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT--------ENGVSN------NLYD 50
L +E GP DL + N S + + ++F+DQ +GVSN ++Y+
Sbjct: 62 LFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN 121
Query: 51 FLQAFFVEHPCY--DKNDFYITGESYAGHYIPAFASPHYSTRKK 92
FL+ FF + P Y DF+I GESYAGHYIP FAS S + +
Sbjct: 122 FLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDR 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 45/155 (29%)
Query: 87 YSTRKKYEG-EYCYD-LSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFY------ 138
Y RK EG CY L ++ +LN+ VK+A+GA ++ CN +++ +F
Sbjct: 256 YDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKP 315
Query: 139 -------LLSAE------------------NSKWVHAVEWSGRKDFEVALTAPF--KVDG 171
LL+ + N W + W ++F + +
Sbjct: 316 YHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITD 375
Query: 172 AKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVP 206
AG++KSY+ T LR++ N GHMVP
Sbjct: 376 EVAGEVKSYKHFTYLRVF----------NGGHMVP 400
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 5 LLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT--------ENGVSN------NLYD 50
L + GP DL + N S + + ++F+DQ +GVSN ++Y+
Sbjct: 62 LFFALGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN 121
Query: 51 FLQAFFVEHPCY--DKNDFYITGESYAGHYIPAFASPHYSTRKK 92
FL+ FF + P Y DF+I G SYAGHYIP FAS S + +
Sbjct: 122 FLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDR 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 45/155 (29%)
Query: 87 YSTRKKYEG-EYCYD-LSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFY------ 138
Y RK EG CY L ++ +LN+ VK+A+GA ++ CN +++ +F
Sbjct: 256 YDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKP 315
Query: 139 -------LLSAE------------------NSKWVHAVEWSGRKDFEVALTAPF--KVDG 171
LL+ + N W + W ++F + +
Sbjct: 316 YHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITD 375
Query: 172 AKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVP 206
AG++KSY+ T LR++ N GHMVP
Sbjct: 376 EVAGEVKSYKHFTYLRVF----------NGGHMVP 400
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 19 SLVWNDCSSDKASNLMFVDQLT-----------------ENGVSNNLYDFLQAFFVEHPC 61
LV N+ +K +N++F+D +N +++ Y FL +F P
Sbjct: 83 GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPH 142
Query: 62 YDKNDFYITGESYAGHYIP 80
Y DFYI GESYAGHY+P
Sbjct: 143 YKYRDFYIAGESYAGHYVP 161
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 19 SLVWNDCSSDKASNLMFVDQLT-----------------ENGVSNNLYDFLQAFFVEHPC 61
LV N+ +K +N++F+D +N +++ Y FL +F P
Sbjct: 82 GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPH 141
Query: 62 YDKNDFYITGESYAGHYIP 80
Y DFYI GESYAGHY+P
Sbjct: 142 YKYRDFYIAGESYAGHYVP 160
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 19 SLVWNDCSSDKASNLMFVDQLT-----------------ENGVSNNLYDFLQAFFVEHPC 61
LV N+ +K +N++F+D +N +++ Y FL +F P
Sbjct: 87 GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPH 146
Query: 62 YDKNDFYITGESYAGHYIP 80
Y DFYI GESYAGHY+P
Sbjct: 147 YKYRDFYIAGESYAGHYVP 165
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 17/79 (21%)
Query: 19 SLVWNDCSSDKASNLMFVDQLT-----------------ENGVSNNLYDFLQAFFVEHPC 61
LV N+ +K +N++F+D +N +++ Y FL +F P
Sbjct: 87 GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPH 146
Query: 62 YDKNDFYITGESYAGHYIP 80
Y DFYI GESYAGHY+P
Sbjct: 147 YKYRDFYIAGESYAGHYVP 165
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 6 LYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENG---------------------- 43
L E+GP +D L N+ S +L+F+DQ T G
Sbjct: 86 LVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLE 145
Query: 44 -VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRK--KYEGEYCYD 100
V+ + DFL+ +F P ++GESYAG YIP FA+ + K K +G+ YD
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGD-TYD 204
Query: 101 LSIM 104
L +
Sbjct: 205 LKAL 208
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 12 VHTANDLSLVWNDCSSDKASNLMFVDQ----------------LTENGVSNNLYDFLQAF 55
VHT N SL+ N+ + +KA+N++F + + ++ ++ + Y FL +
Sbjct: 82 VHT-NGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKW 140
Query: 56 FVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTR 90
F P Y+ +FYI GES GH+IP + Y R
Sbjct: 141 FERFPHYNYREFYIAGES--GHFIPQLSQVVYRNR 173
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 5 LLYENGPVHTAND-LSLVWNDCSSDKASNLMFVDQLTENG---------------VSNNL 48
LL E+GP D ++L +N S + +N+++++ G V+ +
Sbjct: 66 LLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSN 125
Query: 49 YDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83
++ LQ FF P Y N ++TGESYAG YIP A
Sbjct: 126 FEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA 160
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 5 LLYENGPVHTAND-LSLVWNDCSSDKASNLMFVDQLTENG---------------VSNNL 48
LL E+GP D ++L +N S + +N+++++ G V+ +
Sbjct: 68 LLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSN 127
Query: 49 YDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83
++ LQ FF P Y N ++TGESYAG YIP A
Sbjct: 128 FEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA 162
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 11 PVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDF 51
P HT ++ W C K +++F D LT VS + Y F
Sbjct: 148 PGHTEGGITWTWQSCEQGKCKDVVFADSLT--AVSADSYRF 186
>pdb|4AX0|B Chain B, Q157a Mutant. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 2 ELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPC 61
L L P HT S W C D +++ D LT +S++++ + HP
Sbjct: 171 PLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLT--AISDDVFRYSD--DAAHPG 226
Query: 62 Y 62
Y
Sbjct: 227 Y 227
>pdb|4AWY|B Chain B, Crystal Structure Of The Mobile Metallo-Beta-Lactamase
Aim-1 From Pseudomonas Aeruginosa: Insights Into
Antibiotic Binding And The Role Of Gln157
pdb|4AWZ|A Chain A, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|B Chain B, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|C Chain C, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 2 ELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPC 61
L L P HT S W C D +++ D LT +S++++ + + HP
Sbjct: 171 PLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLT--AISDDVFRY--SDDAAHPG 226
Query: 62 Y 62
Y
Sbjct: 227 Y 227
>pdb|4AX1|B Chain B, Q157n Mutant. Crystal Structure Of The Mobile
Metallo-Beta- Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 2 ELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPC 61
L L P HT S W C D +++ D LT +S++++ + HP
Sbjct: 171 PLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLT--AISDDVFRYSD--DAAHPG 226
Query: 62 Y 62
Y
Sbjct: 227 Y 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,365,473
Number of Sequences: 62578
Number of extensions: 259077
Number of successful extensions: 502
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 16
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)