Query 039394
Match_columns 157
No_of_seqs 108 out of 2452
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 7.3E-19 1.6E-23 145.5 9.4 155 2-156 383-581 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.4E-18 2.9E-23 143.9 8.2 143 1-143 142-301 (968)
3 KOG4194 Membrane glycoprotein 99.6 5E-16 1.1E-20 118.9 1.4 140 1-140 175-331 (873)
4 KOG0617 Ras suppressor protein 99.6 1.5E-16 3.3E-21 105.4 -2.0 141 2-145 36-192 (264)
5 KOG0617 Ras suppressor protein 99.5 9E-16 1.9E-20 101.8 -2.9 103 19-139 29-140 (264)
6 KOG4194 Membrane glycoprotein 99.5 9.7E-15 2.1E-19 112.0 2.0 157 1-157 151-328 (873)
7 KOG0444 Cytoskeletal regulator 99.5 3.5E-15 7.5E-20 115.7 -0.9 155 1-157 105-279 (1255)
8 PLN03150 hypothetical protein; 99.4 1.7E-12 3.6E-17 103.3 7.3 104 3-139 422-528 (623)
9 KOG0472 Leucine-rich repeat pr 99.3 1.4E-13 3.1E-18 101.6 -0.0 135 2-139 391-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.3 2.2E-14 4.8E-19 105.8 -4.3 139 4-145 142-294 (565)
11 KOG0444 Cytoskeletal regulator 99.3 1.3E-13 2.7E-18 107.2 -2.1 138 14-154 213-370 (1255)
12 PLN03150 hypothetical protein; 99.3 1.2E-11 2.6E-16 98.5 6.4 83 47-145 420-509 (623)
13 PLN03210 Resistant to P. syrin 99.2 1.3E-10 2.8E-15 98.3 9.6 54 101-154 777-833 (1153)
14 KOG1259 Nischarin, modulator o 99.1 4E-12 8.6E-17 91.3 -1.1 120 1-141 286-414 (490)
15 PRK15387 E3 ubiquitin-protein 99.0 3.3E-10 7.1E-15 91.6 5.9 133 1-144 304-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.0 6.3E-10 1.4E-14 90.0 6.8 142 1-156 222-398 (754)
17 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.2E-16 94.4 -2.3 120 2-143 124-251 (722)
18 KOG0618 Serine/threonine phosp 99.0 2E-11 4.4E-16 97.9 -2.2 114 22-137 358-487 (1081)
19 PRK15370 E3 ubiquitin-protein 99.0 4.3E-10 9.3E-15 90.9 4.9 140 1-155 243-424 (754)
20 PF14580 LRR_9: Leucine-rich r 99.0 6.1E-10 1.3E-14 75.1 4.8 112 23-154 19-148 (175)
21 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.3E-16 95.2 -4.5 147 3-155 79-243 (722)
22 PF13855 LRR_8: Leucine rich r 99.0 6.9E-10 1.5E-14 62.1 3.4 44 95-138 18-61 (61)
23 KOG0618 Serine/threonine phosp 99.0 5E-11 1.1E-15 95.7 -1.9 152 1-156 312-486 (1081)
24 cd00116 LRR_RI Leucine-rich re 99.0 9E-11 1.9E-15 86.1 -0.5 14 45-58 137-150 (319)
25 PLN03210 Resistant to P. syrin 98.9 3E-09 6.5E-14 90.2 8.2 119 1-137 780-904 (1153)
26 KOG4237 Extracellular matrix p 98.9 4.8E-11 1E-15 88.1 -3.7 43 97-139 269-311 (498)
27 cd00116 LRR_RI Leucine-rich re 98.9 3.2E-10 7E-15 83.2 0.5 139 2-140 54-235 (319)
28 PRK15387 E3 ubiquitin-protein 98.9 9.9E-09 2.2E-13 83.2 8.4 141 2-155 204-371 (788)
29 PF13855 LRR_8: Leucine rich r 98.9 2.7E-09 5.8E-14 59.7 3.7 57 1-57 3-61 (61)
30 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.3E-13 76.8 3.4 49 95-145 248-296 (394)
31 PF14580 LRR_9: Leucine-rich r 98.5 1.4E-07 3.1E-12 63.7 4.2 95 41-155 15-122 (175)
32 COG4886 Leucine-rich repeat (L 98.5 1.3E-07 2.8E-12 71.7 3.3 152 2-156 119-287 (394)
33 KOG1259 Nischarin, modulator o 98.4 8E-08 1.7E-12 69.5 1.5 81 39-138 278-364 (490)
34 PF12799 LRR_4: Leucine Rich r 98.3 8.2E-07 1.8E-11 46.1 3.0 38 102-140 1-38 (44)
35 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.6E-13 81.0 -6.5 116 2-139 167-292 (1096)
36 KOG4237 Extracellular matrix p 98.2 8.5E-08 1.8E-12 71.4 -2.2 108 29-137 75-199 (498)
37 KOG1909 Ran GTPase-activating 98.2 8.4E-08 1.8E-12 70.1 -2.3 44 96-139 207-254 (382)
38 KOG4579 Leucine-rich repeat (L 98.0 2.2E-07 4.7E-12 60.0 -3.0 78 44-139 52-136 (177)
39 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.6E-11 67.0 -0.6 115 4-139 77-199 (414)
40 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.6E-10 41.7 3.2 23 93-115 15-37 (44)
41 KOG4658 Apoptotic ATPase [Sign 97.9 5.7E-06 1.2E-10 68.6 2.7 96 24-136 546-652 (889)
42 KOG3207 Beta-tubulin folding c 97.9 2.9E-06 6.2E-11 64.0 0.7 140 1-141 174-341 (505)
43 KOG3207 Beta-tubulin folding c 97.9 3.2E-06 7E-11 63.8 0.2 138 1-138 148-313 (505)
44 KOG4579 Leucine-rich repeat (L 97.9 1.9E-06 4.1E-11 55.7 -1.0 83 44-144 76-164 (177)
45 KOG4658 Apoptotic ATPase [Sign 97.8 8.1E-06 1.8E-10 67.7 1.8 100 18-134 566-676 (889)
46 KOG0531 Protein phosphatase 1, 97.6 5.5E-06 1.2E-10 63.5 -1.7 75 1-78 97-178 (414)
47 PRK15386 type III secretion pr 97.5 0.00038 8.3E-09 53.1 6.9 123 1-136 54-187 (426)
48 KOG1859 Leucine-rich repeat pr 97.5 1.4E-05 3.1E-10 64.1 -1.5 56 97-155 182-241 (1096)
49 KOG1909 Ran GTPase-activating 97.4 1.3E-05 2.7E-10 59.0 -1.8 62 95-156 178-251 (382)
50 KOG2982 Uncharacterized conser 97.4 9.7E-05 2.1E-09 53.8 2.5 57 98-154 220-287 (418)
51 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 59.8 1.5 124 1-140 124-264 (699)
52 KOG1644 U2-associated snRNP A' 97.0 0.002 4.4E-08 44.4 5.0 39 39-77 58-103 (233)
53 COG5238 RNA1 Ran GTPase-activa 96.7 0.00031 6.7E-09 50.6 -0.4 122 19-140 88-256 (388)
54 PF00560 LRR_1: Leucine Rich R 96.6 0.00088 1.9E-08 29.2 0.8 20 1-21 2-21 (22)
55 KOG2120 SCF ubiquitin ligase, 96.5 7.8E-05 1.7E-09 54.3 -4.9 137 1-137 187-349 (419)
56 PF00560 LRR_1: Leucine Rich R 96.4 0.0011 2.4E-08 28.9 0.3 19 104-123 2-20 (22)
57 KOG3665 ZYG-1-like serine/thre 96.3 0.0015 3.1E-08 53.4 0.8 94 44-155 147-259 (699)
58 PRK15386 type III secretion pr 96.3 0.019 4.1E-07 44.1 6.6 53 20-76 49-109 (426)
59 KOG2739 Leucine-rich acidic nu 96.2 0.005 1.1E-07 43.9 3.1 15 41-55 61-75 (260)
60 KOG1644 U2-associated snRNP A' 96.1 0.0095 2.1E-07 41.2 3.7 72 3-76 46-127 (233)
61 KOG2123 Uncharacterized conser 95.8 0.00051 1.1E-08 49.7 -3.4 45 98-143 59-105 (388)
62 COG5238 RNA1 Ran GTPase-activa 95.1 0.0091 2E-07 43.3 0.9 44 96-139 86-133 (388)
63 KOG2123 Uncharacterized conser 94.6 0.0039 8.5E-08 45.3 -2.0 77 41-132 37-123 (388)
64 KOG2739 Leucine-rich acidic nu 94.3 0.034 7.3E-07 39.8 2.2 88 37-140 35-130 (260)
65 PF13504 LRR_7: Leucine rich r 93.7 0.039 8.4E-07 22.2 1.0 12 1-12 3-14 (17)
66 KOG2982 Uncharacterized conser 93.5 0.026 5.7E-07 41.5 0.5 80 44-139 70-159 (418)
67 KOG2120 SCF ubiquitin ligase, 91.6 0.027 5.8E-07 41.5 -1.5 133 1-135 212-372 (419)
68 smart00369 LRR_TYP Leucine-ric 91.2 0.24 5.3E-06 22.0 2.1 18 102-120 2-19 (26)
69 smart00370 LRR Leucine-rich re 91.2 0.24 5.3E-06 22.0 2.1 18 102-120 2-19 (26)
70 PF13516 LRR_6: Leucine Rich r 91.0 0.034 7.4E-07 24.4 -0.9 13 103-115 3-15 (24)
71 PF13306 LRR_5: Leucine rich r 90.6 0.8 1.7E-05 28.7 4.8 38 18-55 7-45 (129)
72 PF13306 LRR_5: Leucine rich r 90.4 1.3 2.7E-05 27.8 5.6 52 2-54 15-67 (129)
73 smart00365 LRR_SD22 Leucine-ri 87.3 0.55 1.2E-05 21.2 1.6 15 44-58 1-15 (26)
74 smart00364 LRR_BAC Leucine-ric 84.7 0.75 1.6E-05 20.8 1.4 17 103-120 3-19 (26)
75 smart00368 LRR_RI Leucine rich 83.7 0.91 2E-05 20.7 1.5 14 126-139 2-15 (28)
76 KOG0473 Leucine-rich repeat pr 81.2 0.064 1.4E-06 38.2 -4.3 81 40-138 37-123 (326)
77 KOG3763 mRNA export factor TAP 66.6 3.3 7.2E-05 33.2 1.3 13 127-139 271-283 (585)
78 KOG0473 Leucine-rich repeat pr 62.6 0.87 1.9E-05 32.7 -2.2 54 3-58 69-124 (326)
79 smart00367 LRR_CC Leucine-rich 46.5 15 0.00033 16.0 1.2 13 125-137 1-13 (26)
80 KOG3864 Uncharacterized conser 26.0 18 0.00038 25.5 -0.5 34 102-135 151-185 (221)
81 KOG1947 Leucine rich repeat pr 24.3 46 0.00099 25.7 1.4 14 41-54 210-223 (482)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=7.3e-19 Score=145.52 Aligned_cols=155 Identities=28% Similarity=0.415 Sum_probs=95.3
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCC------------------------CCCCEEEccCC
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYV------------------------RPVQVLDISYS 55 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l------------------------~~L~~L~l~~n 55 (157)
+.+++++|.+.+.+|..+..+++|+.| .+|.+.+..|..+..+ ++|++|++++|
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 445555555555555555555555555 4444444444444444 44455555555
Q ss_pred cceeecc------eeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChh
Q 039394 56 SILGDII------IVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG 121 (157)
Q Consensus 56 ~~~~~~~------~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 121 (157)
