Query 039388
Match_columns 208
No_of_seqs 180 out of 1449
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 3.7E-60 8.1E-65 431.8 12.0 193 1-208 87-432 (454)
2 PF00450 Peptidase_S10: Serine 100.0 1.8E-58 3.8E-63 414.5 5.5 195 1-208 54-400 (415)
3 PTZ00472 serine carboxypeptida 100.0 6.6E-56 1.4E-60 407.8 13.1 198 1-208 91-443 (462)
4 PLN02209 serine carboxypeptida 100.0 1.6E-53 3.6E-58 389.1 12.6 191 1-206 82-418 (437)
5 PLN03016 sinapoylglucose-malat 100.0 2.1E-53 4.6E-58 388.1 10.9 192 1-207 80-415 (433)
6 PLN02213 sinapoylglucose-malat 100.0 8.4E-47 1.8E-51 332.8 9.8 163 30-207 1-301 (319)
7 COG2939 Carboxypeptidase C (ca 100.0 2.5E-41 5.4E-46 307.4 4.9 198 1-208 115-475 (498)
8 KOG1283 Serine carboxypeptidas 100.0 7E-38 1.5E-42 271.0 7.2 192 2-208 47-398 (414)
9 PF12697 Abhydrolase_6: Alpha/ 88.3 0.34 7.3E-06 37.8 2.2 53 29-85 23-86 (228)
10 PRK05077 frsA fermentation/res 85.4 0.62 1.3E-05 42.7 2.5 54 31-85 223-285 (414)
11 TIGR03611 RutD pyrimidine util 85.3 0.51 1.1E-05 38.1 1.7 53 29-85 38-100 (257)
12 COG1506 DAP2 Dipeptidyl aminop 79.0 1.7 3.8E-05 41.9 3.0 54 31-85 424-493 (620)
13 TIGR03695 menH_SHCHC 2-succiny 78.5 1.7 3.8E-05 34.2 2.5 52 30-85 27-90 (251)
14 PF06500 DUF1100: Alpha/beta h 78.2 0.75 1.6E-05 42.4 0.3 55 30-85 218-281 (411)
15 PRK10673 acyl-CoA esterase; Pr 77.8 1.2 2.7E-05 36.5 1.5 49 29-85 41-101 (255)
16 PLN02211 methyl indole-3-aceta 75.7 2.4 5.1E-05 36.2 2.7 61 22-85 29-107 (273)
17 PRK00870 haloalkane dehalogena 75.2 1.9 4.1E-05 36.9 1.9 51 31-85 74-135 (302)
18 TIGR01250 pro_imino_pep_2 prol 75.0 1.1 2.4E-05 36.6 0.4 52 30-85 53-116 (288)
19 PF00326 Peptidase_S9: Prolyl 74.6 1.3 2.9E-05 35.9 0.8 54 30-84 14-83 (213)
20 COG0596 MhpC Predicted hydrola 71.7 2.6 5.6E-05 32.8 1.8 51 31-85 51-108 (282)
21 KOG1455 Lysophospholipase [Lip 71.5 4.5 9.8E-05 35.9 3.4 38 47-84 108-148 (313)
22 PRK03204 haloalkane dehalogena 71.2 5.3 0.00012 34.1 3.8 50 30-83 60-119 (286)
23 PRK11071 esterase YqiA; Provis 69.5 3.3 7.1E-05 33.6 2.0 49 31-85 33-81 (190)
24 TIGR01249 pro_imino_pep_1 prol 69.5 3.2 6.9E-05 35.8 2.1 53 29-85 52-115 (306)
25 PF11288 DUF3089: Protein of u 67.8 5.1 0.00011 33.6 2.8 38 46-85 78-115 (207)
26 TIGR02240 PHA_depoly_arom poly 66.3 3.7 8E-05 34.5 1.7 53 29-85 50-111 (276)
27 PLN02578 hydrolase 65.7 3.3 7.2E-05 36.6 1.4 54 28-85 110-172 (354)
28 TIGR03056 bchO_mg_che_rel puta 65.3 4.7 0.0001 33.1 2.2 52 30-85 54-115 (278)
29 PRK10349 carboxylesterase BioH 62.6 3.2 6.9E-05 34.3 0.6 52 29-85 38-94 (256)
30 PLN02385 hydrolase; alpha/beta 62.2 6.5 0.00014 34.6 2.6 54 31-85 116-182 (349)
31 TIGR01738 bioH putative pimelo 61.8 4.2 9E-05 32.1 1.2 51 30-85 30-85 (245)
32 PLN02824 hydrolase, alpha/beta 61.3 4.7 0.0001 34.2 1.5 52 30-85 55-122 (294)
33 PF01764 Lipase_3: Lipase (cla 59.1 9.2 0.0002 28.6 2.6 37 47-86 49-85 (140)
34 PRK11126 2-succinyl-6-hydroxy- 58.1 8.3 0.00018 31.2 2.4 52 30-85 27-86 (242)
35 PRK14875 acetoin dehydrogenase 57.9 7.2 0.00016 34.0 2.1 51 31-85 158-217 (371)
36 KOG2564 Predicted acetyltransf 56.8 18 0.00038 32.2 4.2 35 45-83 130-164 (343)
37 cd00707 Pancreat_lipase_like P 56.4 8.8 0.00019 33.1 2.4 55 30-85 66-132 (275)
38 PRK03592 haloalkane dehalogena 53.5 8 0.00017 32.7 1.6 52 30-85 53-113 (295)
39 TIGR01607 PST-A Plasmodium sub 53.3 17 0.00036 32.1 3.6 20 64-83 141-160 (332)
40 PF05577 Peptidase_S28: Serine 52.0 13 0.00029 33.9 2.9 34 46-79 94-127 (434)
41 cd00741 Lipase Lipase. Lipase 50.6 12 0.00027 28.7 2.2 36 47-85 13-48 (153)
42 KOG4409 Predicted hydrolase/ac 49.4 17 0.00038 32.9 3.1 60 22-85 108-180 (365)
43 PF00561 Abhydrolase_1: alpha/ 48.7 9.2 0.0002 30.1 1.2 37 46-85 28-64 (230)
44 TIGR03343 biphenyl_bphD 2-hydr 47.8 13 0.00028 30.8 2.0 52 30-85 60-121 (282)
45 PLN00413 triacylglycerol lipas 47.1 23 0.0005 33.4 3.6 34 47-83 269-302 (479)
46 PF07849 DUF1641: Protein of u 47.1 6.6 0.00014 24.3 0.1 17 103-119 15-31 (42)
47 cd00519 Lipase_3 Lipase (class 46.9 18 0.0004 29.7 2.8 36 48-86 114-149 (229)
48 PHA02857 monoglyceride lipase; 46.2 15 0.00033 30.6 2.2 24 62-85 94-117 (276)
49 KOG3877 NADH:ubiquinone oxidor 46.2 23 0.00049 31.6 3.2 66 27-96 67-140 (393)
50 PLN02454 triacylglycerol lipas 45.4 21 0.00045 33.1 3.1 34 46-80 210-243 (414)
51 PLN02298 hydrolase, alpha/beta 45.1 19 0.00041 31.1 2.7 54 31-85 88-154 (330)
52 PLN02965 Probable pheophorbida 44.9 19 0.0004 29.9 2.5 53 31-85 31-92 (255)
53 TIGR03230 lipo_lipase lipoprot 43.4 20 0.00043 33.5 2.6 55 30-85 73-139 (442)
54 PRK10749 lysophospholipase L2; 43.2 14 0.0003 32.3 1.5 23 63-85 129-151 (330)
55 TIGR02427 protocat_pcaD 3-oxoa 42.9 16 0.00034 28.8 1.7 52 30-85 39-99 (251)
56 KOG2100 Dipeptidyl aminopeptid 42.5 15 0.00032 36.6 1.7 36 46-82 590-625 (755)
57 PLN02571 triacylglycerol lipas 42.4 25 0.00055 32.5 3.1 35 46-81 208-242 (413)
58 PLN02442 S-formylglutathione h 42.1 25 0.00055 30.1 3.0 36 47-85 128-163 (283)
59 PRK10566 esterase; Provisional 41.9 20 0.00043 29.4 2.2 32 54-85 96-127 (249)
60 PLN02934 triacylglycerol lipas 41.2 27 0.00059 33.2 3.2 34 47-83 306-339 (515)
61 PF11187 DUF2974: Protein of u 41.2 13 0.00029 31.2 1.1 53 26-85 52-104 (224)
62 PLN02162 triacylglycerol lipas 41.0 26 0.00055 33.1 3.0 30 49-81 265-294 (475)
63 PRK08775 homoserine O-acetyltr 40.6 18 0.00038 31.7 1.8 53 29-85 98-158 (343)
64 PLN02679 hydrolase, alpha/beta 39.6 20 0.00043 31.8 2.0 50 30-83 114-173 (360)
65 PF12695 Abhydrolase_5: Alpha/ 39.3 17 0.00036 26.8 1.2 53 31-85 27-81 (145)
66 PLN02408 phospholipase A1 38.2 36 0.00077 31.1 3.4 33 46-79 182-214 (365)
67 COG4425 Predicted membrane pro 36.6 45 0.00098 31.6 3.8 58 34-91 366-423 (588)
68 PRK05855 short chain dehydroge 36.2 37 0.0008 31.4 3.3 48 29-79 50-108 (582)
69 PLN02511 hydrolase 35.5 39 0.00084 30.5 3.2 51 30-83 129-191 (388)
70 PF10081 Abhydrolase_9: Alpha/ 34.4 47 0.001 29.3 3.4 37 41-77 85-121 (289)
71 KOG0840 ATP-dependent Clp prot 33.4 56 0.0012 28.5 3.6 68 24-96 79-152 (275)
72 KOG1838 Alpha/beta hydrolase [ 33.1 40 0.00088 31.2 2.9 34 43-79 179-212 (409)
73 PF11144 DUF2920: Protein of u 31.2 52 0.0011 30.4 3.3 33 45-77 163-196 (403)
74 TIGR03100 hydr1_PEP hydrolase, 30.5 60 0.0013 27.5 3.4 50 31-83 58-118 (274)
75 PLN02719 triacylglycerol lipas 30.5 48 0.001 31.6 3.0 38 46-83 277-316 (518)
76 PF00151 Lipase: Lipase; Inte 30.0 27 0.00058 31.2 1.2 55 30-85 104-170 (331)
77 cd03871 M14_CPB Peptidase M14 28.9 65 0.0014 28.4 3.4 36 46-83 10-45 (300)
78 PLN02324 triacylglycerol lipas 28.6 58 0.0013 30.2 3.2 34 46-80 197-230 (415)
79 PLN02753 triacylglycerol lipas 28.3 56 0.0012 31.3 3.1 38 46-83 291-330 (531)
80 PLN02847 triacylglycerol lipas 27.9 62 0.0014 31.6 3.3 35 48-85 237-271 (633)
81 PLN02652 hydrolase; alpha/beta 27.6 44 0.00094 30.5 2.2 36 46-84 192-227 (395)
82 TIGR01840 esterase_phb esteras 27.2 43 0.00092 27.1 1.9 39 46-85 77-115 (212)
83 TIGR00976 /NonD putative hydro 26.3 48 0.001 31.4 2.3 38 46-85 80-117 (550)
84 KOG3724 Negative regulator of 26.3 66 0.0014 32.5 3.2 34 46-79 160-196 (973)
85 COG0429 Predicted hydrolase of 26.2 78 0.0017 28.6 3.4 33 43-78 129-161 (345)
86 PF10340 DUF2424: Protein of u 25.9 46 0.00099 30.5 2.0 56 30-85 154-215 (374)
87 PRK06489 hypothetical protein; 25.9 29 0.00063 30.6 0.7 54 29-85 104-174 (360)
88 PF00975 Thioesterase: Thioest 25.6 37 0.00081 27.3 1.3 22 66-87 67-88 (229)
89 PRK03204 haloalkane dehalogena 25.3 34 0.00073 29.1 1.0 20 179-208 253-272 (286)
90 TIGR03343 biphenyl_bphD 2-hydr 24.0 57 0.0012 26.9 2.1 18 181-208 250-267 (282)
91 COG4757 Predicted alpha/beta h 23.8 45 0.00097 29.0 1.4 22 64-85 104-125 (281)
92 PF02450 LCAT: Lecithin:choles 23.3 61 0.0013 29.4 2.3 37 47-83 101-137 (389)
93 smart00728 ChW Clostridial hyd 22.9 61 0.0013 20.4 1.6 28 160-187 4-31 (46)
94 PF05057 DUF676: Putative seri 22.8 66 0.0014 26.5 2.2 35 46-81 60-94 (217)
95 PLN02761 lipase class 3 family 22.6 82 0.0018 30.2 3.0 35 46-80 272-309 (527)
96 PRK10985 putative hydrolase; P 22.5 1E+02 0.0022 26.7 3.5 32 45-79 114-145 (324)
97 PLN02802 triacylglycerol lipas 22.0 88 0.0019 29.8 3.1 33 47-80 313-345 (509)
98 PF06259 Abhydrolase_8: Alpha/ 21.9 1.2E+02 0.0026 24.6 3.5 49 29-79 62-123 (177)
99 PLN02310 triacylglycerol lipas 21.8 84 0.0018 29.1 2.9 34 47-80 190-224 (405)
100 PLN03037 lipase class 3 family 21.7 84 0.0018 30.1 2.9 33 47-79 299-332 (525)
101 KOG1454 Predicted hydrolase/ac 21.3 35 0.00076 30.3 0.3 36 47-85 113-148 (326)
102 cd07017 S14_ClpP_2 Caseinolyti 21.1 1.1E+02 0.0024 24.2 3.2 50 31-83 9-58 (171)
103 TIGR02821 fghA_ester_D S-formy 20.7 73 0.0016 27.0 2.2 24 62-85 135-158 (275)
104 PF10929 DUF2811: Protein of u 20.6 1E+02 0.0022 20.5 2.3 22 43-64 5-26 (57)
105 PLN03087 BODYGUARD 1 domain co 20.1 66 0.0014 30.3 1.9 52 30-85 232-294 (481)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-60 Score=431.85 Aligned_cols=193 Identities=37% Similarity=0.587 Sum_probs=165.6
Q ss_pred CcccccccccceEEcCC-CceeecCCCcccCCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCC
Q 039388 1 SELVLLYENGPVHTAND-LSLVWNDCSSDKASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYD 63 (208)
Q Consensus 1 S~~G~f~e~GP~~~~~~-~~l~~n~~sW~~~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~ 63 (208)
|+.|+|.|+|||+++.| .+|..||+|||+.||||||||||||||| +|+++||++||++||||+
T Consensus 87 Sl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~ 166 (454)
T KOG1282|consen 87 SLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYK 166 (454)
T ss_pred chhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhc
Confidence 78899999999999977 4699999999999999999999999997 689999999999999999
Q ss_pred CCCeEEEcccccccccccccccccccccc------------------------------------------------CCC
Q 039388 64 KNDFYITGESYAGHYIPAFASPHYSTRKK------------------------------------------------YEG 95 (208)
Q Consensus 64 ~~~~~i~geSY~G~yip~~a~~~yd~~~~------------------------------------------------c~~ 95 (208)
+|||||+||||||||||+||+++.+-.+. |..
