Query 039394
Match_columns 157
No_of_seqs 108 out of 2452
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1E-22 3.4E-27 163.7 11.7 75 1-75 468-551 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 9.8E-22 3.3E-26 143.1 11.3 155 1-156 127-301 (313)
3 3rgz_A Protein brassinosteroid 99.9 8.9E-22 3E-26 158.2 11.9 155 1-155 492-733 (768)
4 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-21 1.2E-25 140.1 8.3 74 2-75 79-162 (313)
5 4fcg_A Uncharacterized protein 99.8 2E-20 6.7E-25 137.1 9.6 152 1-155 106-286 (328)
6 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.7E-25 138.5 8.1 152 1-154 129-309 (328)
7 3m19_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 124.7 12.9 140 1-156 37-189 (251)
8 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-19 1.8E-23 126.8 10.9 154 1-154 34-209 (285)
9 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-19 8.5E-24 128.5 8.3 156 1-156 58-235 (285)
10 2o6q_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 123.8 11.1 156 1-156 39-215 (270)
11 2z66_A Variable lymphocyte rec 99.8 2.2E-18 7.6E-23 124.6 11.2 155 1-156 80-258 (306)
12 3oja_A Leucine-rich immune mol 99.8 2.6E-18 9E-23 131.9 10.9 154 1-156 36-201 (487)
13 2z62_A TOLL-like receptor 4, v 99.8 2.2E-18 7.4E-23 123.1 9.7 155 1-155 30-209 (276)
14 3zyi_A Leucine-rich repeat-con 99.8 4.7E-18 1.6E-22 129.1 11.4 156 1-156 101-300 (452)
15 3e6j_A Variable lymphocyte rec 99.8 6.8E-18 2.3E-22 117.8 11.2 124 1-141 42-174 (229)
16 3zyj_A Leucine-rich repeat-con 99.8 4.9E-18 1.7E-22 128.7 11.3 156 1-156 90-289 (440)
17 3rfs_A Internalin B, repeat mo 99.8 1.4E-17 4.8E-22 118.8 12.7 137 1-155 65-214 (272)
18 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6E-22 115.1 11.6 121 2-138 35-164 (220)
19 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.6E-22 114.6 11.7 121 3-139 36-166 (220)
20 3v47_A TOLL-like receptor 5B a 99.7 5.4E-18 1.9E-22 128.5 8.7 58 1-58 105-167 (455)
21 2v9t_B SLIT homolog 2 protein 99.7 5.5E-17 1.9E-21 112.6 13.0 135 2-156 14-162 (220)
22 2id5_A Lingo-1, leucine rich r 99.7 8.1E-18 2.8E-22 128.4 9.6 154 1-154 34-208 (477)
23 3m19_A Variable lymphocyte rec 99.7 2.2E-17 7.6E-22 116.5 11.1 125 1-141 61-194 (251)
24 4eco_A Uncharacterized protein 99.7 2.9E-18 1E-22 135.4 7.2 153 1-156 208-412 (636)
25 1p9a_G Platelet glycoprotein I 99.7 2.3E-17 7.8E-22 118.9 11.3 136 2-139 34-185 (290)
26 3zyi_A Leucine-rich repeat-con 99.7 1.2E-17 4.2E-22 126.8 10.1 155 1-156 77-276 (452)
27 1p9a_G Platelet glycoprotein I 99.7 2.4E-17 8.1E-22 118.8 10.9 153 1-156 12-182 (290)
28 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 125.4 10.8 156 1-156 66-265 (440)
29 3rfs_A Internalin B, repeat mo 99.7 3.6E-17 1.2E-21 116.7 11.7 128 1-144 87-223 (272)
30 4eco_A Uncharacterized protein 99.7 1E-17 3.6E-22 132.2 9.5 92 63-156 489-597 (636)
31 2o6s_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 111.4 11.7 127 1-143 30-165 (208)
32 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.3E-22 121.0 9.4 152 1-155 36-200 (317)
33 3vq2_A TLR4, TOLL-like recepto 99.7 6.6E-18 2.3E-22 132.2 7.8 128 1-144 34-171 (606)
34 1xku_A Decorin; proteoglycan, 99.7 5.1E-17 1.7E-21 118.7 11.7 76 1-77 54-136 (330)
35 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.6E-21 111.1 12.7 136 2-156 14-163 (220)
36 3t6q_A CD180 antigen; protein- 99.7 1.9E-17 6.7E-22 129.5 10.0 155 1-155 35-211 (606)
37 3vq2_A TLR4, TOLL-like recepto 99.7 1.4E-17 4.8E-22 130.3 9.1 153 2-156 379-555 (606)
38 3t6q_A CD180 antigen; protein- 99.7 1.3E-17 4.5E-22 130.5 8.9 154 2-156 379-557 (606)
39 3v47_A TOLL-like receptor 5B a 99.7 5.4E-17 1.9E-21 123.0 11.7 129 1-145 277-414 (455)
40 2z66_A Variable lymphocyte rec 99.7 9.5E-18 3.3E-22 121.3 7.2 156 1-156 30-233 (306)
41 2ft3_A Biglycan; proteoglycan, 99.7 4.8E-17 1.6E-21 119.0 10.9 58 1-58 56-115 (332)
42 2ell_A Acidic leucine-rich nuc 99.7 7E-17 2.4E-21 107.3 10.7 120 1-139 26-160 (168)
43 4g8a_A TOLL-like receptor 4; l 99.7 6.7E-17 2.3E-21 126.4 11.6 129 1-145 54-192 (635)
44 4glp_A Monocyte differentiatio 99.7 1.6E-17 5.5E-22 120.5 7.5 34 1-34 93-130 (310)
45 2id5_A Lingo-1, leucine rich r 99.7 1.9E-17 6.6E-22 126.3 8.2 143 1-143 58-217 (477)
46 2o6q_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 115.4 9.8 141 1-141 63-220 (270)
47 2z81_A CD282 antigen, TOLL-lik 99.7 1.6E-17 5.6E-22 128.5 7.3 129 1-144 28-166 (549)
48 1wwl_A Monocyte differentiatio 99.7 4.8E-17 1.7E-21 118.2 9.2 150 1-155 123-305 (312)
49 4ecn_A Leucine-rich repeat pro 99.7 2.9E-17 9.9E-22 133.4 8.5 152 1-156 450-654 (876)
50 2z80_A TOLL-like receptor 2, v 99.7 3.3E-17 1.1E-21 120.8 7.5 138 1-138 54-210 (353)
51 2z63_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 126.6 8.4 145 1-145 30-196 (570)
52 2z62_A TOLL-like receptor 4, v 99.7 6.5E-17 2.2E-21 115.4 8.6 139 1-140 54-214 (276)
53 2z63_A TOLL-like receptor 4, v 99.7 4.3E-17 1.5E-21 126.5 8.2 155 1-156 349-528 (570)
54 3e6j_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 108.7 12.3 135 2-156 22-169 (229)
55 3oja_B Anopheles plasmodium-re 99.7 2E-16 6.9E-21 124.0 11.5 61 96-156 248-311 (597)
56 4ecn_A Leucine-rich repeat pro 99.7 2.1E-17 7.2E-22 134.2 5.7 41 97-139 568-608 (876)
57 2je0_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 103.4 8.9 119 1-154 19-148 (149)
58 2xot_A Amphoterin-induced prot 99.7 1.7E-16 6E-21 117.4 9.7 125 1-141 41-178 (361)
59 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 107.0 10.1 135 1-156 46-191 (197)
60 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 112.0 8.0 155 1-156 33-215 (239)
61 3o6n_A APL1; leucine-rich repe 99.7 2.5E-16 8.4E-21 117.5 10.2 60 97-156 243-305 (390)
62 2xwt_C Thyrotropin receptor; s 99.7 6.1E-17 2.1E-21 113.4 6.4 154 1-156 57-236 (239)
63 2z7x_B TOLL-like receptor 1, v 99.7 3.3E-16 1.1E-20 120.6 11.0 135 2-156 327-478 (520)
64 1wwl_A Monocyte differentiatio 99.7 3.5E-17 1.2E-21 118.9 5.0 154 1-156 97-284 (312)
65 1w8a_A SLIT protein; signaling 99.7 5E-16 1.7E-20 105.5 10.2 123 2-143 11-143 (192)
66 1w8a_A SLIT protein; signaling 99.7 3.3E-16 1.1E-20 106.4 9.3 103 1-119 31-143 (192)
67 1xku_A Decorin; proteoglycan, 99.7 5.2E-16 1.8E-20 113.3 11.0 141 1-142 123-279 (330)
68 1ziw_A TOLL-like receptor 3; i 99.7 5.1E-16 1.8E-20 123.0 11.4 62 93-154 237-304 (680)