.+.+.+| +++.|++++|.+.+.. .+..+..+..+ +.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus 463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 4444433 4566666666665443 33333334333 55667777777888888888888888788888
Q ss_pred hhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 122 ISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 122 ~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
+..+++|+.|++++|.++|.+|.. +.++.++++.+
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 888888888888888888777765 55667776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=1.4e-18 Score=143.92 Aligned_cols=143 Identities=36% Similarity=0.484 Sum_probs=71.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
|++|++++|.+.+.+|..+..+++|++| .+|.+.+..|..++.+++|++|++++|.+.+.+| +++.|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 3455555555555555555556666665 4555555555555556666666666555544333 455555555
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.+.. .+..+..++++ +.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 5554322 23333333333 333444444444445555555444444444444444444444444444444444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=5e-16 Score=118.95 Aligned_cols=140 Identities=21% Similarity=0.135 Sum_probs=96.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~ 71 (157)
+++|+|+.|+++..-..+|..+.+|.+| +.|+++...+..|+++++|+.|++.+|+|.- .+|+++.+.+..
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 4678888888886666778888888888 8888887777788889999999999998752 345777777777
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
|.+.... .|-.+..++++ +...-..++..++.|+.|++++|.+...-++.+.-+++|++|++++|.|..
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 7777654 44444444444 333334455566666666666666666556666666666666666666653
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-16 Score=105.40 Aligned_cols=141 Identities=23% Similarity=0.384 Sum_probs=110.6
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce------eecceeeeeeccccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQ 73 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~ 73 (157)
+.|.||+|.++ .+|+.++.+.+|+.| .+|.++ .+|..++++++|++|+++.|++. |.+|.++.+|++.|.
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 34678888888 677788888888888 566666 67888888888888888888764 566788888888887
Q ss_pred ccceE---EEceeeeecccc-----ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394 74 KKNSI---AIINVVVVGELF-----KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 74 l~~~~---~~~~~~~l~~~~-----~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
+..-. .+..+..++.+. -..+|..++++++|+.|.+++|.+. .+|.+++.+..|++|++.+|.++...|+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 76533 555555555441 1267889999999999999999987 89999999999999999999998655544
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=9e-16 Score=101.77 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=73.1
Q ss_pred hhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeecccc
Q 039394 19 SRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELF 90 (157)
Q Consensus 19 ~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~ 90 (157)
+..+.+++.| +-|.++ .+|+.+..+.+|+.|++.+|+++. .+|.++.++++.|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---------------
Confidence 4556677777 677777 678889999999999999999873 3448888999999998
Q ss_pred ccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcce
Q 039394 91 KRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.+|..|+.++.|+.||+.+|++.. .+|..|..+..|+.|++++|.+.
T Consensus 93 --~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 93 --ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred --cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 566666666666666666666543 34555555555555555555554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.48 E-value=9.7e-15 Score=112.04 Aligned_cols=157 Identities=22% Similarity=0.139 Sum_probs=113.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~ 71 (157)
|+.||||.|.++...-++|..-++++.| +.|+++..--+.|..+.+|..|.+++|+++. .+|.|+.|++..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 3556677776663333455555667777 6666665555667777777777777777652 234677777877
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|++.-.. .|..+.+++.+ +..---..|..+..+++|++..|+++..-..++.+++.|++|++|+|.|...-+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 7776543 66666666666 222223457889999999999999987778889999999999999999998777
Q ss_pred CC----CCcccccCCCCC
Q 039394 144 SG----TKLQTLDASSYM 157 (157)
Q Consensus 144 ~~----~~l~~l~~~~~~ 157 (157)
+. ++++.||+++++
T Consensus 311 d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNR 328 (873)
T ss_pred chhhhcccceeEeccccc
Confidence 76 999999998863
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=3.5e-15 Score=115.66 Aligned_cols=155 Identities=27% Similarity=0.290 Sum_probs=119.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeecccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMV 72 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n 72 (157)
|+.||||+|++. +.|..+..-+++-+| +.|++...+-+-+-+++-|-+||+|.|++....| .+++|.+++|
T Consensus 105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 567899999998 888888888888888 7777775544556678888899999998874333 7888899999
Q ss_pred cccceE--EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 73 QKKNSI--AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 73 ~l~~~~--~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
++...- .+..++.+..+ ....+|.++..+.+|..+|+++|.+. .+|+++..+++|+.|++|+|.|+..-.
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec
Confidence 887543 44455555544 23378999999999999999999977 899999999999999999999875444
Q ss_pred CC---CCcccccCCCCC
Q 039394 144 SG---TKLQTLDASSYM 157 (157)
Q Consensus 144 ~~---~~l~~l~~~~~~ 157 (157)
.. ..+.+|+++-+|
T Consensus 263 ~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQ 279 (1255)
T ss_pred cHHHHhhhhhhccccch
Confidence 33 666677766553
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.7e-12 Score=103.35 Aligned_cols=104 Identities=29% Similarity=0.428 Sum_probs=64.4
Q ss_pred EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEEE
Q 039394 3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAI 80 (157)
Q Consensus 3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~~ 80 (157)
.|+|++|.+.+.+|..+..+++|+.| ..|.+.+.+|..++.+++|+.|++++|.+.+
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--------------------- 480 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--------------------- 480 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC---------------------
Confidence 34555555555555555555555555 4455555555555555555555555555443
Q ss_pred ceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcC-CCCCeEEccCCcce
Q 039394 81 INVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL-GLLGVLSLSNNKLS 139 (157)
Q Consensus 81 ~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~ 139 (157)
.+|..++.+++|+.|++++|.+.+.+|..+... .++..+++++|...
T Consensus 481 ------------~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 481 ------------SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ------------CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 567777888888888888888888888777653 35567777777643
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=1.4e-13 Score=101.62 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=106.2
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n 72 (157)
+.++++.|++. ++|..+..++.+.+. ..|...+.+|..++.++++..|++++|-+. .+| .++.+++++|
T Consensus 391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence 35789999999 889888877777766 555555588899999999999999998775 344 7889999999
Q ss_pred cccceEEEceeee-eccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 73 QKKNSIAIINVVV-VGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 73 ~l~~~~~~~~~~~-l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+|...+++..... ++.+ +....|..+..+.+|..||+..|.+. .+|+.+++|+++++|++.+|+|.
