BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039391
(151 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225430025|ref|XP_002281548.1| PREDICTED: putative rhomboid protease ydcA-like [Vitis vinifera]
Length = 222
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 121/158 (76%), Gaps = 21/158 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR+IK+LYL+HN+P WYQFVTA F W +LVEEEEGN GLWLSYI
Sbjct: 38 VRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYI 97
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+GA AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK+SWD RK+LEVLIL + V+EK
Sbjct: 98 LTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKV 157
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
AAQA G SGTF+GGYS+QSINHIA LSGAL GV L
Sbjct: 158 MEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 195
>gi|296081887|emb|CBI20892.3| unnamed protein product [Vitis vinifera]
Length = 293
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 121/158 (76%), Gaps = 21/158 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR+IK+LYL+HN+P WYQFVTA F W +LVEEEEGN GLWLSYI
Sbjct: 109 VRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYI 168
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+GA AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK+SWD RK+LEVLIL + V+EK
Sbjct: 169 LTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKV 228
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
AAQA G SGTF+GGYS+QSINHIA LSGAL GV L
Sbjct: 229 MEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 266
>gi|297812787|ref|XP_002874277.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297320114|gb|EFH50536.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 281
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/152 (67%), Positives = 115/152 (75%), Gaps = 21/152 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR IKSLYL+HNFP WYQFVTA F W KLVEEEEGN GLWLSY+
Sbjct: 102 VRGIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYL 161
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
F+G AN V WL+LP+NAVSVGA+GAVFGLFAISVLVKMSWD RK+LEVLIL + VVE+
Sbjct: 162 FTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVERV 221
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA AG SGT GGYS+Q++NHIA LSGA
Sbjct: 222 MEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 253
>gi|22327066|ref|NP_680221.1| rhomboid-like protein 11 [Arabidopsis thaliana]
gi|30102632|gb|AAP21234.1| At5g25752 [Arabidopsis thaliana]
gi|110736074|dbj|BAF00010.1| hypothetical protein [Arabidopsis thaliana]
gi|332006096|gb|AED93479.1| rhomboid-like protein 11 [Arabidopsis thaliana]
Length = 280
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/152 (67%), Positives = 115/152 (75%), Gaps = 21/152 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR IKSLYL+HNFP WYQFVTA F W KLVEEEEGN GLWLSY+
Sbjct: 103 VRGIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYL 162
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
F+G AN V WL+LP+NAVSVGA+GAVFGLFAISVLVKMSWD RK+LEVLIL + V+E+
Sbjct: 163 FTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERV 222
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA AG SGT GGYS+Q++NHIA LSGA
Sbjct: 223 MEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 254
>gi|255551048|ref|XP_002516572.1| conserved hypothetical protein [Ricinus communis]
gi|223544392|gb|EEF45913.1| conserved hypothetical protein [Ricinus communis]
Length = 308
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 115/158 (72%), Gaps = 21/158 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR IKSLYL+HN P WYQF++A F W KLVEEEEGN LWLSYI
Sbjct: 126 VRGIKSLYLYHNRPTWYQFISATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 185
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK++WD RK+LEVLIL + V+EK
Sbjct: 186 LTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKV 245
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
AAQA A SGTF GGY +QS+NHIA LSGAL GV L
Sbjct: 246 MEAAQASAALSGTFRGGYPMQSVNHIAHLSGALIGVVL 283
>gi|224141791|ref|XP_002324247.1| predicted protein [Populus trichocarpa]
gi|222865681|gb|EEF02812.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 111/152 (73%), Gaps = 21/152 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR IKSLYL+HN+P WYQFVTA F W KLVEEEEGN LWLSYI
Sbjct: 43 VRHIKSLYLYHNWPAWYQFVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 102
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK++WD RK+LEVLIL + V+EK
Sbjct: 103 LTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKV 162
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA A +G F GGY VQ++NHIA LSGA
Sbjct: 163 MEAAQASAAMTGPFRGGYPVQTVNHIAHLSGA 194
>gi|388504724|gb|AFK40428.1| unknown [Lotus japonicus]
Length = 284
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 107/152 (70%), Gaps = 21/152 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----WK--------------LVEEEEGNCGLWLSYI 42
V IK++YL+HN P WYQFVTA F WK LVEEEEGN LWL YI
Sbjct: 113 VNGIKAMYLYHNRPSWYQFVTATFCHANWKHLSSNLFFLYISGKLVEEEEGNFALWLCYI 172
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WLILP++ VSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VVEK
Sbjct: 173 LTGVGANLVSWLILPRDIVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVEKV 232
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA +GTF GGYS+QS+NHIA LSGA
Sbjct: 233 MEAAQASTSLTGTFRGGYSLQSVNHIAHLSGA 264
>gi|359811335|ref|NP_001240965.1| uncharacterized protein LOC100781449 [Glycine max]
gi|255635279|gb|ACU17993.1| unknown [Glycine max]
Length = 281
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 108/152 (71%), Gaps = 23/152 (15%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----WK--------------LVEEEEGNCGLWLSYI 42
V IK+LYL+HN+P WYQFVTA F WK LVEEEEGN LWLSYI
Sbjct: 112 VNGIKALYLYHNWPSWYQFVTATFCHANWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 171
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WL+LP+N VSVGA+GAVFGLF+ISVLVKMSWD RK+LEVLIL + V+EK
Sbjct: 172 LTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKMSWDWRKILEVLILGQFVIEKV 231
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA SG GGY++QS+NHIA LSGA
Sbjct: 232 MEAAQASTSLSGR--GGYALQSVNHIAHLSGA 261
>gi|449437036|ref|XP_004136298.1| PREDICTED: putative rhomboid protease YdcA-like [Cucumis sativus]
Length = 220
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 22/152 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR+I +LYL+H+ P WYQF TA F W KLVEEEEGN LWLSYI
Sbjct: 40 VRNIGALYLYHSRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYI 99
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WLILP+NAVSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + V+EK
Sbjct: 100 LTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKV 159
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA SG+F GYS+Q++NH+A LSGA
Sbjct: 160 MEAAQASTALSGSF-RGYSLQNVNHVAHLSGA 190
>gi|449517251|ref|XP_004165659.1| PREDICTED: LOW QUALITY PROTEIN: putative rhomboid protease
YdcA-like [Cucumis sativus]
Length = 220
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 22/152 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
VR+I +LYL+H+ P WYQF TA F W KLVEEEEGN LWLSYI
Sbjct: 40 VRNIGALYLYHSRPAWYQFFTATFCHANWNHLSSNXFFLYIFGKLVEEEEGNFALWLSYI 99
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK- 101
+G AN V WLILP+NAVSVGA+GAVFGLF ISVLVKMSWD RK+LEVLIL + V+EK
Sbjct: 100 LTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKV 159
Query: 102 --AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
AAQA SG+F GYS+Q++NH+A LSGA
Sbjct: 160 MEAAQASTALSGSF-RGYSLQNVNHVAHLSGA 190
>gi|326521496|dbj|BAK00324.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+R IK+LYL+H FP WYQFVT+ F W KLVEEEEGN LW+SYI
Sbjct: 101 IRQIKALYLYHAFPSWYQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYI 160
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
F+GA AN + WL+LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 161 FTGAGANLISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 220
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN 142
+A T+ T G ++Q +N+IA +SGAL G L +N
Sbjct: 221 MEAARATTVT---GTALQ-VNNIAHVSGALIGAALVFVIN 256
>gi|357436521|ref|XP_003588536.1| Rhomboid family protein (ISS) [Medicago truncatula]
gi|355477584|gb|AES58787.1| Rhomboid family protein (ISS) [Medicago truncatula]
Length = 302
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----WK------------------------------ 26
V IK+LYL H+ P W+QF+TA F WK
Sbjct: 114 VGGIKALYLFHSRPDWFQFLTATFCHANWKHLSSNLFFLYIFGKAVIRMNVCYFVAFATG 173
Query: 27 -LVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
LVEEE G+ LWLSYI +G AN V WLILP+N VSVGA+GAVFGLF ISVLVKMSWD
Sbjct: 174 KLVEEEGGSFALWLSYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKMSWDW 233
Query: 86 RKVLEVLILDELVVEK---AAQAPAGTSGTFIGGYSVQSINHIAILSGA 131
RK+LEVLIL + VVEK AAQA GTF GGY++Q++NHIA LSGA
Sbjct: 234 RKILEVLILGQFVVEKVMEAAQASTSLPGTFRGGYALQNVNHIAHLSGA 282
>gi|357134247|ref|XP_003568729.1| PREDICTED: uncharacterized protein LOC100841940 [Brachypodium
distachyon]
Length = 279
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 22/155 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+R IK+LYL+H +P WYQFVT+ F W KLVEEEEGN LW+SYI
Sbjct: 100 IRQIKALYLYHAYPSWYQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYI 159
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+GA AN + WL+LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 160 LTGAGANLISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 219
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+A T+ T G +VQ +N+IA LSGAL G L
Sbjct: 220 MEAARATTVT---GAAVQ-VNNIAHLSGALIGAAL 250
>gi|168035774|ref|XP_001770384.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678415|gb|EDQ64874.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 110/161 (68%), Gaps = 25/161 (15%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
++SLYL+H+FP WYQF T+ F W KLVEEEEG+ +WLSYIF+G
Sbjct: 55 VRSLYLYHDFPRWYQFFTSTFIHASWAHLSSNLFFLYIFGKLVEEEEGSFAVWLSYIFTG 114
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEK---A 102
AN V WLILP+ VSVGA+GAVFGLFAISVLVK+S+D RK+LEVLIL + VV+K A
Sbjct: 115 VGANLVSWLILPRTVVSVGASGAVFGLFAISVLVKLSFDWRKILEVLILGQFVVDKVMEA 174
Query: 103 AQAPAGTSG-TFIGGYSVQSINHIAILSGALFGVFLNKALN 142
AQA +G TF+G +INHIA LSGAL GV L LN
Sbjct: 175 AQASTQLAGRTFMGA---SNINHIAHLSGALVGVLLIWLLN 212
>gi|242089963|ref|XP_002440814.1| hypothetical protein SORBIDRAFT_09g007300 [Sorghum bicolor]
gi|241946099|gb|EES19244.1| hypothetical protein SORBIDRAFT_09g007300 [Sorghum bicolor]
Length = 270
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 106/155 (68%), Gaps = 22/155 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+R IKSLYL+H FP W+QFVT+ F W KLVEEEEGN LW+SYI
Sbjct: 98 IRQIKSLYLYHAFPTWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYI 157
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+GA AN + WL+LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 158 LTGAGANLISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 217
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+A T+ I G S Q +N+IA +SGAL G L
Sbjct: 218 MEAARATT---ITGQSFQ-VNNIAHVSGALIGAAL 248
>gi|223950233|gb|ACN29200.1| unknown [Zea mays]
Length = 183
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 25/170 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+R IKSLYL+H FP W+QFVT+ F W KLVEEEEGN LW+SYI
Sbjct: 8 IRQIKSLYLYHAFPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYI 67
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+GA AN + WL LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 68 LTGAGANLISWLALPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 127
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFG---VFLNKALNLREKRDK 149
+A T+ I G S Q +N++A +SGAL G VFL + D
Sbjct: 128 LEAARATT---ITGQSFQ-VNNVAHVSGALIGAALVFLVSRIPFSSNDDN 173
>gi|226493649|ref|NP_001149969.1| LOC100283596 [Zea mays]
gi|195635797|gb|ACG37367.1| rhomboid family protein [Zea mays]
gi|413949430|gb|AFW82079.1| rhomboid family protein [Zea mays]
Length = 273
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 25/170 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+R IKSLYL+H FP W+QFVT+ F W KLVEEEEGN LW+SYI
Sbjct: 98 IRQIKSLYLYHAFPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYI 157
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+GA AN + WL LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 158 LTGAGANLISWLALPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 217
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFG---VFLNKALNLREKRDK 149
+A T+ I G S Q +N++A +SGAL G VFL + D
Sbjct: 218 LEAARATT---ITGQSFQ-VNNVAHVSGALIGAALVFLVSRIPFSSNDDN 263
>gi|116792140|gb|ABK26248.1| unknown [Picea sitchensis]
Length = 305
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 103/156 (66%), Gaps = 23/156 (14%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
IK LYL+H+ P WYQF TA F W KLVEEE G LWLSY+ +G
Sbjct: 127 IKWLYLYHDLPQWYQFFTATFCHVNWSHLSSNLFFLYIFGKLVEEEGGGFALWLSYLVTG 186
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQA 105
A AN V WLILP+ VS+GA+GAVFGLFA+SVLVK+SWD RK+LEVLIL + V+EK A
Sbjct: 187 AGANLVSWLILPRTVVSIGASGAVFGLFAVSVLVKISWDWRKILEVLILGQFVIEKVMDA 246
Query: 106 PAGTSGTFIGGYS----VQSINHIAILSGALFGVFL 137
A S F+G S V++INHIA LSGAL GV L
Sbjct: 247 -AQASTQFVGNNSRILGVENINHIAHLSGALVGVAL 281
>gi|115462695|ref|NP_001054947.1| Os05g0220600 [Oryza sativa Japonica Group]
gi|46981237|gb|AAT07555.1| unknown protein [Oryza sativa Japonica Group]
gi|46981306|gb|AAT07624.1| unknown protein [Oryza sativa Japonica Group]
gi|113578498|dbj|BAF16861.1| Os05g0220600 [Oryza sativa Japonica Group]
gi|125551299|gb|EAY97008.1| hypothetical protein OsI_18930 [Oryza sativa Indica Group]
gi|215707124|dbj|BAG93584.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630649|gb|EEE62781.1| hypothetical protein OsJ_17584 [Oryza sativa Japonica Group]
Length = 276
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 107/155 (69%), Gaps = 22/155 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
+ IK++YL+H FP W+QFVT+ F W KLVEEEEG+ LW+SYI
Sbjct: 99 IEHIKAMYLYHAFPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYI 158
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+GA +N + WL+LP ++VS+GA+GAVFGLF ISVLVKMSWD RK+LEVLIL + VV+K
Sbjct: 159 LTGAGSNLISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKV 218
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+A T+ T G+S+Q +N+IA LSGAL G L
Sbjct: 219 MEAARATTVT---GHSLQ-VNNIAHLSGALIGAAL 249
>gi|302772887|ref|XP_002969861.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
gi|300162372|gb|EFJ28985.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
Length = 248
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 25/160 (15%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYI 42
V +K LYL+HN P WYQF+TA F W KLVEEEEG GLW SYI
Sbjct: 87 VPGMKLLYLYHNSPRWYQFITATFCHGNWGHISSNLFFLYMFGKLVEEEEGGFGLWASYI 146
Query: 43 FSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA 102
+G AN + WL+LP N VS+GA+GAVFGLFAISVLVK+SWD RK+LEVL+L + VV K
Sbjct: 147 VTGVGANLLSWLLLPGNVVSIGASGAVFGLFAISVLVKLSWDWRKLLEVLVLGQFVVNKV 206
Query: 103 AQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN 142
+ + S+NH+A +GA+ GV L AL+
Sbjct: 207 VEETQMLQ-------AASSVNHVAHCAGAMVGVLLIWALS 239
>gi|224029145|gb|ACN33648.1| unknown [Zea mays]
Length = 168
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 24 FWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSW 83