T Consensus 167 ~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~ 246 (454)
T KOG1282|consen 167 SNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDF 246 (454)
T ss_pred CCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhcc
Confidence 99999999999999999999983322211 110
Q ss_pred -------------------------------------Ccccc------------------chhhhhccCchHHHHHhCCC
Q 039388 96 -------------------------------------EYCYD------------------LSIMEKFLNEKSVKDALGAM 120 (208)
Q Consensus 96 -------------------------------------~~c~~------------------~~~~~~yLN~~~Vr~ALhV~ 120 (208)
+.|+. ....++|||+++||+||||+
T Consensus 247 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~i~~y~i~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~VrkALh~~ 326 (454)
T KOG1282|consen 247 SSDNYANVDPSNTKCNKAVEEFDSKTTGDIDNYYILTPDCYPTSYELKKPTDCYGYDPCLSDYAEKYLNRPEVRKALHAN 326 (454)
T ss_pred CcccccccCCchhHHHHHHHHHHHHHhccCchhhhcchhhccccccccccccccccCCchhhhHHHhcCCHHHHHHhCCC
Confidence 11321 01225799999999999998
Q ss_pred C-c--ccccccHhHhHH-------H---------------hhhcC-------chhhHHHHcccccccchhhhcCCcceee
Q 039388 121 D-I--RFDLCNKNVSIA-------L---------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFK 168 (208)
Q Consensus 121 ~-~--~w~~cs~~V~~~-------l---------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~ 168 (208)
. . +|+.||+.|... | |||+| ++|+++||++|+++. .++|+||+
T Consensus 327 ~~~~~~W~~Cn~~v~~~~~~~~~sm~p~~~~~~~~~~~rvliysGD~D~~~p~~gt~~~i~~L~~~~-----~~~~~pW~ 401 (454)
T KOG1282|consen 327 KTSIGKWERCNDEVNYNYNDDIKSMLPIHKKLIASGGYRVLIYSGDHDLVVPFLGTQAWIKSLNLSI-----TDEWRPWY 401 (454)
T ss_pred CCCCCcccccChhhhcccccCccchHHHHHHHhhcCceEEEEEeCCcceeCcchhhHHHHHhccCcc-----ccCccCCc
Confidence 3 2 699999999531 1 99999 999999999999664 78999999
Q ss_pred eC-CEeeeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388 169 VD-GAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 169 v~-g~~~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
++ +|+|||+|+|++|+|+| |+|||||||.|
T Consensus 402 ~~~~qvaG~~~~Y~~ltf~t----------VrGaGH~VP~~ 432 (454)
T KOG1282|consen 402 HKGGQVAGYTKTYGGLTFAT----------VRGAGHMVPYD 432 (454)
T ss_pred cCCCceeeeEEEecCEEEEE----------EeCCcccCCCC
Confidence 96 89999999999999999 99999999986
No 2
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=1.8e-58 Score=414.50 Aligned_cols=195 Identities=37% Similarity=0.619 Sum_probs=161.6
Q ss_pred CcccccccccceEEc--CCCceeecCCCcccCCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCC
Q 039388 1 SELVLLYENGPVHTA--NDLSLVWNDCSSDKASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCY 62 (208)
Q Consensus 1 S~~G~f~e~GP~~~~--~~~~l~~n~~sW~~~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~ 62 (208)
||.|+|.|+|||+++ .+.+++.||+||++.||||||||||||||| +++++||++||.+||++
T Consensus 54 S~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~ 133 (415)
T PF00450_consen 54 SMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEY 133 (415)
T ss_dssp THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGG
T ss_pred cccccccccCceEEeecccccccccccccccccceEEEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhc
Confidence 789999999999999 348899999999999999999999999997 58999999999999999
Q ss_pred CCCCeEEEccccccccccccccc---------------------------------------------------------
Q 039388 63 DKNDFYITGESYAGHYIPAFASP--------------------------------------------------------- 85 (208)
Q Consensus 63 ~~~~~~i~geSY~G~yip~~a~~--------------------------------------------------------- 85 (208)
+++|+||+||||||+|||.+|.+
T Consensus 134 ~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp~~~~~s~~~~~~~~gli~~~~~~~~~~~~~ 213 (415)
T PF00450_consen 134 RSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDPRIQYNSYADYAYYHGLIDDQQYDDLNKACE 213 (415)
T ss_dssp TTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHT
T ss_pred cCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccccccceeecccccccCcccHHHHHHHHHHhh
Confidence 99999999999999999999998
Q ss_pred ---------------------------------cccccccCC-----------CCccccchhhhhccCchHHHHHhCCC-
Q 039388 86 ---------------------------------HYSTRKKYE-----------GEYCYDLSIMEKFLNEKSVKDALGAM- 120 (208)
Q Consensus 86 ---------------------------------~yd~~~~c~-----------~~~c~~~~~~~~yLN~~~Vr~ALhV~- 120 (208)
+||++++|. ...|.+...+..|||+++||+||||+
T Consensus 214 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~n~Ydi~~~~~~~~~~~~~~~~~~~~~~~~~~~~yln~~~Vr~aL~v~~ 293 (415)
T PF00450_consen 214 ACPQCQKAITECAAALDELSCQYAISQCNGGINPYDIRQPCYNPSRSSYDNSPSNDPPDDDYLEAYLNRPDVREALHVPV 293 (415)
T ss_dssp TSHSSSCCHHHHHHHHHHHHHHCHHHHHHTTSETTSTTSEETT-SHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT-ST
T ss_pred ccccccchhhHHHHHHHhhhhhcccccccCCcceeeeeccccccccccccccccccccchhhHHHHhccHHHHHhhCCCc
Confidence 344444441 12244557789999999999999996
Q ss_pred --CcccccccHhH-hHHH----------------------hhhcC-------chhhHHHHcccccccchhhhcCCcceee
Q 039388 121 --DIRFDLCNKNV-SIAL----------------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFK 168 (208)
Q Consensus 121 --~~~w~~cs~~V-~~~l----------------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~ 168 (208)
..+|+.||+.| +..+ |||+| ++|+++|+++|+|+++++|+.++++
T Consensus 294 ~~~~~w~~~~~~V~~~~~~~d~~~~~~~~l~~lL~~~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~--- 370 (415)
T PF00450_consen 294 DSNVNWQSCNDAVNFNWLYDDFMPSSIPDLPELLDNGIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRK--- 370 (415)
T ss_dssp TTSSS--SB-HHHHHHCCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEE---
T ss_pred ccCCcccccCcccccccccccccccchhhhhhhhhccceeEEeccCCCEEEEeccchhhhhccccCccccccccccc---
Confidence 47899999999 3211 99999 8999999999999998888877666
Q ss_pred eCCEeeeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388 169 VDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 169 v~g~~~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
.+++++||+|++++|||++ |++||||||+|
T Consensus 371 ~~~~~~G~~k~~~~ltf~~----------V~~AGHmvP~d 400 (415)
T PF00450_consen 371 VNGQVAGYVKQYGNLTFVT----------VRGAGHMVPQD 400 (415)
T ss_dssp TTCSEEEEEEEETTEEEEE----------ETT--SSHHHH
T ss_pred ccccccceeEEeccEEEEE----------EcCCcccChhh
Confidence 5899999999999999999 99999999986
No 3
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=6.6e-56 Score=407.81 Aligned_cols=198 Identities=36% Similarity=0.638 Sum_probs=176.3
Q ss_pred CcccccccccceEEcCC-CceeecCCCcccCCCceeeecCcccchH---------------HHHHHHHHHHHhhCCCCCC
Q 039388 1 SELVLLYENGPVHTAND-LSLVWNDCSSDKASNLMFVDQLTENGVS---------------NNLYDFLQAFFVEHPCYDK 64 (208)
Q Consensus 1 S~~G~f~e~GP~~~~~~-~~l~~n~~sW~~~an~lfiDqPv~~g~s---------------~~~~~fl~~f~~~~p~~~~ 64 (208)
||.|+|+|||||+++++ .++..||+||++.+||||||||+|+||| +|+++||+.||++||++++
T Consensus 91 s~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~ 170 (462)
T PTZ00472 91 SMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRA 170 (462)
T ss_pred HHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccC
Confidence 78999999999999987 5899999999999999999999999987 6899999999999999999
Q ss_pred CCeEEEcccccccccccccccc----------------------------------------------------------
Q 039388 65 NDFYITGESYAGHYIPAFASPH---------------------------------------------------------- 86 (208)
Q Consensus 65 ~~~~i~geSY~G~yip~~a~~~---------------------------------------------------------- 86 (208)
+|+||+||||||+|+|.+|.++
T Consensus 171 ~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~ 250 (462)
T PTZ00472 171 NDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEM 250 (462)
T ss_pred CCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHH
Confidence 9999999999999999998871
Q ss_pred ----------------------------------------------ccccccCCCCccccchhhhhccCchHHHHHhCCC
Q 039388 87 ----------------------------------------------YSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAM 120 (208)
Q Consensus 87 ----------------------------------------------yd~~~~c~~~~c~~~~~~~~yLN~~~Vr~ALhV~ 120 (208)
||++..|..+.|++...+++|||+++||+||||+
T Consensus 251 ~~~~~~c~~~~~~c~~~~~~~~~~c~~a~~~c~~~~~~~~~~g~n~Ydi~~~c~~~~c~~~~~~~~yLN~~~Vq~AL~v~ 330 (462)
T PTZ00472 251 SSMVPACQKKIKECNSNPDDADSSCSVARALCNEYIAVYSATGLNNYDIRKPCIGPLCYNMDNTIAFMNREDVQSSLGVK 330 (462)
T ss_pred HHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHhcCCChhheeccCCCCCccCHHHHHHHhCCHHHHHHhCCC
Confidence 1111112122344556788999999999999998
Q ss_pred CcccccccHhHhHHH----------------------hhhcC-------chhhHHHHcccccccchhhhcCCccee-eeC
Q 039388 121 DIRFDLCNKNVSIAL----------------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPF-KVD 170 (208)
Q Consensus 121 ~~~w~~cs~~V~~~l----------------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~-~v~ 170 (208)
..+|+.||+.|+.++ |||+| ++|+++|+++|+|+++++|++++|+|| .++
T Consensus 331 ~~~w~~c~~~V~~~~~~D~~~~~~~~l~~LL~~gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~ 410 (462)
T PTZ00472 331 PATWQSCNMEVNLMFEMDWMKNFNYTVPGLLEDGVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVD 410 (462)
T ss_pred CCCceeCCHHHHHHhhhccccchHHHHHHHHhcCceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecC
Confidence 678999999986543 99999 899999999999999999999999999 578
Q ss_pred CEeeeEEEEec-----CcEEEEEeeeccccceecCccccCcCC
Q 039388 171 GAKAGQMKSYR-----LLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 171 g~~~G~~k~~~-----~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
++++||+|+++ +|+|++ |++||||||.|
T Consensus 411 ~~v~G~vk~~~~~~~~~l~~~~----------V~~AGH~vp~d 443 (462)
T PTZ00472 411 GRWAGLVRSAASNTSSGFSFVQ----------VYNAGHMVPMD 443 (462)
T ss_pred CEeceEEEEEecccCCCeEEEE----------ECCCCccChhh
Confidence 99999999999 999999 99999999986
No 4
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=1.6e-53 Score=389.12 Aligned_cols=191 Identities=27% Similarity=0.490 Sum_probs=160.6
Q ss_pred CcccccccccceEEcCC------CceeecCCCcccCCCceeeecCcccchH---------------HHHHHHHHHHHhhC
Q 039388 1 SELVLLYENGPVHTAND------LSLVWNDCSSDKASNLMFVDQLTENGVS---------------NNLYDFLQAFFVEH 59 (208)
Q Consensus 1 S~~G~f~e~GP~~~~~~------~~l~~n~~sW~~~an~lfiDqPv~~g~s---------------~~~~~fl~~f~~~~ 59 (208)
||.|+|.|+|||+++++ .++++||+||++.||||||||||||||| +|+++||++||++|
T Consensus 82 S~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~ 161 (437)
T PLN02209 82 CLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKH 161 (437)
T ss_pred HhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 78999999999999865 3789999999999999999999999997 57999999999999
Q ss_pred CCCCCCCeEEEcccccccccccccccccc------------------------------------------------ccc
Q 039388 60 PCYDKNDFYITGESYAGHYIPAFASPHYS------------------------------------------------TRK 91 (208)
Q Consensus 60 p~~~~~~~~i~geSY~G~yip~~a~~~yd------------------------------------------------~~~ 91 (208)
|+|+++|+||+||||||||||.+|+++.+ +++
T Consensus 162 p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~~q~~~~~~y~~~~glI~~~~~~~~~~ 241 (437)
T PLN02209 162 PQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIEFEQNFRIPYAHGMSLISDELYESLKR 241 (437)
T ss_pred ccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccChhhhhhhHHHHHhccCCCCHHHHHHHHH
Confidence 99999999999999999999999876211 111
Q ss_pred cCCC---------------------------------Cc------------ccc--chhhhhccCchHHHHHhCCCC---
Q 039388 92 KYEG---------------------------------EY------------CYD--LSIMEKFLNEKSVKDALGAMD--- 121 (208)
Q Consensus 92 ~c~~---------------------------------~~------------c~~--~~~~~~yLN~~~Vr~ALhV~~--- 121 (208)
.|.. +. |.+ ...++.|||+++||+||||+.