69 3o6n_A APL1; leucine-rich repe 99.7 6.3E-16 2.2E-20 115.3 11.0 123 1-140 47-179 (390)
70 1ziw_A TOLL-like receptor 3; i 99.7 1.8E-16 6.2E-21 125.6 8.4 125 1-141 27-160 (680)
71 3oja_B Anopheles plasmodium-re 99.7 6.1E-16 2.1E-20 121.3 11.2 123 1-140 53-185 (597)
72 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-16 1.9E-20 125.8 11.0 156 1-156 26-214 (844)
73 2ft3_A Biglycan; proteoglycan, 99.7 5.9E-16 2E-20 113.2 10.0 139 1-143 104-281 (332)
74 2o6s_A Variable lymphocyte rec 99.7 2.6E-15 8.8E-20 103.0 12.4 136 2-156 10-158 (208)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.1E-16 3.1E-20 119.4 11.1 136 1-156 355-507 (562)
76 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.9E-20 112.5 8.0 153 1-156 119-304 (310)
77 2z80_A TOLL-like receptor 2, v 99.6 2.2E-16 7.6E-21 116.3 6.0 37 119-156 270-311 (353)
78 1dce_A Protein (RAB geranylger 99.6 2E-15 6.9E-20 117.8 11.4 114 1-152 443-566 (567)
79 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-15 3.9E-20 123.9 10.3 145 1-145 50-223 (844)
80 4fmz_A Internalin; leucine ric 99.6 7.6E-16 2.6E-20 113.0 8.0 150 1-156 179-343 (347)
81 2wfh_A SLIT homolog 2 protein 99.6 3.8E-15 1.3E-19 101.4 10.7 118 2-139 13-139 (193)
82 1h6u_A Internalin H; cell adhe 99.6 1.5E-15 5E-20 110.3 9.1 41 98-140 169-209 (308)
83 4ezg_A Putative uncharacterize 99.6 3.2E-15 1.1E-19 101.8 10.1 118 1-140 68-195 (197)
84 3oja_A Leucine-rich immune mol 99.6 1.7E-15 5.8E-20 116.3 9.5 134 1-139 101-250 (487)
85 1h6u_A Internalin H; cell adhe 99.6 9.8E-16 3.3E-20 111.2 7.7 148 1-156 43-205 (308)
86 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.4E-20 100.4 9.2 123 2-143 10-141 (177)
87 3o53_A Protein LRIM1, AGAP0063 99.6 2.4E-15 8.1E-20 109.5 9.4 134 1-139 101-250 (317)
88 1xeu_A Internalin C; cellular 99.6 5.4E-15 1.8E-19 105.1 11.1 116 1-140 43-164 (263)
89 1h6t_A Internalin B; cell adhe 99.6 1.8E-15 6.2E-20 109.0 8.0 145 1-154 48-208 (291)
90 2z7x_B TOLL-like receptor 1, v 99.6 3.8E-15 1.3E-19 114.6 10.2 123 1-141 350-483 (520)
91 2z81_A CD282 antigen, TOLL-lik 99.6 6.6E-16 2.2E-20 119.5 5.3 140 1-141 52-211 (549)
92 2xot_A Amphoterin-induced prot 99.6 4.3E-15 1.5E-19 110.0 9.1 122 1-139 66-202 (361)
93 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.7E-19 98.6 10.8 109 29-156 18-136 (193)
94 4g8a_A TOLL-like receptor 4; l 99.6 1.1E-14 3.9E-19 113.7 10.9 116 41-156 441-577 (635)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.2E-15 3.1E-19 113.7 10.3 118 2-138 55-181 (562)
96 1m9s_A Internalin B; cell inva 99.6 1.5E-14 5.3E-19 113.6 10.8 132 1-140 67-211 (605)
97 3g39_A Variable lymphocyte rec 99.6 2.4E-14 8.4E-19 95.4 9.9 104 2-141 12-117 (170)
98 1jl5_A Outer protein YOPM; leu 99.6 2.5E-15 8.6E-20 114.5 5.5 149 1-155 13-182 (454)
99 2o6r_A Variable lymphocyte rec 99.6 5.1E-14 1.7E-18 94.2 11.2 109 29-156 15-134 (177)
100 1a9n_A U2A', U2A'; complex (nu 99.6 2.7E-14 9.3E-19 95.5 9.7 118 1-139 21-153 (176)
101 1o6v_A Internalin A; bacterial 99.6 1.6E-14 5.5E-19 110.1 9.6 55 98-154 327-383 (466)
102 4b8c_D Glucose-repressible alc 99.5 9.3E-15 3.2E-19 117.0 8.1 109 16-144 217-334 (727)
103 1o6v_A Internalin A; bacterial 99.5 1.7E-14 5.9E-19 109.9 8.6 146 1-154 70-229 (466)
104 2r9u_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 94.2 9.8 102 2-140 15-119 (174)
105 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.6E-19 94.4 6.3 100 22-156 16-123 (149)
106 2ast_B S-phase kinase-associat 99.5 1.4E-15 4.9E-20 111.0 1.7 155 1-155 95-281 (336)
107 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.8E-19 103.2 8.0 132 1-140 70-214 (291)
108 1m9s_A Internalin B; cell inva 99.5 5.5E-14 1.9E-18 110.5 10.2 147 1-156 45-207 (605)
109 1dce_A Protein (RAB geranylger 99.5 6.4E-17 2.2E-21 126.3 -6.7 152 1-156 351-543 (567)
110 4fmz_A Internalin; leucine ric 99.5 2.5E-14 8.6E-19 104.9 7.3 133 1-139 201-346 (347)
111 3bz5_A Internalin-J, INLJ; leu 99.5 1.5E-13 5.2E-18 104.7 11.1 130 1-143 87-250 (457)
112 1jl5_A Outer protein YOPM; leu 99.5 1.7E-13 5.7E-18 104.4 11.0 109 23-140 131-251 (454)
113 3bz5_A Internalin-J, INLJ; leu 99.5 3.4E-13 1.2E-17 102.8 12.0 144 1-156 44-201 (457)
114 1xeu_A Internalin C; cellular 99.5 1.6E-13 5.6E-18 97.4 9.7 116 1-141 65-187 (263)
115 2ca6_A RAN GTPase-activating p 99.5 7.8E-16 2.7E-20 114.7 -2.6 140 1-140 62-258 (386)
116 2ca6_A RAN GTPase-activating p 99.5 2.2E-15 7.4E-20 112.3 -0.4 47 94-140 236-288 (386)
117 1ds9_A Outer arm dynein; leuci 99.5 3.9E-16 1.4E-20 106.4 -4.1 122 2-144 21-158 (198)
118 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 91.9 7.7 120 21-156 22-157 (168)
119 3goz_A Leucine-rich repeat-con 99.5 5.9E-15 2E-19 109.2 1.2 140 1-140 24-210 (362)
120 2ast_B S-phase kinase-associat 99.5 2.2E-14 7.4E-19 104.7 3.6 136 1-136 120-282 (336)
121 3cvr_A Invasion plasmid antige 99.5 2.8E-13 9.5E-18 105.8 9.6 38 105-143 210-247 (571)
122 4ay9_X Follicle-stimulating ho 99.5 2E-13 7E-18 100.5 8.2 76 1-76 32-118 (350)
123 4b8c_D Glucose-repressible alc 99.4 1.5E-13 5E-18 110.1 7.7 134 2-156 176-326 (727)
124 3cvr_A Invasion plasmid antige 99.4 2.6E-13 9E-18 105.9 7.9 122 1-156 102-240 (571)
125 3goz_A Leucine-rich repeat-con 99.4 2.5E-14 8.4E-19 105.9 1.3 141 1-141 53-240 (362)
126 2ifg_A High affinity nerve gro 99.4 1.5E-12 5.1E-17 95.6 9.7 101 3-139 12-116 (347)
127 4ay9_X Follicle-stimulating ho 99.4 5.5E-13 1.9E-17 98.2 5.9 151 1-152 56-229 (350)
128 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.7E-17 87.2 6.8 118 18-156 14-150 (176)
129 3g06_A SSPH2 (leucine-rich rep 99.3 3.9E-12 1.3E-16 100.2 8.7 44 100-144 259-302 (622)
130 1z7x_W Ribonuclease inhibitor; 99.3 9.2E-14 3.1E-18 105.3 -1.4 58 1-58 201-269 (461)
131 1ds9_A Outer arm dynein; leuci 99.3 6.6E-14 2.2E-18 95.4 -2.4 117 1-139 50-185 (198)
132 3g06_A SSPH2 (leucine-rich rep 99.3 1.9E-11 6.3E-16 96.4 10.8 50 2-58 43-94 (622)
133 1z7x_W Ribonuclease inhibitor; 99.3 6.5E-13 2.2E-17 100.6 1.2 141 1-141 229-413 (461)
134 3g39_A Variable lymphocyte rec 99.2 2.4E-11 8.1E-16 80.9 7.6 84 1-117 32-117 (170)
135 2r9u_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 80.3 7.5 83 1-117 35-120 (174)
136 2ifg_A High affinity nerve gro 99.2 9.5E-11 3.3E-15 85.9 8.7 90 32-156 20-113 (347)
137 3un9_A NLR family member X1; l 99.1 4.3E-12 1.5E-16 94.4 -2.5 139 1-139 74-252 (372)