F KLVEEEEGN LW+SYI +GA AN + WL LP ++VS+GA+GAVFGLF ISVLVKMSW
Sbjct: 34 FGKLVEEEEGNFALWMSYILTGAGANLISWLALPTSSVSLGASGAVFGLFTISVLVKMSW 93
Query: 84 DRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFG---VFLNKA 140
D RK+LEVLIL + VV+K +A T+ I G S Q +N++A +SGAL G VFL
Sbjct: 94 DWRKILEVLILGQFVVDKVLEAARATT---ITGQSFQ-VNNVAHVSGALIGAALVFLVSR 149
Query: 141 LNLREKRDK 149
+ D
Sbjct: 150 IPFSSNDDN 158
>gi|145352382|ref|XP_001420528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580762|gb|ABO98821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 228
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 30/163 (18%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
+K+LYL+H P W+QF T+ F W KLVEEEEG G+W+SY+ +G
Sbjct: 57 VKTLYLNHAKPTWWQFATSTFCHANWAHLSSNIFFLYIFGKLVEEEEGAFGVWMSYLVTG 116
Query: 46 AAANFVPWLILPKN-----------AVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLIL 94
AN WL+LPK+ VS+GA+GAVFGLFA+SVLVK+SW+ R++LEV+IL
Sbjct: 117 IGANVASWLLLPKSVGGVLGIGGAATVSLGASGAVFGLFAVSVLVKLSWNWRRLLEVVIL 176
Query: 95 DELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+ VV++ + A G ++NH+A L GA GV L
Sbjct: 177 GQFVVDR-FLSEAKMVAAAGSGVGAGNVNHVAHLGGAFAGVLL 218
>gi|302806924|ref|XP_002985193.1| hypothetical protein SELMODRAFT_49801 [Selaginella moellendorffii]
gi|300147021|gb|EFJ13687.1| hypothetical protein SELMODRAFT_49801 [Selaginella moellendorffii]
Length = 81
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 63/78 (80%)
Query: 24 FWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSW 83
F KLVEEEEG GLW SYI +G AN + WL+LP N VS+GA+GAVFGLFAISVLVK+SW
Sbjct: 4 FGKLVEEEEGGFGLWASYIVTGVGANLLSWLLLPGNVVSIGASGAVFGLFAISVLVKLSW 63
Query: 84 DRRKVLEVLILDELVVEK 101
D RK+LEVL+L + VV K
Sbjct: 64 DWRKLLEVLVLGQFVVNK 81
>gi|386828855|ref|ZP_10115962.1| putative membrane protein [Beggiatoa alba B18LD]
gi|386429739|gb|EIJ43567.1| putative membrane protein [Beggiatoa alba B18LD]
Length = 195
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 25/156 (16%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
++ LYL+H+ P WYQFVT+ F W KL+EE+EG G+ +SY+ G
Sbjct: 37 LERLYLNHHHPEWYQFVTSLFCHASWQHLSGNLFFLYLFGKLIEEQEGASGVVISYLICG 96
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQA 105
AN + WL+ S+GA+GAVFGLF++SVL+++SWD R++LEVLIL + V+ + Q
Sbjct: 97 IGANIMSWLLQSGYFSSLGASGAVFGLFSVSVLIRLSWDWRRLLEVLILGQFVLIQVIQE 156
Query: 106 PAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKAL 141
IN +A L GA GV L +L
Sbjct: 157 TQQLG-------QADGINRVAHLGGAFIGVLLVLSL 185
>gi|412987965|emb|CCO19361.1| predicted protein [Bathycoccus prasinos]
Length = 328
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 31/163 (19%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
+K YL+H P W+QFVT F W KL+EEEEG G+W SY+ +G
Sbjct: 158 MKMFYLNHVDPTWWQFVTCTFCHASWDHLSSNIFFLYIFGKLIEEEEGAFGVWCSYVATG 217
Query: 46 AAANFVPWLILPKN-----------AVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLIL 94
A+ WL+LPK+ VS+GA+GAVFGLFA+SVLVK+ ++ +++LEV++L
Sbjct: 218 TGASLASWLMLPKSVGGVLGMGAAATVSLGASGAVFGLFAVSVLVKLKFEWKRILEVVVL 277
Query: 95 DELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+ V+E+ A +NH+A L+GAL GV L
Sbjct: 278 GQFVMERFLNEAAMIGKVGG--VGAGGVNHVAHLAGALAGVVL 318
>gi|434393813|ref|YP_007128760.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
gi|428265654|gb|AFZ31600.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
Length = 200
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 25/152 (16%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
I++LYL+H P WYQF T+ F W ++VEEEEG G+ SYI G
Sbjct: 41 IQNLYLNHASPAWYQFFTSMFCHANWAHISGNLFFLYIFGRIVEEEEGVIGVVSSYIICG 100
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQA 105
+ + + S+GA+GAVFGLFA+SVL+K+SW RK+LEVLIL + V+E+
Sbjct: 101 LGGSLMSYFFHGGAVYSLGASGAVFGLFAVSVLIKLSWHWRKILEVLILGQFVIERVVFE 160
Query: 106 PAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
T ++HIA L GAL GV L
Sbjct: 161 LRQTGIQ-------DGVDHIAHLGGALVGVAL 185
>gi|147812175|emb|CAN61519.1| hypothetical protein VITISV_033968 [Vitis vinifera]
Length = 292
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 25 WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWD 84
W +E CG + F+GA AN V WL+LP+NAVSVGA+GAVFGLFAISVLVK+SWD
Sbjct: 150 WLKRRKETLGCGFLI--FFTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWD 207
Query: 85 RRKVLEVLILDELVVEKAAQ 104
RK+LEVLIL + V+EK +
Sbjct: 208 WRKILEVLILGQFVIEKXQR 227
>gi|443312945|ref|ZP_21042559.1| putative membrane protein [Synechocystis sp. PCC 7509]
gi|442777095|gb|ELR87374.1| putative membrane protein [Synechocystis sp. PCC 7509]
Length = 201
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 26/165 (15%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
I++LYL+ + P WYQF TA F W KLVEEEEG G+ SY+ G
Sbjct: 42 IRNLYLNFSSPSWYQFFTAMFCHANWAHISGNLFFLYIFGKLVEEEEGVIGVVSSYLICG 101
Query: 46 AAANFVPWLILPKNA-VSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQ 104
A+ + +L +A S+GA+GAVFGLF +SVL+K+SW R+VLEV+IL + VVE+
Sbjct: 102 LGASVMSFLFHGSSAGYSLGASGAVFGLFVVSVLIKLSWHWRRVLEVIILGQFVVERILF 161
Query: 105 APAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
T T ++H+A + GAL GV L L E K
Sbjct: 162 EFRQTGIT-------DGVDHVAHIGGALVGVALITVLMRLEPVKK 199
>gi|297812783|ref|XP_002874275.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320112|gb|EFH50534.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 103
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 58/76 (76%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
K+VEEE+GN GLWLSY+F+G AN V W LP N+VS GA+GAVFGLF ISV VKMS
Sbjct: 10 KIVEEEKGNFGLWLSYLFTGVGANLVSWFTLPPNSVSAGASGAVFGLFVISVRVKMSPGW 69
Query: 86 RKVLEVLILDELVVEK 101
RK LE LIL + V+++
Sbjct: 70 RKFLEFLILGQFVMKR 85
>gi|384253784|gb|EIE27258.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 199
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 91/169 (53%), Gaps = 24/169 (14%)
Query: 4 IKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSG 45
+ SLYL H P W+QF+TAAF W K+VEEEEG LW +YI
Sbjct: 33 VSSLYLWHRAPHWWQFLTAAFCHASWDHLSSNLFMLYTFGKIVEEEEGPGALWFTYIVCS 92
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQ- 104
A+ + P S+GA+GAVFGLFA++VL+K+ ++ +K++E L+L + VV++ Q
Sbjct: 93 VGASAASFFADPAATYSLGASGAVFGLFAVAVLLKLRFNFQKLVECLVLGQFVVKQVLQE 152
Query: 105 -APAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN-LREKRDKTL 151
A G IG + HIA L+GA+ GV L L L + K L
Sbjct: 153 VVSAQNGGAMIGA---SKVGHIAHLAGAVMGVALILLLQRLPDPNSKQL 198
>gi|452821942|gb|EME28966.1| hypothetical protein Gasu_35410 [Galdieria sulphuraria]
Length = 300
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 18/147 (12%)
Query: 7 LYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSGAAA 48
L L H+ P W+QFVT +F W KLVEEEEG G+ +SY +
Sbjct: 132 LVLTHSGPRWWQFVTYSFCHESWAHLSNNLFFLLIFGKLVEEEEGAFGIIMSYCICAFGS 191
Query: 49 NFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAG 108
+ W++LPK++VSVGA+GAVFGLF I VL + SW+ +++LE LIL + V + +
Sbjct: 192 ALLSWMVLPKHSVSVGASGAVFGLFTICVLTRFSWNWKRLLEFLILGQYVYQILGREVRL 251
Query: 109 TSGTFIGGYSVQSINHIAILSGALFGV 135
+ + ++ ++NHI ++G+ G+
Sbjct: 252 AASSSSHKWTAVAVNHIGHIAGSATGI 278
>gi|428777216|ref|YP_007169003.1| rhomboid family protein [Halothece sp. PCC 7418]
gi|428691495|gb|AFZ44789.1| Rhomboid family protein [Halothece sp. PCC 7418]
Length = 372
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 79/150 (52%), Gaps = 25/150 (16%)
Query: 6 SLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFSGAA 47
+ YL H+ WYQ +T+ F W KLVEEEEG G+ SY+ G
Sbjct: 214 TFYLDHDDVAWYQLITSMFCHANWQHLSSNLFFLYLFGKLVEEEEGVMGIVGSYLICGLG 273
Query: 48 ANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPA 107
AN + + P VS+GA+GAVFGLF +SVL+K+ W R++LEV+IL + V+++
Sbjct: 274 ANLMSLMFQPSYVVSLGASGAVFGLFTVSVLLKLGWHWRRLLEVIILGQFVLQRVLFELQ 333
Query: 108 GTSGTFIGGYSVQSINHIAILSGALFGVFL 137
V IN IA L GAL GV L
Sbjct: 334 NLD-------RVDGINRIAHLGGALMGVIL 356
>gi|15239484|ref|NP_197946.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332006094|gb|AED93477.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 102
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 57/76 (75%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
K+VEEE+GN GLWLSY+F+G AN V W LP N+ GA+GAVFGLF ISVLVKMS
Sbjct: 10 KIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVKMSRGW 69
Query: 86 RKVLEVLILDELVVEK 101
K LEVLIL + V+++
Sbjct: 70 SKFLEVLILGQFVMKR 85
>gi|303284387|ref|XP_003061484.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456814|gb|EEH54114.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 369
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 90/213 (42%), Gaps = 81/213 (38%)
Query: 4 IKSLYLHHNFPPWYQFVTA------------------AFWKLVEEEEGNCGLWLSYIFSG 45
+++LYL+H P W+QFVT+ F ++VEEEEG G+W SY+F+G
Sbjct: 148 MRALYLNHMHPQWWQFVTSIFCHANWAHLSGNIFFLYVFGRIVEEEEGTFGVWFSYLFTG 207
Query: 46 AAANFVPWLILPKNA-----------VSVGAAGAVF------------------------ 70
A +L+LPK A VS+GA+GAVF
Sbjct: 208 VGAGVASYLVLPKAAGGMLGLGAAATVSLGASGAVFGASLGLSTRGARRRLVVFSLRWIR 267
Query: 71 --------------------------GLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQ 104
GLFAISVL KM + RK+LE +IL + V+E+
Sbjct: 268 SAADAGATVPPSLSLSPPSVRPSVPPGLFAISVLTKMKMNFRKLLEAVILGQFVIERFLS 327
Query: 105 APAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
S +NH+A L+GAL GV L
Sbjct: 328 EARMASAAGG--VGAGGVNHVAHLAGALVGVLL 358
>gi|307110898|gb|EFN59133.1| hypothetical protein CHLNCDRAFT_49978 [Chlorella variabilis]
Length = 259
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 3 SIKSLYLHHNFPPWYQFVTAAF----W--------------KLVEEEEGNCGLWLSYIFS 44
++ +L L H P W+QFVT+ F W + VEEEEG GLWL+Y+ +
Sbjct: 95 ALSNLALSHWKPQWWQFVTSTFMHANWQHLSSNAFALLVFGRQVEEEEGALGLWLTYLVA 154
Query: 45 GAAANFVPWLILPKN-AVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKA- 102
G +L P +S+GA+GAVFGLF ++V+ K RK+LE++IL VV++
Sbjct: 155 GVGGAVASYLSSPHTRTISLGASGAVFGLFMVAVITKFKPSLRKLLELVILGSFVVQQVL 214
Query: 103 --AQAPAGTSGTFIGGYSVQSINH 124
Q AG G +GG V + H
Sbjct: 215 GELQMAAG-GGLTVGGMQVGHVAH 237
>gi|159486905|ref|XP_001701477.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158271659|gb|EDO97474.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 283
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 28/161 (17%)
Query: 7 LYLHHNFPPWYQ------------------FVTAAFWKLVEEEEGNCGLWLSYIFSGAAA 48
L+L+H P W+Q F F K+VEE EG G+ L+++ G A
Sbjct: 121 LHLNHYKPQWWQWGTHLFCHANFAHLSGNLFNLCVFGKMVEETEGAVGVSLAFLVCGIGA 180
Query: 49 NFVPWLILPKNA-----VSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAA 103
+ + P A VSVGA+GA+FGLFA+SV ++ W+ +++LE +L + VV +
Sbjct: 181 AIAAFFLTPALAHGRITVSVGASGAIFGLFAVSVATRLRWNLKQLLEAAVLGQFVVRQVL 240
Query: 104 QAP--AGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALN 142
+ T G +GG +V +H+A L+GA GV L AL+
Sbjct: 241 EEAKNQATGGLVLGGLAV---SHVAHLAGAAVGVALVLALS 278
>gi|302845889|ref|XP_002954482.1| hypothetical protein VOLCADRAFT_106417 [Volvox carteri f.
nagariensis]
gi|300260154|gb|EFJ44375.1| hypothetical protein VOLCADRAFT_106417 [Volvox carteri f.
nagariensis]
Length = 275
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 28/137 (20%)
Query: 14 PPWYQFVT------------------AAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLI 55
P W+QF+T F K+VEE EG G+ L+++ G A +L
Sbjct: 113 PQWWQFLTHMFCHGNWAHLSGNLFNLCVFGKMVEETEGALGVVLTFLLCGVGAALATFLA 172
Query: 56 LPKN----AVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVV----EKAAQAPA 107
P + VSVGA+GA+FGLFA+SV ++ W+ +++LE +L + VV ++A A
Sbjct: 173 TPASNGHVTVSVGASGAIFGLFAVSVATRLRWNLKQLLEAAVLGQFVVRQVLDEARHQVA 232
Query: 108 GTSGTFIGGYSVQSINH 124
G G +GG +V H
Sbjct: 233 G--GLMMGGMAVSHAAH 247
>gi|298715786|emb|CBJ28264.1| rhomboid-like protease [Ectocarpus siliculosus]
Length = 473
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 7 LYLHHNFPPWYQFVTA------------------AFWKLVEEEEGNCGLWLSYIFSGAAA 48
L L+H P W+Q +T+ F K+ EE+ G+ G+ +S++ G A+
Sbjct: 298 LSLNHQRPRWWQSITSLLLHGDQHHLMGNMFNLIIFGKMAEEDMGSVGMLMSFVACGVAS 357
Query: 49 NFVPWLILPKNAVSVGAAGAVFGLFAISVLVKM-------SWD--RRKVLEVLILDELVV 99
+FV +I+P+ A S GA+GA+FGL+++ VL KM S D RK++E + VV
Sbjct: 358 SFVSLMIMPQTARSCGASGAIFGLYSVCVLGKMFNLGRRSSSDGRLRKLIEAAVFGWFVV 417
Query: 100 EKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFL 137
+ + + V+ I+H A G G L
Sbjct: 418 DSVI-----SEMRMVVAGGVKGIDHAAHFGGVFAGAVL 450
>gi|428168079|gb|EKX37028.1| hypothetical protein GUITHDRAFT_116754 [Guillardia theta CCMP2712]
Length = 148
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 65/149 (43%), Gaps = 44/149 (29%)
Query: 4 IKSLYLHHNFPPWYQFVTAA------------------FWKLVEEEEGNCGLWLSYIFSG 45
+ LY +H P +Q+ T+ F KLVEEE G GL L Y G
Sbjct: 3 MSGLYFNHMHPQLHQYFTSTLCHANAQHLSSNLFPLLVFGKLVEEEMGGWGLLLCYALCG 62
Query: 46 AAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQA 105
AN + LP + + +GA+GAVFGLF I+V W++ K +E A A
Sbjct: 63 ILANVASIIFLPSSTLGLGASGAVFGLFTIAV-----WEKLK-----------MEVAITA 106
Query: 106 PAGTSGTFIGGYSVQSINHIAILSGALFG 134
G +G +NH+A L GA G
Sbjct: 107 KGGIAG----------VNHVAHLGGAFAG 125
>gi|406876561|gb|EKD26088.1| hypothetical protein ACD_79C01375G0003 [uncultured bacterium]
Length = 189
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 7 LYLHHNFPPWYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAA 48
L+L+ + WYQ +T+ F +L+EE+EG G+ +SY+ G A
Sbjct: 36 LFLNTSDVRWYQLLTSIFCHLEYSHLSGNLFFLYIFGRLIEEQEGTMGVVVSYLICGIGA 95
Query: 49 NFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAG 108
N ++ + +GA+GA+FGLF IS+L+K ++E+ IL V+
Sbjct: 96 NLFTLVLNFHSGYYIGASGAIFGLFTISMLIKFKPRFTNIIEIFILTPFVLGYIITELKS 155
Query: 109 TSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
+ + +I+H + + G++ GV L + LR R K
Sbjct: 156 LNNS-------DNISHESHIYGSIVGVLL--IIGLRYLRGK 187
>gi|440797340|gb|ELR18431.1| peptidase, S54 (rhomboid) subfamily protein, partial [Acanthamoeba
castellanii str. Neff]
Length = 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 23/163 (14%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAFW------------------KLVEEEEGNCGLWLSYI 42
+ ++ YL+ + P +Q VT+ F ++VEE G+ G+ ++
Sbjct: 64 LEGMRGFYLYQHNPWVHQLVTSLFCHASYAHLSSNLFFIFIFGRIVEERRGSWGIVAVFL 123
Query: 43 FSGAAANFV----PWLILPKNAV-SVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDEL 97
G AN + P+ + P V ++GA+G VFGLF +SVL ++ R ++EVL+L +
Sbjct: 124 TCGICANLLTLLTPYDVKPGVVVYNLGASGGVFGLFVVSVLDRLELRPRSLVEVLVLGQF 183
Query: 98 VVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKA 140
V+ + + S + +IN A L GAL GV A
Sbjct: 184 VLNRIVEELQSLSRSAATSGDRVNINRTAHLGGALTGVIFCVA 226
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH NF + + F K+VE G+ + Y+F+G NFV L
Sbjct: 204 RLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FAI L K ++D+R + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFAILYLSK-TFDKRVIGQLLI 299
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH NF + + F K+VE G+ + Y+F+G NFV L
Sbjct: 204 RLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FAI L K ++D+R + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFAILYLSK-TFDKRVIGQLLI 299
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH+NF + + F K+VE G+ + Y+F+G NFV L
Sbjct: 204 RLVTSMFLHYNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FAI L K ++D++ + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFAILYLSK-TFDKKVIGQLLI 299
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + + LH FP + F F ++E G L YI +GAAAN L+ P
Sbjct: 60 RLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGAAANIATLLLEPLT 119
Query: 60 AVSVGAAGAVFGLFA 74
+ VGA+GA+FGLF
Sbjct: 120 YIHVGASGAIFGLFG 134
