Query 039391
Match_columns 151
No_of_seqs 191 out of 1127
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 2.4E-22 8.2E-27 148.2 14.5 122 12-144 41-181 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 3.7E-23 1.3E-27 154.4 7.4 126 12-147 46-189 (196)
3 2l2t_A Receptor tyrosine-prote 64.8 8.7 0.0003 21.1 3.3 12 139-150 32-43 (44)
4 2ks1_B Epidermal growth factor 56.1 8.7 0.0003 21.1 2.3 13 138-150 32-44 (44)
5 2jwa_A Receptor tyrosine-prote 46.5 11 0.00039 20.6 1.8 18 132-149 26-43 (44)
6 2kxa_A Haemagglutinin HA2 chai 20.8 55 0.0019 16.1 1.6 11 128-138 2-12 (30)
7 2b2h_A AMT-1, ammonium transpo 17.7 85 0.0029 25.2 2.9 25 124-148 154-178 (399)
8 1u7g_A Probable ammonium trans 17.1 84 0.0029 25.1 2.8 25 123-147 164-188 (385)
9 2wjn_L Reaction center protein 13.1 1.2E+02 0.004 23.1 2.4 47 11-57 81-137 (274)
10 2rdd_B UPF0092 membrane protei 12.6 56 0.0019 16.8 0.4 11 136-146 16-26 (37)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.89 E-value=2.4e-22 Score=148.25 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=86.9
Q ss_pred cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391 12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF 73 (151)
Q Consensus 12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~ 73 (151)
+++||||++|++| |+.+|+.+|++||+.+|+.+++.+++.++++.|+ .++||||+++|++
T Consensus 41 ~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~--~~vGaSGai~gl~ 118 (181)
T 2xov_A 41 LKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALM 118 (181)
T ss_dssp GTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC--CceeHHHHHHHHH
Confidence 5589999999999 9999999999999999999999999999888764 3899999999999
Q ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhcc
Q 039391 74 AISVLVK-MSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLR 144 (151)
Q Consensus 74 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~ 144 (151)
++.+... ..++.+...+.. ...+.... ...+ +. ....+++|++||++|+++|++++..++|+
T Consensus 119 g~~~~~~~~~p~~~~~l~~~-~~~~~~~~------~~~~-~~-~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 181 (181)
T 2xov_A 119 GYVWLRGERDPQSGIYLQRG-LIIFALIW------IVAG-WF-DLFGMSMANGAHIAGLAVGLAMAFVDSLN 181 (181)
T ss_dssp HHHHHHHHHCGGGSCCCCHH-HHHHHHHH------HHHH-HT-TSSCCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCcCceeeeHHH-HHHHHHHH------HHHH-HH-HhccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 9865321 122211000000 00011100 1111 11 11247999999999999999999988764
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.88 E-value=3.7e-23 Score=154.40 Aligned_cols=126 Identities=13% Similarity=0.199 Sum_probs=87.3
Q ss_pred cCCCcchhhhhHh------------------HHHHHHhhchHHHHHHHHHHHHHHHHHHHhhcCCCcceechhHHHHHHH
Q 039391 12 NFPPWYQFVTAAF------------------WKLVEEEEGNCGLWLSYIFSGAAANFVPWLILPKNAVSVGAAGAVFGLF 73 (151)
Q Consensus 12 ~~~e~wrl~T~~f------------------G~~le~~~G~~~~~~lyl~sgi~g~l~~~~~~~~~~~~vGaSGai~Gl~ 73 (151)
+++||||++|++| |+.+|+.+|++||+.+|+.+++.+++.++++.|+. ++||||++||++
T Consensus 46 ~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~--~vGaSGai~gl~ 123 (196)
T 2nr9_A 46 QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAVL 123 (196)
T ss_dssp GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC--eeeHHHHHHHHH
Confidence 4589999999999 99999999999999999999999999998887643 899999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhHHHHHHHHHHHHHHHHHhhccccc
Q 039391 74 AISVLVKMSWDRRKVLEVLILDELVVEKAAQAPAGTSGTFIGGYSVQSINHIAILSGALFGVFLNKALNLREKR 147 (151)
Q Consensus 74 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~l~~~~~~ 147 (151)
++.+..... .+.... .... ...... .....+. ......+++|++||++|+++|++++..+.+++|+
T Consensus 124 g~~~~~~~~--~~~~~~-~~~~-~~~~~~---~~~~~~~-~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~~ 189 (196)
T 2nr9_A 124 GYVFIRDKL--NHHLFD-LPEG-FFTMLL---VGIALGF-ISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKN 189 (196)