138 3sb4_A Hypothetical leucine ri 99.0 6.2E-10 2.1E-14 81.2 7.3 57 1-57 51-136 (329)
139 3un9_A NLR family member X1; l 99.0 7.9E-11 2.7E-15 87.6 0.3 125 1-125 103-262 (372)
140 3ogk_B Coronatine-insensitive 98.8 5.3E-10 1.8E-14 87.1 -0.9 48 94-141 480-528 (592)
141 3ogk_B Coronatine-insensitive 98.7 8.8E-10 3E-14 85.8 -1.1 134 1-134 140-326 (592)
142 2p1m_B Transport inhibitor res 98.6 6.1E-09 2.1E-13 81.1 1.3 73 1-73 107-195 (594)
143 3rw6_A Nuclear RNA export fact 98.5 1.9E-07 6.6E-12 66.3 6.0 78 61-154 169-259 (267)
144 3sb4_A Hypothetical leucine ri 98.5 3.5E-07 1.2E-11 66.5 7.5 92 22-132 225-327 (329)
145 2p1m_B Transport inhibitor res 98.5 4.2E-09 1.4E-13 82.0 -3.0 56 101-156 455-516 (594)
146 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2E-12 65.2 0.9 111 17-139 30-164 (185)
147 3rw6_A Nuclear RNA export fact 98.4 1.7E-07 5.8E-12 66.6 2.7 73 42-132 167-257 (267)
148 1io0_A Tropomodulin; LRR prote 98.2 3E-07 1E-11 61.7 1.4 108 37-156 28-161 (185)
149 2ra8_A Uncharacterized protein 98.1 7E-07 2.4E-11 66.1 1.4 53 15-70 164-227 (362)
150 2ra8_A Uncharacterized protein 98.1 3.7E-06 1.3E-10 62.2 4.9 141 16-156 132-317 (362)
151 4fdw_A Leucine rich hypothetic 97.9 8.6E-05 2.9E-09 55.6 10.0 40 96-136 294-333 (401)
152 4fdw_A Leucine rich hypothetic 97.9 7.1E-05 2.4E-09 56.1 9.5 41 95-135 264-309 (401)
153 3e4g_A ATP synthase subunit S, 97.2 0.00016 5.4E-09 48.1 2.1 77 45-137 61-150 (176)
154 3e4g_A ATP synthase subunit S, 97.0 0.00015 5.2E-09 48.2 0.6 77 23-115 61-152 (176)
155 3rfe_A Platelet glycoprotein I 96.8 0.0018 6.2E-08 40.7 4.7 36 103-138 32-67 (130)
156 4gt6_A Cell surface protein; l 96.6 0.018 6.2E-07 42.6 9.6 104 16-138 258-369 (394)
157 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00032 1.1E-08 47.5 -0.2 18 98-115 94-111 (197)
158 4fs7_A Uncharacterized protein 96.3 0.011 3.8E-07 43.8 6.7 39 96-135 337-375 (394)
159 4h09_A Hypothetical leucine ri 96.3 0.016 5.5E-07 42.5 7.6 103 16-135 233-342 (379)
160 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0028 9.5E-08 42.8 1.0 90 38-139 63-170 (197)
161 3rfe_A Platelet glycoprotein I 95.6 0.017 5.9E-07 36.1 4.2 53 3-57 12-67 (130)
162 4gt6_A Cell surface protein; l 95.3 0.044 1.5E-06 40.5 6.2 102 16-138 281-390 (394)
163 4h09_A Hypothetical leucine ri 95.1 0.25 8.4E-06 36.1 9.8 102 17-136 211-320 (379)
164 4fs7_A Uncharacterized protein 95.1 0.035 1.2E-06 41.0 5.3 94 17-130 291-392 (394)
165 2lz0_A Uncharacterized protein 48.3 26 0.00089 20.3 3.8 41 95-136 13-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1e-22 Score=163.70 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=41.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
|++|++++|.+++.+|..+..+++|++| .+|.+.+.+|..++.+++|++|++++|.+.+.+| +++.+++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 3455666666665555555555555555 5555555555555555555555555555554443 445555555
Q ss_pred cccc
Q 039394 72 VQKK 75 (157)
Q Consensus 72 n~l~ 75 (157)
|.+.
T Consensus 548 N~l~ 551 (768)
T 3rgz_A 548 NLFN 551 (768)
T ss_dssp SEEE
T ss_pred CccC
Confidence 5443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=9.8e-22 Score=143.13 Aligned_cols=155 Identities=24% Similarity=0.342 Sum_probs=97.3
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCC-CCCEEEccCCcceeecc------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVR-PVQVLDISYSSILGDII------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~------~l~~l~l~~ 71 (157)
|++|++++|.+++.+|..+..+++|++| ..|.+.+.+|..+..++ +|++|++++|.+++..| .++.|++++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~ 206 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcC
Confidence 3445555555555555555555555555 44555545555555554 55555555555554433 355555555
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.+.. .+..+..++.+ +.+..|. +..+++|++|++++|++.+.+|..+..+++|+.|++++|.++|.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 5554332 23333344433 3333443 6778899999999999988999999999999999999999999999
Q ss_pred CC---CCcccccCCCC
Q 039394 144 SG---TKLQTLDASSY 156 (157)
Q Consensus 144 ~~---~~l~~l~~~~~ 156 (157)
.. +.++.++++.+
T Consensus 286 ~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSTTGGGSCGGGTCSS
T ss_pred CCccccccChHHhcCC
Confidence 87 55666666654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=8.9e-22 Score=158.22 Aligned_cols=155 Identities=30% Similarity=0.460 Sum_probs=110.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII---------------- 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------------- 62 (157)
|++|++++|.+++.+|..+..+++|++| .+|.+.+.+|..++.+++|++|++++|.+.|.+|
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 5678888888888888888888888888 7788888888888888888888888887765443
Q ss_pred -------------------------------------------------------------eeeeeecccccccceE--E
Q 039394 63 -------------------------------------------------------------IVSMIDLQMVQKKNSI--A 79 (157)
Q Consensus 63 -------------------------------------------------------------~l~~l~l~~n~l~~~~--~ 79 (157)
+++.+++++|.+.+.. +
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 2455667777766544 4
Q ss_pred Eceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCCCCcccccC
Q 039394 80 IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSGTKLQTLDA 153 (157)
Q Consensus 80 ~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~l~~l~~ 153 (157)
+..+..++.+ +.+.+|..++.+++|+.||+++|++.|.+|..+..++.|++|++++|+++|.+|+...++.++.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 4444444444 6666777777777777777777777777777777777777777777777777777655555554
Q ss_pred CC
Q 039394 154 SS 155 (157)
Q Consensus 154 ~~ 155 (157)
.+
T Consensus 732 ~~ 733 (768)
T 3rgz_A 732 AK 733 (768)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.6e-21 Score=140.11 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=35.4
Q ss_pred cEEECcC-CccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 2 EYLDLSD-NQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 2 ~~L~L~~-n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
++|++++ |.+.+.+|..+..+++|++| ..|.+.+..|..+..+++|++|++++|.+.+.+| +++.|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 4444442 44444444445455555555 4444444444445555555555555554443222 444455555
Q ss_pred cccc
Q 039394 72 VQKK 75 (157)
Q Consensus 72 n~l~ 75 (157)
|.+.