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 2 RSIKSLYLHHNFPPWYQ--FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R S++LH F F F +E G+ L Y+ SG + + + +L++ +
Sbjct: 63 RYFASMFLHFGFMHLLMNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLLMSER 122
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRKVLE---------VLILDELVVEKAAQAPAGTS 110
VS GA+GAV+G+FA + + + R+ VL+ +LI+ + + G
Sbjct: 123 TVSAGASGAVYGVFAAYLFLAI--FRKDVLDAQSGQTIKTILIVGLIYSLLPGVSFFGHL 180
Query: 111 GTFIGGYSVQSI 122
G FIGG+++ +I
Sbjct: 181 GGFIGGFALMAI 192
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 79 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 137
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL F I L K +++++ + ++LI
Sbjct: 138 TISVGASGAIFGLIGSIFVIMYLSK-NFNKKMIGQLLI 174
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 44 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 102
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL F I L K +++++ + ++LI
Sbjct: 103 TISVGASGAIFGLIGSIFVIMYLSK-NFNKKMIGQLLI 139
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV +
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV------------LIVFSLF 310
Query: 119 VQSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 311 MSNINIMAHLGGFIIGVLI 329
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + Y SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKV 88
+SVGA+GA+FGL FAI L K ++DR+ +
Sbjct: 263 TISVGASGAIFGLIGSIFAIMYLSK-TFDRKVI 294
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + Y SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKV 88
+SVGA+GA+FGL FAI L K ++DR+ +
Sbjct: 263 TISVGASGAIFGLIGSIFAIMYLSK-TFDRKVI 294
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWD-RRKVLEVLILDELVVEKAAQAPAGTS-----GT 112
+SVGA+GA+FGL +I V++ +S + +K++ L++ +V+ + + + G
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVVLIGFSLFMSNINIMAHLGG 322
Query: 113 FIGGYSVQSINHIAILSGALFGVFLN 138
FI G + I + +LF FLN
Sbjct: 323 FISGVLITLIGYYFKAHRSLFWAFLN 348
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 20/141 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV + G+S
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV--------------LIGFS 308
Query: 119 V--QSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 309 LFMSNINIMAHLGGFISGVLI 329
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 20/141 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV + G+S
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV--------------LIGFS 308
Query: 119 V--QSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 309 LFMSNINIMAHLGGFISGVLI 329
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 20/141 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV + G+S
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV--------------LIGFS 308
Query: 119 V--QSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 309 LFMSNINIMAHLGGFISGVLI 329
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 20/141 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV + G+S
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV--------------LIGFS 308
Query: 119 V--QSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 309 LFMSNINIMAHLGGFISGVLI 329
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 20/141 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L +
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+SVGA+GA+FGL +I V++ +S + K + +L LVV + G+S
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV--------------LIGFS 308
Query: 119 V--QSINHIAILSGALFGVFL 137
+ +IN +A L G + GV +
Sbjct: 309 LFMSNINIMAHLGGFISGVLI 329
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL F I L K +++++ + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSK-NFNKKMIGQLLI 299
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+GA+FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH+NF + + F K+VE G+ + + ++FSG ANF L +
Sbjct: 204 RLISSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFAS-LSFNID 262
Query: 60 AVSVGAAGAVFG----LFAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FG LF + K+ ++R+ V ++LI
Sbjct: 263 TISVGASGAIFGLIGSLFGFMYISKI-FERKLVGQLLI 299
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLEVLI 93
+SVGA+GA+FGL +I V++ +S ++++ + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLI 299
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLEVLI 93
+SVGA+GA+FGL +I V++ +S ++++ + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLI 299
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S+++H NF + + F KLVE G+ + Y SG N V L L N
Sbjct: 203 RLISSMFIHFNFEHILMNMLSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVS-LALDTN 261
Query: 60 AVSVGAAGAVFG----LFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTS---GT 112
++SVGA+GA+FG LFAI L K + + V +L L V A G
Sbjct: 262 SISVGASGAIFGLIGSLFAIMYLSKQYTPKMLLQLVGVLALLTVFSLFMANVNIYAHLGG 321
Query: 113 FIGGYSVQSINHIAILSGALFGVFL 137
FIGG I + LF + L
Sbjct: 322 FIGGLLATFIGYYFNKDRKLFWILL 346
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + + YI SG NF+ L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLS-LSFNTD 261
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLEVLI 93
VS GA+GA+FGL AI V++ +S + R+ + ++LI
Sbjct: 262 TVSAGASGAIFGLIGAIIVMMIISKVYSRKMIGQLLI 298
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
WY+ VTA F W L E N G Y+ +G N +L
Sbjct: 139 WYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAAYLFSA 198
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+NA + GA+ A+FGLFA +++ +M D VL VL+++
Sbjct: 199 ENATTAGASTAIFGLFAALIVIERRMGRDISSVLPVLVIN 238
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH NF + + F KLVE G+ + Y+ SG N V L + +
Sbjct: 203 RLVTSMFLHFNFEHILMNMLSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVS-LAIDNS 261
Query: 60 AVSVGAAGAVFG----LFAISVLVKMSWDRRKVLEVL 92
++SVGA+GA+FG LFA+ + K +DR+ + +++
Sbjct: 262 SISVGASGAIFGLIGSLFAMMYISK-QYDRKSLFQLI 297
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILPK 58
R + +++LH + F + W L +E+ G Y+ SG A + + +L+
Sbjct: 142 RLLTAMFLHGGYA-HIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALSYLLAAA 200
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N S+GA+GA+FGLF A +VLV ++++D R V+ +L+++
Sbjct: 201 NQPSLGASGAIFGLFGATAVLVRRLNYDMRPVIALLVIN 239
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + YI SG NFV L
Sbjct: 204 RLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVV 99
+SVGA+G +FGL +I V++ +S + K + +L LVV
Sbjct: 263 TISVGASGTIFGLIGSIFVIMYLSKNFNKKMIGQLLIALVV 303
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + Y SG NFV L +
Sbjct: 204 RLITSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLIIYFISGLFGNFVS-LSFNTS 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRR 86
+SVGA+GA+FGL FAI L K ++D++
Sbjct: 263 TISVGASGAIFGLIGAIFAIMYLSK-TFDKK 292
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
Y+ SG A + + +LI N S+GA+GA+FGLF A +VL+ ++ +D R V+ +L+++
Sbjct: 193 YLVSGLAGSALTYLIAAANQPSLGASGAIFGLFGATAVLMRRLQYDMRPVIALLVIN 249
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++LH W+ F W L +E G Y+ SG A + + ++++
Sbjct: 130 RILTSVFLHQEV--WHIGFNMLGLWMLGGPLEAALGRVRYLALYLLSGLAGSALTYVLVA 187
Query: 58 KNAVSVGAAGAVFGLFAIS--VLVKMSWDRRKVLEVLILDELVV 99
N S+GA+GAVFGL + +L ++ +D R VL ++ L+ L+
Sbjct: 188 PNQPSLGASGAVFGLMGATFVLLRRLRYDPRPVLGLIALNVLIT 231
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G+ + + Y+F+G NF L +
Sbjct: 203 RLITSMFLHFNFEHLLMNMLSLFIFGKIVESIVGHWRMLVIYLFAGLFGNFAS-LSFNTH 261
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLEVLIL 94
VS GA+GA+FGL AI + +S ++R+ + ++LI+
Sbjct: 262 TVSAGASGAIFGLIGAIFTFMYLSKTFNRKLIGQLLIV 299
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILPK 58
R + S++LH F W L + E G +L+ Y+ SG A + + +LI
Sbjct: 139 RLVTSMFLHQEVV-HIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLIAAP 197
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N S+GA+GAV+GLF A +VL+ +M++D R VL +L ++
Sbjct: 198 NQGSLGASGAVYGLFGATAVLMRRMNYDMRPVLVLLAIN 236
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILPK 58
R + S++LH F W L + E G +L+ Y+ SG A + + +LI
Sbjct: 124 RLVTSMFLHQEVV-HIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLIAAP 182
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N S+GA+GAV+GLF A +VL+ +M++D R VL +L ++
Sbjct: 183 NQGSLGASGAVYGLFGATAVLMRRMNYDMRPVLVLLAIN 221
>gi|383636302|ref|ZP_09950708.1| hypothetical protein SchaN1_02019 [Streptomyces chartreusis NRRL
12338]
Length = 296
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H W+ F + W L +E G Y+ SG A + + +L+
Sbjct: 134 RLVTSMFTHQEI--WHIAFNMLSLWWLGGPLEAALGRVRYLALYLVSGLAGSTLAYLLTS 191
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N ++GA+GA+FGLF A +VL+ ++++D R ++ +L+++
Sbjct: 192 PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLVIN 231
>gi|302559651|ref|ZP_07311993.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
gi|302477269|gb|EFL40362.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 33/125 (26%)
Query: 4 IKSLYLHHNFPP-------------WYQFVTAAF-----WKL-------------VEEEE 32
++ LYL +PP WY+ T+ F W + +E+
Sbjct: 107 VRDLYLIGTWPPAPFLPTQGVAEGEWYRLFTSMFTHQEIWHIAFNMLSLWWLGGPLEQAL 166
Query: 33 GNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLE 90
G Y+ SG A + +L+ S+GA+GA+FGLF A +VL+ ++++D R V+
Sbjct: 167 GRVRYLTLYLISGLAGGALTYLLASGTTASLGASGAIFGLFGATAVLMRRLNYDMRPVIA 226
Query: 91 VLILD 95
+L+++
Sbjct: 227 LLVIN 231
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILPK 58
R + S++LH F W L + E G +L+ Y+ SG A + + +L+ +
Sbjct: 139 RLVTSMFLHQEVV-HLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLLAAQ 197
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N S+GA+GAV+GLF A +VL+ +M++D R VL +L ++
Sbjct: 198 NQPSLGASGAVYGLFGATAVLMRRMNYDMRPVLILLAVN 236
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
WY+ VTA F W L E N G Y+ +G N +L
Sbjct: 139 WYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAAYLFSA 198
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+N+ + GA+ AVFGLFA +++ K+ D +V+ +L+++
Sbjct: 199 QNSATAGASTAVFGLFAALIIIERKLGRDISQVIPILVIN 238
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+FVT+ F W + +E G Y SG A + +L+
Sbjct: 132 WYRFVTSMFAHQEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTS 191
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
S+GA+GA+FGLF A +VL+ ++++D R V+ +L+++
Sbjct: 192 PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVIN 231
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+FVT+ F W + +E G Y SG A + +L+
Sbjct: 118 WYRFVTSMFAHQEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTS 177
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
S+GA+GA+FGLF A +VL+ ++++D R V+ +L+++
Sbjct: 178 PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVIN 217
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L+ P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLVEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
V VGA+GA+FGLF + V + + D+ K++ L++ ++ TF
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLVIAVL------------STF 167
Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
I +IN +A L G L G FL L +++K+ +
Sbjct: 168 IN----SNINIMAHLFG-LAGGFLLSFLCVQQKKRR 198
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I +++LH N+ + + +W +E G Y SG A + + +L+ N
Sbjct: 121 RLITAMFLHANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGSALTYLLAAPN 180
Query: 60 AVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELVV 99
S+GA+GA+FGLF A +VL+ ++ +D R V+ +L+++ ++
Sbjct: 181 QPSLGASGAIFGLFGATAVLMRRLRYDMRPVIALLVINLIIT 222
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H W+ F + W L +E+ G Y+ SG A + + +L+
Sbjct: 134 RLVTSMFTHEEI--WHIGFNMLSLWLLGGPLEQHLGRARYLALYLISGLAGSALTYLLAG 191
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELVV 99
S+GA+GAVFGLF A +VL+ ++ +D R ++ +L+++ ++
Sbjct: 192 GGTASLGASGAVFGLFGATAVLMRRLRYDMRPIVALLVINLVIT 235
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H W+ F + W L +E G Y+ SG A + + +L+
Sbjct: 134 RMVTSMFTHQEI--WHIAFNMLSLWWLGGPLEAALGRVRYLALYLVSGLAGSALAYLLAS 191
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIG 115
N ++GA+GA+FGLF A +VL+ ++++D R ++ +L ++ + TF
Sbjct: 192 PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLAINLIF-------------TFSP 238
Query: 116 GYSVQSINHI-AILSGALFGVFLNKALNLREKR 147
G+++ HI +++G + G + A RE+R
Sbjct: 239 GFNISWQAHIGGLVAGVVIGYAMVHA--PRERR 269
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
Y SG A + + +LI N S+GA+GA+FGLF A +VL+ ++++D R V+ +L+++
Sbjct: 178 YFVSGLAGSGLTYLIAAPNQPSLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVIN 234
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH+NF + + F K+VE G+ +++ Y+ +G NF L +
Sbjct: 203 RLITSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFAS-LSFNTD 261
Query: 60 AVSVGAAGAVFGLFA---ISVLVKMSWDRRKVLEVLIL 94
VSVGA+GA+FGL + + ++R+ + ++LI+
Sbjct: 262 TVSVGASGAIFGLIGAIFTFMYIGKQFNRKLIGQLLIV 299
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH+NF + + F K+VE G+ +++ Y+ +G NF L +
Sbjct: 207 RLITSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFAS-LSFNTD 265
Query: 60 AVSVGAAGAVFGLFA---ISVLVKMSWDRRKVLEVLIL 94
VSVGA+GA+FGL + + ++R+ + ++LI+
Sbjct: 266 TVSVGASGAIFGLIGAIFTFMYIGKQFNRKLIGQLLIV 303
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ VTA F + +E G Y+ +G N +LI
Sbjct: 139 WYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAAYLISA 198
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
NA + GA+ A+FGLFA +V +M D +VL +L+++
Sbjct: 199 PNAATAGASTAIFGLFAALFVVGRRMGRDVSQVLPILVIN 238
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
WY+ +TA F W L E + G Y+ SG N +LI
Sbjct: 139 WYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAAYLISA 198
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
NA + GA+ A+FGLFA +V ++ D +VL +L+++
Sbjct: 199 PNAATAGASTAIFGLFAALFVVGRRLGRDVSQVLPILVIN 238
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIVSGIIGNIGTYLAEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
V VGA+GA+FGLF + V + + D+ K++ L++ ++ TF
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVL------------STF 167
Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
I +IN +A L G L G FL L +++K+ +
Sbjct: 168 IN----SNINIMAHLFG-LAGGFLLSFLCVQQKKRR 198
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW---KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPK 58
R + S++LH + F A W ++VE G + Y+ SG + +L+
Sbjct: 137 RLLTSVFLHQDLS-HIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLSEP 195
Query: 59 NAVSVGAAGAVFGL---FAISVLVKMSWDRRKV 88
N ++GA+GA+FGL FA+ +L +M+ D R V
Sbjct: 196 NQATIGASGAIFGLVGAFAV-LLRRMNLDLRPV 227
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 16/106 (15%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKL--------VEEEEGNCGLWLSYIFSGAAANFVPW 53
R + S++LH Q + AF L +E G + YI SG + + +
Sbjct: 132 RLVTSIFLHQ------QLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSY 185
Query: 54 LILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDEL 97
L+ +N S+GA+GA+FGL A +VL+ ++++D R V+ +L L+ L
Sbjct: 186 LLAAQNQPSLGASGAIFGLLGATAVLMRRLNYDMRPVIALLALNLL 231
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +TAAF W + +E G Y+ SG + + +L+
Sbjct: 128 WYRLLTAAFLHQQPLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGSALSYLLAA 187
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
+N S+GA+GAVFGL A +VL+ ++++D R V+ +L+L+
Sbjct: 188 QNQPSLGASGAVFGLLGATAVLMRRLNYDMRPVIALLVLN 227
>gi|297812785|ref|XP_002874276.1| hypothetical protein ARALYDRAFT_910630 [Arabidopsis lyrata subsp.
lyrata]
gi|297320113|gb|EFH50535.1| hypothetical protein ARALYDRAFT_910630 [Arabidopsis lyrata subsp.