T Consensus 469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 469 RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9987662221111 1111 33344556899999999999999977 89999999999999999999998
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=2.2e-14 Score=105.84 Aligned_cols=139 Identities=24% Similarity=0.246 Sum_probs=97.6
Q ss_pred EECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeeccccccc
Q 039394 4 LDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQKK 75 (157)
Q Consensus 4 L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~l~ 75 (157)
++..+|+++ ..|+.+..+.++..+ .+|.+.. .|+..-.|++|+++|+..|.+...-| ++..+++..|++.
T Consensus 142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence 344444444 344444444444444 4444443 33333347777777777776652222 6777888999998
Q ss_pred ceEEEceeeeeccc-----cccccccccc-cccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394 76 NSIAIINVVVVGEL-----FKRPIPTKID-QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 76 ~~~~~~~~~~l~~~-----~~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
..++|..|..+.++ ....+|.+.. ++.++..||+++|++. ++|+++..+++|..||+|+|.+++-.++-
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence 88888888888877 3336777765 8899999999999976 99999999999999999999999765544
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.30 E-value=1.3e-13 Score=107.19 Aligned_cols=138 Identities=24% Similarity=0.307 Sum_probs=85.4
Q ss_pred ccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccccccceE-EEceee
Q 039394 14 EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSI-AIINVV 84 (157)
Q Consensus 14 ~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~-~~~~~~ 84 (157)
.+|.++..+.+|..+ +.|.+. .+|+++..+++|+-|++|+|+|+.. ...+++|+++.|.+...+ .+++++
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 356666666666666 556655 6788888888888888888887632 227788888888888777 666666
Q ss_pred eeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccC
Q 039394 85 VVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDA 153 (157)
Q Consensus 85 ~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~ 153 (157)
.++.+ --..+|..++++.+|+.+..++|++. -+|+.++.|..|+.|.++.|.+- .+|+. +.+++||+
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 65555 11245666666666665555555544 45555555555555555555543 23333 44444444
Q ss_pred C
Q 039394 154 S 154 (157)
Q Consensus 154 ~ 154 (157)
.
T Consensus 370 r 370 (1255)
T KOG0444|consen 370 R 370 (1255)
T ss_pred c
Confidence 3
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.2e-11 Score=98.51 Aligned_cols=83 Identities=34% Similarity=0.505 Sum_probs=69.0
Q ss_pred CCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC
Q 039394 47 VQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119 (157)
Q Consensus 47 L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 119 (157)
++.|++++|.+.|.+| +|+.|++++|.+.+ .+|..+..+++|+.|++++|++.+.+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----------------~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----------------NIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----------------cCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 4556666666665544 56666666666653 688899999999999999999999999
Q ss_pred hhhhcCCCCCeEEccCCcceecCCCC
Q 039394 120 EGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 120 ~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
+.++.+++|+.|++++|.++|.+|..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCChH
Confidence 99999999999999999999999986
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=1.3e-10 Score=98.33 Aligned_cols=54 Identities=30% Similarity=0.356 Sum_probs=32.9
Q ss_pred ccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCC
Q 039394 101 LTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDAS 154 (157)
Q Consensus 101 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~ 154 (157)
+++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|.. +.++.|+++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 346667777776666667777777777777777766444445543 444445444
No 14
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=4e-12 Score=91.30 Aligned_cols=120 Identities=28% Similarity=0.301 Sum_probs=96.8
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMV 72 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n 72 (157)
|+++|||+|.++ .+.+++.-.|.++.| +.|.+.. + +.+..+++|++||+|+|.++.. +.+.+.|.++.|
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 567899999998 888888888999999 7888773 3 3488999999999999987632 338889999999
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceec
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
.+.+ -..++++-+|..||+++|++..- --..++.++.|..+.+.+|++.+.
T Consensus 363 ~iE~------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 363 KIET------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhh------------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8863 34577888999999999998631 123478999999999999999754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.05 E-value=3.3e-10 Score=91.57 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=76.1
Q ss_pred CcEEECcCCccccccCcchhcc-----------------cccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYW-----------------QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI 61 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l-----------------~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 61 (157)
|++|++++|.+++ +|.....+ .+|+.| .+|.+.+ +|.. .++|+.|++++|.+.+ +
T Consensus 304 L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 304 LQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred cceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 5677777777774 33321111 244555 4555542 3332 2344455555555542 3
Q ss_pred c----eeeeeecccccccceE----EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEc
Q 039394 62 I----IVSMIDLQMVQKKNSI----AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSL 133 (157)
Q Consensus 62 ~----~l~~l~l~~n~l~~~~----~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 133 (157)
| +++.|++++|.+...+ .+..+....+.+. .+|.. ..+|+.|++++|++. .+|+.+..+++++.+++
T Consensus 378 P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 378 PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccccccceEEecCCcccCCCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 3 5556666666665443 1111111111122 34542 246778899999977 78999999999999999
Q ss_pred cCCcceecCCC
Q 039394 134 SNNKLSGKIPS 144 (157)
Q Consensus 134 s~N~l~~~~p~ 144 (157)
++|++++.+|.
T Consensus 453 s~N~Ls~~~~~ 463 (788)
T PRK15387 453 EGNPLSERTLQ 463 (788)
T ss_pred CCCCCCchHHH
Confidence 99999887554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=6.3e-10 Score=90.00 Aligned_cols=142 Identities=24% Similarity=0.342 Sum_probs=71.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~ 73 (157)
|++|++++|.++ .+|..+. .+|+.| ..|.+. .+|..+. ++|+.|++++|.+.. +| +|+.|++++|.
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~ 294 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNS 294 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccCCCCcEEECCCCc
Confidence 467777777777 4555443 345555 455554 4444432 356666666665542 22 45566666665
Q ss_pred ccceE-EEc----ee---------------eeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCC
Q 039394 74 KKNSI-AII----NV---------------VVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGL 127 (157)
Q Consensus 74 l~~~~-~~~----~~---------------~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 127 (157)
+...+ .+. .+ ..++.+ +. .+|..+ .++|+.|++++|++. .+|..+. +.
T Consensus 295 Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~ 368 (754)
T PRK15370 295 IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETLP--PT 368 (754)
T ss_pred cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhhc--CC
Confidence 55433 110 00 011111 11 133222 246666666666655 4555442 46
Q ss_pred CCeEEccCCcceecCCCC--CCcccccCCCC
Q 039394 128 LGVLSLSNNKLSGKIPSG--TKLQTLDASSY 156 (157)
Q Consensus 128 L~~L~ls~N~l~~~~p~~--~~l~~l~~~~~ 156 (157)
|+.|++++|.+. .+|.. ..++.|+++.+
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N 398 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLPAALQIMQASRN 398 (754)
T ss_pred cCEEECCCCcCC-CCCHhHHHHHHHHhhccC
Confidence 667777777666 33433 34555555443
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.5e-11 Score=94.40 Aligned_cols=120 Identities=28% Similarity=0.369 Sum_probs=75.0
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeeccccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQ 73 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~ 73 (157)
++++|+.|+++ .+|..++.++ |+.| .+|.+. .+|+.++....|.++|.+.|.+....+ +++.+.+..|.
T Consensus 124 t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 124 TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence 34455555555 4444444444 4444 333333 445555555555555555555432111 44444555555
Q ss_pred ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 74 KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
+. .+|.++..+ .|..||+++|++. .+|-.|..|+.|++|-|.+|++..+..
T Consensus 201 l~-----------------~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 201 LE-----------------DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hh-----------------hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 54 578888744 5889999999976 899999999999999999999875433
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.01 E-value=2e-11 Score=97.93 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=63.9
Q ss_pred ccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc--------eeeeeecccccccceE-EEceeeeeccc-
Q 039394 22 WQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII--------IVSMIDLQMVQKKNSI-AIINVVVVGEL- 89 (157)
Q Consensus 22 l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~l~~n~l~~~~-~~~~~~~l~~~- 89 (157)
+..|+.| .+|+++...-+.+..+.+|++|++++|++. .+| .++.|++++|++...+ .+..+..++.+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 4445555 566666555455666666666666666654 233 5556666666666544 33333333333
Q ss_pred ----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCc
Q 039394 90 ----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK 137 (157)
Q Consensus 90 ----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 137 (157)
....+| ++..+++|+.+|++.|.+.-..-..-...++|++||+++|.
T Consensus 437 ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 111455 66777777777777777653222222223677777777775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.00 E-value=4.3e-10 Score=90.94 Aligned_cols=140 Identities=21% Similarity=0.322 Sum_probs=81.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------------------ 60 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------------------ 60 (157)
|+.|++++|.+. .+|..+. .+|+.| ..|.+. .+|+.+. ++|+.|++++|++++.
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L 316 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL 316 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence 456777777776 5555443 356666 555555 3455442 3566666666655421
Q ss_pred --c-----ceeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCC
Q 039394 61 --I-----IIVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG 126 (157)
Q Consensus 61 --~-----~~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 126 (157)
+ ++++.|++++|.+...+ .+. ..+..+ +. .+|..+ .+.|+.|++++|++. .+|..+..