T Consensus 159 N~l~ 162 (313)
T 1ogq_A 159 NRIS 162 (313)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 5444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2e-20 Score=137.12 Aligned_cols=152 Identities=19% Similarity=0.289 Sum_probs=70.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee----------------cc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD----------------II 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~----------------~~ 62 (157)
|++|++++|.++ .+|..+..+++|++| ..|.+. .+|..+..+++|++|++++|.+.+. ++
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 344555555555 445555555555555 444444 4444555555555555555433221 22
Q ss_pred eeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394 63 IVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 63 ~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~ 135 (157)
+++.|++++|.+...+ .+..+..++++ +. .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++
T Consensus 184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 3444555555444332 22333333322 11 2333444455555555555555555555555555555555555
Q ss_pred CcceecCCCC----CCcccccCCC
Q 039394 136 NKLSGKIPSG----TKLQTLDASS 155 (157)
Q Consensus 136 N~l~~~~p~~----~~l~~l~~~~ 155 (157)
|.+.+.+|.. +.++.|+++.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCchhhcchhhhcCCCCCEEeCCC
Confidence 5544444443 4444444443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.1e-20 Score=138.49 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=130.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcC---------CCCCCEEEccCCcceeecc-------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCY---------VRPVQVLDISYSSILGDII------- 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~---------l~~L~~L~l~~n~~~~~~~------- 62 (157)
|++|++++|.++ .+|..+..+++|++| ..|...+.+|..+.. +++|++|++++|.++ .+|
T Consensus 129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 689999999999 889999999999999 677777788887765 999999999999887 443
Q ss_pred eeeeeecccccccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394 63 IVSMIDLQMVQKKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 63 ~l~~l~l~~n~l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~ 135 (157)
+++.|++++|.+.+.+ .+..+..++++ +.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus 207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 8899999999999876 56666666655 6668899999999999999999999999999999999999999999
Q ss_pred CcceecCCCC----CCcccccCC
Q 039394 136 NKLSGKIPSG----TKLQTLDAS 154 (157)
Q Consensus 136 N~l~~~~p~~----~~l~~l~~~ 154 (157)
|++.+.+|.. ++++.+++.
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCchhhccHHHhhccCceEEeCC
Confidence 9999999987 666666554
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=5.8e-19 Score=124.65 Aligned_cols=140 Identities=24% Similarity=0.165 Sum_probs=101.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
++.|++++|.+++..+..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence 4678888888887777778888888888 77888877777788888888888888887643 23788888888
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK 147 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~ 147 (157)
|.+.+. .+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+.. ++
T Consensus 117 N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 117 NQLKSL----------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp SCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CcCCCc----------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 888742 2333566777777777777777555556777777777777777777555433 56
Q ss_pred cccccCCCC
Q 039394 148 LQTLDASSY 156 (157)
Q Consensus 148 l~~l~~~~~ 156 (157)
++.++++.+
T Consensus 181 L~~L~l~~N 189 (251)
T 3m19_A 181 LQTITLFGN 189 (251)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeeCC
Confidence 666666654
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=5.4e-19 Score=126.79 Aligned_cols=154 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ceee-------cceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-ILGD-------IIIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~-------~~~l~~l~l~ 70 (157)
|++|++++|.+++..+..+..+++|++| ..|.+.+..|..+..+++|++|++++|. +... +++++.|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 4566666666665555556666666666 5566665556666666666666666665 4322 1255666666
Q ss_pred cccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394 71 MVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI 142 (157)
Q Consensus 71 ~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 142 (157)
+|.+.+.. .+..+..++++ +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 66655443 23333333333 22222333445555555555555554433334555555555555555555444
Q ss_pred CCC----CCcccccCC
Q 039394 143 PSG----TKLQTLDAS 154 (157)
Q Consensus 143 p~~----~~l~~l~~~ 154 (157)
|.. +.++.|+++
T Consensus 194 ~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred HhHccCcccccEeeCC
Confidence 433 344444444
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.5e-19 Score=128.54 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=122.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--cccc-ceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-INGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~ 70 (157)
|++|++++|.+++..|..+..+++|++| ..|. +....|..+..+++|++|++++|.+++.. ++++.|+++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 5789999999987778888889999999 6665 66555778888999999999999887543 378888999
Q ss_pred cccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394 71 MVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI 142 (157)
Q Consensus 71 ~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 142 (157)
+|.+.+.. .+..+..++++ +.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 99888765 35555555555 44344456888899999999999998888889999999999999999988754
Q ss_pred CCC----CCcccccCCCC
Q 039394 143 PSG----TKLQTLDASSY 156 (157)
Q Consensus 143 p~~----~~l~~l~~~~~ 156 (157)
+.. +.++.++++.+
T Consensus 218 ~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDN 235 (285)
T ss_dssp HHHHTTCTTCCEEECCSS
T ss_pred HHHcccCcccCEEeccCC
Confidence 432 77888888764
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=123.84 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=111.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
+++|++++|.+++..+..+..+++|++| ..|.+....+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 4678888888886656678888888888 67777755555567788888888888887632 23788888888
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.... .+..+..++++ +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 8887665 34455555554 333334457778888888888888886666678888888888888888876544
Q ss_pred CC----CCcccccCCCC
Q 039394 144 SG----TKLQTLDASSY 156 (157)
Q Consensus 144 ~~----~~l~~l~~~~~ 156 (157)
.. +.++.++++.+
T Consensus 199 ~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhccccCCCEEEecCC
Confidence 32 66777777654
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.2e-18 Score=124.65 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=110.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~ 70 (157)
|++|++++|.+. .+|..+..+++|++| ..|.+.+..+ ..+..+++|++|++++|.+.+.. ++++.|+++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 456666666666 455566677777777 5666664433 46777778888888887776433 377788888
Q ss_pred cccccc-e-E-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 71 MVQKKN-S-I-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 71 ~n~l~~-~-~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
+|.+.+ . + .+..+..++++ +.+..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 887765 2 2 45555555555 5555677788888999999999998877777888889999999999999887
Q ss_pred CCCC-----CCcccccCCCC
Q 039394 142 IPSG-----TKLQTLDASSY 156 (157)
Q Consensus 142 ~p~~-----~~l~~l~~~~~ 156 (157)
.|.. ..++.++++.+
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTC
T ss_pred CHHHHHhhhccCCEEEccCC
Confidence 7755 36778888764
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.6e-18 Score=131.90 Aligned_cols=154 Identities=19% Similarity=0.108 Sum_probs=112.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--ceeeeeecccccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--IIVSMIDLQMVQKKN 76 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~l~~l~l~~n~l~~ 76 (157)
|++|++++|.+++..|..+..+++|++| .+|.+.+..| +..+++|++|++++|.+++.. ++++.|++++|.+.+
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence 5789999999998888899999999999 8888887655 889999999999999987543 478888888888877
Q ss_pred eE--EEc---eeeeeccccccccccccccccCCCEEecCCCccCCCCChhhh-cCCCCCeEEccCCcceecCCCC--CCc
Q 039394 77 SI--AII---NVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGIS-QLGLLGVLSLSNNKLSGKIPSG--TKL 148 (157)
Q Consensus 77 ~~--~~~---~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~--~~l 148 (157)
.. .+. .+......+.+..|..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++..+.. +.+
T Consensus 114 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L 193 (487)
T 3oja_A 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193 (487)
T ss_dssp EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCC
Confidence 65 221 111111225555666777777888888888887776666665 5777777777777776653333 566
Q ss_pred ccccCCCC
Q 039394 149 QTLDASSY 156 (157)
Q Consensus 149 ~~l~~~~~ 156 (157)
+.|+++.+
T Consensus 194 ~~L~Ls~N 201 (487)
T 3oja_A 194 KTLDLSSN 201 (487)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666553
No 13
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=2.2e-18 Score=123.11 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=105.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
|++|++++|.+++..+..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++.. ++++.|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 5788999999987666688888889988 778888777778888999999999999886543 2788888888
Q ss_pred ccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCCCCChhhhcCCCCC----eEEccCCcc
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLG----VLSLSNNKL 138 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~----~L~ls~N~l 138 (157)
|.+.+.. .+..+..++++ +.. .+|..+..+++|++|++++|++.+..+..+..++.++ .+++++|.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 8887654 34444444444 332 3577777778888888888877765555555444444 555555555
Q ss_pred eecCCCC---CCcccccCCC
Q 039394 139 SGKIPSG---TKLQTLDASS 155 (157)
Q Consensus 139 ~~~~p~~---~~l~~l~~~~ 155 (157)
.+..+.. .+++.|+++.