lyrata]
Length = 132
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 1 VRSIKSLYLHHNFPPWYQFVTAAF 24
VR IKS+YL+ +FP WYQFVTA F
Sbjct: 104 VRGIKSMYLYSDFPAWYQFVTATF 127
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + F KL+E G+ ++ Y+ SG N V P +
Sbjct: 204 RLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRMFGVYMLSGIIGNLVTLAFSP-D 262
Query: 60 AVSVGAAGAVFGLFA---ISVLVKMSWDRRKVLEVLI 93
S+GA+GA+FGL +++ +D+R + ++L+
Sbjct: 263 TFSLGASGAIFGLIGSLIACMIISQKFDQRTIGQLLL 299
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
V VGA+GA+FGLF + V + + D+ K++ L++ ++ TF
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVL------------STF 167
Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
I +IN +A L G L G FL L +++K+ +
Sbjct: 168 IN----SNINIMAHLFG-LAGGFLLSFLCVQQKKRR 198
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH F + + F KLVE G + +YI SG N + L L
Sbjct: 203 RLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLIS-LALITT 261
Query: 60 AVSVGAAGAVFGLFAISV---LVKMSWDRRKVLEVLI 93
++S+GA+GA+FGL + ++ +D++ +L+++I
Sbjct: 262 SLSLGASGAIFGLMGALIALMIISRRFDQKVILQMVI 298
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
V VGA+GA+FGLF + V + + D+ K++ L++ ++ TF
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVL------------STF 167
Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
I +IN +A L G L G FL L +++K+ +
Sbjct: 168 IN----SNINIMAHLFG-LAGGFLLSFLCVQQKKRR 198
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH F + + F KLVE G + +YI SG N + L L
Sbjct: 203 RLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLIS-LALITT 261
Query: 60 AVSVGAAGAVFGLFAISV---LVKMSWDRRKVLEVLI 93
++S+GA+GA+FGL + ++ +D++ +L+++I
Sbjct: 262 SLSLGASGAIFGLMGALIALMIISRRFDQKVILQMVI 298
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 49/178 (27%)
Query: 4 IKSLYLHHNFPP-------------WYQFVTAAF-----WKL-------------VEEEE 32
++ LYL +PP WY+ T+ F W + +E+
Sbjct: 107 LRDLYLIGVWPPAPFLPTEGVADGEWYRLFTSMFTHEAIWHIAFNMLGLWWLGGPLEQAL 166
Query: 33 GNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLE 90
G Y+ SG A + + +L+ ++GA+GA+FGLF A++VL+ ++ +D R ++
Sbjct: 167 GRARYLALYLISGLAGSALTYLLASGTTATLGASGAIFGLFGAMAVLMRRLDYDMRPIIA 226
Query: 91 VLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHI-AILSGALFGVFLNKALNLREKR 147
+L+++ + TF G+++ HI +++G + G + A RE+R
Sbjct: 227 LLVINLIF-------------TFSPGFNIAWQAHIGGLVAGVVIGYAMVHA--PRERR 269
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGLIGNIGTYLAEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
V VGA+GA+FGLF + V + + D+ K++ L++ ++ TF
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVL------------STF 167
Query: 114 IGGYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
I +IN +A L G L G FL L +++K+ +
Sbjct: 168 IN----SNINIMAHLFG-LAGGFLLSFLCVQQKKRR 198
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILPK 58
R + +++LH P F + W L +E G Y+ SG + + +L+ +
Sbjct: 141 RLLTAVFLHQA-PMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALSYLLAAQ 199
Query: 59 NAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
N S+GA+GA+FGL +V++ ++++D R VL +L L+
Sbjct: 200 NQPSLGASGAIFGLLGATVILMRRLNYDMRPVLILLALN 238
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + + YI SG NF+ L +
Sbjct: 207 RLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLS-LSFNTD 265
Query: 60 AVSVGAAGAVFGL 72
VS GA+GA+FGL
Sbjct: 266 TVSAGASGAIFGL 278
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + + YI SG NF+ L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLS-LSFNTD 261
Query: 60 AVSVGAAGAVFGL 72
VS GA+GA+FGL
Sbjct: 262 TVSAGASGAIFGL 274
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + Y+ SG NF L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSFNIS 261
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLE----VLILDELVVEKAAQAPAGTSGT 112
+SVGA+GA+FGL AI ++ +S ++++ +++ VLIL + + + G
Sbjct: 262 TISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLGG 321
Query: 113 FIGGYSVQSINH 124
FIGG+ + I +
Sbjct: 322 FIGGFLITLIGY 333
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + Y+ SG NF L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSFNIS 261
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLE----VLILDELVVEKAAQAPAGTSGT 112
+SVGA+GA+FGL AI ++ +S ++++ +++ VLIL + + + G
Sbjct: 262 TISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLGG 321
Query: 113 FIGGYSVQSINH 124
FIGG+ + I +
Sbjct: 322 FIGGFLITLIGY 333
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + Y+ SG NF L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSFNIS 261
Query: 60 AVSVGAAGAVFGLF-AISVLVKMS--WDRRKVLE----VLILDELVVEKAAQAPAGTSGT 112
+SVGA+GA+FGL AI ++ +S ++++ +++ VLIL + + + G
Sbjct: 262 TISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAHLGG 321
Query: 113 FIGGYSVQSINH 124
FIGG+ + I +
Sbjct: 322 FIGGFLITLIGY 333
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 2 RSIKSLYLHHNFPPW-YQFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H W + F + W L +E G Y SG A + +L+
Sbjct: 133 RLVTSMFTHEAV--WHFAFNMLSLWWLGGPLEAALGRARYLALYFCSGLAGSAFTYLLAD 190
Query: 58 KNAVSVGAAGAVFGLFAIS--VLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIG 115
+ S+GA+GA+FGLF + +L ++ +D R ++ +L+++ + TF
Sbjct: 191 PHTASLGASGAIFGLFGATAVLLRRLQYDMRPIIALLVINLIF-------------TFAP 237
Query: 116 GYSVQSINHI-AILSGALFGVFLNKALNLREKR 147
G+++ HI +++G + G + A RE+R
Sbjct: 238 GFNISWQAHIGGLVAGVIIGYAMVHA--PRERR 268
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH NF + + F K+VE G + Y+ SG NF+ L +
Sbjct: 203 RLITSMFLHFNFEHILMNMLSLFIFGKIVESIVGPLRMLGIYVISGLLGNFIS-LSFNLH 261
Query: 60 AVSVGAAGAVFGL 72
VSVGA+GA+FGL
Sbjct: 262 TVSVGASGAIFGL 274
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ VTA F W L +E G Y+ +G + + +L+
Sbjct: 131 WYRLVTAMFLHQQAYHIAFNMLSLWWLGGPLEAALGRARYLAVYLLAGLGGSALSYLLAA 190
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
+N S+GA+GA+FGL A +VL+ ++++D R V+ +L+L+
Sbjct: 191 QNQPSLGASGAIFGLLGATAVLMRRLNYDMRPVIALLVLN 230
>gi|342874669|gb|EGU76647.1| hypothetical protein FOXB_12836 [Fusarium oxysporum Fo5176]
Length = 572
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+F+T+ F K +E G L Y+ +G N + P
Sbjct: 330 WYRFITSIFMHAGLIHIIFNLLLQLTIAKEMEMAIGPVRFLLVYMSAGIFGNIMGGNYAP 389
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSW-DRR---KVLEVLILDELVVEKAAQAPAGTSGT 112
SVGA+GA+FG+ A+ +L + SW DRR K L +ILD ++ P +
Sbjct: 390 PGQPSVGASGALFGIIALVLLDLLYSWKDRRNPVKDLLFIILDMVIAFVLGLLPGLDNFV 449
Query: 113 FIGGY 117
IGG+
Sbjct: 450 HIGGF 454
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
W+Q VTA F + + EG G L + Y+ SG A N + +LP
Sbjct: 59 WWQLVTAMFVHVGILHIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFLLP 118
Query: 58 KNAVSVGAAGAVFGLFAISVLVK 80
N+VS GA+GA+FG+ +++
Sbjct: 119 ANSVSAGASGALFGIVGTLIIIT 141
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELV 98
Y SG A + +L+ N S+GA+GA+FGLF A +VL+ ++ +D R V+ +L+++ ++
Sbjct: 176 YFVSGLAGGALTYLLAAPNQASLGASGAIFGLFGATAVLMRRLKYDMRPVVILLVINLII 235
Query: 99 V 99
Sbjct: 236 T 236
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH NF + F +E+ G + YI SG N +L P +
Sbjct: 60 RLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLVVYIASGIIGNIGTYLAEPLD 119
Query: 60 AVSVGAAGAVFGLFAISVLVK------MSWDRRKVLEVLIL 94
V VGA+GA+FGLF + V + + D+ K++ L++
Sbjct: 120 YVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLI 160
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDEL 97
Y+ SG A + + +L+ S+GA+GA+FGLF A +VL+ ++++D R ++ +L+++ L
Sbjct: 178 YLVSGLAGSALTYLLEAPTTPSLGASGAIFGLFGATAVLMRRLNYDMRPIIALLVINLL 236
>gi|163838783|ref|YP_001623188.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
gi|162952259|gb|ABY21774.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
Length = 290
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 2 RSIKSLYLHHN-FPPWYQFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H F P F + + L +E G + ++ SG A + LI P
Sbjct: 120 RILTSIFTHSTTFLPHILFNMYSLYILGTVLEPVLGRLRFFALFLVSGLAGSVGVLLIAP 179
Query: 58 KNAVSVGAAGAVFGLF-AISVL-VKMSWDRRKVLEVLILDELV 98
++V VGA+GA+FGLF A+ VL +K D R+++ +L+++ ++
Sbjct: 180 VDSVVVGASGAIFGLFGALFVLQLKRRGDLRQIIVLLVVNAVI 222
>gi|332796652|ref|YP_004458152.1| rhomboid family protein [Acidianus hospitalis W1]
gi|332694387|gb|AEE93854.1| Rhomboid family protein [Acidianus hospitalis W1]
Length = 203
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 38 WLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRR-KVLEVLIL 94
++ + FSG N + P N S GA+G +FG+ + ++ M DR+ + E LIL
Sbjct: 101 YIVFFFSGLLGNIFSLFLFPPNTASAGASGGIFGILSFYIIYDMLKDRKFDLYEFLIL 158
>gi|408397516|gb|EKJ76658.1| hypothetical protein FPSE_03208 [Fusarium pseudograminearum CS3096]
Length = 570
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+F+T+ F K +E G L Y+ +G N + P
Sbjct: 332 WYRFITSIFMHAGIIHIVFNLLLQLTIAKEMEMAIGPVRFLLVYMSAGIFGNIMGGNYAP 391
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSW-DRR---KVLEVLILDELVVEKAAQAPAGTSGT 112
SVGA+GA+FG+ A+ +L + SW DRR K L ++LD ++ P +
Sbjct: 392 PGQPSVGASGALFGIIALVLLDLLYSWKDRRSPVKDLLFIVLDMVIAFVLGLLPGLDNFV 451
Query: 113 FIGGY 117
IGG+
Sbjct: 452 HIGGF 456
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPK- 58
R ++LH + + F F VE+ G L Y+ SG N + + P
Sbjct: 69 RLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNP 128
Query: 59 NAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
N VSVGA+GA+FGLF ++ ++W R
Sbjct: 129 NIVSVGASGALFGLFG--AMISIAWFNRN 155
>gi|331092038|ref|ZP_08340869.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402239|gb|EGG81810.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 203
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH F + F+ ++EEE G+ L Y SG A N + + K
Sbjct: 55 RLITSIFLHFGFAHLMNNMVMLFFLGSILEEEIGSFKYLLLYFVSGVAGNILSAFMDLKT 114
Query: 60 A---VSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIG 115
+S GA+GA+FG+ A+ ++V + + L+ + +VV
Sbjct: 115 GEFVISAGASGAIFGVIGALLIIVTKNHGHLRTLDGRGMVFMVVCSLYH----------- 163
Query: 116 GYSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
G++ ++++A + G L G+ L A L KR
Sbjct: 164 GFTSTGVDNMAHIGGLLSGILL--AFILYRKRQS 195
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPK- 58
R ++LH + + F F VE+ G L Y+ SG N + + P
Sbjct: 74 RLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNP 133
Query: 59 NAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
N VSVGA+GA+FGLF ++ ++W R
Sbjct: 134 NIVSVGASGALFGLFG--AMISIAWFNRN 160
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPK- 58
R ++LH + + F F VE+ G L Y+ SG N + + P
Sbjct: 74 RLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDPNP 133
Query: 59 NAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
N VSVGA+GA+FGLF ++ ++W R
Sbjct: 134 NIVSVGASGALFGLFG--AMISIAWFNRN 160
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S+++H + + A F+ +VE G Y+ SG N + L LP N
Sbjct: 53 RLITSMFVHGGLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLP-N 111
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRKVLE 90
A+SVGA+GA+FGL + D +L
Sbjct: 112 AISVGASGAIFGLIGLLFGAGFRHDTPTILR 142
>gi|423577912|ref|ZP_17554031.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|423607939|ref|ZP_17583832.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
gi|401203958|gb|EJR10789.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|401239513|gb|EJR45940.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
Length = 190
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL +H + P + F +E++ G+ + + SG N +LI+P
Sbjct: 49 RLITSLLVHVDLPHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 109 YIHTGASGGIFGLLGAQLFLMYSRYRSS 136
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHNFPP-----WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + + +LH+ F W +V A +E G Y+ S + + +L+
Sbjct: 113 RLLTAAFLHYGFTHILFNMWALYVVGA---PLEAALGRLRYGALYLLSALGGSVLAYLLS 169
Query: 57 PKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
P N+ + GA+GAVFGLF +V K++ D R V+ +++L+
Sbjct: 170 PLNSATAGASGAVFGLFGALFVVGRKLNMDVRGVVVIIVLN 210
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
Y SG A + + +L+ N ++GA+GA+FGLF A +VL+ ++++D R ++ +L ++
Sbjct: 175 YFVSGLAGSALAYLLAEPNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLAIN 231
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++ H W+ F + W L +E G Y SG A + +L+
Sbjct: 133 RLVTSMFAHQEI--WHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGGALAYLLAS 190
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
+ ++GA+GA+FGLF A +VL+ ++++D R ++ +L+++
Sbjct: 191 PSTATLGASGAIFGLFGATAVLMRRLNYDLRPIIALLVIN 230
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 101 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 157
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 158 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 216
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 217 AHIGGLVSGTLSG 229
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILPK 58
R + S++LH F W L + E G +L+ Y+ SG A + + +LI +
Sbjct: 139 RLVTSMFLHQELM-HIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAGSALTYLIAAQ 197
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRRK 87
N S+GA+GAV+GLF A +VL+ +M++D R
Sbjct: 198 NQPSLGASGAVYGLFGATAVLMRRMNYDMRP 228
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVK-MSWD 84
+VEE G+ L Y+FSG + N + P N +S GA+ ++FGLFA+ L++ +S
Sbjct: 105 TIVEEVYGHFKFLLIYLFSGFSGNLISAFFKP-NTISAGASTSLFGLFAVIALLQVVSGF 163
Query: 85 RRKVLE------VLILDELVVE--KAAQAPAGTSGTFIGG 116
+ + E VLI+ LV + AG G +GG
Sbjct: 164 KHQFTELSKGAVVLIVANLVFNLFMPSVDIAGHLGGLVGG 203
>gi|423398825|ref|ZP_17376026.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|423409727|ref|ZP_17386876.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
gi|401646009|gb|EJS63643.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|401652842|gb|EJS70394.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
Length = 190
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+E++ G+ L + SG + N ++I+P + GA+G++FGL + + S R
Sbjct: 77 IEKQLGHFSFILIFFLSGISGNISSYIIMPLEYIHAGASGSIFGLLGAQLFLLYSRYRSS 136
Query: 88 ------VLEVLILDELV---VEKAAQAPAGTSGTFIGGYSV 119
+ ++IL L+ +A + +G IGG S
Sbjct: 137 RPKEIAIFSIMILILLLFTFFNPSANPISHLTGLIIGGVST 177
>gi|455791418|gb|EMF43234.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 156
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 18 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 74
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 75 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 133
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 134 AHIGGLVSGTLSG 146
>gi|340502629|gb|EGR29302.1| rhomboid family protein, putative [Ichthyophthirius multifiliis]
Length = 255
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + + +LH NF + T F +E G ++ +I S N +N
Sbjct: 92 RFVTAAFLHANFLHIFFNMISTFIFVSSLEHTYGFFTVFYIWILSAIGGNIFSADFATQN 151
Query: 60 AVSVGAAGAVFGLFAISV-LVKMSWDRRKVLE-----VLILDELVVEKAAQAPAGTSGTF 113
+++VGA+ A+FG+ + + + ++W+ + LE VL + L+V +G SG
Sbjct: 152 SIAVGASTALFGMIGLYLAYLILNWNALRFLEDLRCFVLCMAILIVSMVFLLSSGNSGI- 210
Query: 114 IGGYSVQSINHIAILSGALFGV 135
+GG Q+I++ G + G+
Sbjct: 211 MGGEKEQNIDNYGHFGGFITGI 232
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + + LH F + F F +E G + Y SG AAN +LI P
Sbjct: 60 RLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGIAANIATFLIKPLT 119
Query: 60 AVSVGAAGAVFGLFAISV 77
+ VG++GA+FGLF +
Sbjct: 120 FIHVGSSGAIFGLFGFYI 137
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + + LH FP + F F +E G + Y +G AAN + + P
Sbjct: 60 RLVTPILLHSGFPHMLFNSFSLILFGPALERIIGKNKFVILYFSTGIAANIATFFVKPLT 119
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRKVLE 90
+ VG++GA+FGLF + M+ ++ +L
Sbjct: 120 FIHVGSSGAIFGLFGFY--IAMTLFKKHLLS 148
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + +++H F + F F +E G + Y+ +G AAN + I P
Sbjct: 60 RLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAANLATYYIEPLE 119
Query: 60 AVSVGAAGAVFGLFAI 75
VG++GA+FGLF I
Sbjct: 120 FAHVGSSGAIFGLFGI 135
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + L+LH F + + ++ LVE G+ + Y+FSG N +L P
Sbjct: 62 RLVTPLFLHAGFMHVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYLFAPLT 121
Query: 60 AVSVGAAGAVFGLFAISVL 78
VSVGA+ A+FGLF +L
Sbjct: 122 -VSVGASSALFGLFGGMIL 139
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 88 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 144
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 145 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 203
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 204 AHIGGLVSGTLSG 216
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 20/103 (19%)