T Consensus 242 ~c~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~~ 321 (437)
T PLN02209 242 ICKGNYFSVDPSNKKCLKLVEEYHKCTDNINSHHTLIANCDDSNTQHISPDCYYYPYHLVECWANNESVREALHVDKGSI 321 (437)
T ss_pred hcccccccCCCChHHHHHHHHHHHHHhhcCCccccccccccccccccCCCCcccccHHHHHHHhCCHHHHHHhCCCCCCC
Confidence 2210 01 211 134688999999999999973
Q ss_pred cccccccHhHhH-----H--------------HhhhcC-------chhhHHHHcccccccchhhhcCCcceeeeCCEeee
Q 039388 122 IRFDLCNKNVSI-----A--------------LVFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAG 175 (208)
Q Consensus 122 ~~w~~cs~~V~~-----~--------------lLiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~v~g~~~G 175 (208)
..|..|+..+.. . .|||+| ++|+++|+++|+|++++ +|+||+++++++|
T Consensus 322 ~~w~~~~~~~~~~~d~~~~~~~~~~~l~~girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~-----~~~~w~~~~q~aG 396 (437)
T PLN02209 322 GEWIRDHRGIPYKSDIRSSIPYHMNNSINGYRSLIFSGDHDITMPFQATQAWIKSLNYSIID-----DWRPWMIKGQIAG 396 (437)
T ss_pred CCCccccchhhcccchhhhHHHHHHHHhcCceEEEEECCccccCCcHhHHHHHHhcCCccCC-----CeeeeEECCEeee
Confidence 369999865411 0 199999 89999999999999964 5789999999999
Q ss_pred EEEEecC-cEEEEEeeeccccceecCccccCc
Q 039388 176 QMKSYRL-LTLLRIYFCLFIENEVHNSGHMVP 206 (208)
Q Consensus 176 ~~k~~~~-ltf~~~~~~~~~~~~V~~AGHmvP 206 (208)
|+|+++| |||++ |+|||||||
T Consensus 397 ~vk~y~n~Ltfv~----------V~~AGHmVp 418 (437)
T PLN02209 397 YTRTYSNKMTFAT----------VKGGGHTAE 418 (437)
T ss_pred EEEEeCCceEEEE----------EcCCCCCcC
Confidence 9999996 99999 999999998
No 5
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=2.1e-53 Score=388.12 Aligned_cols=192 Identities=26% Similarity=0.488 Sum_probs=161.4
Q ss_pred CcccccccccceEEcCC------CceeecCCCcccCCCceeeecCcccchH---------------HHHHHHHHHHHhhC
Q 039388 1 SELVLLYENGPVHTAND------LSLVWNDCSSDKASNLMFVDQLTENGVS---------------NNLYDFLQAFFVEH 59 (208)
Q Consensus 1 S~~G~f~e~GP~~~~~~------~~l~~n~~sW~~~an~lfiDqPv~~g~s---------------~~~~~fl~~f~~~~ 59 (208)
|+.|+|+|+|||+++.+ .++..||+||++.||||||||||||||| +++++||++||++|
T Consensus 80 S~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~ 159 (433)
T PLN03016 80 CLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRH 159 (433)
T ss_pred HHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 67899999999998642 4788999999999999999999999997 37999999999999
Q ss_pred CCCCCCCeEEEcccccccccccccccccc------------------------------------------------ccc
Q 039388 60 PCYDKNDFYITGESYAGHYIPAFASPHYS------------------------------------------------TRK 91 (208)
Q Consensus 60 p~~~~~~~~i~geSY~G~yip~~a~~~yd------------------------------------------------~~~ 91 (208)
|+|+++|+||+||||||||||++|+++.+ +++
T Consensus 160 p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~~~~~~~~~y~~~~glI~~~~~~~i~~ 239 (433)
T PLN03016 160 PQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKR 239 (433)
T ss_pred hhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCchhhhhhHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999887221 111
Q ss_pred cCCC---------------------------------Ccc----------cc--chhhhhccCchHHHHHhCCC---Ccc
Q 039388 92 KYEG---------------------------------EYC----------YD--LSIMEKFLNEKSVKDALGAM---DIR 123 (208)
Q Consensus 92 ~c~~---------------------------------~~c----------~~--~~~~~~yLN~~~Vr~ALhV~---~~~ 123 (208)
.|.. +.| ++ ...+++|||+++||+||||+ ..+
T Consensus 240 ~c~~~~~~~~~~~~~C~~~~~~~~~~~~~~n~yni~~~~~~~~~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~~~~ 319 (433)
T PLN03016 240 ICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKGK 319 (433)
T ss_pred HhccccccCCCchHHHHHHHHHHHHHhcCCChhhccCCcccccccCCCcccccchHHHHHHhCCHHHHHHhCCCCCCCCC
Confidence 2210 012 11 12467899999999999997 358
Q ss_pred cccccHhHhHH-----------------H--hhhcC-------chhhHHHHcccccccchhhhcCCcceeeeCCEeeeEE
Q 039388 124 FDLCNKNVSIA-----------------L--VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQM 177 (208)
Q Consensus 124 w~~cs~~V~~~-----------------l--LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~v~g~~~G~~ 177 (208)
|..||..|... + |||+| ++|+++|+++|+|++++ +|+||+++++++||+
T Consensus 320 w~~cn~~v~~~~d~~~~~~~~~~~l~~~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~-----~~~~w~~~~~~~G~v 394 (433)
T PLN03016 320 WARCNRTIPYNHDIVSSIPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIH-----NWRPWMINNQIAGYT 394 (433)
T ss_pred CccCCcccccccccchhhHHHHHHHhcCceEEEEECCccccCCcHhHHHHHHhCCCCCCC-----CcccccCCCEeeeEE
Confidence 99999876311 0 99999 89999999999999854 588999999999999
Q ss_pred EEecC-cEEEEEeeeccccceecCccccCcC
Q 039388 178 KSYRL-LTLLRIYFCLFIENEVHNSGHMVPT 207 (208)
Q Consensus 178 k~~~~-ltf~~~~~~~~~~~~V~~AGHmvP~ 207 (208)
|+|++ |||++ |++||||||.
T Consensus 395 k~y~n~ltfv~----------V~~AGHmVp~ 415 (433)
T PLN03016 395 RAYSNKMTFAT----------IKAGGHTAEY 415 (433)
T ss_pred EEeCCceEEEE----------EcCCCCCCCC
Confidence 99986 99999 9999999983
No 6
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=8.4e-47 Score=332.81 Aligned_cols=163 Identities=25% Similarity=0.524 Sum_probs=136.0
Q ss_pred CCCceeeecCcccchH---------------HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccccccccccc------
Q 039388 30 ASNLMFVDQLTENGVS---------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYS------ 88 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s---------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~~yd------ 88 (208)
.|||||||||+||||| +|++.||+.||++||+|+++||||+||||||||||++|+++++
T Consensus 1 ~aNvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~ 80 (319)
T PLN02213 1 MANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICC 80 (319)
T ss_pred CccEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccccc
Confidence 4899999999999997 5799999999999999999999999999999999999987221
Q ss_pred ------------------------------------------ccccCCC-------------------------------
Q 039388 89 ------------------------------------------TRKKYEG------------------------------- 95 (208)
Q Consensus 89 ------------------------------------------~~~~c~~------------------------------- 95 (208)
+.+.|..
T Consensus 81 ~~~inLkGi~IGNg~t~~~~~~~~~~~~~~~~gli~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 160 (319)
T PLN02213 81 EPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCTAKINIHHI 160 (319)
T ss_pred CCceeeeEEEeCCCCCCccccchhHhhHHHhcCCCCHHHHHHHHHhcCCCccCCCCCcHHHHHHHHHHHHHHhcCCHhhc
Confidence 0111210
Q ss_pred --C----------cccc--chhhhhccCchHHHHHhCCC---CcccccccHhHhHH-----------------H--hhhc
Q 039388 96 --E----------YCYD--LSIMEKFLNEKSVKDALGAM---DIRFDLCNKNVSIA-----------------L--VFYL 139 (208)
Q Consensus 96 --~----------~c~~--~~~~~~yLN~~~Vr~ALhV~---~~~w~~cs~~V~~~-----------------l--LiY~ 139 (208)
+ .|++ ...+.+|||+++||+||||+ ..+|+.||..|... + |||+
T Consensus 161 ~~~~~~~~~~~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~~~~w~~c~~~v~~~~d~~~~~~~~~~~l~~~i~VliY~ 240 (319)
T PLN02213 161 LTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKGKWARCNRTIPYNHDIVSSIPYHMNNSISGYRSLIYS 240 (319)
T ss_pred ccCcccCccCCCCCcccchhHHHHHHhCCHHHHHHhCcCCCCCCCCccCCcccccccccccchHHHHHHHhcCceEEEEE
Confidence 0 1221 13578899999999999997 35899999875421 1 9999
Q ss_pred C-------chhhHHHHcccccccchhhhcCCcceeeeCCEeeeEEEEecC-cEEEEEeeeccccceecCccccCcC
Q 039388 140 L-------SAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRL-LTLLRIYFCLFIENEVHNSGHMVPT 207 (208)
Q Consensus 140 G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~v~g~~~G~~k~~~~-ltf~~~~~~~~~~~~V~~AGHmvP~ 207 (208)
| ++|+++|+++|+|++++ +|+||.++++++||+|+|++ |||++ |++||||||.
T Consensus 241 Gd~D~icn~~g~~~wi~~L~w~~~~-----~~~~w~~~~~~~G~vk~y~~~ltf~~----------V~~AGHmV~~ 301 (319)
T PLN02213 241 GDHDIAVPFLATQAWIRSLNYSPIH-----NWRPWMINNQIAGYTRAYSNKMTFAT----------IKAGGHTAEY 301 (319)
T ss_pred CCcCeeCCcHhHHHHHHhcCCCCCC-----CCccccCCCEeeeEEEEecCcceEEE----------EcCCCCCCCc
Confidence 9 89999999999999864 48899999999999999986 99999 9999999983
No 7
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=307.44 Aligned_cols=198 Identities=32% Similarity=0.467 Sum_probs=171.7
Q ss_pred CcccccccccceEEcCCCcee--ecCCCcccCCCceeeecCcccchH---------------HHHHHHHHHHHhhCCCCC
Q 039388 1 SELVLLYENGPVHTANDLSLV--WNDCSSDKASNLMFVDQLTENGVS---------------NNLYDFLQAFFVEHPCYD 63 (208)
Q Consensus 1 S~~G~f~e~GP~~~~~~~~l~--~n~~sW~~~an~lfiDqPv~~g~s---------------~~~~~fl~~f~~~~p~~~ 63 (208)
|+.|+|.|+||.+|+.+.+.. .||+||++++||||||||+||||| +|++.|++.|+..||++.
T Consensus 115 S~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~~~~~~f~~~fp~~~ 194 (498)
T COG2939 115 SVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVYSFLRLFFDKFPHYA 194 (498)
T ss_pred hhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhHHHHHHHHHHHHHHHh
Confidence 788999999999999874444 599999999999999999999998 589999999999999998
Q ss_pred CC--CeEEEccccccccccccccc--------------------------------------------------------
Q 039388 64 KN--DFYITGESYAGHYIPAFASP-------------------------------------------------------- 85 (208)
Q Consensus 64 ~~--~~~i~geSY~G~yip~~a~~-------------------------------------------------------- 85 (208)
+. |+||+||||||+|+|.||+.
T Consensus 195 r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~ 274 (498)
T COG2939 195 RLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKA 274 (498)
T ss_pred hhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHH
Confidence 88 99999999999999999988
Q ss_pred -------------------------------------------------cccccccCCCCc----ccc-chhhhhccCch
Q 039388 86 -------------------------------------------------HYSTRKKYEGEY----CYD-LSIMEKFLNEK 111 (208)
Q Consensus 86 -------------------------------------------------~yd~~~~c~~~~----c~~-~~~~~~yLN~~ 111 (208)
+|++|..|.++. ||+ .....+|++..