T Consensus 190 ~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 190 NFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp CEECTTSSCSCCEEEEECCS
T ss_pred cccCccccCCCcccEEECCC
Confidence 5443333 3444444443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=4.7e-18 Score=129.13 Aligned_cols=156 Identities=21% Similarity=0.143 Sum_probs=101.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cc---------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------II--------- 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~--------- 62 (157)
|++|++++|.+++..+..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+++. ++
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 5677777777776666777777777777 66666655555677777777777777766521 11
Q ss_pred ----------------eeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCCh
Q 039394 63 ----------------IVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 63 ----------------~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 120 (157)
+++.|++++|.+.+...+..+..++++ +.+..|..+..+++|+.|++++|++.+..+.
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred CCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 445555555555544433333333333 4445566777777778888888877777777
Q ss_pred hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
.+..+++|+.|++++|.+++..+.. +.++.|+++.+
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 7777788888888888777544433 56666766654
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.8e-18 Score=117.81 Aligned_cols=124 Identities=22% Similarity=0.187 Sum_probs=92.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.+++..|..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence 4677888888887667777777888877 67777655555567788888888888877632 23777778888
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
|.+. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus 122 N~l~-----------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 122 NKLT-----------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCC-----------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred Cccc-----------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 8776 5777788888888888888888866666778888888888888887654
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=128.66 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=96.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee------------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------------------ 60 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------------------ 60 (157)
|++|+|++|.+++..+..|..+++|++| ..|.+.+..+..+..+++|++|++++|.+...
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 4667777777775555666667777777 56666655455566666677777766665421
Q ss_pred --------------cceeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCCh
Q 039394 61 --------------IIIVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 61 --------------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 120 (157)
+++|+.|++++|.+...+.+..+..++++ +.+..|..+..+++|+.|++++|++.+..+.
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 11445555555555544433333333333 4444566677777777777777777766677
Q ss_pred hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
.+..+++|+.|++++|.+++..+.. +.++.++++.+
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 7777777777777777777544433 56666666543
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.4e-17 Score=118.83 Aligned_cols=137 Identities=23% Similarity=0.176 Sum_probs=72.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
|++|++++|.+++ + +.+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++.. ++++.|++++
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 3455555555553 2 244555555555 455555444444555555555555555554221 2555555555
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK 147 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~ 147 (157)
|.+.+. .+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|.. +.
T Consensus 143 n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 143 NQLQSL----------------PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp SCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CccCcc----------------CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 555432 3333455666666666666666555555556666666666666666544432 45
Q ss_pred cccccCCC
Q 039394 148 LQTLDASS 155 (157)
Q Consensus 148 l~~l~~~~ 155 (157)
++.++++.
T Consensus 207 L~~L~l~~ 214 (272)
T 3rfs_A 207 LQYIWLHD 214 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 55555544
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.8e-17 Score=115.07 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=59.8
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n 72 (157)
+.|++++|.+++..+..+..+++|++| .+|.+.+..|..|..+++|++|++++|.+++. +++++.|++++|
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 344555555543333344445555555 44444444444455555555555555544311 124444445554
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
.+.+ ..|..+..+++|++|++++|++.+..+..+..+++|+.+++++|++
T Consensus 115 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 115 KINC----------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCE----------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 4442 2344455555555555555555544444555555555555555554
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=114.56 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=62.2
Q ss_pred EEECcCCccccccC-cchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccc
Q 039394 3 YLDLSDNQLSEEIP-HCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMV 72 (157)
Q Consensus 3 ~L~L~~n~l~~~~p-~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n 72 (157)
+|++++|.+++..+ ..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++.. ++++.|++++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 44555555543322 224445555555 444444444444555555555555555444221 14444555555
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.+.+ ..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.
T Consensus 116 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 116 RITC----------------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCC----------------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCe----------------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5442 23455556666666666666666555666666666666666666654
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=5.4e-18 Score=128.45 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=32.1
Q ss_pred CcEEECcCCccccccCcc--hhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcce
Q 039394 1 MEYLDLSDNQLSEEIPHC--SRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSIL 58 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~--~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~ 58 (157)
|++|++++|.+++.++.. +..+++|++| ..|.+.+..|.. +..+++|++|++++|.+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 455666666665433333 5556666666 555555444443 555666666666665554
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=5.5e-17 Score=112.58 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=114.7
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n 72 (157)
+.+++++++++ .+|..+. ++++.| .+|.+.+..+..+..+++|++|++++|.+++..| +++.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46788999988 6776554 678888 8889988777789999999999999999986533 8999999999
Q ss_pred cccceEEEceeeeecccccccccc-ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK 147 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~ 147 (157)
.+. .+|. .+..+++|++|++++|++.+..|..+..+++|+.|++++|.+.+..+.. +.
T Consensus 91 ~l~-----------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 91 KIT-----------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp CCC-----------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCC-----------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 998 4554 4688999999999999999888999999999999999999999776654 77
Q ss_pred cccccCCCC
Q 039394 148 LQTLDASSY 156 (157)
Q Consensus 148 l~~l~~~~~ 156 (157)
++.++++.+
T Consensus 154 L~~L~L~~N 162 (220)
T 2v9t_B 154 IQTMHLAQN 162 (220)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 888888765
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=128.42 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=117.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
+++|++++|.+++..+..|..+++|++| ..|.+.+..|..+..+++|++|++++|.+++. +++|+.|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 5788999999997778888899999999 78888887788899999999999999887632 23788899999
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.... .+..+..++++ +.+..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 9887654 44445555544 444556678888888888888888876666678888888888888888776555
Q ss_pred CC----CCcccccCC
Q 039394 144 SG----TKLQTLDAS 154 (157)
Q Consensus 144 ~~----~~l~~l~~~ 154 (157)
.. +.++.|+++
T Consensus 194 ~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 194 YSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCSCSCTTCCEEEEE
T ss_pred hhcccCcccceeeCC
Confidence 33 555555554
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=2.2e-17 Score=116.48 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=110.0
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.+++..+..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 6899999999998888889999999999 88999877778889999999999999998743 33889999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
|.+.+ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+.
T Consensus 141 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 141 NQLQS----------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCc----------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99983 2344688999999999999999987788899999999999999999765
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=2.9e-18 Score=135.36 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=127.9
Q ss_pred CcEEECcCCccccc-----------------cCcchh--cccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ce
Q 039394 1 MEYLDLSDNQLSEE-----------------IPHCSR--YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-IL 58 (157)
Q Consensus 1 L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~ 58 (157)
|++|++++|.+++. +|+.++ .+++|++| ..|.+.+.+|+.++.+++|++|++++|+ ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 68999999999985 999988 99999999 8888999999999999999999999998 87
Q ss_pred e-ec-------------ceeeeeecccccccceEE---Eceeeeeccc------cccccccccccccCCCEEecCCCccC
Q 039394 59 G-DI-------------IIVSMIDLQMVQKKNSIA---IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 59 ~-~~-------------~~l~~l~l~~n~l~~~~~---~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~ 115 (157)
+ .+ ++++.|++++|.+...+. +..+..++++ +.+.+| .+..+++|++|++++|++.