Query: 16 WYQFVTAAF------------WKL------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +T+ F W L +E G Y+ + + +L+ P
Sbjct: 103 WYRLLTSTFLHFGPVHLLFNMWALYVVGPPLESALGRLRFTALYLAGALGGSVLVYLLAP 162
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILDELV 98
NA + GA+GAVFGLFA ++++ +++ D R VL +++++ ++
Sbjct: 163 LNAATAGASGAVFGLFAATLVIGRRLNLDVRWVLALIVINLVI 205
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 88 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 144
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 145 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 203
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 204 AHIGGLVSGTLSG 216
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH F + F F +E+ G Y+F+G A N +++ P
Sbjct: 61 RLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFAGIAGNVGTFIVDPSA 120
Query: 60 AVS-VGAAGAVFGLFAISVLVKMSWDRRKVLE 90
+ +GA+GA+FG+F + + M W+R+ +++
Sbjct: 121 YYAHLGASGAIFGIFGVYIF--MVWNRKHLID 150
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S +LH W+ F W L +E G Y+ SG A + + +LI
Sbjct: 138 RLVTSTFLHQEV--WHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYLIAD 195
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
++GA+G+VFGL A +VL+ +M++D R V+ +L+++
Sbjct: 196 PAQGTLGASGSVFGLLGATAVLMRRMNYDMRPVIALLVVN 235
>gi|170290879|ref|YP_001737695.1| rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174959|gb|ACB08012.1| Rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 227
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKL-----VEEEEGNCGLWLSYIFSGAAANFV----- 51
R I S++LH W + + VE G + Y+FSG +ANF
Sbjct: 62 RLITSIFLHGG---WIHLIGNMLYLFIFGDNVEAALGRINYLIFYLFSGISANFAHMIAS 118
Query: 52 PWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQA 105
+L +P + +VGA+GA+ G+ ++ + R +++ V++L LV + A
Sbjct: 119 SFLGMPLDLPAVGASGAISGILGAYLIF---YPRARIITVILLGYLVTLRPISA 169
>gi|376283529|ref|YP_005156739.1| hypothetical protein CD31A_0026 [Corynebacterium diphtheriae 31A]
gi|371577044|gb|AEX40712.1| putative membrane protein [Corynebacterium diphtheriae 31A]
Length = 205
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVSMSYRLRRDLTAPLIL 160
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLVTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELV 98
+ SG A + + +L+ N S+GA+GA+FG+F A++VL+ + +D R ++ +L+++ ++
Sbjct: 178 FFVSGLAGSALTYLVAEPNQASLGASGAIFGVFGAMAVLMRRQRYDMRPMIAILVINLII 237
Query: 99 V 99
Sbjct: 238 T 238
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 2 RSIKSLYLH----HNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R+ ++LH H F V VE+ G L Y+ +G N + ++ P
Sbjct: 65 RAFTPIFLHASLMHIFSNMLTLVIVG--PFVEKLFGKGKFLLIYLITGVWGNLLTFIFDP 122
Query: 58 K-NAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
N VSVGA+GA+FGLF V++ W R
Sbjct: 123 NPNVVSVGASGALFGLFG--VMIVSGWYNRN 151
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH +F + F A F +E G ++Y+ SG AN + + P N
Sbjct: 59 RLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFIITYLLSGVLANIGTYFVAPIN 118
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRKVLE 90
+G++ A+FGLF V + M R+ +++
Sbjct: 119 YYHLGSSSAIFGLFG--VYLYMVIYRKDLID 147
>gi|375292001|ref|YP_005126540.1| hypothetical protein CDB402_0026 [Corynebacterium diphtheriae INCA
402]
gi|376241724|ref|YP_005132576.1| hypothetical protein CDCE8392_0024 [Corynebacterium diphtheriae
CDCE 8392]
gi|376289234|ref|YP_005161481.1| hypothetical protein CDC7B_0026 [Corynebacterium diphtheriae C7
(beta)]
gi|371581672|gb|AEX45338.1| putative membrane protein [Corynebacterium diphtheriae INCA 402]
gi|372102630|gb|AEX66227.1| putative membrane protein [Corynebacterium diphtheriae C7 (beta)]
gi|372104966|gb|AEX71028.1| putative membrane protein [Corynebacterium diphtheriae CDCE 8392]
Length = 214
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 76 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 133
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 134 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 169
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 88 RLVTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 144
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 145 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 185
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLVTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|376247391|ref|YP_005139335.1| hypothetical protein CDHC04_0024 [Corynebacterium diphtheriae HC04]
gi|372113959|gb|AEX80017.1| putative membrane protein [Corynebacterium diphtheriae HC04]
Length = 205
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 160
>gi|419861887|ref|ZP_14384511.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387981722|gb|EIK55267.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 205
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 160
>gi|38232669|ref|NP_938436.1| hypothetical protein DIP0027 [Corynebacterium diphtheriae NCTC
13129]
gi|376253148|ref|YP_005141607.1| hypothetical protein CDPW8_0020 [Corynebacterium diphtheriae PW8]
gi|376256043|ref|YP_005143934.1| hypothetical protein CDVA01_0025 [Corynebacterium diphtheriae VA01]
gi|376286557|ref|YP_005159123.1| hypothetical protein CDBH8_0029 [Corynebacterium diphtheriae BH8]
gi|376292146|ref|YP_005163820.1| hypothetical protein CDHC02_0028 [Corynebacterium diphtheriae HC02]
gi|38198927|emb|CAE48538.1| Putative membrane protein [Corynebacterium diphtheriae]
gi|371583891|gb|AEX47556.1| putative membrane protein [Corynebacterium diphtheriae BH8]
gi|372109469|gb|AEX75529.1| putative membrane protein [Corynebacterium diphtheriae HC02]
gi|372116232|gb|AEX68702.1| putative membrane protein [Corynebacterium diphtheriae PW8]
gi|372118560|gb|AEX82294.1| putative membrane protein [Corynebacterium diphtheriae VA01]
Length = 205
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 160
>gi|376250196|ref|YP_005137077.1| hypothetical protein CDHC03_0028 [Corynebacterium diphtheriae HC03]
gi|372111700|gb|AEX77759.1| putative membrane protein [Corynebacterium diphtheriae HC03]
Length = 205
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 160
>gi|302911024|ref|XP_003050402.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
gi|256731339|gb|EEU44689.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
W++F+T+ F K +E G L YI +G N + P
Sbjct: 333 WFRFITSIFLHAGVVHILFNLLVQLTIGKDMERAIGPVRFLLVYISAGIFGNIMGGNYAP 392
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSWDRRKV----LEVLILDELVVEKAAQAPAGTSGT 112
S+GA+GA+FG+ A+++L + SW RK L + LD + P +
Sbjct: 393 PGYASMGASGAIFGIIALTLLDLLYSWKDRKSPVKDLLFIFLDMAIAFVLGLLPGLDNFA 452
Query: 113 FIGGY 117
IGG+
Sbjct: 453 HIGGF 457
>gi|375289754|ref|YP_005124294.1| hypothetical protein CD241_0025 [Corynebacterium diphtheriae 241]
gi|371579425|gb|AEX43092.1| putative membrane protein [Corynebacterium diphtheriae 241]
Length = 204
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 66 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 123
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 124 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 159
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 37/156 (23%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
WY+ VTA F W L + E G Y +G N ++ P
Sbjct: 105 WYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAVYVFSP 164
Query: 58 KNAVSVGAAGAVFGLFA--ISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIG 115
N +S GA+ A+FGLFA ++ ++ D +L +L+++ I
Sbjct: 165 PNQMSAGASTAIFGLFAAIFVIMRRLGRDTSAILPILVIN-----------------LIF 207
Query: 116 GYSVQSINHIAILSGALFGVFLNKALNLREKRDKTL 151
++V I+ L G +FG + L + +TL
Sbjct: 208 TFTVPQISIAGHLGGLVFGGLMALVLAYAPRSHRTL 243
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H +F + F+ + +E++ G+ L + +G + N ++I+P
Sbjct: 49 RLITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGISGNIASYIIMPIE 108
Query: 60 AVSVGAAGAVFGL 72
+ GA+G +FGL
Sbjct: 109 YIHAGASGGIFGL 121
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|376244587|ref|YP_005134826.1| hypothetical protein CDHC01_0025 [Corynebacterium diphtheriae HC01]
gi|372107217|gb|AEX73278.1| putative membrane protein [Corynebacterium diphtheriae HC01]
Length = 205
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 VRSIKSLYLHHNFPPWY----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
+R + +++LH P + F+ F + +E G+ L+YI SG A+ L+
Sbjct: 67 LRMVGTVFLHSG--PTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWD-RRKVLEVLIL 94
P A +VGA+GAV+GL AI V MS+ RR + LIL
Sbjct: 125 PL-APTVGASGAVYGLMAI--FVAMSYRLRRDLTAPLIL 160
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H +FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHASFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFLRDDKKNVLIMIV 473
>gi|212224193|ref|YP_002307429.1| integral membrane protein [Thermococcus onnurineus NA1]
gi|212009150|gb|ACJ16532.1| integral membrane protein [Thermococcus onnurineus NA1]
Length = 202
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVK 80
+E G L +Y+ +G N V +LP N++S GA+GA+FG+ + ++V
Sbjct: 88 LERLFGGRVLVFTYLAAGLVGNLVTLFLLPPNSISAGASGALFGIVGVLIMVS 140
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 24/146 (16%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLVTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMS---WDRRKVLEVLILDELVVEKAAQAPAGTSGT 112
P N +SVGA+GA+FGL+ AI LV M D +K + ++I+ ++ G
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFIL--------TGLLWG 483
Query: 113 FIGGYSVQSINHI-AILSGALFGVFL 137
GG + + HI ++SGAL G+ L
Sbjct: 484 LFGG--IDNAAHIGGLVSGALSGIIL 507
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILP 57
WY+ +TA F W L EG G +L+ Y SG A + + +LI
Sbjct: 134 WYRLLTAMFLHTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGSALTYLIAE 193
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
N S+GA+GA+FGLF A + LV +++ D R V+ +L ++
Sbjct: 194 PNQPSLGASGAIFGLFGATATLVRRLNADMRPVVILLAIN 233
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
+L+E G L YIF+G + + +L P VSVGA+GA+FGLF +++ M
Sbjct: 213 RLIERVYGWKKFILIYIFAGLSGSLASFLFSP--YVSVGASGAIFGLFGAALI--MGLKL 268
Query: 86 RKVLEVLILDELVVEKAAQAPAGTSGTFIGGY 117
+K + L L G S T I Y
Sbjct: 269 KKYINSNFLGSLASVIVVNVIFGFSSTGIDNY 300
>gi|423671683|ref|ZP_17646687.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
gi|401291504|gb|EJR97175.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
Length = 190
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQ--FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL +H + + AF +E++ G+ + + SG N ++I+P
Sbjct: 49 RVITSLLVHVDLQHFLSNSICLFAFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMPLE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK------VLEVLILDELV---VEKAAQAPAGTS 110
+ GA+G +FGL + + S R + ++IL L+ +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSKPRDIAIFSIMILILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|326428155|gb|EGD73725.1| hypothetical protein PTSG_05431 [Salpingoeca sp. ATCC 50818]
Length = 745
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 16 WYQFVTAAF---------------WKLVEEEEGNCG---LWLSYIFSGAAANFVPWLILP 57
WY+F T+ F W E CG + L Y + N V + P
Sbjct: 546 WYRFFTSIFVHAGIIHIFIVATFQWTAAAAVERKCGFLRMLLMYTIACVGGNLVSGIFSP 605
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSWD--RRKVLEVLILDELVVEKAAQAPAGT----- 109
VGAAG VFG+ IS++ + SW R + ++L L++E A GT
Sbjct: 606 LYP-QVGAAGGVFGVLGISIVDLFHSWPVIERPMSKLL---SLLIEIAVLFFIGTLPWID 661
Query: 110 SGTFIGGYSVQSINHIAILSGALFGVF 136
+ IGG+ +++ + L FG F
Sbjct: 662 NFAHIGGFVFGAVSAVVFLPYVTFGKF 688
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHN-----FPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + S++LH+ F W +V +E+ G + Y SG + + +++
Sbjct: 79 RLVTSMFLHYGAMHLLFNMWALYVVG---PPLEQWLGRLRFGVLYALSGLGGSVLVYMLS 135
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVK-MSWDRRKVLEVLILD 95
P N+ + GA+GA+FGLF AI V+ + ++ D R + +++++
Sbjct: 136 PLNSATAGASGAIFGLFGAIFVVARHLNLDVRAIGVIVVIN 176
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 5 KSLYLHHNFPPW-YQFVTAAF-WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVS 62
S+++H F + +T F +L+E+ G+ L Y+ SG AN V N++S
Sbjct: 66 TSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSIS 125
Query: 63 VGAAGAVFGLFAISVLVKMSWDRRK 87
GA+GA+FG+ I V + M+ R
Sbjct: 126 AGASGAIFGI--IGVWIMMAEQYRN 148
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 309 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 365
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 366 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 406
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 491
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 492 AHIGGLVSGTLSG 504
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH++F + + F K+VE G+ + + YI +G NF L +
Sbjct: 203 RLISSIFLHYDFEHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFAS-LSFNID 261
Query: 60 AVSVGAAGAVFGLFAI---SVLVKMSWDRRKVLEVLIL 94
VS GA+GA+FGL + V ++R+ + ++LI+
Sbjct: 262 TVSAGASGAIFGLIGAIFGFMYVGKQFNRKLIGQLLIV 299
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 5 KSLYLHHNFPPW-YQFVTAAF-WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVS 62
S+++H F + +T F +L+E+ G+ L Y+ SG AN V N++S
Sbjct: 66 TSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSIS 125
Query: 63 VGAAGAVFGLFAISVLVKMSWDRRK 87
GA+GA+FG+ I V + M+ R
Sbjct: 126 AGASGAIFGI--IGVWIMMAEQYRN 148
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 473
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 473
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 473
>gi|442805618|ref|YP_007373767.1| exopolysaccharide biosynthesis protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741468|gb|AGC69157.1| exopolysaccharide biosynthesis protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 1118
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 12 NFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFG 71
+FP W A + G + L Y+F A +++LP N +SV G
Sbjct: 752 SFPSWVPASAAIVSDY--KNTGTSSVRLDYVFKAAPETQAAYIVLPGNGISVPDGAETIG 809
Query: 72 LFAISVLVKMSWDRRKVLE 90
L+A S SW R +V++
Sbjct: 810 LWAYSQKTTKSWLRAEVVD 828
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F VE G + YIFSG + +
Sbjct: 376 RLLTNVFVHAGFPHLFFNGFGLIISAIF---VEPILGRIRFLILYIFSGLCGSLASIVWY 432
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVLI 93
P N +SVGA+GA+FGL+ AI LV M D++ VL +++
Sbjct: 433 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV 473
>gi|294827768|ref|NP_711133.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073248|ref|YP_005987565.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|293385613|gb|AAN48151.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353457037|gb|AER01582.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
Length = 226
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 2 RSIKSLYLHHNFPPWY-----QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + ++++H FP + ++A F +L+ G + YIFSG + +
Sbjct: 88 RLLINVFVHAGFPHLFFNGFGLIISAIFVELIL---GRIRFLILYIFSGLCGSLASIVWY 144
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVKMSW----DRRKVLEVL---ILDELV------VEKA 102
P N +SVGA+GA+FGL+ AI LV M D++ VL ++ IL L+ ++ A
Sbjct: 145 P-NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIVTFILTGLLWGLFGGIDNA 203
Query: 103 AQAPAGTSGTFIG 115
A SGT G
Sbjct: 204 AHIGGLVSGTLSG 216
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 5 KSLYLHHNFPPW-YQFVTAAF-WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVS 62
S+++H F + +T F +L+E+ G+ L Y+ SG AN V N++S
Sbjct: 59 TSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFAAPNSIS 118
Query: 63 VGAAGAVFGLFAISVLVKMSWDRRK 87
GA+GA+FG+ I V + M+ R
Sbjct: 119 AGASGAIFGI--IGVWIMMAEQYRN 141
>gi|423515085|ref|ZP_17491566.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
gi|401168048|gb|EJQ75316.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
Length = 182
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 2 RSIKSLYLHHNFPPW-----YQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R I SL +H + + Y FV F +E++ G+ + + SG N ++I+
Sbjct: 49 RVITSLLVHVDLQHFLSNSIYLFV---FGSSIEKQLGHFSFIIIFFLSGILGNISSYIIM 105
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWDRRK------VLEVLILDELV---VEKAAQAPA 107
P + GA+G +FGL + + S R + ++IL L+ +A +
Sbjct: 106 PLEYIHAGASGGIFGLLGAQLFLLYSRYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 108 GTSGTFIGG 116
+G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLISLVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +L+ P NA + GA+GAVFGLF +V K++ D R + ++IL+