T Consensus 275 ~~~~~~d~~~~l~~g~~~~~~~~~c~~~~~~~~~~~~~~~~r~~~~~~n~y~~r~~~~d~g~~~~~y~~~~~~ld~~~~~ 354 (498)
T COG2939 275 EKYCAGDYCLALMKGCYDSGSLQPCENASAYLTGLMREYVGRAGGRLLNVYDIREECRDPGLGGSCYDTLSTSLDYFNFD 354 (498)
T ss_pred HHHhhhhhHhhhccCCCCchhhhHHHHHHHHHHhcchhhhccccccccccccchhhcCCCCcccccccceeecccccccc
Confidence 355555565432 443 35677899988
Q ss_pred HHHHHhCCCCcccccccHhHhHHH-------------------------hhhcC-------chhhHHHHcccccccchhh
Q 039388 112 SVKDALGAMDIRFDLCNKNVSIAL-------------------------VFYLL-------SAENSKWVHAVEWSGRKDF 159 (208)
Q Consensus 112 ~Vr~ALhV~~~~w~~cs~~V~~~l-------------------------LiY~G-------~~G~~~wi~~L~W~g~~~F 159 (208)
.++++++.....|..|+.+|...+ ++|.| +.|+++|...|+|.+..+|
T Consensus 355 ~~~~~~~~~~d~~~~c~t~a~~~f~~~~~~~~~~~~~~~~~~lv~~~~~~~~~gd~d~icn~~~~~a~~~~Lkw~~~~g~ 434 (498)
T COG2939 355 PEQEVNDPEVDNISGCTTDAMTDFLTFTGGWAKPSRYLVLNLLVNNVWILLYAGDKDFICNLRGNMALDPKLKWLGASGY 434 (498)
T ss_pred chhccccccccchhccchHHHHhhhhhcCCcccccHHHHhhhhhcCCceeeeecCchhHhhhhhhcccCCcceEeeecch
Confidence 888888876567999998886553 77777 8999999999999999999
Q ss_pred hcCCcceeee--CCEeeeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388 160 EVALTAPFKV--DGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 160 ~~a~~~~~~v--~g~~~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
..+.-.+|.. ..+..|-+++++|++|++ ++.||||||.|
T Consensus 435 ~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r----------~y~aGHMvp~d 475 (498)
T COG2939 435 FDASTPFFWSRLTLEEMGGYKSYRNLTFLR----------IYEAGHMVPYD 475 (498)
T ss_pred hhhcCCCcccccchhhcccccccCCceEEE----------EecCcceeecC
Confidence 9999999965 678899999999999999 99999999986
No 8
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-38 Score=270.97 Aligned_cols=192 Identities=27% Similarity=0.443 Sum_probs=163.9
Q ss_pred cccccccccceEEcCCCceeecCCCcccCCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCCCC
Q 039388 2 ELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYDKN 65 (208)
Q Consensus 2 ~~G~f~e~GP~~~~~~~~l~~n~~sW~~~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~~~ 65 (208)
.+|+|.|+||..++ +.+|+.+|-+.|+|||||+|||+||| .|+.+.|++||..||||+.+
T Consensus 47 G~GNFeE~GPl~~~----~~~r~~TWlk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~ 122 (414)
T KOG1283|consen 47 GFGNFEELGPLDLD----GSPRDWTWLKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTV 122 (414)
T ss_pred CccchhhcCCcccC----CCcCCchhhhhccEEEecCCCcCceeeecCcccccccHHHHHHHHHHHHHHHHhcCcccccc
Confidence 57999999999764 67999999999999999999999997 58999999999999999999
Q ss_pred CeEEEcccccccccccccccccc---------------------------------------------------------
Q 039388 66 DFYITGESYAGHYIPAFASPHYS--------------------------------------------------------- 88 (208)
Q Consensus 66 ~~~i~geSY~G~yip~~a~~~yd--------------------------------------------------------- 88 (208)
||||+-|||||+..|.+|..+++
T Consensus 123 P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~V~SWGP~L~~~S~LDD~GLds~ns~A~k~~~ 202 (414)
T KOG1283|consen 123 PLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKG 202 (414)
T ss_pred ceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhHhhhcchHHHHhhhhhcccCccchhhhHHhhcc
Confidence 99999999999999999988322
Q ss_pred --------------------------------ccccCCCC--------------ccc----------cchhhhhccCchH
Q 039388 89 --------------------------------TRKKYEGE--------------YCY----------DLSIMEKFLNEKS 112 (208)
Q Consensus 89 --------------------------------~~~~c~~~--------------~c~----------~~~~~~~yLN~~~ 112 (208)
+.++...+ .|+ +.+.++++|| .-
T Consensus 203 ~v~~g~~~~AT~~Wg~~e~li~~~sn~VdfYNil~~t~~d~~~~ss~~~~~~~~~~rrl~~~~~~~~~~D~L~~lM~-g~ 281 (414)
T KOG1283|consen 203 GVDGGKWGGATGGWGGGENLISRESNGVDFYNILTKTLGDQYSLSSRAAMTPEEVMRRLLVRFVGDEDRDKLSDLMN-GP 281 (414)
T ss_pred cccCCccccccccccCcCcceeecccCcceeeeeccCCCcchhhhhhhhcchHHHHHHHHhccCcchhHHHHHHHhc-cc
Confidence 11111000 010 1134778888 56
Q ss_pred HHHHhCCC--CcccccccHhHhHHH----------------------hhhcC-------chhhHHHHcccccccchhhhc
Q 039388 113 VKDALGAM--DIRFDLCNKNVSIAL----------------------VFYLL-------SAENSKWVHAVEWSGRKDFEV 161 (208)
Q Consensus 113 Vr~ALhV~--~~~w~~cs~~V~~~l----------------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~ 161 (208)
||++|++. ...|...+.+|+..| -|||| ++|+++|+++|.|+..+.|+.
T Consensus 282 vrkkLgIip~~~~wGgqsg~vFt~lq~dFMKPvi~~VdeLL~~Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f~~ 361 (414)
T KOG1283|consen 282 VRKKLGIIPGGVKWGGQSGDVFTKLQGDFMKPVISKVDELLNNGVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSFQV 361 (414)
T ss_pred ccccccccCCCCcccCcCCchHHHhhhhhcccHHHHHHHHHhCCceEEEEecccchhhcccchhhhhhheecCCCCcccc
Confidence 89999986 478999999998754 57888 899999999999999999999
Q ss_pred CCcceeeeCCEeeeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388 162 ALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 162 a~~~~~~v~g~~~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
.+|.-.+++-..+||.|+|+||.|.+ |..||||||.|
T Consensus 362 ~~r~~~~~s~~l~gy~ktyknl~f~w----------ilraghmvp~D 398 (414)
T KOG1283|consen 362 SPRVGITVSRVLEGYEKTYKNLSFFW----------ILRAGHMVPAD 398 (414)
T ss_pred ceeeeccceeecchhhhhhccceeEE----------eecccCcccCC
Confidence 99999988778999999999999999 99999999987
No 9
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=88.34 E-value=0.34 Score=37.81 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=36.8
Q ss_pred cCCCceeeecCcccchH-----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS-----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s-----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+++-+|.|- .|.| ++..+.+..+++.... .+++|.|+|+||..+-.++..
T Consensus 23 ~~~~v~~~d~~G-~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 23 RGYRVIAFDLPG-HGRSDPPPDYSPYSIEDYAEDLAELLDALGI---KKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp TTSEEEEEECTT-STTSSSHSSGSGGSHHHHHHHHHHHHHHTTT---SSEEEEEETHHHHHHHHHHHH
T ss_pred CCCEEEEEecCC-ccccccccccCCcchhhhhhhhhhccccccc---ccccccccccccccccccccc
Confidence 456788899873 2222 3445556666665433 689999999999988777765
No 10
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=85.37 E-value=0.62 Score=42.72 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCceeeecCcccchHH------H---HHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVSN------N---LYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s~------~---~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.++|-+|.| |.|.|. | ....+..++...|.....++.|+|.|+||..++.+|..
T Consensus 223 y~vl~~D~p-G~G~s~~~~~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~ 285 (414)
T PRK05077 223 IAMLTIDMP-SVGFSSKWKLTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYL 285 (414)
T ss_pred CEEEEECCC-CCCCCCCCCccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHh
Confidence 678889999 666552 2 22345566667777777789999999999999888754
No 11
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=85.29 E-value=0.51 Score=38.09 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred cCCCceeeecCcccchH----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+++-+|.|- .|.| ++..+.+..+++.. ...+++|+|+|+||..+..+|..
T Consensus 38 ~~~~vi~~D~~G-~G~S~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~l~G~S~Gg~~a~~~a~~ 100 (257)
T TIGR03611 38 QRFHVVTYDHRG-TGRSPGELPPGYSIAHMADDVLQLLDAL---NIERFHFVGHALGGLIGLQLALR 100 (257)
T ss_pred hccEEEEEcCCC-CCCCCCCCcccCCHHHHHHHHHHHHHHh---CCCcEEEEEechhHHHHHHHHHH
Confidence 356889999873 3322 23344455555432 33579999999999988877754
No 12
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=79.01 E-value=1.7 Score=41.87 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=40.6
Q ss_pred CCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..|+.++---.+|++ +|+.+++. |+...|.-....+.|+|.||||-..-.++..
T Consensus 424 ~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~ 493 (620)
T COG1506 424 YAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATK 493 (620)
T ss_pred eEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhc
Confidence 556777644345543 57888888 9999999988899999999999766554444
No 13
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=78.49 E-value=1.7 Score=34.25 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCCceeeecCcccchH-----------HHHHHH-HHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS-----------NNLYDF-LQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s-----------~~~~~f-l~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.| |.|.| ++..+. +....+.. ..+++.|.|+|+||..+..+|..
T Consensus 27 ~~~v~~~d~~-g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~G~S~Gg~ia~~~a~~ 90 (251)
T TIGR03695 27 HFRCLAIDLP-GHGSSQSPDEIERYDFEEAAQDILATLLDQL---GIEPFFLVGYSMGGRIALYYALQ 90 (251)
T ss_pred cCeEEEEcCC-CCCCCCCCCccChhhHHHHHHHHHHHHHHHc---CCCeEEEEEeccHHHHHHHHHHh
Confidence 4678888866 33332 122222 44444433 45689999999999988777765
No 14
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=78.25 E-value=0.75 Score=42.41 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=43.0
Q ss_pred CCCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
--+||=||-| |+|.| +.++..+-.++..-|+.....+-++|-|+||.|++.+|..
T Consensus 218 GiA~LtvDmP-G~G~s~~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~l 281 (411)
T PF06500_consen 218 GIAMLTVDMP-GQGESPKWPLTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAAL 281 (411)
T ss_dssp T-EEEEE--T-TSGGGTTT-S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred CCEEEEEccC-CCcccccCCCCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHh
Confidence 3467888877 66665 2477888888889999998899999999999999998853
No 15
>PRK10673 acyl-CoA esterase; Provisional
Probab=77.83 E-value=1.2 Score=36.45 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=34.0
Q ss_pred cCCCceeeecCcccch------------HHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGV------------SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~------------s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+++.+|.|- -|- ++|+..++.. +...++.|.|+|.||..+..+|..
T Consensus 41 ~~~~vi~~D~~G-~G~s~~~~~~~~~~~~~d~~~~l~~-------l~~~~~~lvGhS~Gg~va~~~a~~ 101 (255)
T PRK10673 41 NDHDIIQVDMRN-HGLSPRDPVMNYPAMAQDLLDTLDA-------LQIEKATFIGHSMGGKAVMALTAL 101 (255)
T ss_pred hCCeEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHHHH-------cCCCceEEEEECHHHHHHHHHHHh
Confidence 557999999883 332 2455554543 233569999999999988877755
No 16
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=75.65 E-value=2.4 Score=36.24 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred ecCCCccc--------CCCceeeecCcccchH----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 22 WNDCSSDK--------ASNLMFVDQLTENGVS----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 22 ~n~~sW~~--------~an~lfiDqPv~~g~s----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
.++..|.. -.+++-+|.|- .|-| ++..+.+..++..... ..+++|.|+|+||..+-.++
T Consensus 29 ~~~~~w~~~~~~L~~~g~~vi~~dl~g-~G~s~~~~~~~~~~~~~~~~l~~~i~~l~~--~~~v~lvGhS~GG~v~~~~a 105 (273)
T PLN02211 29 GGSWCWYKIRCLMENSGYKVTCIDLKS-AGIDQSDADSVTTFDEYNKPLIDFLSSLPE--NEKVILVGHSAGGLSVTQAI 105 (273)
T ss_pred CCcCcHHHHHHHHHhCCCEEEEecccC-CCCCCCCcccCCCHHHHHHHHHHHHHhcCC--CCCEEEEEECchHHHHHHHH
Confidence 45566742 35778899874 3321 3445666666664332 46899999999999766665
Q ss_pred cc
Q 039388 84 SP 85 (208)
Q Consensus 84 ~~ 85 (208)
..
T Consensus 106 ~~ 107 (273)
T PLN02211 106 HR 107 (273)
T ss_pred Hh
Confidence 43
No 17
>PRK00870 haloalkane dehalogenase; Provisional
Probab=75.17 E-value=1.9 Score=36.90 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCceeeecCcccchH-----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS-----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s-----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+++-+|.| |-|.| ++..+.+..+++. ....++.|.|+|+||..+-.+|..
T Consensus 74 y~vi~~Dl~-G~G~S~~~~~~~~~~~~~~a~~l~~~l~~---l~~~~v~lvGhS~Gg~ia~~~a~~ 135 (302)
T PRK00870 74 HRVIAPDLI-GFGRSDKPTRREDYTYARHVEWMRSWFEQ---LDLTDVTLVCQDWGGLIGLRLAAE 135 (302)
T ss_pred CEEEEECCC-CCCCCCCCCCcccCCHHHHHHHHHHHHHH---cCCCCEEEEEEChHHHHHHHHHHh
Confidence 678999977 33332 3445666666653 334579999999999977766654
No 18
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=75.02 E-value=1.1 Score=36.62 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=33.6
Q ss_pred CCCceeeecCcccchH------------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.| |.|.| +++.+.+..+.+ ++...+++|.|+|+||..+..+|..
T Consensus 53 g~~vi~~d~~-G~G~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~liG~S~Gg~ia~~~a~~ 116 (288)
T TIGR01250 53 GREVIMYDQL-GCGYSDQPDDSDELWTIDYFVDELEEVRE---KLGLDKFYLLGHSWGGMLAQEYALK 116 (288)
T ss_pred CCEEEEEcCC-CCCCCCCCCcccccccHHHHHHHHHHHHH---HcCCCcEEEEEeehHHHHHHHHHHh
Confidence 3788889977 44433 123333444443 2334569999999999988887765
No 19
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=74.55 E-value=1.3 Score=35.88 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFAS 84 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~ 84 (208)
-..|+.+|..-+.|++ +|+.+.++.. ...+......+.|.|.|+||+.+-.++.