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~-- 388 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPA-- 388 (754)
T ss_pred ccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHH--
Confidence 1 14455555555554433 111 122222 22 355544 368999999999988 67776653
Q ss_pred CCCeEEccCCcceecCCCC--------CCcccccCCC
Q 039394 127 LLGVLSLSNNKLSGKIPSG--------TKLQTLDASS 155 (157)
Q Consensus 127 ~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~~ 155 (157)
.|+.|++++|.+. .+|.. +.+..+++..
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 6899999999997 55543 3445565544
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=6.1e-10 Score=75.12 Aligned_cols=112 Identities=29% Similarity=0.325 Sum_probs=43.0
Q ss_pred cccccc--ccccceeecCccCc-CCCCCCEEEccCCccee-----ecceeeeeecccccccceEEEceeeeecccccccc
Q 039394 23 QSLKVL--KSNHINGCVPIRLC-YVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPI 94 (157)
Q Consensus 23 ~~L~~L--~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~ 94 (157)
..++.| .+|.+.. + +.++ .+.+|+.|++++|.++. .++.++.|++++|++. .+
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-----------------~i 79 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-----------------SI 79 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS--------------------S-
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-----------------cc
Confidence 345666 5666653 2 2344 46777778888877752 2237777778888776 34
Q ss_pred cccc-ccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCCCC--------CCcccccCC
Q 039394 95 PTKI-DQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIPSG--------TKLQTLDAS 154 (157)
Q Consensus 95 p~~~-~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~ 154 (157)
+..+ ..+++|++|++++|++...- -..+..+++|+.|++.+|+++.. +.. +.++.||..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 4444 35788999999999886421 24567788999999999988743 333 677777653
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.1e-11 Score=95.15 Aligned_cols=147 Identities=27% Similarity=0.384 Sum_probs=111.8
Q ss_pred EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc------eeeeeecccccc
Q 039394 3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVSMIDLQMVQK 74 (157)
Q Consensus 3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~~l~l~~n~l 74 (157)
+.|++.|++. ++|..+..+..|+.+ ..|.+. .+|..++.+..|.++|++.|+++ .+| .|+.+.+++|++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCcc
Confidence 4689999998 899999889999988 444444 78899999999999999999987 444 889999999999
Q ss_pred cceE-EEceeeeeccc-----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394 75 KNSI-AIINVVVVGEL-----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--- 145 (157)
Q Consensus 75 ~~~~-~~~~~~~l~~~-----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--- 145 (157)
...+ +++-...+..+ -...+|..++.+.+|+.|.++.|++. .+|+.+.++ .|..||++.|+++. +|..
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~-iPv~fr~ 232 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY-LPVDFRK 232 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-cchhhhh
Confidence 8766 55533333333 11246777788888888888888866 778887755 58899999999884 4544
Q ss_pred -CCcccccCCC
Q 039394 146 -TKLQTLDASS 155 (157)
Q Consensus 146 -~~l~~l~~~~ 155 (157)
+.|++|.+..
T Consensus 233 m~~Lq~l~Len 243 (722)
T KOG0532|consen 233 MRHLQVLQLEN 243 (722)
T ss_pred hhhheeeeecc
Confidence 6677766654
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=6.9e-10 Score=62.14 Aligned_cols=44 Identities=41% Similarity=0.519 Sum_probs=39.8
Q ss_pred ccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 95 PTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 95 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
+..+..+++|+++++++|++....|+.|..+++|+++++++|+|
T Consensus 18 ~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 18 PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45788999999999999999977788999999999999999975
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=5e-11 Score=95.73 Aligned_cols=152 Identities=26% Similarity=0.357 Sum_probs=99.6
Q ss_pred CcEEECcCCccccccCcch-hcccc-cccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeec-c------eeeeee
Q 039394 1 MEYLDLSDNQLSEEIPHCS-RYWQS-LKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDI-I------IVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~-~~l~~-L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~-~------~l~~l~ 68 (157)
|++|+|..|++. ..|+.+ .-... +..| +.|.+.. .|. .-..++.|+.|++.+|.++..+ | .|+.|+
T Consensus 312 L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 312 LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 578999999998 556544 22222 4445 4454442 332 2234678999999999998543 3 999999
Q ss_pred cccccccceE--EEceeeeeccc-cc----cccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 69 LQMVQKKNSI--AIINVVVVGEL-FK----RPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 69 l~~n~l~~~~--~~~~~~~l~~~-~~----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
++.|++...+ .+.++..++++ ++ ..+|..+..+..|+.|....|++. .+| .+..++.|+.+|++.|+++..
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 9999998665 45555555554 22 245666666777777777777766 555 667777888888888877543
Q ss_pred -CCCC---CCcccccCCCC
Q 039394 142 -IPSG---TKLQTLDASSY 156 (157)
Q Consensus 142 -~p~~---~~l~~l~~~~~ 156 (157)
+|.. ++|+.||++.+
T Consensus 468 ~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhhCCCcccceeeccCC
Confidence 2222 67777777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=9e-11 Score=86.11 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=7.0
Q ss_pred CCCCEEEccCCcce
Q 039394 45 RPVQVLDISYSSIL 58 (157)
Q Consensus 45 ~~L~~L~l~~n~~~ 58 (157)
++|+.+++++|.++
T Consensus 137 ~~L~~L~L~~n~l~ 150 (319)
T cd00116 137 PALEKLVLGRNRLE 150 (319)
T ss_pred CCceEEEcCCCcCC
Confidence 44555555555444
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=3e-09 Score=90.21 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=81.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQK 74 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l 74 (157)
|+.|++++|.....+|.++..+++|+.| .+|...+.+|..+ .+++|+.|++++|.....+| +++.|++++|.+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 3556677666555677777777777777 4443333555554 56777777777764333333 666777777777
Q ss_pred cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCc
Q 039394 75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK 137 (157)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 137 (157)
. .+|.++..+++|+.|+++++.-...+|..+..++.|+.+++++|.
T Consensus 859 ~-----------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 859 E-----------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-----------------cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6 578888888888888888754444677777888888888888774
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=4.8e-11 Score=88.15 Aligned_cols=43 Identities=28% Similarity=0.244 Sum_probs=34.5
Q ss_pred ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.|+.+++|+.+++++|++...-+.+|.....++.|++..|++.
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 4788999999999999998777777777777777777777663
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=3.2e-10 Score=83.18 Aligned_cols=139 Identities=20% Similarity=0.158 Sum_probs=71.2
Q ss_pred cEEECcCCcccc------ccCcchhcccccccc--ccccceeecCccCcCCCC---CCEEEccCCccee-----------
Q 039394 2 EYLDLSDNQLSE------EIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRP---VQVLDISYSSILG----------- 59 (157)
Q Consensus 2 ~~L~L~~n~l~~------~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~---L~~L~l~~n~~~~----------- 59 (157)
++++++++.+.+ .++..+..+++|+.| .+|.+.+..+..+..+.+ |++|++++|++.+
T Consensus 54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~ 133 (319)
T cd00116 54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133 (319)
T ss_pred eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH
Confidence 445555555441 123344555566666 555554434444434433 7777777776641
Q ss_pred ec-ceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCC----C
Q 039394 60 DI-IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGK----I 118 (157)
Q Consensus 60 ~~-~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~----~ 118 (157)
.. ++++.+++++|.+.+.. .+..+..++++ +.+ .++..+..+++|++|++++|.+.+. +
T Consensus 134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 12 45677777777666311 12222222222 211 1223334445677777777766532 2
Q ss_pred ChhhhcCCCCCeEEccCCccee
Q 039394 119 PEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 119 p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+..+..+++|++|++++|.+++
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHhcccCCCCEEecCCCcCch
Confidence 3344556677777777776653
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=9.9e-09 Score=83.18 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=87.3
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee---cceeeeeecccccccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD---IIIVSMIDLQMVQKKN 76 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~---~~~l~~l~l~~n~l~~ 76 (157)
..|+++.+.++ .+|+.+. .+|+.| ..|.++ .+|. .+++|++|++++|+++.. .++++.|++++|.+..
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 276 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchhh
Confidence 46899999998 7787765 468888 677777 4554 257899999999988732 2378889999998876
Q ss_pred eE----EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcC-----------------CCCCeEEccC
Q 039394 77 SI----AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL-----------------GLLGVLSLSN 135 (157)
Q Consensus 77 ~~----~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-----------------~~L~~L~ls~ 135 (157)
.+ .+..+....+.+. .+|. ..++|+.|++++|++.+ +|.....+ .+|+.|++++
T Consensus 277 Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~ 351 (788)
T PRK15387 277 LPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD 351 (788)
T ss_pred hhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCC
Confidence 54 2222221111122 2343 23678999999998874 44321111 2455566666
Q ss_pred CcceecCCCC-CCcccccCCC
Q 039394 136 NKLSGKIPSG-TKLQTLDASS 155 (157)
Q Consensus 136 N~l~~~~p~~-~~l~~l~~~~ 155 (157)
|.+.+ +|.. ..++.|+++.