Sbjct: 158 YALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMFVVARKLNLDIRGIAAIIILN 214
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +L+ P NA + GA+GAVFGLF +V K++ D R + ++IL+
Sbjct: 158 YALSALGGSVLVYLLSPINAATAGASGAVFGLFGAMFVVARKLNLDIRGIAAIIILN 214
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 31 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 89
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FA+ + V +++++ + ++LI
Sbjct: 90 TISVGASGAIFGLIGSIFAM-MYVSKTFNKKMLGQLLI 126
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +TA F ++VE G Y+ SG + + +L+
Sbjct: 138 WYRLLTAVFLHQELSHILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLVAE 197
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVL 92
N S+GA+GA+FGL V++ ++ D R V+ +L
Sbjct: 198 PNQPSLGASGAIFGLMGAFVVLARRVQLDMRPVVLIL 234
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +TAAF W + +E G Y+ + + +L
Sbjct: 85 WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAA 144
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELV 98
NA S+GA+GA+FGLF A +LV ++ D R + +L+++ ++
Sbjct: 145 PNAASLGASGAIFGLFGATGILVLRVRADVRPFVALLVINLII 187
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 187 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 245
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 246 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 304
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 305 GFIGGLLITLIGYYYKVNRNIFWILL 330
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH++F + + F K+VE G+ + + YI +G NF L +
Sbjct: 109 RLISSIFLHYDFEHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFAS-LSFNID 167
Query: 60 AVSVGAAGAVFGL 72
VS GA+GA+FGL
Sbjct: 168 TVSAGASGAIFGL 180
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 187 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 245
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 246 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 304
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 305 GFIGGLLITLIGYYYKVNRNIFWILL 330
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 143 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 201
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 202 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLISLVILVGVSLFMSNINIVAHIG 260
Query: 112 TFIGGYSVQSINH 124
FIGG + I +
Sbjct: 261 GFIGGLLITLIGY 273
>gi|52144990|ref|YP_081838.1| rhomboid-like protein [Bacillus cereus E33L]
gi|51978459|gb|AAU20009.1| conserved hypothetical protein; probable rhomboid-like protein
[Bacillus cereus E33L]
Length = 190
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G+ + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRR---------KVLEVLILDELVVEKAAQAPAGTS 110
+ GA+G +FGL + + S R V+ ++L +A + +
Sbjct: 109 YIHSGASGGIFGLLGAQLFLMYSRYRSSNPKDIAIFSVMICILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|116492498|ref|YP_804233.1| membrane-associated serine protease [Pediococcus pentosaceus ATCC
25745]
gi|421894340|ref|ZP_16324829.1| rhomboid family protein [Pediococcus pentosaceus IE-3]
gi|116102648|gb|ABJ67791.1| Membrane-associated serine protease [Pediococcus pentosaceus ATCC
25745]
gi|385272644|emb|CCG90201.1| rhomboid family protein [Pediococcus pentosaceus IE-3]
Length = 229
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5 KSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVS 62
S+++H F + A ++ +L+E G+ L YIFSG AN + N++S
Sbjct: 66 TSMFIHIGFEHILFNMIALYFIGRLLERMIGHWKFVLIYIFSGLFANLASLALSNPNSIS 125
Query: 63 VGAAGAVFGLFAI 75
GA+GA+FG+ +
Sbjct: 126 AGASGAIFGIIGV 138
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 55 ILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+L NA++ GA+GAVFGLF + +V K++ D R V+ +++L+
Sbjct: 162 LLTLNALTAGASGAVFGLFGATFVVGRKLNMDVRSVMAIIVLN 204
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 87 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 145
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FA+ + V +++++ + ++LI
Sbjct: 146 TISVGASGAIFGLIGSIFAM-MYVSKTFNKKMLGQLLI 182
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 24 FWKLVEEEEGNCGLWLSY----IFSGAAANFVPWLILPKNAVSVGAAGAVFGLF--AISV 77
F VE G+ +Y +FSGA V +L+ +VGA+GAVFGLF A+ +
Sbjct: 148 FGPFVERALGSARYVAAYLTMAVFSGA----VVYLLTDPRTFTVGASGAVFGLFGYALVL 203
Query: 78 LVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSV 119
LV+ D R +L +L ++ ++ + G G FI G ++
Sbjct: 204 LVRAKQDVRTLLVLLAVNGVISLAPNISWQGHLGGFIAGLTL 245
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I ++LH + F F +E+ G L+Y+ + AN + + P +
Sbjct: 62 RLITPIFLHGGLMHMLFNSFSLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMS 121
Query: 60 AVSVGAAGAVFGLFAISVLVKM 81
+GA+GA+FGLF I V + M
Sbjct: 122 YAHLGASGAIFGLFGIYVFMVM 143
>gi|357142172|ref|XP_003572482.1| PREDICTED: uncharacterized protein LOC100827999 [Brachypodium
distachyon]
Length = 364
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 18 QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISV 77
Q +F E++ G + + Y+ SG + + L LP +VSVGA+G V GL V
Sbjct: 174 QLSLCSFGVRFEQQFGFLRIVIIYLLSGLGGSVLSALFLPAGSVSVGASGPVLGLIGAMV 233
Query: 78 L-VKMSW----DRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGY 117
+ ++W +R+ L +L L ++ P + T IGG+
Sbjct: 234 SEIAINWNAYSNRKPALAILGLIAVINMVMGIFPHTDNFTNIGGF 278
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +TAAF W + +E G Y+ + + +L
Sbjct: 178 WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAA 237
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELVV 99
NA S+GA+GA+FGLF A +LV ++ D R + +L+++ ++
Sbjct: 238 PNAASLGASGAIFGLFGATGILVLRVRADVRPFVALLVINLIIT 281
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
+LVE G Y+ SG N + ++ AVS GA+GA+FG++ L+ W +
Sbjct: 95 RLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGDRAVSGGASGAIFGVYG--ALLAFLWQQ 152
Query: 86 RKVLE 90
R L+
Sbjct: 153 RDTLD 157
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ +TAAF W + +E G Y+ + + +L
Sbjct: 178 WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGSVASYLFAA 237
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILDELVV 99
NA S+GA+GA+FGLF A +LV ++ D R + +L+++ ++
Sbjct: 238 PNAASLGASGAIFGLFGATGILVLRVRADVRPFVALLVINLIIT 281
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|345000844|ref|YP_004803698.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344316470|gb|AEN11158.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 299
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 2 RSIKSLYLHHNFPPWY-QFVTAAFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R S++LH W+ F W L +E G Y+ SG A + + + +
Sbjct: 137 RLFTSMFLHQEV--WHIAFNMLGLWWLGGPLEAALGRVRYLALYLLSGLAGSALTYAVSD 194
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
S+GA+GAVFGL A +VL+ +M++D R V+ +L+++
Sbjct: 195 PAQGSLGASGAVFGLLGATAVLMRRMNYDMRPVIALLVVN 234
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL 72
+SVGA+GA+FGL
Sbjct: 263 TISVGASGAIFGL 275
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|238922477|ref|YP_002935990.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
gi|238874149|gb|ACR73856.1| hypothetical protein EUBREC_0051 [Eubacterium rectale ATCC 33656]
Length = 192
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 20 VTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN---AVSVGAAGAVFGL 72
V A ++VE+ G+ L ++++ SG + + ++++ N AVS GA+GA+FGL
Sbjct: 66 VLGAVGQIVEKAMGHVKLLITFLVSGMCGSVLSYIVMLYNNDYAVSAGASGAIFGL 121
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 55 ILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+L NA++ GA+GAVFGLF + +V K++ D R V+ +++L+
Sbjct: 162 LLTFNALTAGASGAVFGLFGATFVVGRKLNMDVRSVMAIIVLN 204
>gi|407927474|gb|EKG20366.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 557
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 9 LHHNFPPWYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANF 50
LH N WY+F+ F + +E+ G+ +L Y +G N
Sbjct: 285 LHPN--QWYRFIVPIFLHGGLIHIGFNMLVQVTVGRDMEKLIGSIRFFLVYFAAGIFGNV 342
Query: 51 VPWLILPKNAVSVGAAGAVFGLFAISVL-VKMSWDRR----KVLEVLILDELVVEKAAQA 105
+ P + SVGA+GA+FG+ A+++L + W R + L ++LD ++
Sbjct: 343 LGANYAPNGSPSVGASGAIFGIIALTLLDLLYHWKERLNPKRELLFIMLDVVIAFVLGLL 402
Query: 106 PAGTSGTFIGGY 117
P + IGG+
Sbjct: 403 PGLDNFAHIGGF 414
>gi|389576264|ref|ZP_10166292.1| putative membrane protein [Eubacterium cellulosolvens 6]
gi|389311749|gb|EIM56682.1| putative membrane protein [Eubacterium cellulosolvens 6]
Length = 215
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLI---LPKNAVSVGAAGAVFGLFAISVLVKMSWD 84
+E+ G+ L YI G A N LI P+ AVS GA+GAVF + + + + W
Sbjct: 92 LEQHCGHIRFLLIYILGGLAGNGFSLLIEGGSPQQAVSAGASGAVFAILGGYIALALIWK 151
Query: 85 RRKVLEV 91
R V +
Sbjct: 152 RTGVANI 158
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL 72
+SVGA+GA+FGL
Sbjct: 263 TISVGASGAIFGL 275
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 143 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 201
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FA+ + V +++++ + ++LI
Sbjct: 202 TISVGASGAIFGLIGSIFAM-MYVSKTFNKKMLGQLLI 238
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR---RKVLEVLILDELVVEKAAQAPAGTS-----G 111
+SVGA+GA+FGL S+ M + +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIG-SIFAMMYVSKTFNKKMLGQLLIALVILVGVSLFMSNINIVAHIG 321
Query: 112 TFIGGYSVQSINHIAILSGALFGVFL 137
FIGG + I + ++ +F + L
Sbjct: 322 GFIGGLLITLIGYYYKVNRNVFWILL 347
>gi|403509769|ref|YP_006641407.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802627|gb|AFR10037.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 204
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 53 WLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGT 112
WL+ P V+VGA+G VFG F +VL + R+ ++++I+ +V+ GT
Sbjct: 101 WLLTPSGVVTVGASGLVFGYFGYTVLRGII--ERRTVDIVIMICVVIFY---------GT 149
Query: 113 FIGGYSVQ--SINHIAILSGALFGVFLNKALNLREKRDK 149
I G Q ++ A L G L G+ AL REK +
Sbjct: 150 MIWGVLPQHPGVSWQAHLFGFLGGLLAAYALPRREKPGR 188
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 24 FWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAI 75
F +E+ G L YI SG AN + +LP GA+GA+FGLF +
Sbjct: 84 FGPALEKMLGKSKFLLLYIGSGICANIATFFVLPAMYSHAGASGAIFGLFGM 135
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 23 AFW---KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV 79
AFW +LVE G+ + Y+ SG N + + AVS GA+GA+FG++ L+
Sbjct: 94 AFWDGGQLVERMYGHWRYLVIYLVSGLVGNLLSLVWQGNQAVSGGASGAIFGIYG--ALI 151
Query: 80 KMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIA----ILSGALFGV 135
W R +L+ L A + T G+ + +I++ A ++G L G+
Sbjct: 152 VFLWQERALLDRREFRWLF----GGACVFATATIALGFMIPAIDNAAHIGGFVAGMLAGL 207
Query: 136 FLNKALNLRE 145
L + L +E
Sbjct: 208 LLMRGLRPQE 217
>gi|423596872|ref|ZP_17572897.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|423602237|ref|ZP_17578237.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|423672513|ref|ZP_17647452.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
gi|401218537|gb|EJR25214.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|401226138|gb|EJR32679.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|401311619|gb|EJS16905.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
Length = 190
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQ--FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL +H + + F +E++ G+ + + SG N ++I+P
Sbjct: 49 RVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMPLE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK------VLEVLILDELV---VEKAAQAPAGTS 110
+ GA+G +FGL + + S R + ++IL L+ +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSKPRDIAIFSIMILILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|365156793|ref|ZP_09353089.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
gi|363626850|gb|EHL77815.1| hypothetical protein HMPREF1015_01990 [Bacillus smithii 7_3_47FAA]
Length = 198
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S+++H F ++ F +E L Y+ SG AN +L +P
Sbjct: 60 RLISSIFIHRGFSHFFFNTITLVLFAPPLEIMLKKIKFLLLYLLSGIFANAATFLFMPLT 119
Query: 60 AVSVGAAGAVFGLF 73
+G++GA+FGLF
Sbjct: 120 YTHIGSSGAIFGLF 133
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 2 RSIKSLYLHHNFPPWY--QFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R +++LH F + F F +E+ G Y+ SG N ++ +
Sbjct: 59 RVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYDSS 118
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWDRRKVLEVLILDELVVE 100
S+GA+GA+FG+F A LV + +L LIL +V+
Sbjct: 119 YASLGASGAIFGIFGAFGALVYYTRRTMPMLRKLILPIIVIS 160
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL----FAISVLVKMSWDRRKVLEVLI 93
+SVGA+GA+FGL FA+ + V +++++ + ++LI
Sbjct: 263 TISVGASGAIFGLIGSIFAM-MYVSKTFNKKMLGQLLI 299
>gi|28572184|ref|NP_788964.1| integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410315|emb|CAD66701.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
Length = 207
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 2 RSIKSLYLHHNFPPWYQ-FVTAAFWKLVEEEEGNCGLW---LSYIFSGAAANFVPWLILP 57
R S++LH F P + F + W L E G W Y SG A + P
Sbjct: 55 RIFTSMFLHSTFTPLHLLFNMYSLWWLGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQP 114
Query: 58 KNAVSVGAAGAVFGLFAISVLVKMS 82
N +++GA+G +FGL A +++++
Sbjct: 115 YNTLTLGASGGIFGLLAAFIVLRID 139
>gi|163938239|ref|YP_001643123.1| rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|423514497|ref|ZP_17491004.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
gi|163860436|gb|ABY41495.1| Rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|402442072|gb|EJV74014.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
Length = 182
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQ--FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL +H + + F +E++ G+ + + SG N ++I+P
Sbjct: 49 RVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMPLE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK------VLEVLILDELV---VEKAAQAPAGTS 110
+ GA+G +FGL + + S R + ++IL L+ +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSKPRDIAIFSIMILILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|301051972|ref|YP_003790183.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
gi|300374141|gb|ADK03045.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
Length = 156
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAF--WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 15 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 74
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRR---------KVLEVLILDELVVEKAAQAPAGTS 110
+ GA+G +FGL + + S R ++ ++L +A + +
Sbjct: 75 YIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLT 134
Query: 111 GTFIGG 116
G IGG
Sbjct: 135 GLIIGG 140
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 31/123 (25%)
Query: 4 IKSLYLHHNFPP-----------WYQFVTAAFWKL------------------VEEEEGN 34
++ L L+ +PP WY+ +TA F +E G
Sbjct: 94 VQDLILYGAWPPVDPTSGVAEGQWYRLLTATFLHQNVMHIGFNMLSLWWIGPGLEVALGR 153
Query: 35 CGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAIS--VLVKMSWDRRKVLEVL 92
Y+ S + + +L+ NA S+GA+GAVFGL + ++ ++ +D R ++ ++
Sbjct: 154 VRFLAVYLLSALGGSALSFLLANPNAGSLGASGAVFGLLGATFVLMRRLRYDSRPIVAII 213
Query: 93 ILD 95
+L+
Sbjct: 214 VLN 216
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I +++H F + F F +E G + Y+ G AAN + + P
Sbjct: 71 RLITPIFVHLGFAHLLFNSFSLILFAPPLERMLGKFKFTIIYLTCGIAANIATYFLKPLT 130
Query: 60 AVSVGAAGAVFGLFAISV 77
VGA+GA+FGLF I V
Sbjct: 131 YNHVGASGAIFGLFGIYV 148
>gi|28492976|ref|NP_787137.1| hypothetical protein TWT009 [Tropheryma whipplei str. Twist]
gi|28476016|gb|AAO44106.1| unknown [Tropheryma whipplei str. Twist]
Length = 212
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 2 RSIKSLYLHHNFPPWYQ-FVTAAFWKLVEEEEGNCGLW---LSYIFSGAAANFVPWLILP 57
R S++LH F P + F + W L E G W Y SG A + P
Sbjct: 60 RIFTSMFLHSTFTPLHLLFNMYSLWWLGSNLEQRIGSWRFLALYFISGLGAAVGIVYLQP 119
Query: 58 KNAVSVGAAGAVFGLFAISVLVKMS 82
N +++GA+G +FGL A +++++
Sbjct: 120 YNTLTLGASGGIFGLLAAFIVLRID 144
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL 72
+SVGA+GA+FGL
Sbjct: 263 TISVGASGAIFGL 275
>gi|402554172|ref|YP_006595443.1| rhomboid family protein [Bacillus cereus FRI-35]
gi|401795382|gb|AFQ09241.1| rhomboid family protein [Bacillus cereus FRI-35]
Length = 190
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 23 AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMS 82
A +E++ G+ + + SG N +LI+P + GA+G +FGL + + S
Sbjct: 72 ALGSCIEKQLGHLSFIIIFFLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQLFLLYS 131
Query: 83 WDR 85
R
Sbjct: 132 RYR 134
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S+++H F V A KL E G+ L Y+FSG A + + +L P+