T Consensus 14 Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l-~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 14 GYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYL-IKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp T-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHH-HHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHH-hccccccceeEEEEcccccccccchhhc
Confidence 3567888888877765 3454544444 3344555677999999999998776666
No 20
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=71.72 E-value=2.6 Score=32.78 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCceeeecCcccchHH----H---HHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVSN----N---LYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s~----~---~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+++.+|+| |.|.|. . ..+.+..|+.. +...++.+.|+|+||.-+-.++..
T Consensus 51 ~~~~~~d~~-g~g~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~S~Gg~~~~~~~~~ 108 (282)
T COG0596 51 YRVIAPDLR-GHGRSDPAGYSLSAYADDLAALLDA---LGLEKVVLVGHSMGGAVALALALR 108 (282)
T ss_pred eEEEEeccc-CCCCCCcccccHHHHHHHHHHHHHH---hCCCceEEEEecccHHHHHHHHHh
Confidence 689999999 988874 1 12344555552 333349999999998765544444
No 21
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=71.45 E-value=4.5 Score=35.93 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHHHh---hCCCCCCCCeEEEcccccccccccccc
Q 039388 47 NLYDFLQAFFV---EHPCYDKNDFYITGESYAGHYIPAFAS 84 (208)
Q Consensus 47 ~~~~fl~~f~~---~~p~~~~~~~~i~geSY~G~yip~~a~ 84 (208)
.+.+=+..||+ ..+++++.|.|+.|||-||--+--++.
T Consensus 108 ~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~ 148 (313)
T KOG1455|consen 108 LVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIAL 148 (313)
T ss_pred HHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHh
Confidence 34444555555 578899999999999999986655544
No 22
>PRK03204 haloalkane dehalogenase; Provisional
Probab=71.15 E-value=5.3 Score=34.12 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCceeeecCcccchH----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
..+++-+|.| |-|.| +++.+.+..+.+. +...+++|+|+|+||.-+-.++
T Consensus 60 ~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lvG~S~Gg~va~~~a 119 (286)
T PRK03204 60 RFRCVAPDYL-GFGLSERPSGFGYQIDEHARVIGEFVDH---LGLDRYLSMGQDWGGPISMAVA 119 (286)
T ss_pred CcEEEEECCC-CCCCCCCCCccccCHHHHHHHHHHHHHH---hCCCCEEEEEECccHHHHHHHH
Confidence 4688999977 33322 3455556666554 3345799999999997544433
No 23
>PRK11071 esterase YqiA; Provisional
Probab=69.54 E-value=3.3 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=37.1
Q ss_pred CCceeeecCcccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..++-.|-| |+.++..+.+.++.+.. ..++++|.|.|.||.++-.+|..
T Consensus 33 ~~v~~~dl~---g~~~~~~~~l~~l~~~~---~~~~~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 33 IEMIVPQLP---PYPADAAELLESLVLEH---GGDPLGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred CeEEeCCCC---CCHHHHHHHHHHHHHHc---CCCCeEEEEECHHHHHHHHHHHH
Confidence 466778887 45567777888887753 34579999999999988777765
No 24
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=69.48 E-value=3.2 Score=35.75 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=35.5
Q ss_pred cCCCceeeecCcccchH-----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS-----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s-----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+++-+|.| |-|.| .++.+.+..+.+.. ...++.++|+|+||..+-.++..
T Consensus 52 ~~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l---~~~~~~lvG~S~GG~ia~~~a~~ 115 (306)
T TIGR01249 52 ETYRIVLFDQR-GCGKSTPHACLEENTTWDLVADIEKLREKL---GIKNWLVFGGSWGSTLALAYAQT 115 (306)
T ss_pred cCCEEEEECCC-CCCCCCCCCCcccCCHHHHHHHHHHHHHHc---CCCCEEEEEECHHHHHHHHHHHH
Confidence 34689999987 44432 34555555555543 33579999999999877766654
No 25
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=67.78 E-value=5.1 Score=33.57 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.|+.++++.|++.++ .+|||.|+|+|-|+..+-.|-+.
T Consensus 78 ~DV~~AF~~yL~~~n--~GRPfILaGHSQGs~~l~~LL~e 115 (207)
T PF11288_consen 78 SDVRAAFDYYLANYN--NGRPFILAGHSQGSMHLLRLLKE 115 (207)
T ss_pred HHHHHHHHHHHHhcC--CCCCEEEEEeChHHHHHHHHHHH
Confidence 588899999999775 56899999999999876554433
No 26
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=66.29 E-value=3.7 Score=34.53 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=35.2
Q ss_pred cCCCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+++-+|.| |-|.| +++.+.+..++... .-.+++|+|+|.||..+-.+|.+
T Consensus 50 ~~~~vi~~Dl~-G~G~S~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~LvG~S~GG~va~~~a~~ 111 (276)
T TIGR02240 50 PDLEVIAFDVP-GVGGSSTPRHPYRFPGLAKLAARMLDYL---DYGQVNAIGVSWGGALAQQFAHD 111 (276)
T ss_pred cCceEEEECCC-CCCCCCCCCCcCcHHHHHHHHHHHHHHh---CcCceEEEEECHHHHHHHHHHHH
Confidence 45688999977 22322 34455556665542 33579999999999977666655
No 27
>PLN02578 hydrolase
Probab=65.71 E-value=3.3 Score=36.64 Aligned_cols=54 Identities=24% Similarity=0.161 Sum_probs=34.0
Q ss_pred ccCCCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 28 DKASNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 28 ~~~an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+..+++-+|.| |-|.| .++.+.+..|++.. ...+++|.|+|+||..+..+|..
T Consensus 110 ~~~~~v~~~D~~-G~G~S~~~~~~~~~~~~a~~l~~~i~~~---~~~~~~lvG~S~Gg~ia~~~A~~ 172 (354)
T PLN02578 110 AKKYKVYALDLL-GFGWSDKALIEYDAMVWRDQVADFVKEV---VKEPAVLVGNSLGGFTALSTAVG 172 (354)
T ss_pred hcCCEEEEECCC-CCCCCCCcccccCHHHHHHHHHHHHHHh---ccCCeEEEEECHHHHHHHHHHHh
Confidence 345788999988 44433 12223344444322 24689999999999876666654
No 28
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=65.34 E-value=4.7 Score=33.12 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=33.3
Q ss_pred CCCceeeecCcccchH----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.| |-|-| +++.+.+..+.+. +...+++|+|+|+||..+..+|..
T Consensus 54 ~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~~~l~~~i~~---~~~~~~~lvG~S~Gg~~a~~~a~~ 115 (278)
T TIGR03056 54 SFRVVAPDLP-GHGFTRAPFRFRFTLPSMAEDLSALCAA---EGLSPDGVIGHSAGAAIALRLALD 115 (278)
T ss_pred CcEEEeecCC-CCCCCCCccccCCCHHHHHHHHHHHHHH---cCCCCceEEEECccHHHHHHHHHh
Confidence 4688889977 22222 2344445555543 233578999999999877666654
No 29
>PRK10349 carboxylesterase BioH; Provisional
Probab=62.55 E-value=3.2 Score=34.34 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=32.7
Q ss_pred cCCCceeeecCcccchHH-----HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVSN-----NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s~-----~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+...++.+|.| |.|.|. ++-+..+.... +...++.+.|+|.||.-+..+|..
T Consensus 38 ~~~~vi~~Dl~-G~G~S~~~~~~~~~~~~~~l~~----~~~~~~~lvGhS~Gg~ia~~~a~~ 94 (256)
T PRK10349 38 SHFTLHLVDLP-GFGRSRGFGALSLADMAEAVLQ----QAPDKAIWLGWSLGGLVASQIALT 94 (256)
T ss_pred cCCEEEEecCC-CCCCCCCCCCCCHHHHHHHHHh----cCCCCeEEEEECHHHHHHHHHHHh
Confidence 45789999977 666542 11122222111 233579999999999987777654
No 30
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=62.20 E-value=6.5 Score=34.56 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCceeeecCcccchH----------HHHHHHHHHHH---hhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS----------NNLYDFLQAFF---VEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s----------~~~~~fl~~f~---~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+++-+|.|- -|-| +++.+-+..++ ...+++...+++|.|+|.||..+-.++..
T Consensus 116 ~~v~~~D~~G-~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~ 182 (349)
T PLN02385 116 YGVFAMDYPG-FGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLK 182 (349)
T ss_pred CEEEEecCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHh
Confidence 5678888873 3322 12222333333 23345556689999999999877666544
No 31
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=61.77 E-value=4.2 Score=32.14 Aligned_cols=51 Identities=24% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCceeeecCcccchHH-----HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVSN-----NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s~-----~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++.+|.| |-|.|. ++-+..+...... ..++++.|+|+||..+..+|.+
T Consensus 30 ~~~vi~~d~~-G~G~s~~~~~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~~a~~~a~~ 85 (245)
T TIGR01738 30 HFTLHLVDLP-GHGRSRGFGPLSLADAAEAIAAQA----PDPAIWLGWSLGGLVALHIAAT 85 (245)
T ss_pred CeEEEEecCC-cCccCCCCCCcCHHHHHHHHHHhC----CCCeEEEEEcHHHHHHHHHHHH
Confidence 4678889976 334331 2222222222222 2589999999999887766654
No 32
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=61.27 E-value=4.7 Score=34.16 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
...++.+|.|= -|.| +++.+.|..+++.. ...+++|.|+|.||..+-.+|.+
T Consensus 55 ~~~vi~~DlpG-~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l---~~~~~~lvGhS~Gg~va~~~a~~ 122 (294)
T PLN02824 55 SHRVYAIDLLG-YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV---VGDPAFVICNSVGGVVGLQAAVD 122 (294)
T ss_pred CCeEEEEcCCC-CCCCCCCccccccccccCCHHHHHHHHHHHHHHh---cCCCeEEEEeCHHHHHHHHHHHh
Confidence 46899999773 2322 34455566666543 34689999999999977665554
No 33
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=59.09 E-value=9.2 Score=28.56 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEcccccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPH 86 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~~ 86 (208)
.+.+.|++..+..| ...+.|+|||-||-.+..++..+
T Consensus 49 ~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 49 QILDALKELVEKYP---DYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHST---TSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---CccchhhccchHHHHHHHHHHhh
Confidence 45566666666666 45799999999999776666553
No 34
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=58.11 E-value=8.3 Score=31.23 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCCceeeecCcccchH--------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS--------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s--------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.| |-|.| +++.+.+..+++. +.-.++.++|+|+||.-+-.+|..
T Consensus 27 ~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~l~~~l~~---~~~~~~~lvG~S~Gg~va~~~a~~ 86 (242)
T PRK11126 27 DYPRLYIDLP-GHGGSAAISVDGFADVSRLLSQTLQS---YNILPYWLVGYSLGGRIAMYYACQ 86 (242)
T ss_pred CCCEEEecCC-CCCCCCCccccCHHHHHHHHHHHHHH---cCCCCeEEEEECHHHHHHHHHHHh
Confidence 3678888865 33322 2344455555553 344689999999999877776665
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=57.87 E-value=7.2 Score=33.97 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+++-+|.|- .|.| .++.+.+..++.. +...++.|.|+|+||..+..+|..
T Consensus 158 ~~v~~~d~~g-~G~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lvG~S~Gg~~a~~~a~~ 217 (371)
T PRK14875 158 RPVIALDLPG-HGASSKAVGAGSLDELAAAVLAFLDA---LGIERAHLVGHSMGGAVALRLAAR 217 (371)
T ss_pred CEEEEEcCCC-CCCCCCCCCCCCHHHHHHHHHHHHHh---cCCccEEEEeechHHHHHHHHHHh
Confidence 5677788763 3333 3445555555543 344579999999999988877765
No 36
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=56.76 E-value=18 Score=32.23 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 45 SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 45 s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
++|+-..++.+|..-| .++.|.|+|-||-.+...|
T Consensus 130 ~KD~~~~i~~~fge~~----~~iilVGHSmGGaIav~~a 164 (343)
T KOG2564|consen 130 SKDFGAVIKELFGELP----PQIILVGHSMGGAIAVHTA 164 (343)
T ss_pred HHHHHHHHHHHhccCC----CceEEEeccccchhhhhhh
Confidence 4567777777764322 2599999999998654433
No 37
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=56.43 E-value=8.8 Score=33.07 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.0
Q ss_pred CCCceeeecCcccc------------hHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENG------------VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g------------~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..|++.||-+.... +++++..+|+...+.. .....+++|+|+|.||+-+-.+|..
T Consensus 66 ~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~-g~~~~~i~lIGhSlGa~vAg~~a~~ 132 (275)
T cd00707 66 DYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNT-GLSLENVHLIGHSLGAHVAGFAGKR 132 (275)
T ss_pred CCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhc-CCChHHEEEEEecHHHHHHHHHHHH
Confidence 47899999765311 1234444454443322 2334579999999999976666554
No 38
>PRK03592 haloalkane dehalogenase; Provisional
Probab=53.54 E-value=8 Score=32.73 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
...++-+|.| |-|.| ++..+.+..+++. +...+++|.|+|.||..+-.+|..
T Consensus 53 ~~~via~D~~-G~G~S~~~~~~~~~~~~a~dl~~ll~~---l~~~~~~lvGhS~Gg~ia~~~a~~ 113 (295)
T PRK03592 53 LGRCLAPDLI-GMGASDKPDIDYTFADHARYLDAWFDA---LGLDDVVLVGHDWGSALGFDWAAR 113 (295)
T ss_pred CCEEEEEcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEECHHHHHHHHHHHh
Confidence 3467778866 44443 2333445555553 234689999999999877666654
No 39
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=53.27 E-value=17 Score=32.07 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.4
Q ss_pred CCCeEEEccccccccccccc
Q 039388 64 KNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 64 ~~~~~i~geSY~G~yip~~a 83 (208)
+.|++|.|+|.||..+-.++
T Consensus 141 ~~p~~l~GhSmGg~i~~~~~ 160 (332)
T TIGR01607 141 RLPMYIIGLSMGGNIALRLL 160 (332)
T ss_pred CCceeEeeccCccHHHHHHH
Confidence 67999999999998665544
No 40
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=51.95 E-value=13 Score=33.88 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
.|+..|++.+-..+....+.|+.++|-||||...