T Consensus 352 N~Ls~-LP~lp~~L~~L~Ls~ 371 (788)
T PRK15387 352 NQLAS-LPTLPSELYKLWAYN 371 (788)
T ss_pred CccCC-CCCCCcccceehhhc
Confidence 66653 3332 5555555544
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=2.7e-09 Score=59.73 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=51.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI 57 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 57 (157)
|++|++++|+++...+..|..+++|++| ..|.+....|..|..+++|+++++++|++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999996666788999999999 89999988888999999999999999975
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.5e-08 Score=76.77 Aligned_cols=49 Identities=41% Similarity=0.491 Sum_probs=30.9
Q ss_pred ccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394 95 PTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 95 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
+..++.+.+++.+++++|.+. .++. ++...+++.+++++|.+....|..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 455566666777777777765 3333 666677777777777666555444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=1.4e-07 Score=63.68 Aligned_cols=95 Identities=28% Similarity=0.297 Sum_probs=33.5
Q ss_pred CcCCCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCcc
Q 039394 41 LCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114 (157)
Q Consensus 41 ~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l 114 (157)
+.+..++++|++++|.|+. .+.+++.|++++|.+.. ++ .+..++.|+.|++++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-----------------l~-~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-----------------LE-GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-------------------T-T----TT--EEE--SS--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-----------------cc-CccChhhhhhcccCCCCC
Confidence 3455678999999998862 23478999999999983 33 577789999999999998
Q ss_pred CCCCChhh-hcCCCCCeEEccCCcceecCCCC------CCcccccCCC
Q 039394 115 IGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG------TKLQTLDASS 155 (157)
Q Consensus 115 ~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~------~~l~~l~~~~ 155 (157)
. .+.+.+ ..+++|+.|++++|.|... .+. ++|+.|++..
T Consensus 77 ~-~i~~~l~~~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 77 S-SISEGLDKNLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT
T ss_pred C-ccccchHHhCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccC
Confidence 8 565555 4699999999999998642 222 6777777654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.3e-07 Score=71.70 Aligned_cols=152 Identities=29% Similarity=0.390 Sum_probs=104.3
Q ss_pred cEEECcCCccccccCcchhccc-ccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQ-SLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~-~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n 72 (157)
+.+++.+|.++ .++.....+. +|+.| ..|.+. .+|..+..++.|+.|+++.|++.. ..+.++.+++++|
T Consensus 119 ~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred eEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC
Confidence 46777788877 5666666663 78888 566665 455567788888888888887752 3347777888888
Q ss_pred cccceE-EEceeeeeccc-c----ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC--C
Q 039394 73 QKKNSI-AIINVVVVGEL-F----KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP--S 144 (157)
Q Consensus 73 ~l~~~~-~~~~~~~l~~~-~----~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~ 144 (157)
.+.... .+.....+.++ + .-..+..+..+..+..+.+.+|++. .++..++.+..++.|++++|.++...+ .
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~ 275 (394)
T COG4886 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGS 275 (394)
T ss_pred ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccccccc
Confidence 888766 22233333333 1 1135566777888888888888865 557778888899999999998875433 2
Q ss_pred CCCcccccCCCC
Q 039394 145 GTKLQTLDASSY 156 (157)
Q Consensus 145 ~~~l~~l~~~~~ 156 (157)
...++.+|++..
T Consensus 276 ~~~l~~L~~s~n 287 (394)
T COG4886 276 LTNLRELDLSGN 287 (394)
T ss_pred cCccCEEeccCc
Confidence 277777777653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=8e-08 Score=69.52 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=55.6
Q ss_pred ccCcCCCCCCEEEccCCcce------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCC
Q 039394 39 IRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRN 112 (157)
Q Consensus 39 ~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N 112 (157)
.....|..|+++|+|+|.|+ ..+|.++.|+++.|.+.. -..+..+.+|++||+++|
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~------------------v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT------------------VQNLAELPQLQLLDLSGN 339 (490)
T ss_pred EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee------------------ehhhhhcccceEeecccc
Confidence 34556778999999999875 346788999999998863 234666777777777777
Q ss_pred ccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 113 QPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 113 ~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
.+. .+..+-..+-+++.|.++.|.+
T Consensus 340 ~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 340 LLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 765 4444444555556666666554
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=8.2e-07 Score=46.15 Aligned_cols=38 Identities=45% Similarity=0.544 Sum_probs=31.0
Q ss_pred cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 102 TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 102 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
++|++|++++|++. .+|..++.+++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46889999999988 677778999999999999998873
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.2e-08 Score=80.97 Aligned_cols=116 Identities=25% Similarity=0.251 Sum_probs=83.8
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n 72 (157)
.+.+.++|.+. .+..++.-++.++.| ..|.+.. + +.+.+++.|++||+++|.+. .+| .|..|.+++|
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence 45567778777 677778888888888 6676663 3 36788888889999888875 233 6777888888
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcce
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.+.. -..+.++++|..||+++|-+.+.- -..+..+..|+.|++.+|++.
T Consensus 243 ~l~t------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTT------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHh------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8763 235677888899999999887532 122455667888888888873
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.23 E-value=8.5e-08 Score=71.35 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=73.1
Q ss_pred ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eee-eeecccccccceE--EEceeeeeccc------ccc
Q 039394 29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVS-MIDLQMVQKKNSI--AIINVVVVGEL------FKR 92 (157)
Q Consensus 29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~-~l~l~~n~l~~~~--~~~~~~~l~~~------~~~ 92 (157)
..|.++...|..|+.+++|+.||+|.|.|+..-| ++. .+..++|++.+.+ .+..+..+.-+ +..
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence 6777776777778888888888888887763333 332 3344557777665 44444444333 333
Q ss_pred ccccccccccCCCEEecCCCccCCCCCh-hhhcCCCCCeEEccCCc
Q 039394 93 PIPTKIDQLTMLHALDLSRNQPIGKIPE-GISQLGLLGVLSLSNNK 137 (157)
Q Consensus 93 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~ls~N~ 137 (157)
...+.+..++++..|.+.+|.+. .++. ++..+.+++.+.++.|+
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 45667788888888888888866 4544 67788888888888877
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.22 E-value=8.4e-08 Score=70.12 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=33.9
Q ss_pred cccccccCCCEEecCCCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394 96 TKIDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 96 ~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
..+..+++|+.||+++|.|... +...+..+++|+.++++++.+.
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 4567889999999999988653 3445667888889999888764
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=2.2e-07 Score=59.95 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCCCCEEEccCCcceee-------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC
Q 039394 44 VRPVQVLDISYSSILGD-------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG 116 (157)
Q Consensus 44 l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~ 116 (157)
-..|..+++++|.++.. +|..+.+++++|+++ .+|.++..++.|+.++++.|.+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-----------------dvPeE~Aam~aLr~lNl~~N~l~- 113 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-----------------DVPEELAAMPALRSLNLRFNPLN- 113 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-----------------hchHHHhhhHHhhhcccccCccc-
Confidence 34455566777766522 225566677777776 57888888888888888888876
Q ss_pred CCChhhhcCCCCCeEEccCCcce
Q 039394 117 KIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 117 ~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
..|..+..+.++..|+..+|.+.
T Consensus 114 ~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cchHHHHHHHhHHHhcCCCCccc
Confidence 56677777888888888777754
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1.2e-06 Score=67.01 Aligned_cols=115 Identities=27% Similarity=0.350 Sum_probs=72.4
Q ss_pred EECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeecccccccc
Q 039394 4 LDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQKKN 76 (157)
Q Consensus 4 L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~ 76 (157)
+.+..|.+. .+-..+..+.+++.+ ..|.+.+ +...+..+++|++|++++|.|+.. ++.|+.|++.+|.++.
T Consensus 77 l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 77 LNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred hccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccCcchh
Confidence 344555555 233445666777777 6666664 333366788888888888887633 2267777888888763
Q ss_pred eEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChh-hhcCCCCCeEEccCCcce
Q 039394 77 SIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~ 139 (157)
. ..+..++.|+.+++++|.+.. +... ...+.+++.+++++|.+.
T Consensus 155 ~------------------~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 155 I------------------SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred c------------------cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh
Confidence 2 234446777777888887663 3321 356667777777777654
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1.2e-05 Score=41.69 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred ccccccccccCCCEEecCCCccC
Q 039394 93 PIPTKIDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 93 ~~p~~~~~l~~L~~L~l~~N~l~ 115 (157)
.+|..+..+++|+.|++++|++.