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 6 33 478999999999986543 5555555555 666788 7888888999999999888
Q ss_pred CCCChhhhcCCC-CCeEEccCCcceecCCCC------CCcccccCCCC
Q 039394 116 GKIPEGISQLGL-LGVLSLSNNKLSGKIPSG------TKLQTLDASSY 156 (157)
Q Consensus 116 ~~~p~~~~~l~~-L~~L~ls~N~l~~~~p~~------~~l~~l~~~~~ 156 (157)
.+|..+..+++ |+.|++++|.++ .+|.. .+++.|+++.+
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 78888888888 999999999988 66765 25778887764
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.3e-17 Score=118.94 Aligned_cols=136 Identities=19% Similarity=0.154 Sum_probs=62.4
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeeeccccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMIDLQMVQ 73 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~l~~n~ 73 (157)
++|++++|.+++..+..+..+++|++| ..|.+.+..+. ..+++|++|++++|.++. .+++++.|++++|.
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc
Confidence 445555555554444555555555555 44444432221 455555555555555441 12255555555555
Q ss_pred ccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 74 KKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 74 l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+.+.. .+..+..++++ +....+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55433 22333333332 22222233344445555555555544333333444555555555555544
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.2e-17 Score=126.83 Aligned_cols=155 Identities=19% Similarity=0.142 Sum_probs=117.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
+++|++++|.+++..|..|..+++|++| ..|.+.+..+..+..+++|++|++++|.+++. +++|+.|++++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 5789999999998888999999999999 88999988889999999999999999998743 34899999999
Q ss_pred ccccceE--EEceeeeeccc-------ccc-----------------------ccccccccccCCCEEecCCCccCCCCC
Q 039394 72 VQKKNSI--AIINVVVVGEL-------FKR-----------------------PIPTKIDQLTMLHALDLSRNQPIGKIP 119 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~-------~~~-----------------------~~p~~~~~l~~L~~L~l~~N~l~~~~p 119 (157)
|.+.... .+..+..++.+ +.. .+| .+..+++|+.|++++|.+.+..|
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECG
T ss_pred CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCc
Confidence 9988654 23333333332 000 122 24556667777777777776677
Q ss_pred hhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 120 EGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 120 ~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
..+..+++|+.|++++|.+.+..|.. +.++.||++.+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 77888888888888888887776654 67777777754
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=2.4e-17 Score=118.85 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=124.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
++++++++++++ .+|..+. ++++.| .+|.+.+..+..+..+++|++|++++|.+++ .+++++.|++++|.
T Consensus 12 l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCc
Confidence 578999999998 6676554 678888 8899988888899999999999999999874 34489999999999
Q ss_pred ccceE-EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC-
Q 039394 74 KKNSI-AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG- 145 (157)
Q Consensus 74 l~~~~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~- 145 (157)
+...+ .+..+..++++ +.+..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 98776 45555555555 55555677899999999999999999777778899999999999999998654433
Q ss_pred ---CCcccccCCCC
Q 039394 146 ---TKLQTLDASSY 156 (157)
Q Consensus 146 ---~~l~~l~~~~~ 156 (157)
++++.|+++.+
T Consensus 169 ~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 169 NGLENLDTLLLQEN 182 (290)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCcCCCCEEECCCC
Confidence 77888887764
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=125.38 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=109.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
++.|+|++|++++..+..+..+++|++| ..|.+.+..+..|..+++|++|++++|.+++. +++|+.|++++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 5789999999998888899999999999 88889888888999999999999999988743 23899999999
Q ss_pred ccccceE--EEceeeeeccc-------cccccccc----------------------cccccCCCEEecCCCccCCCCCh
Q 039394 72 VQKKNSI--AIINVVVVGEL-------FKRPIPTK----------------------IDQLTMLHALDLSRNQPIGKIPE 120 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~-------~~~~~p~~----------------------~~~l~~L~~L~l~~N~l~~~~p~ 120 (157)
|.+.... .+..+..++++ +....+.. +..+++|+.|++++|++.+..|.
T Consensus 146 N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTT
T ss_pred CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChh
Confidence 9988654 33444333333 11111122 34445555666666666555566
Q ss_pred hhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 121 GISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 121 ~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
.+..+++|+.|++++|.+.+..+.. ++|+.||++.+
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 6666666666666666666655543 56666666554
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=3.6e-17 Score=116.70 Aligned_cols=128 Identities=21% Similarity=0.163 Sum_probs=110.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
|++|++++|.+++..+..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+++.. ++++.|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 6899999999997777778999999999 888888777777899999999999999987432 3899999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
|.+.+ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|.
T Consensus 167 n~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 167 NQLQS----------------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCc----------------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 99974 2445578899999999999999988888889999999999999998876653
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1e-17 Score=132.22 Aligned_cols=92 Identities=20% Similarity=0.334 Sum_probs=51.8
Q ss_pred eeeeeecccccccceE-EEc--eeeeeccc------cccccccccccccCCCEEec------CCCccCCCCChhhhcCCC
Q 039394 63 IVSMIDLQMVQKKNSI-AII--NVVVVGEL------FKRPIPTKIDQLTMLHALDL------SRNQPIGKIPEGISQLGL 127 (157)
Q Consensus 63 ~l~~l~l~~n~l~~~~-~~~--~~~~l~~~------~~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~ 127 (157)
+++.|++++|.+...+ .+. .+..++++ +.+ +|..+..+++|+.|++ ++|++.+.+|..+..+++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 3455555555555433 222 33333333 333 5666666666666666 345556666666666666
Q ss_pred CCeEEccCCcceecCCCC--CCcccccCCCC
Q 039394 128 LGVLSLSNNKLSGKIPSG--TKLQTLDASSY 156 (157)
Q Consensus 128 L~~L~ls~N~l~~~~p~~--~~l~~l~~~~~ 156 (157)
|+.|++++|.+ +.+|.. +.++.||++.+
T Consensus 568 L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N 597 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEKITPNISVLDIKDN 597 (636)
T ss_dssp CCEEECCSSCC-CBCCSCCCTTCCEEECCSC
T ss_pred CCEEECCCCcC-CccCHhHhCcCCEEECcCC
Confidence 66666666666 455554 56666666554
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=5.5e-17 Score=111.35 Aligned_cols=127 Identities=21% Similarity=0.171 Sum_probs=95.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.+++..+..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 4678888888886556667788888888 67777765555677888888888888877632 23778888888
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.+ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|
T Consensus 110 N~l~~----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 110 NQLQS----------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SCCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CcCcc----------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 88763 234446788889999999998886666668888889999999888776655
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.6e-17 Score=121.03 Aligned_cols=152 Identities=19% Similarity=0.095 Sum_probs=102.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--ceeeeeecccccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--IIVSMIDLQMVQKKN 76 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~l~~l~l~~n~l~~ 76 (157)
|++|++++|.+++..|..+..+++|++| ..|.+.+..+ +..+++|++|++++|.+++.. ++++.|++++|.+.+
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~ 113 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence 5789999999998777889999999999 8888886554 889999999999999987532 477788888887776
Q ss_pred eEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCcceecCCCC--CC
Q 039394 77 SIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPSG--TK 147 (157)
Q Consensus 77 ~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~--~~ 147 (157)
... ..+..++++ +.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+.. ++
T Consensus 114 ~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~ 192 (317)
T 3o53_A 114 VSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192 (317)
T ss_dssp EEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTT
T ss_pred cCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccccccc
Confidence 541 111222222 444445556666667777777776665555544 35566666666666665442221 55
Q ss_pred cccccCCC
Q 039394 148 LQTLDASS 155 (157)
Q Consensus 148 l~~l~~~~ 155 (157)
++.|+++.
T Consensus 193 L~~L~Ls~ 200 (317)
T 3o53_A 193 LKTLDLSS 200 (317)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 55555554
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=6.6e-18 Score=132.15 Aligned_cols=128 Identities=19% Similarity=0.068 Sum_probs=93.0
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
+++|++++|.+++..+..+..+++|++| .+|.+.+..|..|..+++|++|++++|.+++..| +|+.|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 5788999999987777788899999999 7888888778888999999999999998875533 888999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcceecCCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
|.+.+. .+..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+..|.
