BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039391
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
 pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
          Length = 967

 Score = 27.3 bits (59), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 5   KSLYLHHNFPPWYQFVTAAFWKLVEE 30
           +  Y    FPP+ +F+   FWKL E+
Sbjct: 148 REFYTTSLFPPFSKFIEWQFWKLKEK 173


>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
           Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
           Domain Orientation
          Length = 810

 Score = 27.3 bits (59), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 5   KSLYLHHNFPPWYQFVTAAFWKLVEE 30
           +  Y    FPP+ +F+   FWKL E+
Sbjct: 148 REFYTTSLFPPFSKFIEWQFWKLKEK 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,668,050
Number of Sequences: 62578
Number of extensions: 107952
Number of successful extensions: 206
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)