BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039391
         (151 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
           GN=ydcA PE=3 SV=1
          Length = 199

 Score = 33.1 bits (74), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 28  VEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFAISVLV 79
           +E   G     L Y  SG   N   ++  P + V VGA+GA+FGLF + + +
Sbjct: 88  LERMLGKARFLLVYAGSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFM 139


>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
           SV=1
          Length = 826

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 41  YIFSGAAANFVPWLILPKNAVSVGAAGAVFGLFA-ISVLVKMSW 83
           YI SG   N    L LP  A  VG AG+ FGL A + V +  SW
Sbjct: 667 YILSGITGNLASALFLPYRA-EVGPAGSQFGLLACLFVELFQSW 709


>sp|P0CM56|CAS1_CRYNJ Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=CAS1 PE=3 SV=1
          Length = 960

 Score = 30.4 bits (67), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 35  CGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGA 68
           C +WLSY  SGA      WL+  K A+ + A  A
Sbjct: 796 CFIWLSYRVSGATGEITEWLVGKKKALPLPATSA 829


>sp|P0CM57|CAS1_CRYNB Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=CAS1 PE=3 SV=1
          Length = 960

 Score = 30.4 bits (67), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 35  CGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGA 68
           C +WLSY  SGA      WL+  K A+ + A  A
Sbjct: 796 CFIWLSYRVSGATGEITEWLVGKKKALPLPATSA 829


>sp|Q8X226|CAS1_CRYNH Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var.
           grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
           / FGSC 9487) GN=CAS1 PE=3 SV=1
          Length = 959

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 35  CGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGA 68
           C +WLSY  SGA      WL+  K A+ + A  A
Sbjct: 795 CFIWLSYRVSGATGEITEWLVGKKKALPLPATSA 828


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,452,785
Number of Sequences: 539616
Number of extensions: 1849565
Number of successful extensions: 4695
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4691
Number of HSP's gapped (non-prelim): 21
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)