T Consensus 114 n~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 114 TKLASL----------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp SCCCCS----------------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred Cccccc----------------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 988743 22445555566666666665553 3455556666666666666655554444
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=5.1e-17 Score=118.71 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=56.0
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~ 73 (157)
+++|++++|.+++..+..+..+++|++| ..|.+.+..|..+..+++|++|++++|.++. +| +++.|++++|.
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE 132 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCc
Confidence 4678888888886666678888888888 7778877778888888888888888887752 22 55556666555
Q ss_pred ccce
Q 039394 74 KKNS 77 (157)
Q Consensus 74 l~~~ 77 (157)
+.+.
T Consensus 133 l~~~ 136 (330)
T 1xku_A 133 ITKV 136 (330)
T ss_dssp CCBB
T ss_pred cccc
Confidence 5543
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=111.11 Aligned_cols=136 Identities=21% Similarity=0.155 Sum_probs=113.9
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
+.+++++|.++ .+|..+. ..+++| ..|.+.+..+ ..+..+++|++|++++|.+++..+ +++.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47899999998 6776654 346777 8888887644 458899999999999999875433 899999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TK 147 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~ 147 (157)
|.+.+ ..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..|.. ++
T Consensus 91 N~l~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 91 NRLEN----------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp SCCCC----------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred CccCc----------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence 99974 34556889999999999999999888999999999999999999999887766 77
Q ss_pred cccccCCCC
Q 039394 148 LQTLDASSY 156 (157)
Q Consensus 148 l~~l~~~~~ 156 (157)
++.|+++.+
T Consensus 155 L~~L~L~~N 163 (220)
T 2v70_A 155 LSTLNLLAN 163 (220)
T ss_dssp CCEEECCSC
T ss_pred CCEEEecCc
Confidence 888888765
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=1.9e-17 Score=129.49 Aligned_cols=155 Identities=17% Similarity=0.069 Sum_probs=123.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
+++|++++|.+++..|..+..+++|++| ..|.+.+..|..|..+++|++|++++|.+.+..| +++.|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 5789999999998888899999999999 7888888889999999999999999999875543 889999999
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCC--eEEccCCcceec
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLG--VLSLSNNKLSGK 141 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~--~L~ls~N~l~~~ 141 (157)
|.+.+.. .+..+..++++ +.+..+..+..+++|++|++++|.+.+..|..++.+++++ .+++++|.+.+.
T Consensus 115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 9998753 55666666665 3332223344488999999999998877788889999998 889999999887
Q ss_pred CCCC---CCcccccCCC
Q 039394 142 IPSG---TKLQTLDASS 155 (157)
Q Consensus 142 ~p~~---~~l~~l~~~~ 155 (157)
.|.. ..++.++++.
T Consensus 195 ~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CTTTTTTCEEEEEECTT
T ss_pred ChhHhhhccccccccCC
Confidence 7766 5566666554
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.4e-17 Score=130.29 Aligned_cols=153 Identities=19% Similarity=0.136 Sum_probs=88.5
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
++|++++|.++ .+|..+..+++|++| ..|.+.+..| ..+..+++|++|++++|.+.+..| +++.|++++
T Consensus 379 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 44555555544 234445555555555 4555554444 455566666666666666554332 566666666
Q ss_pred ccccce-E--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394 72 VQKKNS-I--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI 142 (157)
Q Consensus 72 n~l~~~-~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 142 (157)
|.+.+. . .+..+..++.+ +.+..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++ .+
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 536 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS 536 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence 666552 1 34444444444 44455666677777777777777777666777777777777777777766 34
Q ss_pred CCC----C-CcccccCCCC
Q 039394 143 PSG----T-KLQTLDASSY 156 (157)
Q Consensus 143 p~~----~-~l~~l~~~~~ 156 (157)
|.. + .++.++++.+
T Consensus 537 p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp ESCGGGSCTTCCEEECCSC
T ss_pred CHhHhhhcccCcEEEccCC
Confidence 443 2 3666666543
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=1.3e-17 Score=130.46 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=75.4
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCcc-CcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIR-LCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
++|++++|.+.+..|..+..+++|++| ..|.+.+..+.. +..+++|++|++++|.+.+. +++++.|++++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 344444444443334444444444444 334443332222 44444444444444444322 12455555555
Q ss_pred ccccceE-----EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 72 VQKKNSI-----AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 72 n~l~~~~-----~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
|.+.+.. .+..+..++.+ +.+..|..+..+++|++|++++|++.+..|+.+..++.+ .|++++|.+++
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 5554311 12223333333 334445556666666666666666666666666666666 66666666665
Q ss_pred cCCCC----CCcccccCCCC
Q 039394 141 KIPSG----TKLQTLDASSY 156 (157)
Q Consensus 141 ~~p~~----~~l~~l~~~~~ 156 (157)
..|.. +.++.++++.+
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTC
T ss_pred cCHhhcccCCCCCEEeCCCC
Confidence 55543 55566665543
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=5.4e-17 Score=122.96 Aligned_cols=129 Identities=18% Similarity=0.085 Sum_probs=107.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
|++|++++|.+.+.+|..+..+++|++| ..|.+.+..|..+..+++|++|++++|.+.+.. ++++.|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 5678888888888788888888888888 788888777888888888999999888886543 3788888888
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
|.+.+ ..|.++..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|..
T Consensus 357 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 357 NHIRA----------------LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp SCCCE----------------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred Ccccc----------------cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 88863 45778899999999999999998766677889999999999999999888754
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=9.5e-18 Score=121.32 Aligned_cols=156 Identities=22% Similarity=0.235 Sum_probs=82.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcc-------------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSI------------------- 57 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~------------------- 57 (157)
|++|++++|.++...+..+..+++|++| .+|.+.. ..+..+..+++|++|++++|.+
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECC
Confidence 4566666666663333335666666666 4554442 1133333444444444444444
Q ss_pred ----eee--------cceeeeeecccccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCC
Q 039394 58 ----LGD--------IIIVSMIDLQMVQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIG 116 (157)
Q Consensus 58 ----~~~--------~~~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~ 116 (157)
++. +++++.|++++|.+.+.. .+..+..++++ +.+ ..|..+..+++|++|++++|++.+
T Consensus 110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 321 114455555555444322 22233333333 222 355666667777777777777766
Q ss_pred CCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 117 KIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 117 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
..|..+..+++|+.|++++|.+.+..+.. +.++.||++.+
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 66666777777777777777766543322 56666666543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=4.8e-17 Score=118.98 Aligned_cols=58 Identities=28% Similarity=0.244 Sum_probs=43.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 58 (157)
|++|++++|.+++..|..+..+++|++| ..|.+.+..|..+..+++|++|++++|.++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 115 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC
Confidence 4677888888776666677777888877 677777666777777777777777777665
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=7e-17 Score=107.33 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=101.9
Q ss_pred CcEEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394 1 MEYLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~ 70 (157)
|++|++++|.++ +.+|..+..+++|++| ..|.+.+. ..+..+++|++|++++|.+.+.+| +++.|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 578999999998 7888888999999999 78888754 778999999999999999986443 88999999
Q ss_pred cccccceEEEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCC---hhhhcCCCCCeEEccCCcce
Q 039394 71 MVQKKNSIAIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIP---EGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~ls~N~l~ 139 (157)
+|.+.+ +| ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 104 ~N~l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKD-----------------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCS-----------------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCc-----------------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999873 44 678889999999999999886555 47889999999999999876
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=6.7e-17 Score=126.40 Aligned_cols=129 Identities=22% Similarity=0.126 Sum_probs=106.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
+++|||++|.+++..+.+|..+++|++| ..|.+.+..|+.|..+++|++|++++|++++.. ++|+.|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 5789999999997777889999999999 888898877888999999999999999987432 3889999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCC-CCChhhhcCCCCCeEEccCCcceecCCCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIG-KIPEGISQLGLLGVLSLSNNKLSGKIPSG 145 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 145 (157)
|.+.+ ..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..