T Consensus 15 ~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 15 DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ccCchHhCCCCCCEEEecCCCCC
Confidence 57777999999999999999977
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.94 E-value=5.7e-06 Score=68.58 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=57.5
Q ss_pred ccccc--cccc--ceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeecccccc
Q 039394 24 SLKVL--KSNH--INGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGELFKR 92 (157)
Q Consensus 24 ~L~~L--~~n~--~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~ 92 (157)
.|++| ..|. +....+..|..++.|++||+++|.--+.+| +|+.|+++...+.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~----------------- 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS----------------- 608 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----------------
Confidence 46666 4443 343344456678888888888765444444 5556666665555
Q ss_pred ccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394 93 PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136 (157)
Q Consensus 93 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 136 (157)
.+|..+..++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 46666666666666666666554445555555666666666543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.9e-06 Score=64.03 Aligned_cols=140 Identities=22% Similarity=0.190 Sum_probs=81.5
Q ss_pred CcEEECcCCccccccCcc-hhcccccccc--ccccce-eecCccCcCCCCCCEEEccCCc-ceee------cceeeeeec
Q 039394 1 MEYLDLSDNQLSEEIPHC-SRYWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSS-ILGD------IIIVSMIDL 69 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~-~~~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~-~~~~------~~~l~~l~l 69 (157)
|+.|+++.|.+.--+... -..+++|+.| +.+.++ ..+......+|++++|++..|. +... +..++.|++
T Consensus 174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 467888888876322211 1356677777 555554 3455556678888888888884 2111 117788888
Q ss_pred ccccccceE---EEceeeeeccc---ccc----ccccc-----cccccCCCEEecCCCccCCCCC--hhhhcCCCCCeEE
Q 039394 70 QMVQKKNSI---AIINVVVVGEL---FKR----PIPTK-----IDQLTMLHALDLSRNQPIGKIP--EGISQLGLLGVLS 132 (157)
Q Consensus 70 ~~n~l~~~~---~~~~~~~l~~~---~~~----~~p~~-----~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~ 132 (157)
++|.+-+.. ....++.++.+ ..+ ..|+. ...++.|++|++..|++. .++ ..+..+.+++.+.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 888876544 22233222222 111 22322 244567888888888874 222 2345566777777
Q ss_pred ccCCcceec
Q 039394 133 LSNNKLSGK 141 (157)
Q Consensus 133 ls~N~l~~~ 141 (157)
+..|.+..+
T Consensus 333 ~~~n~ln~e 341 (505)
T KOG3207|consen 333 ITLNYLNKE 341 (505)
T ss_pred ccccccccc
Confidence 777776543
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.2e-06 Score=63.78 Aligned_cols=138 Identities=18% Similarity=0.175 Sum_probs=85.4
Q ss_pred CcEEECcCCcccc--ccCcchhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcce--------eecceeeee
Q 039394 1 MEYLDLSDNQLSE--EIPHCSRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSIL--------GDIIIVSMI 67 (157)
Q Consensus 1 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~--------~~~~~l~~l 67 (157)
++.|||++|-+.. .+-.....+++|+.| +.|.+.-..... -..++.++.|.++.|.++ ..+|+++.|
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L 227 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL 227 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence 3578999998872 122334678899999 777776322221 225788999999999875 356799999
Q ss_pred ecccccccce-E-EEceeeeeccc-------cccccccccccccCCCEEecCCCccCC-CCChh-----hhcCCCCCeEE
Q 039394 68 DLQMVQKKNS-I-AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEG-----ISQLGLLGVLS 132 (157)
Q Consensus 68 ~l~~n~l~~~-~-~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~-----~~~l~~L~~L~ 132 (157)
++..|..... . ....+..+.++ +.-..-...+.++.|..|+++.+.+.. ..|+. ...+++|++|+
T Consensus 228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 228 YLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred hhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 9999952211 1 11112222222 111111235667777777777777653 23333 45678888999
Q ss_pred ccCCcc
Q 039394 133 LSNNKL 138 (157)
Q Consensus 133 ls~N~l 138 (157)
+..|++
T Consensus 308 i~~N~I 313 (505)
T KOG3207|consen 308 ISENNI 313 (505)
T ss_pred cccCcc
Confidence 999888
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=1.9e-06 Score=55.69 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCCEEEccCCccee------ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCC
Q 039394 44 VRPVQVLDISYSSILG------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117 (157)
Q Consensus 44 l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~ 117 (157)
++.++.++++.|.+.. .+|.|+.+++++|++. ..|+-+..+.++-.|+...|.+. +
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-----------------~~p~vi~~L~~l~~Lds~~na~~-e 137 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-----------------AEPRVIAPLIKLDMLDSPENARA-E 137 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-----------------cchHHHHHHHhHHHhcCCCCccc-c
Confidence 3345555555555541 1225555555555554 46666666778888888888865 5
Q ss_pred CChhhhcCCCCCeEEccCCcceecCCC
Q 039394 118 IPEGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 118 ~p~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
+|-.+-.-......+++++++.+.-+.
T Consensus 138 id~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 138 IDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CcHHHhccccHHHHHhcCCcccccCcc
Confidence 554433333333445566666665443
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.82 E-value=8.1e-06 Score=67.69 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=60.2
Q ss_pred chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeeecc
Q 039394 18 CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVVGE 88 (157)
Q Consensus 18 ~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l~~ 88 (157)
.|..|+.|.+| +.|.--+.+|..++.+-+|++|++++..+. ++| .+..|++..+.-..
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------------ 632 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------------ 632 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc------------
Confidence 35667777777 445555567777777777777777777766 444 55556665544321
Q ss_pred ccccccccccccccCCCEEecCCCcc--CCCCChhhhcCCCCCeEEcc
Q 039394 89 LFKRPIPTKIDQLTMLHALDLSRNQP--IGKIPEGISQLGLLGVLSLS 134 (157)
Q Consensus 89 ~~~~~~p~~~~~l~~L~~L~l~~N~l--~~~~p~~~~~l~~L~~L~ls 134 (157)
.+|.....+.+|++|.+..-.. .+..-+.+..+.+|+.+...
T Consensus 633 ----~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 633 ----SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ----cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 2345556688888888776542 22333445556666655554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=5.5e-06 Score=63.46 Aligned_cols=75 Identities=24% Similarity=0.269 Sum_probs=54.3
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
|+.+++..|.+. .+...+..+++|++| +.|.+...- .+..++.|+.|++++|.+.. .++.++.+++++|.
T Consensus 97 l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 97 LEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred eeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccCCcch
Confidence 457888889888 555447778889998 778777532 24567778899999998762 23477788888888
Q ss_pred ccceE
Q 039394 74 KKNSI 78 (157)
Q Consensus 74 l~~~~ 78 (157)
+....
T Consensus 174 i~~ie 178 (414)
T KOG0531|consen 174 IVDIE 178 (414)
T ss_pred hhhhh
Confidence 77544
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00038 Score=53.06 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--c-cccceeecCccCcCCCCCCEEEccCC-cceeecc-eeeeeeccccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--K-SNHINGCVPIRLCYVRPVQVLDISYS-SILGDII-IVSMIDLQMVQKK 75 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~-~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~-~l~~l~l~~n~l~ 75 (157)
++.|++++|.++ .+|. + -.+|+.| . .+.+ ..+|+.+ .++|++|++++| .+. .+| +++.|++..+...
T Consensus 54 l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~L~~n~~~ 125 (426)
T PRK15386 54 SGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLEIKGSATD 125 (426)
T ss_pred CCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-ccccccceEEeCCCCCc
Confidence 467888888777 5552 2 2347777 2 2333 3455544 357888888887 554 444 7777887766543
Q ss_pred ce---E-EEceeeeecc--ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394 76 NS---I-AIINVVVVGE--LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136 (157)
Q Consensus 76 ~~---~-~~~~~~~l~~--~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 136 (157)
.. + .+..+..-.. .....+|. ....+|++|+++++... .+|+.+. .+|+.|+++.+
T Consensus 126 ~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 126 SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 22 1 1221111000 00000110 11247888888877754 3444333 47788888765
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=1.4e-05 Score=64.13 Aligned_cols=56 Identities=32% Similarity=0.400 Sum_probs=34.5
Q ss_pred ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCC
Q 039394 97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASS 155 (157)
Q Consensus 97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~ 155 (157)
++..++.++.|++++|++++ +. .+..++.|++||+++|.+. .+|.. .+++.|.++.
T Consensus 182 SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 45556677777777777663 32 5667777777777777765 33333 4455555443
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.45 E-value=1.3e-05 Score=59.03 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=43.9
Q ss_pred ccccccccCCCEEecCCCccCCC----CChhhhcCCCCCeEEccCCcceec--------CCCCCCcccccCCCC
Q 039394 95 PTKIDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVLSLSNNKLSGK--------IPSGTKLQTLDASSY 156 (157)
Q Consensus 95 p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~--------~p~~~~l~~l~~~~~ 156 (157)
...+..++.|+.+.++.|.+... +...+..+++|+.||+.+|-++.. +|.-+.++.++++.+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 34567778899999999987532 223467899999999999987532 222266777777665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=9.7e-05 Score=53.77 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=38.7
Q ss_pred cccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceecCCCC----------CCcccccCC
Q 039394 98 IDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGKIPSG----------TKLQTLDAS 154 (157)
Q Consensus 98 ~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p~~----------~~l~~l~~~ 154 (157)
...++.+..|+++.|++... .-+.+..++.+..+.+++|+++..+-.. ++.++|+-+
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 44566677788888887642 1345788999999999999885433222 666666554
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00011 Score=59.81 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=67.9
Q ss_pred CcEEECcCCccc-cccCcch-hcccccccc--ccccce-eecCccCcCCCCCCEEEccCCccee-----ecceeeeeecc
Q 039394 1 MEYLDLSDNQLS-EEIPHCS-RYWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~-~~~p~~~-~~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~ 70 (157)
|++|++++.+.- ..+|..+ ..+|+|+.| .+-.+. +....-+.++++|..||+|+..++. .+.+|+.|.+.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMR 203 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhcc
Confidence 455666654432 1233333 446777777 222221 2233345567777777777776651 22355555555
Q ss_pred cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhh-------hcCCCCCeEEccCCccee
Q 039394 71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-------SQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-------~~l~~L~~L~ls~N~l~~ 140 (157)
+-.+... ..-..+..+++|+.||+|..+... .+..+ ..++.|+.||+|+..+..