T ss_dssp HHHHHHHHS--STTSCC-CCCS-STTTTT---TTTTHHH-HSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cchhhc-chHH-HHHHHH---HHHHHHH-HHhccCCCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 986532111 111000 0000 000000 0011111 1111345899999999999999999987665544
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=64.78 E-value=8.7 Score=21.07 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=6.0
Q ss_pred HHhhcccccccC
Q 039391 139 KALNLREKRDKT 150 (151)
Q Consensus 139 ~~l~~~~~~~~~ 150 (151)
++++++++++|+
T Consensus 32 ~~~RRRr~~~kr 43 (44)
T 2l2t_A 32 VYVRRKSIKKKR 43 (44)
T ss_dssp HHHHTTCSSCCC
T ss_pred HHhhhhhhhhcc
Confidence 344555555543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.07 E-value=8.7 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=7.3
Q ss_pred HHHhhcccccccC
Q 039391 138 NKALNLREKRDKT 150 (151)
Q Consensus 138 ~~~l~~~~~~~~~ 150 (151)
.++++++++++|+
T Consensus 32 ~~~~RRr~~~~kR 44 (44)
T 2ks1_B 32 GLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHTTTCCSCC
T ss_pred HHHhhhhHhhccC
Confidence 3455666666654
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=46.49 E-value=11 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhccccccc
Q 039391 132 LFGVFLNKALNLREKRDK 149 (151)
Q Consensus 132 l~G~l~~~~l~~~~~~~~ 149 (151)
+.|+..++.++|++.++|
T Consensus 26 i~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHhheehhhhhcc
Confidence 344444555666655544
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=20.77 E-value=55 Score=16.09 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 039391 128 LSGALFGVFLN 138 (151)
Q Consensus 128 lgG~l~G~l~~ 138 (151)
+.|+|+|++-+
T Consensus 2 lFGAIAGfieg 12 (30)
T 2kxa_A 2 LFGAIAGFIEG 12 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhc
Confidence 34555555543
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=17.73 E-value=85 Score=25.19 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 039391 124 HIAILSGALFGVFLNKALNLREKRD 148 (151)
Q Consensus 124 ~~aHlgG~l~G~l~~~~l~~~~~~~ 148 (151)
..-|+.|..+|+..++.+.||+.+.
T Consensus 154 ~vVH~~gG~~aL~~a~~LG~R~g~~ 178 (399)
T 2b2h_A 154 MVVHISSGFAALAVAMTIGKRAGFE 178 (399)
T ss_dssp TTTHHHHHHHHHHHHHHHCCCTTTT
T ss_pred eEEEechhHHHHHHHHHcCCCCCCC
Confidence 4459999999999999998876543
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=17.08 E-value=84 Score=25.07 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccc
Q 039391 123 NHIAILSGALFGVFLNKALNLREKR 147 (151)
Q Consensus 123 ~~~aHlgG~l~G~l~~~~l~~~~~~ 147 (151)
+..-|+.|..+|+..++.+.||+.+
T Consensus 164 s~vVH~~gG~aaL~~a~~LG~R~g~ 188 (385)
T 1u7g_A 164 GTVVHINAAIAGLVGAYLIGKRVGF 188 (385)
T ss_dssp TTTTHHHHHHHHHHHHHHSCCCCCT
T ss_pred CeEEEecchHHHHHHHHHhcCCCCC
Confidence 4556999999999999999887654
No 9
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=13.09 E-value=1.2e+02 Score=23.12 Aligned_cols=47 Identities=15% Similarity=-0.081 Sum_probs=31.8
Q ss_pred ccCCCcchhhhhHh--------HHHHH--HhhchHHHHHHHHHHHHHHHHHHHhhcC
Q 039391 11 HNFPPWYQFVTAAF--------WKLVE--EEEGNCGLWLSYIFSGAAANFVPWLILP 57 (151)
Q Consensus 11 ~~~~e~wrl~T~~f--------G~~le--~~~G~~~~~~lyl~sgi~g~l~~~~~~~ 57 (151)
.++|-||++++-.+ ++..| +..|.+....+=+.+.+...+...++.|
T Consensus 81 l~~GG~w~~~~~~~~~~~~~w~~R~~e~ar~LGmg~hia~AFsaaI~~~~~l~lirP 137 (274)
T 2wjn_L 81 LLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRP 137 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhh
Confidence 46789999999887 66666 4567666666666666666555544443
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=12.64 E-value=56 Score=16.76 Aligned_cols=11 Identities=27% Similarity=0.307 Sum_probs=4.5
Q ss_pred HHHHHhhcccc
Q 039391 136 FLNKALNLREK 146 (151)
Q Consensus 136 l~~~~l~~~~~ 146 (151)
.+-+.+++.+|
T Consensus 16 fYFl~iRPQ~K 26 (37)
T 2rdd_B 16 FYFMILRPQQK 26 (37)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHhhhHHH
Confidence 33344444433
Done!