T Consensus 94 aD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 94 ADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 5788888888777776777899999999999864
No 41
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=50.55 E-value=12 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
++...+++....+|. .+++|+|+|.||..+-.+|..
T Consensus 13 ~i~~~~~~~~~~~p~---~~i~v~GHSlGg~lA~l~a~~ 48 (153)
T cd00741 13 LVLPLLKSALAQYPD---YKIHVTGHSLGGALAGLAGLD 48 (153)
T ss_pred HHHHHHHHHHHHCCC---CeEEEEEcCHHHHHHHHHHHH
Confidence 344445555444554 479999999999966555544
No 42
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=49.35 E-value=17 Score=32.94 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=41.0
Q ss_pred ecCCCcccCCCceeeecCcccchH-------------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 22 WNDCSSDKASNLMFVDQLTENGVS-------------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 22 ~n~~sW~~~an~lfiDqPv~~g~s-------------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+|=.+-.+.-|+-.||.| |-|.| +.+.+-+++|..... =.+..|.|||+||--....|.+
T Consensus 108 ~Nf~~La~~~~vyaiDll-G~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~---L~KmilvGHSfGGYLaa~YAlK 180 (365)
T KOG4409|consen 108 RNFDDLAKIRNVYAIDLL-GFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG---LEKMILVGHSFGGYLAAKYALK 180 (365)
T ss_pred HhhhhhhhcCceEEeccc-CCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC---CcceeEeeccchHHHHHHHHHh
Confidence 455555667788899966 44443 467788888887543 2368999999999755444444
No 43
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=48.66 E-value=9.2 Score=30.15 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+++.+.+..+.+..+. .++++.|+|+||..+-.+|..
T Consensus 28 ~~~~~~~~~~~~~l~~---~~~~~vG~S~Gg~~~~~~a~~ 64 (230)
T PF00561_consen 28 DDLAADLEALREALGI---KKINLVGHSMGGMLALEYAAQ 64 (230)
T ss_dssp HHHHHHHHHHHHHHTT---SSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CCeEEEEECCChHHHHHHHHH
Confidence 5677777777775543 349999999999877666554
No 44
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=47.77 E-value=13 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=34.0
Q ss_pred CCCceeeecCcccchHH----------HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVSN----------NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s~----------~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.| |.|.|+ ...+.+..+.+. +...++++.|+|+||..+-.+|.+
T Consensus 60 ~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~~~l~~~l~~---l~~~~~~lvG~S~Gg~ia~~~a~~ 121 (282)
T TIGR03343 60 GYRVILKDSP-GFNKSDAVVMDEQRGLVNARAVKGLMDA---LDIEKAHLVGNSMGGATALNFALE 121 (282)
T ss_pred CCEEEEECCC-CCCCCCCCcCcccccchhHHHHHHHHHH---cCCCCeeEEEECchHHHHHHHHHh
Confidence 3788999976 334431 123344455443 344689999999999988776654
No 45
>PLN00413 triacylglycerol lipase
Probab=47.10 E-value=23 Score=33.43 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
++.+.|++.++.+|+. +++++|||.||..+-..|
T Consensus 269 ~i~~~Lk~ll~~~p~~---kliVTGHSLGGALAtLaA 302 (479)
T PLN00413 269 TILRHLKEIFDQNPTS---KFILSGHSLGGALAILFT 302 (479)
T ss_pred HHHHHHHHHHHHCCCC---eEEEEecCHHHHHHHHHH
Confidence 4566777877777755 699999999998654444
No 46
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=47.09 E-value=6.6 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.0
Q ss_pred hhhhccCchHHHHHhCC
Q 039388 103 IMEKFLNEKSVKDALGA 119 (208)
Q Consensus 103 ~~~~yLN~~~Vr~ALhV 119 (208)
.+-.-|++||||++|++
T Consensus 15 gl~~~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 15 GLLRALRDPDVQRGLGF 31 (42)
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 34566999999999986
No 47
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=46.94 E-value=18 Score=29.71 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCCCCCCeEEEcccccccccccccccc
Q 039388 48 LYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPH 86 (208)
Q Consensus 48 ~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~~ 86 (208)
+...++...++.| ..++.++|+|-||-.+-.+|..+
T Consensus 114 ~~~~~~~~~~~~p---~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 114 VLPELKSALKQYP---DYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHHHHHhhCC---CceEEEEccCHHHHHHHHHHHHH
Confidence 3444455555544 45799999999998665555443
No 48
>PHA02857 monoglyceride lipase; Provisional
Probab=46.21 E-value=15 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.1
Q ss_pred CCCCCeEEEccccccccccccccc
Q 039388 62 YDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 62 ~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+...+++|.|+|.||.-+..+|.+
T Consensus 94 ~~~~~~~lvG~S~GG~ia~~~a~~ 117 (276)
T PHA02857 94 YPGVPVFLLGHSMGATISILAAYK 117 (276)
T ss_pred CCCCCEEEEEcCchHHHHHHHHHh
Confidence 345689999999999866665543
No 49
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=46.19 E-value=23 Score=31.61 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=44.8
Q ss_pred cccCCCceeeecCcccch---HHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc-----cccccccCCCC
Q 039388 27 SDKASNLMFVDQLTENGV---SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP-----HYSTRKKYEGE 96 (208)
Q Consensus 27 W~~~an~lfiDqPv~~g~---s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~-----~yd~~~~c~~~ 96 (208)
.++++-||-||-|+++|= ++++.+-|. |..||+++--.+|+ .|||+-.-|.-... .+|+++-|.+|
T Consensus 67 f~enSkvI~VeGnI~sGK~klAKelAe~Lg--f~hfP~~~~d~iyv--dsyg~D~r~l~~~~p~~cr~~di~~Fy~dP 140 (393)
T KOG3877|consen 67 FHENSKVIVVEGNIGSGKTKLAKELAEQLG--FVHFPEFRMDDIYV--DSYGNDLRNLYNKFPARCRLPDISMFYKDP 140 (393)
T ss_pred hcccceEEEEeCCcccCchhHHHHHHHHhC--Ccccccccccceee--cccCccchhccccCCcccCchhHHHhccCC
Confidence 567788999999999984 455554332 57899998877776 78887543322222 56777766653
No 50
>PLN02454 triacylglycerol lipase
Probab=45.44 E-value=21 Score=33.11 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIP 80 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip 80 (208)
+++...++...+.+|..+. .++++|||.||-.+-
T Consensus 210 ~qvl~~V~~l~~~Yp~~~~-sI~vTGHSLGGALAt 243 (414)
T PLN02454 210 SQLLAKIKELLERYKDEKL-SIVLTGHSLGASLAT 243 (414)
T ss_pred HHHHHHHHHHHHhCCCCCc-eEEEEecCHHHHHHH
Confidence 3566777777777876642 699999999997443
No 51
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=45.08 E-value=19 Score=31.12 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCceeeecCc-c-----cc-------hHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLT-E-----NG-------VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv-~-----~g-------~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+|+-+|.|= | .+ +.+|+..+++.. ....++...++.|.|+|.||..+-.++..
T Consensus 88 y~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l-~~~~~~~~~~i~l~GhSmGG~ia~~~a~~ 154 (330)
T PLN02298 88 FACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSV-KQREEFQGLPRFLYGESMGGAICLLIHLA 154 (330)
T ss_pred CEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHH-HhcccCCCCCEEEEEecchhHHHHHHHhc
Confidence 6889999883 1 11 234555555433 22233445589999999999876655543
No 52
>PLN02965 Probable pheophorbidase
Probab=44.86 E-value=19 Score=29.86 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCceeeecCc--------ccchH-HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLT--------ENGVS-NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv--------~~g~s-~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..++=+|.|= +..++ +++.+-+..++...+ ..++++|.|+|+||..+..+|..
T Consensus 31 ~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~--~~~~~~lvGhSmGG~ia~~~a~~ 92 (255)
T PLN02965 31 FKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLP--PDHKVILVGHSIGGGSVTEALCK 92 (255)
T ss_pred ceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcC--CCCCEEEEecCcchHHHHHHHHh
Confidence 4567788643 11121 234444555555432 12589999999999877777664
No 53
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=43.40 E-value=20 Score=33.52 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCCceeeecCcccc------------hHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENG------------VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g------------~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..|+|-+|-|-... ++.++.++++...... .+.-.+++|.|+|.||+-+-.+|.+
T Consensus 73 d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~-gl~l~~VhLIGHSLGAhIAg~ag~~ 139 (442)
T TIGR03230 73 SANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEF-NYPWDNVHLLGYSLGAHVAGIAGSL 139 (442)
T ss_pred CCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhh-CCCCCcEEEEEECHHHHHHHHHHHh
Confidence 36899999874211 2234555554433222 2445689999999999966554443
No 54
>PRK10749 lysophospholipase L2; Provisional
Probab=43.18 E-value=14 Score=32.30 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.4
Q ss_pred CCCCeEEEccccccccccccccc
Q 039388 63 DKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 63 ~~~~~~i~geSY~G~yip~~a~~ 85 (208)
...++++.|+|.||..+-.++..
T Consensus 129 ~~~~~~l~GhSmGG~ia~~~a~~ 151 (330)
T PRK10749 129 PYRKRYALAHSMGGAILTLFLQR 151 (330)
T ss_pred CCCCeEEEEEcHHHHHHHHHHHh
Confidence 45689999999999876554543
No 55
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=42.95 E-value=16 Score=28.78 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCceeeecCcccchH---------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS---------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s---------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..+++-+|.|= .|.| ++..+-+..+.+.. ...++.|.|+|+||..+-.+|..
T Consensus 39 ~~~v~~~d~~G-~G~s~~~~~~~~~~~~~~~~~~~i~~~---~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 39 DFRVLRYDKRG-HGLSDAPEGPYSIEDLADDVLALLDHL---GIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred ccEEEEecCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHh---CCCceEEEEeCchHHHHHHHHHH
Confidence 45788888763 2222 23344444444432 33579999999999987766655
No 56
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=42.54 E-value=15 Score=36.64 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAF 82 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~ 82 (208)
+|.....+.+.+.+ ......+.|+|-||||-..-.+
T Consensus 590 ~D~~~~~~~~~~~~-~iD~~ri~i~GwSyGGy~t~~~ 625 (755)
T KOG2100|consen 590 KDQIEAVKKVLKLP-FIDRSRVAIWGWSYGGYLTLKL 625 (755)
T ss_pred HHHHHHHHHHHhcc-cccHHHeEEeccChHHHHHHHH
Confidence 56666666666655 4455579999999999754433
No 57
>PLN02571 triacylglycerol lipase
Probab=42.44 E-value=25 Score=32.55 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPA 81 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~ 81 (208)
+++...++.+.+.+|.. ..+++++|||.||-.+-.
T Consensus 208 ~qvl~eV~~L~~~y~~e-~~sI~VTGHSLGGALAtL 242 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDE-EISITICGHSLGAALATL 242 (413)
T ss_pred HHHHHHHHHHHHhcCcc-cccEEEeccchHHHHHHH
Confidence 35667777888877765 347999999999985533
No 58
>PLN02442 S-formylglutathione hydrolase
Probab=42.06 E-value=25 Score=30.12 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
++-..+..++. .....+++|+|.|+||.-+-.++..
T Consensus 128 ~l~~~i~~~~~---~~~~~~~~i~G~S~GG~~a~~~a~~ 163 (283)
T PLN02442 128 ELPKLLSDNFD---QLDTSRASIFGHSMGGHGALTIYLK 163 (283)
T ss_pred HHHHHHHHHHH---hcCCCceEEEEEChhHHHHHHHHHh
Confidence 34344444433 3445679999999999865555544
No 59
>PRK10566 esterase; Provisional
Probab=41.88 E-value=20 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=22.8
Q ss_pred HHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 54 AFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 54 ~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.++...+.....++.|+|+|.||..+-.++..
T Consensus 96 ~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~ 127 (249)
T PRK10566 96 AAIREEGWLLDDRLAVGGASMGGMTALGIMAR 127 (249)
T ss_pred HHHHhcCCcCccceeEEeecccHHHHHHHHHh
Confidence 33444444556789999999999988766644
No 60
>PLN02934 triacylglycerol lipase
Probab=41.25 E-value=27 Score=33.23 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
.+...|+.+++.+|.+ +++++|||-||-.+-..|
T Consensus 306 ~v~~~lk~ll~~~p~~---kIvVTGHSLGGALAtLaA 339 (515)
T PLN02934 306 AVRSKLKSLLKEHKNA---KFVVTGHSLGGALAILFP 339 (515)
T ss_pred HHHHHHHHHHHHCCCC---eEEEeccccHHHHHHHHH
Confidence 4667788888888875 699999999998554443
No 61
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=41.15 E-value=13 Score=31.23 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=34.8
Q ss_pred CcccCCCceeeecCcccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 26 SSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 26 sW~~~an~lfiDqPv~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.|.+..+|.|-+ ++.. -+...++++...+.+|+ +++++|||-||..+-..|..