T Consensus 204 nLe~e~~---------------~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 204 NLEFESY---------------QDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCCCCch---------------hhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5444321 112245678888888888866442 22221 237788889988776644
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.002 Score=44.45 Aligned_cols=39 Identities=10% Similarity=-0.098 Sum_probs=25.1
Q ss_pred ccCcCCCCCCEEEccCCcceeec-------ceeeeeecccccccce
Q 039394 39 IRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMVQKKNS 77 (157)
Q Consensus 39 ~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n~l~~~ 77 (157)
+.|.++++|.+|.+++|+|+..- |.++.|.+.+|.+...
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 34667777777777777776322 2566677777766543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.00031 Score=50.62 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=67.9
Q ss_pred hhcccccccc--ccccceeecCc----cCcCCCCCCEEEccCCccee--------------------ecceeeeeecccc
Q 039394 19 SRYWQSLKVL--KSNHINGCVPI----RLCYVRPVQVLDISYSSILG--------------------DIIIVSMIDLQMV 72 (157)
Q Consensus 19 ~~~l~~L~~L--~~n~~~~~~p~----~~~~l~~L~~L~l~~n~~~~--------------------~~~~l~~l~l~~n 72 (157)
+..|+.++.. +.|.+....|. .+++-+.|.+|.+++|.+.. .-|.++.+++..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4555666666 66666544333 35566777777777776531 1227777777777
Q ss_pred cccceE------EEceeeeeccc---cccccccc--------cccccCCCEEecCCCccCCC----CChhhhcCCCCCeE
Q 039394 73 QKKNSI------AIINVVVVGEL---FKRPIPTK--------IDQLTMLHALDLSRNQPIGK----IPEGISQLGLLGVL 131 (157)
Q Consensus 73 ~l~~~~------~~~~~~~l~~~---~~~~~p~~--------~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L 131 (157)
++.... .+.....+.++ -.+.-|.. +..+++|+.||+.+|.++.. +...+..++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 776543 11111111111 12223332 33467788888888877643 23344556667777
Q ss_pred EccCCccee
Q 039394 132 SLSNNKLSG 140 (157)
Q Consensus 132 ~ls~N~l~~ 140 (157)
.+.+|-++.
T Consensus 248 ~lnDClls~ 256 (388)
T COG5238 248 RLNDCLLSN 256 (388)
T ss_pred cccchhhcc
Confidence 777776543
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.62 E-value=0.00088 Score=29.17 Aligned_cols=20 Identities=50% Similarity=0.775 Sum_probs=16.5
Q ss_pred CcEEECcCCccccccCcchhc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRY 21 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~ 21 (157)
|++|++++|+++ .+|+.|..
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 689999999999 78876654
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=7.8e-05 Score=54.26 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=76.7
Q ss_pred CcEEECcCCccccc-cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCC-ccee--------ecceeeeee
Q 039394 1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SILG--------DIIIVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~~l~~l~ 68 (157)
|++||||+-.++.. +-.-+..+.+|+.| .++++...+-..+..=.+|+.++++.+ .++. ....+..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 35677777776621 22234556677777 677777666666777777777777764 2321 111555556
Q ss_pred cccccccceE----------EEceeeeeccc---cccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEcc
Q 039394 69 LQMVQKKNSI----------AIINVVVVGEL---FKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLS 134 (157)
Q Consensus 69 l~~n~l~~~~----------~~~~~~~l~~~---~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls 134 (157)
++.+-+.... .+.+++...+. ....+..-...++++.+||++++.... ..-.++..++-|+++.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 6655554321 22222222111 111233334678888899998875432 233345667778888887
Q ss_pred CCc
Q 039394 135 NNK 137 (157)
Q Consensus 135 ~N~ 137 (157)
.+-
T Consensus 347 RCY 349 (419)
T KOG2120|consen 347 RCY 349 (419)
T ss_pred hhc
Confidence 764
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.36 E-value=0.0011 Score=28.86 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=11.1
Q ss_pred CCEEecCCCccCCCCChhhh
Q 039394 104 LHALDLSRNQPIGKIPEGIS 123 (157)
Q Consensus 104 L~~L~l~~N~l~~~~p~~~~ 123 (157)
|++|++++|++. .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666655 5555444
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.29 E-value=0.0015 Score=53.38 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=59.3
Q ss_pred CCCCCEEEccCCcce--------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccC
Q 039394 44 VRPVQVLDISYSSIL--------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 44 l~~L~~L~l~~n~~~--------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~ 115 (157)
+|+|+.|.+++=.+. ..+|+|..||+++..+.. + .+++.+++|+.|.+.+=.+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-----------------l-~GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-----------------L-SGISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-----------------c-HHHhccccHHHHhccCCCCC
Confidence 677777777664332 356688888888877762 2 45677777777777665544
Q ss_pred C-CCChhhhcCCCCCeEEccCCcceec--CCCC--------CCcccccCCC
Q 039394 116 G-KIPEGISQLGLLGVLSLSNNKLSGK--IPSG--------TKLQTLDASS 155 (157)
Q Consensus 116 ~-~~p~~~~~l~~L~~L~ls~N~l~~~--~p~~--------~~l~~l~~~~ 155 (157)
. .--..+..+++|++||+|....... +... +.|+.||++.
T Consensus 209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 2 1123466799999999997543211 1111 6777777763
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.27 E-value=0.019 Score=44.06 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=29.4
Q ss_pred hcccccccc--ccccceeecCccCcCCCCCCEEEccCC-cce---eecc-eeeeeecccc-cccc
Q 039394 20 RYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SIL---GDII-IVSMIDLQMV-QKKN 76 (157)
Q Consensus 20 ~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~---~~~~-~l~~l~l~~n-~l~~ 76 (157)
..+.++..| ..|.+. .+|. -.++|+.|.++++ .++ +.+| +|+.|.+++| .+..
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc
Confidence 345667777 455444 3442 2345788887663 322 1222 7777888777 4443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.005 Score=43.88 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=9.3
Q ss_pred CcCCCCCCEEEccCC
Q 039394 41 LCYVRPVQVLDISYS 55 (157)
Q Consensus 41 ~~~l~~L~~L~l~~n 55 (157)
+-.+++|+.|.++.|
T Consensus 61 ~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDN 75 (260)
T ss_pred CCCcchhhhhcccCC
Confidence 444566666666666
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.06 E-value=0.0095 Score=41.22 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce--------eecceeeeeecccc
Q 039394 3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL--------GDIIIVSMIDLQMV 72 (157)
Q Consensus 3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~--------~~~~~l~~l~l~~n 72 (157)
.+||++|.+. .+ .-+..++.|++| .+|+++..-|.--.-+++|..|.+.+|.|. ..+|.|+.|.+=+|
T Consensus 46 ~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 5788888886 33 346677888888 788888665655455678999999999875 24557777777777
Q ss_pred cccc
Q 039394 73 QKKN 76 (157)
Q Consensus 73 ~l~~ 76 (157)
....