Sbjct: 63 RLLTSMFIHIGFTHLLFNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGPE- 121
Query: 60 AVSVGAAGAVFGL 72
+S GA+GA+FGL
Sbjct: 122 -LSAGASGAIFGL 133
>gi|49476749|ref|YP_034576.1| rhomboid-like protein [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118475997|ref|YP_893148.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|196036042|ref|ZP_03103443.1| rhomboid family protein [Bacillus cereus W]
gi|196041125|ref|ZP_03108421.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|196046176|ref|ZP_03113403.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|218901442|ref|YP_002449276.1| rhomboid family protein [Bacillus cereus AH820]
gi|225862291|ref|YP_002747669.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|376264269|ref|YP_005116981.1| rhomboid family protein [Bacillus cereus F837/76]
gi|49328305|gb|AAT58951.1| conserved hypothetical protein, probable rhomboid-like protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118415222|gb|ABK83641.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|195991411|gb|EDX55378.1| rhomboid family protein [Bacillus cereus W]
gi|196022921|gb|EDX61601.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|196028060|gb|EDX66671.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|218538397|gb|ACK90795.1| rhomboid family protein [Bacillus cereus AH820]
gi|225790775|gb|ACO30992.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|364510069|gb|AEW53468.1| Rhomboid family protein [Bacillus cereus F837/76]
Length = 190
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRR---------KVLEVLILDELVVEKAAQAPAGTS 110
+ GA+G +FGL + + S R ++ ++L +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|423553832|ref|ZP_17530159.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
gi|401182652|gb|EJQ89784.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
Length = 190
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRR---------KVLEVLILDELVVEKAAQAPAGTS 110
+ GA+G +FGL + + S R ++ ++L +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 38 WLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDEL 97
+L F+ A + + ++L +N+VSVGA+GA+FGL ++L+ +R ++ + IL+ +
Sbjct: 223 YLCIYFTSAITSSLLSVLLNENSVSVGASGAIFGLLG-AILIFSIKERHRIKKGYILNLV 281
Query: 98 VVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLRE 145
+ + G++++ I+++ + G L G+ + + L +++
Sbjct: 282 GI---------IILILMSGFTIRGIDNLGHIGGFLGGLIMGRILMIKK 320
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL 72
+SVGA+GA+FGL
Sbjct: 263 TISVGASGAIFGL 275
>gi|167634174|ref|ZP_02392496.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170687776|ref|ZP_02878991.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|254686591|ref|ZP_05150450.1| rhomboid family protein [Bacillus anthracis str. CNEVA-9066]
gi|254723569|ref|ZP_05185356.1| rhomboid family protein [Bacillus anthracis str. A1055]
gi|254739716|ref|ZP_05197409.1| rhomboid family protein [Bacillus anthracis str. Kruger B]
gi|421641042|ref|ZP_16081606.1| rhomboid family protein [Bacillus anthracis str. BF1]
gi|167530488|gb|EDR93203.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170668303|gb|EDT19051.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|403391827|gb|EJY89099.1| rhomboid family protein [Bacillus anthracis str. BF1]
Length = 190
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRR---------KVLEVLILDELVVEKAAQAPAGTS 110
+ GA+G +FGL + + S R ++ ++L +A + +
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLT 168
Query: 111 GTFIGG 116
G IGG
Sbjct: 169 GLIIGG 174
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 26 KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
+LVE G+ Y+ SG N V +I AVS GA+GA+FG++ L+ W
Sbjct: 91 QLVERMYGHLRFAGIYVLSGLTGNLVSLVIQGNAAVSGGASGAIFGVYG--ALLTFLWRE 148
Query: 86 RKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVF 136
R+ + L A + T + G+ V I++ A + G L G+F
Sbjct: 149 RQSIARHEFRWLF----WGASVFSVATIVFGFIVPGIDNSAHIGGFLTGIF 195
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHN-----FPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + S++LH+ F W +V +E+ G + Y SG + + +++
Sbjct: 79 RLVTSMFLHYGAMHLLFNMWALYVVG---PPLEKWLGLTRFGVLYALSGLGGSVLVYMLS 135
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVK-MSWDRRKVLEVLILD 95
P N+ + GA+GA+FGLF AI V+ + ++ D R + +++++
Sbjct: 136 PLNSATAGASGAIFGLFGAIFVVARHLNLDVRAIGVIVVIN 176
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 2 RSIKSLYLHHNFPPW-YQFVTAAFWKLVEEEEGNCGLWLS-YIFSGAAANFVPWLILPKN 59
R I ++LH F +T F + E G +L+ Y+ SG A N + P +
Sbjct: 52 RLITPMFLHIGFEHIVLNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNLASFAFNP-D 110
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDR--------RKVLEVLILDELVVEKAAQAPAGTSG 111
A+S GA+ A+FGLF I +++ S+ R+ L +++L+ + + AG G
Sbjct: 111 ALSAGASTALFGLFGIYLMMGESFSSNPYIRAMGRQFLLLVVLNIMFGFYGSVDLAGHIG 170
Query: 112 TFIGGY 117
+GG+
Sbjct: 171 GLVGGF 176
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHN-----FPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + S +LH+ F W +V +E+ G Y S + + +L+
Sbjct: 70 RLVTSAFLHYGVMHLLFNMWALYVVG---PPLEQWLGRLRYGALYALSALGGSVLVYLLT 126
Query: 57 PKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
P N + GA+GA+FGLF +V K++ D R + V+I++
Sbjct: 127 PINTPTAGASGAIFGLFGAIFVVARKLNLDVRMIAAVVIIN 167
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I ++LH F + F F +E+ G L Y+ G AN +L+ P +
Sbjct: 60 RFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGTLANVATYLVNPLS 119
Query: 60 AVSVGAAGAVFGLFA 74
VG++GA+F LF
Sbjct: 120 YSHVGSSGAIFALFG 134
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA--AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIITSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGLF-AISVLVKMSWD-RRKVLEVLILDELVVEKAAQAPAGTS-----GT 112
+SVGA+GA+FGL AI ++ +S +K+L L++ +++ + + + G
Sbjct: 263 TISVGASGAIFGLIGAIFAMMYVSKTFNKKMLGQLMIALVILIGVSLFMSNINIVAHIGG 322
Query: 113 FIGGYSVQSINHIAILSGALFGVFL 137
F+GG + I + ++ LF + L
Sbjct: 323 FVGGLLITLIGYYFNVNRKLFWILL 347
>gi|30260425|ref|NP_842802.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47525506|ref|YP_016855.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49183268|ref|YP_026520.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|165871540|ref|ZP_02216186.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167640337|ref|ZP_02398602.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170707901|ref|ZP_02898351.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|177653388|ref|ZP_02935598.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190567414|ref|ZP_03020328.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227812917|ref|YP_002812926.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229604752|ref|YP_002864876.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|254734931|ref|ZP_05192643.1| rhomboid family protein [Bacillus anthracis str. Western North
America USA6153]
gi|254754913|ref|ZP_05206948.1| rhomboid family protein [Bacillus anthracis str. Vollum]
gi|254756956|ref|ZP_05208984.1| rhomboid family protein [Bacillus anthracis str. Australia 94]
gi|421511441|ref|ZP_15958311.1| rhomboid family protein [Bacillus anthracis str. UR-1]
gi|30253746|gb|AAP24288.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47500654|gb|AAT29330.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49177195|gb|AAT52571.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|164712644|gb|EDR18175.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167511739|gb|EDR87120.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170127259|gb|EDS96136.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|172081428|gb|EDT66501.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190561541|gb|EDV15512.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227004612|gb|ACP14355.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229269160|gb|ACQ50797.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|401818519|gb|EJT17719.1| rhomboid family protein [Bacillus anthracis str. UR-1]
Length = 190
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAF--WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSS 136
>gi|386853198|ref|YP_006271211.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
gi|359840702|gb|AEV89143.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
Length = 268
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ TA F + +E G Y+ +G N +L+ P
Sbjct: 105 WYRLFTAMFVHYGVVHLLLNMMVLLQLGRYLEARLGPIRFLALYLLAGFGGNVACYLLTP 164
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+N S GA+ AVFGL ++V K++ D R ++ +L+++
Sbjct: 165 QNQPSGGASTAVFGLIIGIIIVNRKLALDVRSLIPLLVVN 204
>gi|352681588|ref|YP_004892112.1| membrane associated serine protease [Thermoproteus tenax Kra 1]
gi|350274387|emb|CCC81032.1| membrane associated serine protease, rhomboid family [Thermoproteus
tenax Kra 1]
Length = 182
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 24 FWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSW 83
+++ E G ++++ + A NF +LP +S GA+G +FGLF+ V+ M
Sbjct: 70 LYRIYNSEAGPVE-YVAFFAAALAGNFATVAVLPPRTLSAGASGGIFGLFSYYVVADMMK 128
Query: 84 DRR 86
R+
Sbjct: 129 SRQ 131
>gi|423393314|ref|ZP_17370540.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
gi|401630233|gb|EJS48040.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G+ + + SG N ++I+P +
Sbjct: 49 RVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYIIMPLD 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSS 136
>gi|386734109|ref|YP_006207290.1| rhomboid family protein [Bacillus anthracis str. H9401]
gi|384383961|gb|AFH81622.1| Rhomboid family protein [Bacillus anthracis str. H9401]
Length = 190
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAF--WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 49 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSS 136
>gi|65317677|ref|ZP_00390636.1| COG0705: Uncharacterized membrane protein (homolog of Drosophila
rhomboid) [Bacillus anthracis str. A2012]
Length = 167
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAF--WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G + + SG N +LI+P
Sbjct: 26 RLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHE 85
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 86 YIHAGASGGIFGLLGAQLFLLYSRYRSS 113
>gi|423421597|ref|ZP_17398686.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
gi|401097259|gb|EJQ05287.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I SL++H + + F +E++ G+ + + SG N ++I+P +
Sbjct: 49 RVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYIIMPLD 108
Query: 60 AVSVGAAGAVFGLFAISVLVKMSWDRRK 87
+ GA+G +FGL + + S R
Sbjct: 109 YIHAGASGGIFGLLGAQLFLLYSRYRSS 136
>gi|373471259|ref|ZP_09562320.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371760666|gb|EHO49340.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 210
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 2 RSIKSLYLHHNFPPWYQ--FVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVP---WLIL 56
R I S+++H + +E+ G+ ++ Y+ SG AN +
Sbjct: 57 RLITSMFMHFGIEHIANNMLILVLLGGKLEDIMGHFKFFIIYMLSGILANLASDWAQTMT 116
Query: 57 PKNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGG 116
AVS GA+GA+FG+ ++L + + K+ + L L ++VV AG
Sbjct: 117 GDFAVSAGASGAIFGVVG-ALLASLVLSKGKI-KNLSLYQIVVSLGLMLYAG-------- 166
Query: 117 YSVQSINHIAILSGALFGVFLNKALNLREKRDK 149
+ +++IA + GA+ GVF+ L +K+ +
Sbjct: 167 FKTTGVDNIAHVGGAVSGVFIGLILYKEDKKSE 199
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 2 RSIKSLYLHHNF--PPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + ++LH + + F F +E+ G +++ +G AN +L P N
Sbjct: 62 RLVTPIFLHGDLMHALFNSFSLVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPLN 121
Query: 60 AVSVGAAGAVFGLFAISVLVKM------SWDRRKVLEVLILDELVV---EKAAQAPAGTS 110
+GA+GA+FGLF I + + + +++ +++ LV+ A
Sbjct: 122 YTHLGASGAIFGLFGIYTFMVLFRKHLIDYSSSQMITTILIISLVMTFLRNNINIYAHIF 181
Query: 111 GTFIGGYSVQSI 122
G FIGG+++ +
Sbjct: 182 G-FIGGFAIAPL 192
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 154 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 210
>gi|297193265|ref|ZP_06910663.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151714|gb|EFH31321.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 299
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ TA F W + +EE G Y+ SG A + +LI
Sbjct: 135 WYRLATAMFLHETTWHIFFNMLLLWWLGGPLEEALGRVRYLALYLISGLAGSAFTYLIES 194
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILDELVV 99
S+GA+GA++GL +V++ +M D R ++ VLI LV+
Sbjct: 195 PAQGSLGASGAIYGLLGATVVLMRRMRQDLRPIM-VLIAINLVI 237
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 16 WYQFVTAAF-----WKL-------------VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
WY+ VT F W + +E G Y+ SG A + + +L+
Sbjct: 134 WYRLVTTMFTHEEIWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVLAYLLAS 193
Query: 58 KNAVSVGAAGAVFGLF-AISVLV-KMSWDRRKVLEVLILD 95
++GA+GA+FGLF A + LV +++ D R V+ +L++
Sbjct: 194 PTTATLGASGAIFGLFGATAALVRRLNADMRPVVILLVIS 233
>gi|42779350|ref|NP_976597.1| rhomboid family protein [Bacillus cereus ATCC 10987]
gi|42735265|gb|AAS39205.1| rhomboid family protein [Bacillus cereus ATCC 10987]
Length = 190
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRR- 86
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHLSFIIIFFLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSS 136
Query: 87 --------KVLEVLILDELVVEKAAQAPAGTSGTFIGG 116
++ ++L +A + +G IGG
Sbjct: 137 NPRDIAIFSIMICILLLFTFFNPSANPISHLTGLIIGG 174
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 24/145 (16%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA-AFWKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
R + S++LH + W+ F A W + +E G Y+ SG + + +L+
Sbjct: 125 RLLTSVFLHVEW--WHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSALVYLLTA 182
Query: 58 KNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFI- 114
N ++GA+GAV GL +V++ ++ ++ R VL L L LV TF+
Sbjct: 183 PNTPTLGASGAVCGLLGATVVLARRLRYEMRPVLVTLGLMLLV-------------TFVP 229
Query: 115 -GGYSVQSINHI-AILSGALFGVFL 137
GG SV HI +++GAL + L
Sbjct: 230 FGGLSVSWQAHIGGLVTGALVALGL 254
>gi|47567486|ref|ZP_00238198.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
gi|47555888|gb|EAL14227.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
Length = 190
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRR- 86
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHFSFLIIFFLSGILGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSS 136
Query: 87 --------KVLEVLILDELVVEKAAQAPAGTSGTFIGG 116
++ ++L +A + +G IGG
Sbjct: 137 NPRDIAIFSIMICILLLFTFFNPSANPISHLTGLIIGG 174
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 119 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 175
>gi|330924089|ref|XP_003300510.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
gi|311325347|gb|EFQ91395.1| hypothetical protein PTT_11758 [Pyrenophora teres f. teres 0-1]
Length = 545
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 11 HNFPP--WYQFVTAAF---------------WKL---VEEEEGNCGLWLSYIFSGAAANF 50
H+ P W++F+T F W L +E+E G L Y +G
Sbjct: 261 HSHEPNQWWRFITPIFLHAGIIHIGFNMLLQWTLGRDMEKEIGPLRFLLVYFSAGIFGFV 320
Query: 51 VPWLILPKNAVSVGAAGAVFGLFAISVL-VKMSWDRR----KVLEVLILDELVVEKAAQA 105
+ P+ SVG +G++FG+ A+++L + +W R K L L+LD +
Sbjct: 321 LGGNYAPEGLTSVGCSGSLFGILALTMLDLLYNWSTRRSPVKDLLFLLLDMAIAFVIGLL 380
Query: 106 PAGTSGTFIGGYSVQSINHIAIL 128
P + + IGG+ + + I I+
Sbjct: 381 PGLDNFSHIGGFCMGLVLGICII 403
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 117 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 173
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + LH F + A ++ LVE+ G+ Y+F+G A + +L P
Sbjct: 235 RFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIYLFAGFAGSLASFLFSP-- 292
Query: 60 AVSVGAAGAVFGLFA 74
+VS GA+GA+FG F
Sbjct: 293 SVSAGASGAIFGCFG 307
>gi|217957809|ref|YP_002336353.1| rhomboid family protein [Bacillus cereus AH187]
gi|375282339|ref|YP_005102774.1| rhomboid family protein [Bacillus cereus NC7401]
gi|423357185|ref|ZP_17334784.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|423376166|ref|ZP_17353480.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|423572350|ref|ZP_17548557.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
gi|217066635|gb|ACJ80885.1| rhomboid family protein [Bacillus cereus AH187]
gi|358350862|dbj|BAL16034.1| rhomboid family protein [Bacillus cereus NC7401]
gi|401075813|gb|EJP84182.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|401089157|gb|EJP97329.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|401197717|gb|EJR04645.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