T Consensus 52 ~W~ed~~~~~~~-~~~~--q~~A~~yl~~~~~~~~~----~i~v~GHSkGGnLA~yaa~~ 104 (224)
T PF11187_consen 52 DWKEDFNMSFQD-ETPQ--QKSALAYLKKIAKKYPG----KIYVTGHSKGGNLAQYAAAN 104 (224)
T ss_pred hHHHHHHhhcCC-CCHH--HHHHHHHHHHHHHhCCC----CEEEEEechhhHHHHHHHHH
Confidence 588878877653 2211 23455677777766654 59999999999865544443
No 62
>PLN02162 triacylglycerol lipase
Probab=41.02 E-value=26 Score=33.07 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=21.3
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEccccccccccc
Q 039388 49 YDFLQAFFVEHPCYDKNDFYITGESYAGHYIPA 81 (208)
Q Consensus 49 ~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~ 81 (208)
.+.|+..+.++|.+ +++++|||.||-.+--
T Consensus 265 ~~~L~~lL~k~p~~---kliVTGHSLGGALAtL 294 (475)
T PLN02162 265 RQMLRDKLARNKNL---KYILTGHSLGGALAAL 294 (475)
T ss_pred HHHHHHHHHhCCCc---eEEEEecChHHHHHHH
Confidence 34456666666654 6999999999985433
No 63
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=40.61 E-value=18 Score=31.74 Aligned_cols=53 Identities=19% Similarity=0.088 Sum_probs=33.2
Q ss_pred cCCCceeeecCcccchH-------HHHHHHHHHHHhhCCCCCC-CCeEEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS-------NNLYDFLQAFFVEHPCYDK-NDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s-------~~~~~fl~~f~~~~p~~~~-~~~~i~geSY~G~yip~~a~~ 85 (208)
+...++-+|.| |-|-| .++.+-|..+++.. .- +.+.|+|+|+||..+-.+|.+
T Consensus 98 ~~~~Vi~~Dl~-G~g~s~~~~~~~~~~a~dl~~ll~~l---~l~~~~~lvG~SmGG~vA~~~A~~ 158 (343)
T PRK08775 98 ARFRLLAFDFI-GADGSLDVPIDTADQADAIALLLDAL---GIARLHAFVGYSYGALVGLQFASR 158 (343)
T ss_pred cccEEEEEeCC-CCCCCCCCCCCHHHHHHHHHHHHHHc---CCCcceEEEEECHHHHHHHHHHHH
Confidence 34578899988 43311 33444455555432 22 346799999999877776665
No 64
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=39.57 E-value=20 Score=31.84 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCceeeecCcccc---------hH-HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 30 ASNLMFVDQLTENG---------VS-NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 30 ~an~lfiDqPv~~g---------~s-~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
...++-+|.|= -| ++ ++..+.+..+++. +...+++|.|+|.||..+-.++
T Consensus 114 ~~~via~Dl~G-~G~S~~~~~~~~~~~~~a~~l~~~l~~---l~~~~~~lvGhS~Gg~ia~~~a 173 (360)
T PLN02679 114 NYTVYAIDLLG-FGASDKPPGFSYTMETWAELILDFLEE---VVQKPTVLIGNSVGSLACVIAA 173 (360)
T ss_pred CCEEEEECCCC-CCCCCCCCCccccHHHHHHHHHHHHHH---hcCCCeEEEEECHHHHHHHHHH
Confidence 45778899772 22 22 2344445555543 2345899999999997554444
No 65
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=39.25 E-value=17 Score=26.75 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCceeeecCcccchH--HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS--NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 31 an~lfiDqPv~~g~s--~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.+++.+|.|-...-. .++-+++...-...+ ..++++|+|.|.||..+..++..
T Consensus 27 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~~~~ 81 (145)
T PF12695_consen 27 YAVVAFDYPGHGDSDGADAVERVLADIRAGYP--DPDRIILIGHSMGGAIAANLAAR 81 (145)
T ss_dssp EEEEEESCTTSTTSHHSHHHHHHHHHHHHHHC--TCCEEEEEEETHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCccchhHHHHHHHHHHHhhcC--CCCcEEEEEEccCcHHHHHHhhh
Confidence 456667766533221 233333333323233 55689999999999987776664
No 66
>PLN02408 phospholipase A1
Probab=38.19 E-value=36 Score=31.06 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
+++.+-++...+.+|.. ...+.++|||.||-.+
T Consensus 182 ~qVl~eI~~ll~~y~~~-~~sI~vTGHSLGGALA 214 (365)
T PLN02408 182 EMVREEIARLLQSYGDE-PLSLTITGHSLGAALA 214 (365)
T ss_pred HHHHHHHHHHHHhcCCC-CceEEEeccchHHHHH
Confidence 35667778888888765 2369999999999844
No 67
>COG4425 Predicted membrane protein [Function unknown]
Probab=36.58 E-value=45 Score=31.56 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=38.3
Q ss_pred eeeecCcccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccccccccc
Q 039388 34 MFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRK 91 (208)
Q Consensus 34 lfiDqPv~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~~yd~~~ 91 (208)
+++|.--+...++.+++.+-......|+-+.-++|+.|||.|..=.-.-...++|+..
T Consensus 366 llvdpdyg~~aa~aLf~aVy~yw~qLP~~sRPKLylhG~SLGa~~s~~~s~dl~dvl~ 423 (588)
T COG4425 366 LLVDPDYGADAARALFEAVYGYWTQLPKSSRPKLYLHGESLGAMGSEAPSMDLFDVLG 423 (588)
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHhCCcCCCCceEEeccccccccCccccccHHHHHh
Confidence 3444323444567788999899999999888789999999985422222223455443
No 68
>PRK05855 short chain dehydrogenase; Validated
Probab=36.24 E-value=37 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=27.0
Q ss_pred cCCCceeeecCcccchH-----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 29 KASNLMFVDQLTENGVS-----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s-----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
+...++-+|.| |.|.| +++.+-+..+.+... ...|++|+|+|+||..+
T Consensus 50 ~~~~Vi~~D~~-G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~--~~~~~~lvGhS~Gg~~a 108 (582)
T PRK05855 50 DRFRVVAYDVR-GAGRSSAPKRTAAYTLARLADDFAAVIDAVS--PDRPVHLLAHDWGSIQG 108 (582)
T ss_pred cceEEEEecCC-CCCCCCCCCcccccCHHHHHHHHHHHHHHhC--CCCcEEEEecChHHHHH
Confidence 34567888877 34433 122233333333221 13469999999999543
No 69
>PLN02511 hydrolase
Probab=35.48 E-value=39 Score=30.48 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCCceeeecCc-c-----------cchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 30 ASNLMFVDQLT-E-----------NGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 30 ~an~lfiDqPv-~-----------~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
-.+++-+|.|- | .+..+|+..+++..-..+| +.+++++|+|.||.-+-.++
T Consensus 129 g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~---~~~~~lvG~SlGg~i~~~yl 191 (388)
T PLN02511 129 GWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYP---SANLYAAGWSLGANILVNYL 191 (388)
T ss_pred CCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCC---CCCEEEEEechhHHHHHHHH
Confidence 45677788764 1 1445788777777666555 45899999999997654443
No 70
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.37 E-value=47 Score=29.32 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.2
Q ss_pred ccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccc
Q 039388 41 ENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGH 77 (208)
Q Consensus 41 ~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~ 77 (208)
....++.|++.+..-....|+=+.-++|+.|||-|..
T Consensus 85 a~~a~~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~ 121 (289)
T PF10081_consen 85 AREAARALFEAVYARWSTLPEDRRPKLYLYGESLGAY 121 (289)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCeEEEeccCcccc
Confidence 3344567888888888888887766799999999854
No 71
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=56 Score=28.47 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred CCCcccCCCc------eeeecCcccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccccccccccCCCC
Q 039388 24 DCSSDKASNL------MFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGE 96 (208)
Q Consensus 24 ~~sW~~~an~------lfiDqPv~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~~yd~~~~c~~~ 96 (208)
+..|-+..|+ +||=||+...+|+.+. -+++-.-.+--++|+|+.=.|=||.-.+.+| +||.-+-|..+
T Consensus 79 ~~~~~Di~s~LlreRIi~lg~~Idd~va~~vi---aqlL~Ld~ed~~K~I~lyINSPGG~vtaglA--IYDtMq~ik~~ 152 (275)
T KOG0840|consen 79 RERPYDIYSRLLRERIVFLGQPIDDDVANLVI---AQLLYLDSEDPKKPIYLYINSPGGSVTAGLA--IYDTMQYIKPD 152 (275)
T ss_pred CCCcccHHHHHHHhheeeeCCcCcHHHHHHHH---HHHHHhhccCCCCCeEEEEeCCCCccchhhh--HHHHHHhhCCC
Confidence 3455555554 5688888888887654 3444444555678999999999999766555 77877767654
No 72
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=33.10 E-value=40 Score=31.19 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 43 GVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 43 g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
|..+|+-.+++.--++||+ .+++.+|.|+||..+
T Consensus 179 g~t~Dl~~~v~~i~~~~P~---a~l~avG~S~Gg~iL 212 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQ---APLFAVGFSMGGNIL 212 (409)
T ss_pred CCHHHHHHHHHHHHHhCCC---CceEEEEecchHHHH
Confidence 3447888888777778885 489999999999754
No 73
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=31.21 E-value=52 Score=30.41 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCeEEEccccccc
Q 039388 45 SNNLYDFLQAFFVEHPCYDK-NDFYITGESYAGH 77 (208)
Q Consensus 45 s~~~~~fl~~f~~~~p~~~~-~~~~i~geSY~G~ 77 (208)
|-|...+|..-.+.+|.... .|..+.|.||||-
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~y 196 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGY 196 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHH
Confidence 56888888888888999985 8999999999974
No 74
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=30.55 E-value=60 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCceeeecCcccchH-----------HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 31 SNLMFVDQLTENGVS-----------NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 31 an~lfiDqPv~~g~s-----------~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
.+++-+|.| |-|-| +|+..+++.+-+..|.+ .++.+.|+|.||..+-.+|
T Consensus 58 ~~v~~~Dl~-G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~--~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 58 FPVLRFDYR-GMGDSEGENLGFEGIDADIAAAIDAFREAAPHL--RRIVAWGLCDAASAALLYA 118 (274)
T ss_pred CEEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCC--CcEEEEEECHHHHHHHHHh
Confidence 578888877 44432 46666666554444544 3599999999997654444
No 75
>PLN02719 triacylglycerol lipase
Probab=30.52 E-value=48 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCeEEEccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCY--DKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~--~~~~~~i~geSY~G~yip~~a 83 (208)
+++...++...+.+|.. ....+.|+|+|.||-.+-..|
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA 316 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSA 316 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHH
Confidence 45777788878888864 334699999999998544333
No 76
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=30.04 E-value=27 Score=31.21 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCceeeecCcccc------------hHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENG------------VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g------------~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
..|||-||--.+.. +++.+-+||+...... ......++|.|+|.|+|-+=..+.+
T Consensus 104 d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~-g~~~~~ihlIGhSLGAHvaG~aG~~ 170 (331)
T PF00151_consen 104 DYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNF-GVPPENIHLIGHSLGAHVAGFAGKY 170 (331)
T ss_dssp -EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH----GGGEEEEEETCHHHHHHHHHHH
T ss_pred CceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhc-CCChhHEEEEeeccchhhhhhhhhh
Confidence 56888888655322 1234445555554322 2334579999999998855444444
No 77
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=28.91 E-value=65 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
+++.++|+++-+.+|++.+ +...|.|+-|+-|+.+-
T Consensus 10 ~ei~~~l~~la~~~p~~v~--~~~IG~S~eGR~i~~l~ 45 (300)
T cd03871 10 ETIEAWTEQVASENPDLIS--RSQIGTTFEGRPIYLLK 45 (300)
T ss_pred HHHHHHHHHHHHHCCCceE--EEEeeeCCCCCeeEEEE
Confidence 5788999999999998865 77789999999888663
No 78
>PLN02324 triacylglycerol lipase
Probab=28.60 E-value=58 Score=30.22 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIP 80 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip 80 (208)
+++..-++...+.+|... ..+.++|||.||-.+-
T Consensus 197 eqVl~eV~~L~~~Yp~e~-~sItvTGHSLGGALAt 230 (415)
T PLN02324 197 EQVQGELKRLLELYKNEE-ISITFTGHSLGAVMSV 230 (415)
T ss_pred HHHHHHHHHHHHHCCCCC-ceEEEecCcHHHHHHH
Confidence 456677777777777532 3699999999998443
No 79
>PLN02753 triacylglycerol lipase
Probab=28.31 E-value=56 Score=31.29 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCC--CCCCCeEEEccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPC--YDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~--~~~~~~~i~geSY~G~yip~~a 83 (208)
+++...++.....+|. .....+.|+|+|.||-.+-..|
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA 330 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSA 330 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHH
Confidence 4567778888877764 2345799999999998544333
No 80
>PLN02847 triacylglycerol lipase
Probab=27.88 E-value=62 Score=31.58 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 48 LYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 48 ~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+...|++-+..+|.| ++.|+|||.||--+-.++..
T Consensus 237 i~~~L~kal~~~PdY---kLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 237 STPCLLKALDEYPDF---KIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHCCCC---eEEEeccChHHHHHHHHHHH
Confidence 334455556667776 68999999999855544433
No 81
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=27.64 E-value=44 Score=30.46 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEcccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFAS 84 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~ 84 (208)
+|+..+++..-..+| ..+++|+|+|.||.-+..++.
T Consensus 192 ~Dl~~~l~~l~~~~~---~~~i~lvGhSmGG~ial~~a~ 227 (395)
T PLN02652 192 EDTEAFLEKIRSENP---GVPCFLFGHSTGGAVVLKAAS 227 (395)
T ss_pred HHHHHHHHHHHHhCC---CCCEEEEEECHHHHHHHHHHh
Confidence 455556655544444 348999999999987655443
No 82
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=27.19 E-value=43 Score=27.10 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
.++.++++...+.++ ....+++|.|+|.||..+-.++..
T Consensus 77 ~~~~~~i~~~~~~~~-id~~~i~l~G~S~Gg~~a~~~a~~ 115 (212)
T TIGR01840 77 ESLHQLIDAVKANYS-IDPNRVYVTGLSAGGGMTAVLGCT 115 (212)
T ss_pred HHHHHHHHHHHHhcC-cChhheEEEEECHHHHHHHHHHHh
Confidence 344455554444332 344579999999999876555544
No 83
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=26.28 E-value=48 Score=31.36 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+|+.++++ |+...|.- ..++.+.|.||||...-.+|..
