BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039394
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 4 LDLSDNQLSEEIPHCSRYWQSLKVLKS--NHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
L LS N LS IP L+ LK N + G +P L YV+ ++ L + ++ + G+I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 62 IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
L N I++ N + GE IP I +L L L LS N G IP
Sbjct: 480 ----PSGLSNCTNLNWISLSNNRLTGE-----IPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 35/122 (28%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNH--INGCVPIRLCYVRPVQVLDISYSSIL 58
M +LD+S N LS IP L +L H I+G +P + +R + +LD+S + +
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 59 GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
G IP + LTML +DLS N G I
Sbjct: 691 GR---------------------------------IPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 119 PE 120
PE
Sbjct: 718 PE 719
Score = 29.6 bits (65), Expect = 0.72, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
+ ++ LS+N+L+ EIP ++L +LK +N +G +P L R + LD++ +
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 59 GDI 61
G I
Sbjct: 549 GTI 551
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 4 LDLSDNQLSEEIPHCSRYWQSLKVLKS--NHINGCVPIRLCYVRPVQVLDISYSSILGDI 61
L LS N LS IP L+ LK N + G +P L YV+ ++ L + ++ + G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 62 IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119
L N I++ N + GE IP I +L L L LS N G IP
Sbjct: 483 ----PSGLSNCTNLNWISLSNNRLTGE-----IPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 35/122 (28%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNH--INGCVPIRLCYVRPVQVLDISYSSIL 58
M +LD+S N LS IP L +L H I+G +P + +R + +LD+S + +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 59 GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI 118
G IP + LTML +DLS N G I
Sbjct: 694 GR---------------------------------IPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 119 PE 120
PE
Sbjct: 721 PE 722
Score = 29.6 bits (65), Expect = 0.73, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLK--SNHINGCVPIRLCYVRPVQVLDISYSSIL 58
+ ++ LS+N+L+ EIP ++L +LK +N +G +P L R + LD++ +
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 59 GDI 61
G I
Sbjct: 552 GTI 554
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 1 MEYLDLSDNQLSEEI---PHCSRYWQSLK--VLKSNHI 33
+EYLDLS+N + EE C W SL+ +L+ NH+
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHL 373
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 9 NQLSEEIPHC----SRYWQSLKVLKSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIV 64
N++S IP S+ + S+ + + N + G +P + + +D+S + + GD ++
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 65 SMIDLQMVQK----KNSIA----------------IINVVVVGELFKRPIPTKIDQLTML 104
D + QK KNS+A + N + G L P + QL L
Sbjct: 217 FGSD-KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-----PQGLTQLKFL 270
Query: 105 HALDLSRNQPIGKIPE 120
H+L++S N G+IP+
Sbjct: 271 HSLNVSFNNLCGEIPQ 286
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 1 MEYLDLSDNQLSEEI---PHCSRYWQSLK--VLKSNHI 33
+E+LDLS+N + EE C W SL+ VL NH+
Sbjct: 362 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 399
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 54 YSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112
Y S+L II VS +D+ + + N+ +VGE F + + L+A DL N
Sbjct: 166 YDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVN 224
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 1 MEYLDLSDNQLSEEI---PHCSRYWQSLK--VLKSNHI 33
+E+LDLS+N + EE C W SL+ VL NH+
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 75 KNSIAI---INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
KN I + I V+ ELF+ P P ID + ++L + QP G +P+
Sbjct: 323 KNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQP-GSLPQ 370
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 75 KNSIAI---INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
KN I + I V+ ELF+ P P ID + ++L + QP G +P+
Sbjct: 342 KNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQP-GSLPQ 389
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 75 KNSIAI---INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
KN I + I V+ ELF+ P P ID + ++L + QP G +P+
Sbjct: 323 KNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQP-GSLPQ 370
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 75 KNSIAI---INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120
KN I + I V+ ELF+ P P ID + ++L + QP G +P+
Sbjct: 323 KNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQP-GSLPQ 370
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 48 QVLDISYSSILGDIIIVSM--IDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLH 105
+V D + I G+ II ++ I + +K I ++N+V+ G+ F+ PT I TM
Sbjct: 804 EVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISS-TMNS 862
Query: 106 ALDLSRNQPIGKI 118
++ + +Q I +
Sbjct: 863 IIETASSQSIANL 875
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 48 QVLDISYSSILGDIIIVSM--IDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLH 105
+V D + I G+ II ++ I + +K I ++N+V+ G+ F+ PT I TM
Sbjct: 804 EVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISS-TMNS 862
Query: 106 ALDLSRNQPIGKI 118
++ + +Q I +
Sbjct: 863 IIETASSQSIANL 875
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 26.2 bits (56), Expect = 8.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCY--VRPVQVLDISYSSIL 58
+ +LDLS QL + P SL+VL +H N Y + +QVLD S + I+
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 26.2 bits (56), Expect = 9.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVLKSNHINGCVPIRLCY--VRPVQVLDISYSSIL 58
+ +LDLS QL + P SL+VL +H N Y + +QVLD S + I+
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,559,988
Number of Sequences: 62578
Number of extensions: 112069
Number of successful extensions: 212
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 39
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)