Length = 190
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHFSFIIIFFLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYR 134
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 119 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 175
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 119 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 175
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
VE G L Y+FS + ++ P N++SVGA+GA+FGLF ++LV +R +
Sbjct: 215 VEFAYGKIKYILIYLFSALGGSIFSYIFSP-NSISVGASGAIFGLFG-AMLVFGVKNRHR 272
Query: 88 V 88
+
Sbjct: 273 I 273
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 119 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 175
>gi|206977078|ref|ZP_03237978.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|222094009|ref|YP_002528060.1| rhomboid family protein [Bacillus cereus Q1]
gi|206744727|gb|EDZ56134.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|221238058|gb|ACM10768.1| rhomboid family protein [Bacillus cereus Q1]
Length = 190
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDR 85
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHFSFIIIFFLSGILGNMSSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYR 134
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 27 LVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFA----ISVLVKMS 82
+VE GN L Y+F+G A + ++ P ++S GA+GA+FG F V+
Sbjct: 256 VVERLYGNVRFLLIYLFAGFAGSLTSFVFSP--SLSAGASGAIFGCFGALLYFGVIHPGL 313
Query: 83 WDRRKVLEVLILDELVVEKAAQAP----AGTSGTFIGGYSVQSINHIAILSGALF-GVFL 137
+ R + +L++ + + P AG G IGG+ I H LF G+FL
Sbjct: 314 FFRTMGMNILVVLGINLALGFTLPGIDNAGHIGGLIGGFLAAGILHFPGKKKILFQGLFL 373
>gi|197286913|ref|YP_002152785.1| hypothetical protein PMI3094 [Proteus mirabilis HI4320]
gi|194684400|emb|CAR46078.1| putative membrane protein [Proteus mirabilis HI4320]
Length = 194
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 58 KNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGY 117
+NA+ VGA+G +FGL+ S+L+ ++ R K+++++I ++ + A G G+
Sbjct: 105 RNAIHVGASGWIFGLW--SLLIAHAFTRHKIIDIVIALFVLFYYGSMAYGLIPGQL--GF 160
Query: 118 SVQSINHIA-ILSGALF 133
S +S HIA ++SG L+
Sbjct: 161 STES--HIAGVISGLLY 175
>gi|410092561|ref|ZP_11289084.1| rhomboid family protein [Pseudomonas viridiflava UASWS0038]
gi|409760069|gb|EKN45235.1| rhomboid family protein [Pseudomonas viridiflava UASWS0038]
Length = 188
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 58 KNAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGY 117
++++ VGA+G +FGL+ + L+ +W +R ++ +L+ A A AG SG G
Sbjct: 102 RSSIHVGASGLIFGLW--TYLLARAWYQRSLVSLLL--------AMIALAGYSGLIYGFV 151
Query: 118 SVQSINHIAILSGALFGVFLNKALNLREKRDKT 150
+ I+ + L+GAL GV + + ++ + + +T
Sbjct: 152 PMPGISFESHLAGALAGVVVARLMHSKTLQSET 184
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHN-----FPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R + S++LH+ F W +V +E+ G + Y SG + + +++
Sbjct: 125 RLVTSMFLHYGAMHLLFNMWALYVVG---PPLEKWLGLTRFGVLYALSGLGGSVLVYMLS 181
Query: 57 PKNAVSVGAAGAVFGLF-AISVLVK-MSWDRRKVLEVLILD 95
P N+ + GA+GA+FGLF AI V+ + ++ D R + +++++
Sbjct: 182 PLNSATAGASGAIFGLFGAIFVVARHLNLDVRAIGVIVVIN 222
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFWKLVEEEEGNCGL--WLS-YIFSGAAANFVPWLILPK 58
R + S++LH F W L + E G +L+ Y+ SG A + + +L+
Sbjct: 58 RLVTSMFLHQEVVH-IAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLLAEP 116
Query: 59 NAVSVGAAGAVFGLF-AISVLV-KMSWDRR 86
S+GA+GAV+GLF A +VL+ +M++D R
Sbjct: 117 GQGSLGASGAVYGLFGATAVLMRRMNYDMR 146
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 RSIKSLYLHHNFPPWYQFVTAAFW--KLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R + S++LH +F + + F K+VE G+ + Y +G NFV L
Sbjct: 204 RIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFNTT 262
Query: 60 AVSVGAAGAVFGL 72
+SVGA+GA+FGL
Sbjct: 263 TISVGASGAIFGL 275
>gi|189207869|ref|XP_001940268.1| rhomboid family membrane protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976361|gb|EDU42987.1| rhomboid family membrane protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 542
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 16 WYQFVTAAF---------------WKL---VEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
W++F+T F W L +E+E G L Y +G + P
Sbjct: 266 WWRFITPIFLHAGLIHIGFNMLLQWTLGRDMEKEIGPLRFLLVYFSAGIFGFVLGGNYAP 325
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSWDRR----KVLEVLILDELVVEKAAQAPAGTSGT 112
+ SVG +G++FG+ A+++L + +W R K L L+LD + P + +
Sbjct: 326 EGLTSVGCSGSLFGILALTMLDLLYNWSTRRSPVKDLLFLLLDMAIAFVIGLLPGLDNFS 385
Query: 113 FIGGYSVQSINHIAIL 128
IGG+ + + I I+
Sbjct: 386 HIGGFCMGLVLGICII 401
>gi|424945021|ref|ZP_18360777.1| peptidase, S54 family [Enterococcus faecium R496]
gi|402935879|gb|EJX55088.1| peptidase, S54 family [Enterococcus faecium R496]
Length = 199
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 7 LYLHHNFPP----------WYQFVTAAFWKLVEEEEGN-----CGLWLSYIFSGAAANFV 51
LY H FP Y ++ + +V EE N L + I SG + V
Sbjct: 51 LYEGHLFPNIFISIVSHINLYHLISNLLFLVVLEEALNDQYEWLTLLIVLIISGFLGSLV 110
Query: 52 PWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
P+L L N VS+G +G +FG A+ + + +D +K
Sbjct: 111 PFL-LHSNIVSMGLSGGIFGWIALFAIAYIHFDSKK 145
>gi|431783896|ref|ZP_19571979.1| hypothetical protein OMA_05880 [Enterococcus faecium E6012]
gi|431786896|ref|ZP_19574890.1| hypothetical protein OMC_05808 [Enterococcus faecium E6045]
gi|430644314|gb|ELB79959.1| hypothetical protein OMA_05880 [Enterococcus faecium E6012]
gi|430644840|gb|ELB80420.1| hypothetical protein OMC_05808 [Enterococcus faecium E6045]
Length = 199
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 7 LYLHHNFPP----------WYQFVTAAFWKLVEEEEGN-----CGLWLSYIFSGAAANFV 51
LY H FP Y ++ + +V EE N L + I SG + V
Sbjct: 51 LYEGHLFPNIFISIVSHINLYHLISNLLFLVVLEEALNDQYEWLTLLIVLIISGFLGSLV 110
Query: 52 PWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK-----VLEVLILDELVVEKAAQAP 106
P+L L N VS+G +G +FG A+ + + +D ++ V +LI+ L+V
Sbjct: 111 PFL-LQSNIVSMGLSGGIFGWIALFAIAYIHFDSKEHLLLSVFVLLIIGILLVSTFESGE 169
Query: 107 AGTSGTFIG 115
A IG
Sbjct: 170 ANVLSHVIG 178
>gi|314937564|ref|ZP_07844891.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|314941933|ref|ZP_07848795.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|314952223|ref|ZP_07855239.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|314991619|ref|ZP_07857093.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|314996113|ref|ZP_07861186.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|313589708|gb|EFR68553.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|313593796|gb|EFR72641.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|313595655|gb|EFR74500.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|313599277|gb|EFR78122.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|313643059|gb|EFS07639.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
Length = 199
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 7 LYLHHNFPP----------WYQFVTAAFWKLVEEEEGN-----CGLWLSYIFSGAAANFV 51
LY H FP Y ++ + +V EE N L + I SG + V
Sbjct: 51 LYEGHLFPNIFISIVSHINLYHLISNLLFLVVLEEALNDQYEWLTLLIVLIISGFLGSLV 110
Query: 52 PWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK 87
P+L L N VS+G +G +FG A+ + + +D +K
Sbjct: 111 PFL-LHSNIVSMGLSGGIFGWIALFAIAYIRFDSKK 145
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 2 RSIKSLYLHHNFPP--WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKN 59
R I ++H F + F F +E G Y+ SG AN L+ P
Sbjct: 60 RLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGLIANVATLLLEPLT 119
Query: 60 AVSVGAAGAVFGLFA--ISVLV----KMSWDRRKVLEVLILDELVV 99
VG++GA+FGLF I++++ +S +++ VL + L++
Sbjct: 120 YTHVGSSGAIFGLFGYYIAIIIFRKHMLSKQNSQIILVLCVVSLIM 165
>gi|228983495|ref|ZP_04143705.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776239|gb|EEM24595.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 190
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRR- 86
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHFSFIIIFFLSGILGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSS 136
Query: 87 --------KVLEVLILDELVVEKAAQAPAGTSGTFIGG 116
++ ++L +A + +G IGG
Sbjct: 137 NPRDIAIFSIMICILLLFTFFNPSANPISHLTGLIIGG 174
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 24 FWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAI 75
F +VE+ G+ SY F+G N + I + +SVGA+GA+FGL +
Sbjct: 81 FGLIVEDIYGSEKFLFSYFFTGVVGN-IATHIFYHDTISVGASGAIFGLIGV 131
>gi|384178164|ref|YP_005563926.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324324248|gb|ADY19508.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 190
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 28 VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRR- 86
+E++ G+ + + SG N +LI+P + GA+G +FGL + + S R
Sbjct: 77 IEKQLGHFSFIIIFFLSGILGNISSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSS 136
Query: 87 --------KVLEVLILDELVVEKAAQAPAGTSGTFIGG 116
++ ++L +A + +G IGG
Sbjct: 137 NPRDIAIFSIMICILLLFTFFNPSANPISHLTGLIIGG 174
>gi|424877473|ref|ZP_18301118.1| peptidase, S54 family [Enterococcus faecium R497]
gi|424990035|ref|ZP_18402268.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|425023358|ref|ZP_18433484.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|402934323|gb|EJX53684.1| peptidase, S54 family [Enterococcus faecium R497]
gi|402980544|gb|EJX96148.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|403010146|gb|EJY23540.1| peptidase, S54 family [Enterococcus faecium C1904]
Length = 199
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 21/129 (16%)
Query: 7 LYLHHNFPP----------WYQFVTAAFWKLVEEEEGN-----CGLWLSYIFSGAAANFV 51
LY H FP Y ++ + +V EE N L + I SG + V
Sbjct: 51 LYEGHLFPNIFISIVSHINLYHLISNLLFLVVLEEALNDQYEWLTLLIVLIISGLLGSLV 110
Query: 52 PWLILPKNAVSVGAAGAVFGLFAISVLVKMSWDRRK-----VLEVLILDELVVEKAAQAP 106
P+L L N VS+G +G +FG A+ + + +D ++ V +LI+ L+V
Sbjct: 111 PFL-LQSNIVSMGLSGGIFGWIALFAIAYIRFDSKEHLLLSVFTLLIIGILLVSTFESGE 169
Query: 107 AGTSGTFIG 115
IG
Sbjct: 170 TNVLSHVIG 178
>gi|167517132|ref|XP_001742907.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779531|gb|EDQ93145.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 39 LSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVKM 81
L Y+ SG N V L +P N+ VGA+GAV+GL A +++ M
Sbjct: 162 LIYLISGCGGNLVSALFVP-NSAQVGASGAVYGLVATALVDLM 203
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 2 RSIKSLYLH----HNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANF--VPWLI 55
R + S++LH H F Y V AA + VE G ++ Y SG + + W
Sbjct: 366 RLVSSMFLHGGIMHLFLNIYGLVIAALF--VEPVFGRIKYFILYFASGICGSLASIYWY- 422
Query: 56 LPKNAVSVGAAGAVFGLFA--ISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTF 113
+N +SVGA+GA+FGL+ + +L+ ++ + + +L+ V G +G
Sbjct: 423 --ENTISVGASGAIFGLYGAVLGLLLTNAFPKDGKIGILMFIGPYV--GVNLLVGLTG-- 476
Query: 114 IGGYSVQSINHI-AILSGALFGVFL 137
+ + HI ++SGA+FG+ L
Sbjct: 477 ----GIDNAAHIGGLVSGAVFGIIL 497
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 41 YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
Y S + + +LI P N + GA+GAVFGLF + +V ++ D R V+ +++++
Sbjct: 82 YAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVIN 138
>gi|226326970|ref|ZP_03802488.1| hypothetical protein PROPEN_00830 [Proteus penneri ATCC 35198]
gi|225204807|gb|EEG87161.1| peptidase, S54 family [Proteus penneri ATCC 35198]
Length = 147
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 11 HNFPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVF 70
H F F+ +F + + LS IF + + W I ++A+ VGA+G +F
Sbjct: 15 HLFSNLLPFLILSFLSMTQSLREYV---LSSIFIIIVSGLLVW-IFGRSAIHVGASGWIF 70
Query: 71 GLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIA-ILS 129
GL+ S+L+ ++ RRK+++++I ++ + A G G V + +HIA +++
Sbjct: 71 GLW--SLLIAHAFTRRKIIDIVIALFVLFYYGSMA----YGLIPGQLGVSTESHIAGVVA 124
Query: 130 GALF 133
G L+
Sbjct: 125 GLLY 128
>gi|218778231|ref|YP_002429549.1| filamentous hemagglutinin family outer membrane protein
[Desulfatibacillum alkenivorans AK-01]
gi|218759615|gb|ACL02081.1| filamentous hemagglutinin family outer membrane protein
[Desulfatibacillum alkenivorans AK-01]
Length = 15349
Score = 35.4 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 59 NAVSVGAAGAVFGLFAISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYS 118
+ VSVGA G+V G A LV++ D+ V++ ++ + AAQ GT G+ IGG
Sbjct: 3613 SGVSVGAPGSVLGTGATGALVEVHTDKNVVVDGVVTAD-SASGAAQLAIGTFGSAIGGSV 3671
Query: 119 V 119
V
Sbjct: 3672 V 3672
>gi|344940121|ref|ZP_08779409.1| Rhomboid family protein [Methylobacter tundripaludum SV96]
gi|344261313|gb|EGW21584.1| Rhomboid family protein [Methylobacter tundripaludum SV96]
Length = 229
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 4 IKSLYLHHNFPP-----WYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPK 58
+ SL+LH N+P W+ ++ F VE+ G + Y+ G A F+ WL P
Sbjct: 69 LTSLFLHGNWPHLIMNMWFLWI---FGDNVEDRMGRLPFLVFYLACGLLATFLQWLFDPN 125
Query: 59 NAVS-VGAAGAVFGLFA 74
A+ VGA+GA+ G+ A
Sbjct: 126 LAIPVVGASGAIAGVLA 142
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 2 RSIKSLYLHHN-----FPPWYQFVTAAFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLIL 56
R I +++LH + F W V A +E G + Y +G + +L
Sbjct: 125 RLITAMFLHASVLHIVFNMWALLVVGA---PLEALLGRLRFLVLYFLAGLGGSTAVYLFA 181
Query: 57 PKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
P+ + ++GA+GA+FGLFA + ++++D R + V++++
Sbjct: 182 PRGSATLGASGAIFGLFAALFVFGRRLNFDIRPIGLVIVIN 222
>gi|380488088|emb|CCF37613.1| rhomboid family protein [Colletotrichum higginsianum]
Length = 572
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 23/125 (18%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
W++F+T F K +E G+ +L Y+ +G N +
Sbjct: 334 WFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEIAIGSIRFFLVYVSAGIFGNVMGANYAG 393
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSW-DRR---KVLEVLILDELVVEKAAQAPAGTSGT 112
A S GA+GA+FG+ A+++L + SW DRR K L ++LD ++ P +
Sbjct: 394 VMAASTGASGALFGVIALTLLDLLYSWKDRRSPVKDLMFILLDIVISFVLGLLPGLDNFA 453
Query: 113 FIGGY 117
IGG+
Sbjct: 454 HIGGF 458
>gi|138893878|ref|YP_001124331.1| hypothetical protein GTNG_0202 [Geobacillus thermodenitrificans
NG80-2]
gi|134265391|gb|ABO65586.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 205
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 2 RSIKSLYLHHNFPPWYQFVTA------AFWKLVEEEEGNCGLWLSYIFSGAAANFVPWLI 55
R I L LH++F + A F +E G L YI G AN L+
Sbjct: 60 RLISPLVLHYDF----NHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLL 115
Query: 56 LPKNAVSVGAAGAVFGLFAI 75
LP VGA+GA+F LF +
Sbjct: 116 LPPMYTHVGASGAIFALFGM 135
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 55 ILPKNAVSVGAAGAVFGLFAISVLV--KMSWDRRKVLEVLILD 95
+L NA++ GA+GAVFGLF + +V K++ D R VL ++ L+
Sbjct: 172 LLTFNALTAGASGAVFGLFGATFVVGRKLNMDVRSVLAIIGLN 214
>gi|452910770|ref|ZP_21959448.1| rhomboid family serine protease [Kocuria palustris PEL]
gi|452834191|gb|EME36994.1| rhomboid family serine protease [Kocuria palustris PEL]
Length = 268
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 24 FWKLVEEEEGNCGLWLSYIFS---GAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLVK 80
F +++E E G Y+ S GAAA L+ P +VGA+GAVFGLF +VL
Sbjct: 150 FGRMLEPEIGRGRFLTVYLLSLLGGAAAVL---LLSPAYTFTVGASGAVFGLFG-AVLAL 205
Query: 81 MSWDRRKVLEVL 92
W R+ E L
Sbjct: 206 ALWGGRRYRENL 217
>gi|310792586|gb|EFQ28113.1| rhomboid family protein [Glomerella graminicola M1.001]
Length = 561
Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 23/125 (18%)
Query: 16 WYQFVTAAFW------------------KLVEEEEGNCGLWLSYIFSGAAANFVPWLILP 57
W++F+T F K +E G+ +L Y+ +G N +
Sbjct: 323 WFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEVAIGSIRFFLVYLSAGIFGNVMGANYAG 382
Query: 58 KNAVSVGAAGAVFGLFAISVL-VKMSW-DRR---KVLEVLILDELVVEKAAQAPAGTSGT 112
A S GA+GA+FG+ A+++L + SW DRR K L ++LD ++ P +
Sbjct: 383 VMAASTGASGALFGVIALTLLDLLYSWKDRRSPVKDLMFIMLDVVISFVLGLLPGLDNFA 442
Query: 113 FIGGY 117
IGG+
Sbjct: 443 HIGGF 447
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,281,671,996
Number of Sequences: 23463169
Number of extensions: 82628145
Number of successful extensions: 220496
Number of sequences better than 100.0: 523
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 220225
Number of HSP's gapped (non-prelim): 533
length of query: 151
length of database: 8,064,228,071
effective HSP length: 114
effective length of query: 37
effective length of database: 9,684,394,101
effective search space: 358322581737
effective search space used: 358322581737
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)