BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039391
VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNA
VSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQ
SINHIAILSGALFGVFLNKALNLREKRDKTL

High Scoring Gene Products

Symbol, full name Information P value
RBL11
rhomboid-like protein 11 		protein from Arabidopsis thaliana 1.5e-26
AT5G25640 protein from Arabidopsis thaliana 4.5e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039391
        (151 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956416 - symbol:RBL11 "rhomboid-like protei...   299  1.5e-26   1
TAIR|locus:2179454 - symbol:AT5G25640 species:3702 "Arabi...   153  4.5e-11   1


>TAIR|locus:504956416 [details] [associations]
            symbol:RBL11 "rhomboid-like protein 11" species:3702
            "Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
            activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0009706 "chloroplast
            inner membrane" evidence=IDA] [GO:0080140 "regulation of jasmonic
            acid metabolic process" evidence=IMP] InterPro:IPR002610
            InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006508 GO:GO:0004252
            PANTHER:PTHR22936 GO:GO:0009706 eggNOG:COG0705 EMBL:BT006426
            EMBL:AK228048 IPI:IPI00537629 RefSeq:NP_680221.1 UniGene:At.44059
            ProteinModelPortal:Q84MB5 STRING:Q84MB5 MEROPS:S54.025 PaxDb:Q84MB5
            PRIDE:Q84MB5 EnsemblPlants:AT5G25752.1 GeneID:832642
            KEGG:ath:AT5G25752 TAIR:At5g25752 HOGENOM:HOG000241269
            InParanoid:Q84MB5 OMA:CHANWNH PhylomeDB:Q84MB5
            ProtClustDB:CLSN2917838 Genevestigator:Q84MB5 GO:GO:0080140
            Uniprot:Q84MB5
        Length = 280

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 65/122 (53%), Positives = 73/122 (59%)

Query:    19 FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNXXXXXXXXXXXXXXXISVL 78
             F    F KLVEEEEGN GLWLSY+F+G  AN V WL+LP+N               ISVL
Sbjct:   139 FFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVL 198

Query:    79 VKMSWDRRKXXXXXXXXXXXXXK---AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGV 135
             VKMSWD RK             +   AAQA AG SGT  GGYS+Q++NHIA LSGAL GV
Sbjct:   199 VKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGALVGV 258

Query:   136 FL 137
              L
Sbjct:   259 VL 260

 Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 28/58 (48%), Positives = 31/58 (53%)

Query:     1 VRSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAA----ANFVPWL 54
             VR IKSLYL+HNFP WYQFVTA F         +  L+  YIF         NF  WL
Sbjct:   103 VRGIKSLYLYHNFPAWYQFVTATFCH-ANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 159


>TAIR|locus:2179454 [details] [associations]
            symbol:AT5G25640 species:3702 "Arabidopsis thaliana"
            [GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021 EMBL:CP002688
            GO:GO:0006508 GO:GO:0004252 IPI:IPI00517891 RefSeq:NP_197946.1
            UniGene:At.55002 ProteinModelPortal:F4JY73 SMR:F4JY73
            EnsemblPlants:AT5G25640.1 GeneID:832640 KEGG:ath:AT5G25640
            OMA:IDSHRYL PhylomeDB:F4JY73 Uniprot:F4JY73
        Length = 102

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/62 (50%), Positives = 36/62 (58%)

Query:    26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNXXXXXXXXXXXXXXXISVLVKMS--W 83
             K+VEEE+GN GLWLSY+F+G  AN V W  LP N               ISVLVKMS  W
Sbjct:    10 KIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVKMSRGW 69

Query:    84 DR 85
              +
Sbjct:    70 SK 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       123   0.00091  102 3  11 22  0.48    30
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.77u 0.09s 9.86t   Elapsed:  00:00:00
  Total cpu time:  9.77u 0.09s 9.86t   Elapsed:  00:00:00
  Start:  Fri May 10 23:47:20 2013   End:  Fri May 10 23:47:20 2013

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