T Consensus 80 ~D~~~~i~-~l~~q~~~-~~~v~~~G~S~GG~~a~~~a~~ 117 (550)
T TIGR00976 80 ADGYDLVD-WIAKQPWC-DGNVGMLGVSYLAVTQLLAAVL 117 (550)
T ss_pred hHHHHHHH-HHHhCCCC-CCcEEEEEeChHHHHHHHHhcc
Confidence 56666555 66655533 4589999999999765555443
No 84
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=66 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCCC---CCCeEEEccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYD---KNDFYITGESYAGHYI 79 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~---~~~~~i~geSY~G~yi 79 (208)
.|...-++..++.-+||+ ..++.|.|||+||.-+
T Consensus 160 ~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVA 196 (973)
T KOG3724|consen 160 NDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVA 196 (973)
T ss_pred HHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHH
Confidence 344455566666667777 5569999999999843
No 85
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=26.16 E-value=78 Score=28.63 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHhhCCCCCCCCeEEEcccccccc
Q 039388 43 GVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHY 78 (208)
Q Consensus 43 g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~y 78 (208)
|-++|+..+|..--..+| .+++|.+|-|.||..
T Consensus 129 G~t~D~~~~l~~l~~~~~---~r~~~avG~SLGgnm 161 (345)
T COG0429 129 GETEDIRFFLDWLKARFP---PRPLYAVGFSLGGNM 161 (345)
T ss_pred cchhHHHHHHHHHHHhCC---CCceEEEEecccHHH
Confidence 556788777777666565 569999999999954
No 86
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=25.94 E-value=46 Score=30.46 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCceeeecCccc------chHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTEN------GVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~------g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
...+|.+|-.+.. .|-.++.+.+..+-..-.+-...++.|.|+|-||+-+-++..+
T Consensus 154 ~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~Lqy 215 (374)
T PF10340_consen 154 EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQY 215 (374)
T ss_pred CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHH
Confidence 3388999988755 3445666666554433212234579999999999988777666
No 87
>PRK06489 hypothetical protein; Provisional
Probab=25.87 E-value=29 Score=30.64 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred cCCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCCCCCe-EEEccccccccccccccc
Q 039388 29 KASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYDKNDF-YITGESYAGHYIPAFASP 85 (208)
Q Consensus 29 ~~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~~~~~-~i~geSY~G~yip~~a~~ 85 (208)
+...++-+|.| |.|.| +++.+.+..++.. ++.-.++ +|+|+|.||.-+-.+|.+
T Consensus 104 ~~~~Via~Dl~-GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~--~lgi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 104 SKYFIILPDGI-GHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTE--GLGVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred cCCEEEEeCCC-CCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHH--hcCCCceeEEEEECHHHHHHHHHHHh
Confidence 44688999987 44433 2333333343322 1222356 489999999877666654
No 88
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.64 E-value=37 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.0
Q ss_pred CeEEEccccccccccccccccc
Q 039388 66 DFYITGESYAGHYIPAFASPHY 87 (208)
Q Consensus 66 ~~~i~geSY~G~yip~~a~~~y 87 (208)
|+.|+|.|+||..+=.+|.++-
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le 88 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLE 88 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHH
T ss_pred CeeehccCccHHHHHHHHHHHH
Confidence 9999999999998877877753
No 89
>PRK03204 haloalkane dehalogenase; Provisional
Probab=25.34 E-value=34 Score=29.13 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.5
Q ss_pred EecCcEEEEEeeeccccceecCccccCcCC
Q 039388 179 SYRLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 179 ~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
...+.++.. |.+|||+++.+
T Consensus 253 ~ip~~~~~~----------i~~aGH~~~~e 272 (286)
T PRK03204 253 TFPDHVLVE----------LPNAKHFIQED 272 (286)
T ss_pred hcCCCeEEE----------cCCCccccccc
Confidence 345789999 99999999864
No 90
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=23.95 E-value=57 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.1
Q ss_pred cCcEEEEEeeeccccceecCccccCcCC
Q 039388 181 RLLTLLRIYFCLFIENEVHNSGHMVPTG 208 (208)
Q Consensus 181 ~~ltf~~~~~~~~~~~~V~~AGHmvP~d 208 (208)
.+..++. |.+|||+++.+
T Consensus 250 ~~~~~~~----------i~~agH~~~~e 267 (282)
T TIGR03343 250 PDAQLHV----------FSRCGHWAQWE 267 (282)
T ss_pred CCCEEEE----------eCCCCcCCccc
Confidence 4788888 99999998764
No 91
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=23.84 E-value=45 Score=28.97 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCCeEEEccccccccccccccc
Q 039388 64 KNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 64 ~~~~~i~geSY~G~yip~~a~~ 85 (208)
..|.|..|+|+||+-+=-++..
T Consensus 104 ~~P~y~vgHS~GGqa~gL~~~~ 125 (281)
T COG4757 104 GHPLYFVGHSFGGQALGLLGQH 125 (281)
T ss_pred CCceEEeeccccceeecccccC
Confidence 5689999999999976544444
No 92
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=23.26 E-value=61 Score=29.40 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
+.+..|++..+.--+..++++.|.|||.||.++-.+-
T Consensus 101 ~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl 137 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFL 137 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHH
Confidence 3445555555432223378999999999998764433
No 93
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=22.91 E-value=61 Score=20.45 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.0
Q ss_pred hcCCcceeeeCCEeeeEEEEecCcEEEE
Q 039388 160 EVALTAPFKVDGAKAGQMKSYRLLTLLR 187 (208)
Q Consensus 160 ~~a~~~~~~v~g~~~G~~k~~~~ltf~~ 187 (208)
++..|.+|..||+.+|..-+..++.=++
T Consensus 4 qn~GW~~~v~~G~~aGT~G~~lriEAi~ 31 (46)
T smart00728 4 QNIGWQNWVSDGAIAGTVGQGLRIEAIK 31 (46)
T ss_pred ccCcccccccCCeEcccCCCCceeEEEE
Confidence 4567889999999999876665555555
No 94
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=22.77 E-value=66 Score=26.52 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCeEEEccccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPA 81 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~ 81 (208)
+.+.+.|.+..+..+.- .+++-+.|+|.||.++=.
T Consensus 60 ~rL~~eI~~~~~~~~~~-~~~IsfIgHSLGGli~r~ 94 (217)
T PF05057_consen 60 ERLAEEILEHIKDYESK-IRKISFIGHSLGGLIARY 94 (217)
T ss_pred HHHHHHHHHhccccccc-cccceEEEecccHHHHHH
Confidence 45556666655544433 468999999999987643
No 95
>PLN02761 lipase class 3 family protein
Probab=22.56 E-value=82 Score=30.17 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCC---CCCCeEEEcccccccccc
Q 039388 46 NNLYDFLQAFFVEHPCY---DKNDFYITGESYAGHYIP 80 (208)
Q Consensus 46 ~~~~~fl~~f~~~~p~~---~~~~~~i~geSY~G~yip 80 (208)
+++...++.....+|.. ....+.++|||.||-.+-
T Consensus 272 ~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAt 309 (527)
T PLN02761 272 EQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLAL 309 (527)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHH
Confidence 35667777777777532 223599999999998543
No 96
>PRK10985 putative hydrolase; Provisional
Probab=22.49 E-value=1e+02 Score=26.74 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 45 SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 45 s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
.+|+..+++.--+.+| ..+++++|+|.||..+
T Consensus 114 ~~D~~~~i~~l~~~~~---~~~~~~vG~S~GG~i~ 145 (324)
T PRK10985 114 TEDARFFLRWLQREFG---HVPTAAVGYSLGGNML 145 (324)
T ss_pred hHHHHHHHHHHHHhCC---CCCEEEEEecchHHHH
Confidence 3565555544333343 4579999999999744
No 97
>PLN02802 triacylglycerol lipase
Probab=22.03 E-value=88 Score=29.85 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEcccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIP 80 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip 80 (208)
++.+-++.+++.+|.- ...++|+|||.||-..-
T Consensus 313 qVl~eV~~Ll~~Y~~e-~~sI~VTGHSLGGALAt 345 (509)
T PLN02802 313 SVVGEVRRLMEKYKGE-ELSITVTGHSLGAALAL 345 (509)
T ss_pred HHHHHHHHHHHhCCCC-cceEEEeccchHHHHHH
Confidence 4555666777666532 23699999999998543
No 98
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=21.93 E-value=1.2e+02 Score=24.63 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=28.4
Q ss_pred cCCCceeeecCcc---------cchHH----HHHHHHHHHHhhCCCCCCCCeEEEccccccccc
Q 039388 29 KASNLMFVDQLTE---------NGVSN----NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYI 79 (208)
Q Consensus 29 ~~an~lfiDqPv~---------~g~s~----~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yi 79 (208)
+.|-|.|++-..+ .++++ +|.+|++..=..+ -..-.+-+.|||||..-+
T Consensus 62 ~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f~~gl~a~~--~~~~~~tv~GHSYGS~v~ 123 (177)
T PF06259_consen 62 SVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARFLDGLRATH--GPDAHLTVVGHSYGSTVV 123 (177)
T ss_pred CeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHHHHHhhhhc--CCCCCEEEEEecchhHHH
Confidence 5567788744333 22333 4555555544444 112358899999998744
No 99
>PLN02310 triacylglycerol lipase
Probab=21.85 E-value=84 Score=29.10 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhCCC-CCCCCeEEEcccccccccc
Q 039388 47 NLYDFLQAFFVEHPC-YDKNDFYITGESYAGHYIP 80 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~-~~~~~~~i~geSY~G~yip 80 (208)
++...++.....+++ -....+.|+|||.||-.+-
T Consensus 190 qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAt 224 (405)
T PLN02310 190 QVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALAL 224 (405)
T ss_pred HHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHH
Confidence 344555666555543 2234699999999998543
No 100
>PLN03037 lipase class 3 family protein; Provisional
Probab=21.73 E-value=84 Score=30.09 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhCCCC-CCCCeEEEccccccccc
Q 039388 47 NLYDFLQAFFVEHPCY-DKNDFYITGESYAGHYI 79 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~-~~~~~~i~geSY~G~yi 79 (208)
++..-+++..+.+++. ....++|+|||.||-.+
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALA 332 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALA 332 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHH
Confidence 3445566666666642 23469999999999754
No 101
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=21.27 E-value=35 Score=30.29 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 47 NLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 47 ~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
+..+-++.+.. ++...+++|.|+||||..+-.+|..
T Consensus 113 ~~v~~i~~~~~---~~~~~~~~lvghS~Gg~va~~~Aa~ 148 (326)
T KOG1454|consen 113 ELVELIRRFVK---EVFVEPVSLVGHSLGGIVALKAAAY 148 (326)
T ss_pred HHHHHHHHHHH---hhcCcceEEEEeCcHHHHHHHHHHh
Confidence 34444555544 5566789999999999877666655
No 102
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=21.08 E-value=1.1e+02 Score=24.20 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCceeeecCcccchHHHHHHHHHHHHhhCCCCCCCCeEEEccccccccccccc
Q 039388 31 SNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFA 83 (208)
Q Consensus 31 an~lfiDqPv~~g~s~~~~~fl~~f~~~~p~~~~~~~~i~geSY~G~yip~~a 83 (208)
.++|||..|+..+.++++...|...-... ...++.|.=.|.||...+.++
T Consensus 9 ~r~i~i~g~I~~~~~~~i~~~l~~~~~~~---~~~~i~l~inSpGG~v~~~~~ 58 (171)
T cd07017 9 ERIIFLGGPIDDEVANLIIAQLLYLESED---PKKPIYLYINSPGGSVTAGLA 58 (171)
T ss_pred CcEEEEcCEEcHHHHHHHHHHHHHHHccC---CCCceEEEEECCCCCHHHHHH
Confidence 36899999999888877766666554322 245788888999997655543
No 103
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=20.74 E-value=73 Score=26.96 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=18.3
Q ss_pred CCCCCeEEEccccccccccccccc
Q 039388 62 YDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 62 ~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
....+++|+|+|.||.-+-.++..
T Consensus 135 ~~~~~~~~~G~S~GG~~a~~~a~~ 158 (275)
T TIGR02821 135 LDGERQGITGHSMGGHGALVIALK 158 (275)
T ss_pred CCCCceEEEEEChhHHHHHHHHHh
Confidence 445679999999999876666554
No 104
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=20.56 E-value=1e+02 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHhhCCCCCC
Q 039388 43 GVSNNLYDFLQAFFVEHPCYDK 64 (208)
Q Consensus 43 g~s~~~~~fl~~f~~~~p~~~~ 64 (208)
..-+++++.++.|++.||....
T Consensus 5 eiPe~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 5 EIPEDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred cccHHHHHHHHHHHHcCCCchH
Confidence 3457899999999999998754
No 105
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=20.12 E-value=66 Score=30.31 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCceeeecCcccchH----------HHHHHHH-HHHHhhCCCCCCCCeEEEccccccccccccccc
Q 039388 30 ASNLMFVDQLTENGVS----------NNLYDFL-QAFFVEHPCYDKNDFYITGESYAGHYIPAFASP 85 (208)
Q Consensus 30 ~an~lfiDqPv~~g~s----------~~~~~fl-~~f~~~~p~~~~~~~~i~geSY~G~yip~~a~~ 85 (208)
...++-+|.|- -|-| +++.+.+ +.+++. +...+++|.|+|.||..+-.+|..
T Consensus 232 ~yrVia~Dl~G-~G~S~~p~~~~ytl~~~a~~l~~~ll~~---lg~~k~~LVGhSmGG~iAl~~A~~ 294 (481)
T PLN03087 232 TYRLFAVDLLG-FGRSPKPADSLYTLREHLEMIERSVLER---YKVKSFHIVAHSLGCILALALAVK 294 (481)
T ss_pred CCEEEEECCCC-CCCCcCCCCCcCCHHHHHHHHHHHHHHH---cCCCCEEEEEECHHHHHHHHHHHh
Confidence 45788899874 2222 2333444 244443 334579999999999987766654
Done!