T Consensus 124 pv~~ 127 (233)
T KOG1644|consen 124 PVEH 127 (233)
T ss_pred chhc
Confidence 7654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.00051 Score=49.68 Aligned_cols=45 Identities=27% Similarity=0.260 Sum_probs=21.6
Q ss_pred cccccCCCEEecCCCccCCCCCh--hhhcCCCCCeEEccCCcceecCC
Q 039394 98 IDQLTMLHALDLSRNQPIGKIPE--GISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 98 ~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
+..|+.|++|.+..|.|. .+.+ .+.++++|+.|.+..|+=.|.-+
T Consensus 59 l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 344555555555555544 2211 23445555555555555444333
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.09 E-value=0.0091 Score=43.32 Aligned_cols=44 Identities=32% Similarity=0.297 Sum_probs=35.8
Q ss_pred cccccccCCCEEecCCCccCCCCChhh----hcCCCCCeEEccCCcce
Q 039394 96 TKIDQLTMLHALDLSRNQPIGKIPEGI----SQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~ 139 (157)
..+-+|+.++..++|+|.|....|+.+ .....+.+|.+++|.+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 346678999999999999988777764 45678999999999763
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.0039 Score=45.27 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=47.1
Q ss_pred CcCCCCCCEEEccCCcceeecc-----eeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccC
Q 039394 41 LCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 41 ~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~ 115 (157)
+..|+.|++|.+|-|+|+..-| .|+.|++.-|.+.+..++ .-+.++++|+.|++..|.-.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL---------------~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL---------------EYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH---------------HHHhcCchhhhHhhccCCcc
Confidence 3456777777777777764433 566666666666532111 12456777888888888777
Q ss_pred CCCChh-----hhcCCCCCeEE
Q 039394 116 GKIPEG-----ISQLGLLGVLS 132 (157)
Q Consensus 116 ~~~p~~-----~~~l~~L~~L~ 132 (157)
+..+.. +.-+++|+.||
T Consensus 102 ~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 102 GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccchhHHHHHHHHcccchhcc
Confidence 765442 44566666655
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.28 E-value=0.034 Score=39.78 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCccCcCCCCCCEEEccCCccee-----ecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCC
Q 039394 37 VPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSR 111 (157)
Q Consensus 37 ~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~ 111 (157)
+....-.+..++.+.+.+..++. .+|+|+.|.++.|.+... ..++.-...+++|+++++++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--------------~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--------------GGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCccccc--------------ccceehhhhCCceeEEeecC
Confidence 33333444555566555555542 233777777777744321 23333445557888888888
Q ss_pred CccCCCCChh---hhcCCCCCeEEccCCccee
Q 039394 112 NQPIGKIPEG---ISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 112 N~l~~~~p~~---~~~l~~L~~L~ls~N~l~~ 140 (157)
|++.. +++ +..+.+|..|++.+|..++
T Consensus 101 Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 101 NKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred Ccccc--ccccchhhhhcchhhhhcccCCccc
Confidence 88662 333 3445667777877776554
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.72 E-value=0.039 Score=22.25 Aligned_cols=12 Identities=50% Similarity=0.811 Sum_probs=8.2
Q ss_pred CcEEECcCCccc
Q 039394 1 MEYLDLSDNQLS 12 (157)
Q Consensus 1 L~~L~L~~n~l~ 12 (157)
|++|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 688999999987
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.026 Score=41.52 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=46.3
Q ss_pred CCCCCEEEccCCcce---------eecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCcc
Q 039394 44 VRPVQVLDISYSSIL---------GDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQP 114 (157)
Q Consensus 44 l~~L~~L~l~~n~~~---------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l 114 (157)
.+.++.+|+.+|.|+ ..+|.+++|+++.|++...+ +..| ....+|+.+-+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-------------~~lp---~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-------------KSLP---LPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-------------ccCc---ccccceEEEEEcCCCC
Confidence 456777788888765 35667777777777776421 0122 2234556665555443
Q ss_pred CC-CCChhhhcCCCCCeEEccCCcce
Q 039394 115 IG-KIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 115 ~~-~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.= .....+..++.++.|+++.|.+.
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhh
Confidence 21 22334556677777777777543
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.027 Score=41.48 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=74.0
Q ss_pred CcEEECcCCccccccCcchhcccccccc--c-ccccee-ecCccCcCCCCCCEEEccCCcceee---------cceeeee
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--K-SNHING-CVPIRLCYVRPVQVLDISYSSILGD---------IIIVSMI 67 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~-~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~---------~~~l~~l 67 (157)
|+-|.+.++++.+.+-..++.=.+|+.+ + .+.++. ...-.+.+++.|..|+++++.+... .+.+..|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 4567788888887777777777778877 2 233331 1222355677888888888765321 1144555
Q ss_pred eccccccc--c-eE--EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChh---hhcCCCCCeEE
Q 039394 68 DLQMVQKK--N-SI--AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG---ISQLGLLGVLS 132 (157)
Q Consensus 68 ~l~~n~l~--~-~~--~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~ 132 (157)
+++++.-. . +. -..+++.+.++ +......++.+++.|+++.++.+. +.+|.. +...+++.+||
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEE
Confidence 55544211 1 00 11222222222 222344556777888888877765 234554 45667777777
Q ss_pred ccC
Q 039394 133 LSN 135 (157)
Q Consensus 133 ls~ 135 (157)
+.+
T Consensus 370 v~g 372 (419)
T KOG2120|consen 370 VFG 372 (419)
T ss_pred ecc
Confidence 654
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.23 E-value=0.24 Score=21.99 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=11.3
Q ss_pred cCCCEEecCCCccCCCCCh
Q 039394 102 TMLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 102 ~~L~~L~l~~N~l~~~~p~ 120 (157)
++|+.|++++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45677777777766 4443
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.23 E-value=0.24 Score=21.99 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=11.3
Q ss_pred cCCCEEecCCCccCCCCCh
Q 039394 102 TMLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 102 ~~L~~L~l~~N~l~~~~p~ 120 (157)
++|+.|++++|++. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45677777777766 4443
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.02 E-value=0.034 Score=24.42 Aligned_cols=13 Identities=54% Similarity=0.547 Sum_probs=5.2
Q ss_pred CCCEEecCCCccC
Q 039394 103 MLHALDLSRNQPI 115 (157)
Q Consensus 103 ~L~~L~l~~N~l~ 115 (157)
+|++|++++|++.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4445555555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.63 E-value=0.8 Score=28.68 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=17.5
Q ss_pred chhcccccccc-ccccceeecCccCcCCCCCCEEEccCC
Q 039394 18 CSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYS 55 (157)
Q Consensus 18 ~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n 55 (157)
+|..+.+|+.+ -.+.+.......|..+++++.+.+..+
T Consensus 7 ~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST
T ss_pred HHhCCCCCCEEEECCCeeEeChhhccccccccccccccc
Confidence 45555566666 333445444556666767777777554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.36 E-value=1.3 Score=27.77 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=27.3
Q ss_pred cEEECcCCccccccCcchhcccccccc-ccccceeecCccCcCCCCCCEEEccC
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISY 54 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~ 54 (157)
+.+.+.. .+...-..+|..+.+++.+ -.+.+.......+..+++++.+.+..
T Consensus 15 ~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 15 ESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred CEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence 4455553 4553445667788788888 33345545556677787888888854
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.33 E-value=0.55 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=11.4
Q ss_pred CCCCCEEEccCCcce
Q 039394 44 VRPVQVLDISYSSIL 58 (157)
Q Consensus 44 l~~L~~L~l~~n~~~ 58 (157)
+++|++|+++.|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888875
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.70 E-value=0.75 Score=20.78 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=11.4
Q ss_pred CCCEEecCCCccCCCCCh
Q 039394 103 MLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 103 ~L~~L~l~~N~l~~~~p~ 120 (157)
+|+.|++++|++. .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777766 5554
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.71 E-value=0.91 Score=20.67 Aligned_cols=14 Identities=57% Similarity=0.555 Sum_probs=9.6
Q ss_pred CCCCeEEccCCcce
Q 039394 126 GLLGVLSLSNNKLS 139 (157)
Q Consensus 126 ~~L~~L~ls~N~l~ 139 (157)
++|++||+++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777764
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.22 E-value=0.064 Score=38.22 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred cCcCCCCCCEEEccCCcceee------cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCc
Q 039394 40 RLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQ 113 (157)
Q Consensus 40 ~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~ 113 (157)
++....+.+.||++.|++... +..+..++++.|.+. ..|..++....+..++...|.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-----------------~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-----------------FLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-----------------hChhhHHHHHHHHHHHhhccc
Confidence 455666777777777765311 114455666666665 456666666666666666565
Q ss_pred cCCCCChhhhcCCCCCeEEccCCcc
Q 039394 114 PIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 114 l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
. ...|..++..+.++.++...|++
T Consensus 100 ~-~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 100 H-SQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred h-hhCCccccccCCcchhhhccCcc
Confidence 3 35666666666666666666654
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.56 E-value=3.3 Score=33.19 Aligned_cols=13 Identities=38% Similarity=0.358 Sum_probs=6.9
Q ss_pred CCCeEEccCCcce
Q 039394 127 LLGVLSLSNNKLS 139 (157)
Q Consensus 127 ~L~~L~ls~N~l~ 139 (157)
.|++|.+.+|++.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3455555555553
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=62.63 E-value=0.87 Score=32.69 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=38.9
Q ss_pred EEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394 3 YLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58 (157)
Q Consensus 3 ~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 58 (157)
.|+++.|++. ..|..+.....+..+ ..|..+ ..|.+++..+++++++.-+|.+.
T Consensus 69 rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 69 RLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 4566666665 567777766666666 444444 78899999999999998888764
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.53 E-value=15 Score=15.98 Aligned_cols=13 Identities=31% Similarity=0.115 Sum_probs=8.9
Q ss_pred CCCCCeEEccCCc
Q 039394 125 LGLLGVLSLSNNK 137 (157)
Q Consensus 125 l~~L~~L~ls~N~ 137 (157)
+++|+.|+++.+.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=18 Score=25.50 Aligned_cols=34 Identities=26% Similarity=0.153 Sum_probs=19.9
Q ss_pred cCCCEEecCCC-ccCCCCChhhhcCCCCCeEEccC
Q 039394 102 TMLHALDLSRN-QPIGKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 102 ~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~ls~ 135 (157)
++|+.|++++| +|+..--.++..+++|+.|++.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 46777777755 33433334456666666666554
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=24.32 E-value=46 Score=25.70 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=8.8
Q ss_pred CcCCCCCCEEEccC
Q 039394 41 LCYVRPVQVLDISY 54 (157)
Q Consensus 41 ~~~l~~L~~L~l~~ 54 (157)
....+.|+.+++++
T Consensus 210 ~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 210 ALKCPNLEELDLSG 223 (482)
T ss_pred HhhCchhheecccC
Confidence 44566677777665
Done!