Query 039390
Match_columns 263
No_of_seqs 225 out of 1185
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 8E-25 2.7E-29 160.7 6.2 62 154-215 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 90.4 0.21 7.3E-06 38.0 3.4 28 151-180 3-31 (77)
3 1u3e_M HNH homing endonuclease 79.5 0.28 9.7E-06 40.7 -0.7 38 156-196 109-146 (174)
4 1z1b_A Integrase; protein-DNA 76.4 3.4 0.00012 35.7 5.2 42 157-202 14-55 (356)
5 3jtz_A Integrase; four strande 51.8 29 0.00099 25.9 5.5 44 159-202 28-75 (88)
6 3ju0_A Phage integrase; four s 33.3 67 0.0023 24.9 5.1 48 159-206 28-80 (108)
7 2ftc_I Mitochondrial ribosomal 32.0 63 0.0022 25.7 4.8 37 165-203 78-114 (118)
8 1x60_A Sporulation-specific N- 29.6 30 0.001 24.3 2.3 23 178-200 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 27.8 44 0.0015 23.7 3.0 24 177-200 45-68 (81)
10 1b69_A Protein (integrase); in 25.8 51 0.0017 24.3 3.0 22 153-174 9-30 (69)
11 2bn8_A CEDA, cell division act 20.2 53 0.0018 24.9 2.1 42 152-196 36-77 (87)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=8e-25 Score=160.72 Aligned_cols=62 Identities=76% Similarity=1.257 Sum_probs=58.1
Q ss_pred CCeeeeEECCCCeEEEEEeCCCC-CeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 039390 154 RKYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDTAEDAARAYDEAALRFRGNKAKLNFPENV 215 (263)
Q Consensus 154 S~YRGVr~r~~GKW~A~I~~p~~-gkri~LGtFdT~EEAArAYD~AAl~l~G~~A~lNFP~~~ 215 (263)
.+||||++++||||+|+|++|.+ |+++|||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 36999998889999999999874 799999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.40 E-value=0.21 Score=37.97 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCCCCeeee-EECCCCeEEEEEeCCCCCeeE
Q 039390 151 EPRRKYRGV-RQRPWGKWAAEIRDPFKAARV 180 (263)
Q Consensus 151 ~~tS~YRGV-r~r~~GKW~A~I~~p~~gkri 180 (263)
...|+|+|| |..+.+.|.|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 467999999 56668999999998 66654
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=79.52 E-value=0.28 Score=40.69 Aligned_cols=38 Identities=5% Similarity=-0.105 Sum_probs=29.6
Q ss_pred eeeeEECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHH
Q 039390 156 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYD 196 (263)
Q Consensus 156 YRGVr~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD 196 (263)
++||.....++|.+.|.. . +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 467733334678999988 5 6678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=76.36 E-value=3.4 Score=35.67 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=31.7
Q ss_pred eeeEECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHHHHHHhh
Q 039390 157 RGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRF 202 (263)
Q Consensus 157 RGVr~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD~AAl~l 202 (263)
.||++++.|.|..++.. +|+++.||. +..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 35777777999987765 888999996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=51.81 E-value=29 Score=25.93 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=31.0
Q ss_pred eEECCCC--eEEEEEeCCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 039390 159 VRQRPWG--KWAAEIRDPFKAARVWLGTFD--TAEDAARAYDEAALRF 202 (263)
Q Consensus 159 Vr~r~~G--KW~A~I~~p~~gkri~LGtFd--T~EEAArAYD~AAl~l 202 (263)
|+-.+.| .|.-+.+..++.+++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3455544 599888875556678999997 5888877777665444
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=33.33 E-value=67 Score=24.85 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=31.6
Q ss_pred eEECCCC--eEEEEEeCCCCCeeEeccCCC--CHHHHHHHHHHHHHhh-cCCC
Q 039390 159 VRQRPWG--KWAAEIRDPFKAARVWLGTFD--TAEDAARAYDEAALRF-RGNK 206 (263)
Q Consensus 159 Vr~r~~G--KW~A~I~~p~~gkri~LGtFd--T~EEAArAYD~AAl~l-~G~~ 206 (263)
|+-.+.| .|.-+.+..++.+++-||.|. |..+|....+.+...+ .|.+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 3455544 599888874455678899997 5788877766654444 3433
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=32.04 E-value=63 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCCCeeEeccCCCCHHHHHHHHHHHHHhhc
Q 039390 165 GKWAAEIRDPFKAARVWLGTFDTAEDAARAYDEAALRFR 203 (263)
Q Consensus 165 GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD~AAl~l~ 203 (263)
-.|+|.|.. ...-+-++...+++.|..|..+|+.+|=
T Consensus 78 ~~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 78 DHYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred cEEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 359999987 5555566666889999999999988764
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.58 E-value=30 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.2
Q ss_pred eeEeccCCCCHHHHHHHHHHHHH
Q 039390 178 ARVWLGTFDTAEDAARAYDEAAL 200 (263)
Q Consensus 178 kri~LGtFdT~EEAArAYD~AAl 200 (263)
-+|++|-|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47888999999999888765443
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.84 E-value=44 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.7
Q ss_pred CeeEeccCCCCHHHHHHHHHHHHH
Q 039390 177 AARVWLGTFDTAEDAARAYDEAAL 200 (263)
Q Consensus 177 gkri~LGtFdT~EEAArAYD~AAl 200 (263)
--||.+|-|.+.++|..+.++...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 457888999999999888765443
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=25.77 E-value=51 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=18.5
Q ss_pred CCCeeeeEECCCCeEEEEEeCC
Q 039390 153 RRKYRGVRQRPWGKWAAEIRDP 174 (263)
Q Consensus 153 tS~YRGVr~r~~GKW~A~I~~p 174 (263)
.--+.|+.++..|+|+.++.+.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT
T ss_pred CccCCCeEEccCCcEEEEEEcC
Confidence 3457889999899999999984
No 11
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=20.24 E-value=53 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=29.5
Q ss_pred CCCCeeeeEECCCCeEEEEEeCCCCCeeEeccCCCCHHHHHHHHH
Q 039390 152 PRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEDAARAYD 196 (263)
Q Consensus 152 ~tS~YRGVr~r~~GKW~A~I~~p~~gkri~LGtFdT~EEAArAYD 196 (263)
.--+||-||.-+ |||+|.+.. ...-.---.|..+|.|-+--.
T Consensus 36 kmd~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqrwa~ 77 (87)
T 2bn8_A 36 KMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQRWAN 77 (87)
T ss_dssp CTTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHHHHH
T ss_pred hcccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHHHHH
Confidence 345799999877 999999887 322222357888888876544
Done!