T Consensus 134 N~l~~----------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 134 TNLAS----------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp SCCCC----------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CcCCC----------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 99873 233457888889999999998865 46778888888999999998888766544
No 44
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=120.53 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=18.8
Q ss_pred CcEEECcCCccccccCcch--hcccccccc--ccccce
Q 039394 1 MEYLDLSDNQLSEEIPHCS--RYWQSLKVL--KSNHIN 34 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L--~~n~~~ 34 (157)
|++|++++|.+.+..|..+ ..+++|++| .+|.+.
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc
Confidence 4556666666665555554 455555555 444444
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=126.34 Aligned_cols=143 Identities=18% Similarity=0.103 Sum_probs=98.3
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
|++|++++|.+++..|..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+.+..+ +|+.|++++
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 6788999999887778888888899988 7777776656667888889999998888765433 778888888
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.... .+..+..++++ +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 8877654 44444444444 333334446666677777777777665555556666666666666554443333
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.9e-17 Score=115.45 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=112.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.++...+..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 6789999999985555566888999999 77888876667788899999999999988643 33888999999
Q ss_pred ccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
|.+.+.. .+..+..++++ +....+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9888766 35555555555 4444555688899999999999999976677789999999999999997543
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=1.6e-17 Score=128.50 Aligned_cols=129 Identities=21% Similarity=0.167 Sum_probs=90.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
|++|++++|.+++..|..+..+++|++| ..|.+.+..|..+..+++|++|++++|.+++..+ +++.|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 5789999999998888889999999999 8888888888889999999999999998875433 889999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcceecCCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
|.+.+. ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..|.
T Consensus 108 n~l~~~---------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 108 NPYQTL---------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CCCSSS---------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred Cccccc---------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 998743 223344455555555555554333332 3444555555555555555544443
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=4.8e-17 Score=118.18 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=72.8
Q ss_pred CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----------ecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----------DII 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----------~~~ 62 (157)
|++|++++|.+++. |+.+..+ ++|++| .+|.+.+..|..+..+++|++|++++|++.+ .++
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 34555555555543 4445444 555555 5555555555566666666666666665432 223
Q ss_pred eeeeeecccccccceE-----EEceeeeeccc------cccccc-cccccccCCCEEecCCCccCCCCChhhhcCCCCCe
Q 039394 63 IVSMIDLQMVQKKNSI-----AIINVVVVGEL------FKRPIP-TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGV 130 (157)
Q Consensus 63 ~l~~l~l~~n~l~~~~-----~~~~~~~l~~~------~~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 130 (157)
+++.|++++|.+.+.. .+..+..++++ +.+..| ..+..+++|++|++++|++. .+|..+. ++|+.
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV 278 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence 5666666666665321 01111222222 222222 22333455555555555554 4444443 45555
Q ss_pred EEccCCcceecCCCC---CCcccccCCC
Q 039394 131 LSLSNNKLSGKIPSG---TKLQTLDASS 155 (157)
Q Consensus 131 L~ls~N~l~~~~p~~---~~l~~l~~~~ 155 (157)
|++++|.+++. |.. ++++.++++.
T Consensus 279 L~Ls~N~l~~~-p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 279 LDLSYNRLDRN-PSPDELPQVGNLSLKG 305 (312)
T ss_dssp EECCSSCCCSC-CCTTTSCEEEEEECTT
T ss_pred EECCCCCCCCC-hhHhhCCCCCEEeccC
Confidence 55555555543 222 4444555443
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.9e-17 Score=133.40 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=124.9
Q ss_pred CcEEECcCCcccc-----------------ccCcchh--cccccccc--ccccceeecCccCcCCCCCCEEEccCCc-ce
Q 039394 1 MEYLDLSDNQLSE-----------------EIPHCSR--YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-IL 58 (157)
Q Consensus 1 L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~ 58 (157)
|++|+|++|.+++ .+|+.++ .+++|++| ..|.+.+.+|..++.+++|++|++++|+ ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 6899999999998 3898877 99999999 7888899999999999999999999998 87
Q ss_pred e-ecc--------------eeeeeecccccccceEE---Eceeeeeccc------cccccccccccccCCCEEecCCCcc
Q 039394 59 G-DII--------------IVSMIDLQMVQKKNSIA---IINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQP 114 (157)
Q Consensus 59 ~-~~~--------------~l~~l~l~~n~l~~~~~---~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l 114 (157)
+ .+| +++.|++++|.+...+. +..+..++.+ +. .+| .+..+++|+.|++++|++
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc
Confidence 6 444 69999999999985544 5555555555 44 677 788888889999999988
Q ss_pred CCCCChhhhcCCC-CCeEEccCCcceecCCCC------CCcccccCCCC
Q 039394 115 IGKIPEGISQLGL-LGVLSLSNNKLSGKIPSG------TKLQTLDASSY 156 (157)
Q Consensus 115 ~~~~p~~~~~l~~-L~~L~ls~N~l~~~~p~~------~~l~~l~~~~~ 156 (157)
. .+|..+..+++ |+.|++++|.+. .+|.. ..++.|+++.+
T Consensus 608 ~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 8 88888888888 999999999888 66655 23777877764
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=120.80 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|++++..+..+..+++|++| .+|.+.+..|..+..+++|++|++++|.+++. +++++.|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence 5789999999986666688889999999 78888877788899999999999999988632 33888999999
Q ss_pred ccccceE---EEceeeeeccc-------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 72 VQKKNSI---AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 72 n~l~~~~---~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
|.+.+.. .+..+..++++ +....|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 134 n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 9887543 13333333333 1222234455555666666666666555555666666666666666655
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=126.58 Aligned_cols=145 Identities=21% Similarity=0.112 Sum_probs=101.8
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
+++|++++|.+++..+.+|..+++|++| .+|.+.+..+..|..+++|++|++++|.+++.. ++++.|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 5789999999997777889999999999 788888777888999999999999999887543 3889999999
Q ss_pred ccccceE--EEceeeeeccc------ccc-ccccccccccCCCEEecCCCccCCCCChhhhcCCCC----CeEEccCCcc
Q 039394 72 VQKKNSI--AIINVVVVGEL------FKR-PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL----GVLSLSNNKL 138 (157)
Q Consensus 72 n~l~~~~--~~~~~~~l~~~------~~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L----~~L~ls~N~l 138 (157)
|.+.+.. .+..+..++++ +.+ .+|..+..+++|++|++++|++.+..+..++.+++| ..+++++|.+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 9887543 23444444443 222 345556666666666666666655555555555555 5666666666
Q ss_pred eecCCCC
Q 039394 139 SGKIPSG 145 (157)
Q Consensus 139 ~~~~p~~ 145 (157)
.+..|..
T Consensus 190 ~~~~~~~ 196 (570)
T 2z63_A 190 NFIQPGA 196 (570)
T ss_dssp CEECTTT
T ss_pred eecCHHH
Confidence 5554443
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=6.5e-17 Score=115.40 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=79.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.+++..+..+..+++|++| .+|.+.+..+..+..+++|++|++++|.+.+. +++++.|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence 5677778877776556667777777777 66777766666677777777777777766532 22666777777
Q ss_pred ccccce--E-EEceeeeeccc------cccccccccccccCCC----EEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 72 VQKKNS--I-AIINVVVVGEL------FKRPIPTKIDQLTMLH----ALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 72 n~l~~~--~-~~~~~~~l~~~------~~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
|.+.+. + .+..+..++++ +.+..+..+..+..++ .+++++|.+.+..+..+. ..+|+.|++++|.+
T Consensus 134 n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l 212 (276)
T 2z62_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQL 212 (276)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCC
T ss_pred CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCce
Confidence 776652 2 34444444443 3333334444444444 455555555433222222 22455555555555
Q ss_pred ee
Q 039394 139 SG 140 (157)
Q Consensus 139 ~~ 140 (157)
++
T Consensus 213 ~~ 214 (276)
T 2z62_A 213 KS 214 (276)
T ss_dssp SC
T ss_pred ee
Confidence 43
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=126.46 Aligned_cols=155 Identities=24% Similarity=0.227 Sum_probs=100.2
Q ss_pred CcEEECcCCcccccc--Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--------ceeeeee
Q 039394 1 MEYLDLSDNQLSEEI--PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--------IIVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~~--p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------~~l~~l~ 68 (157)
|++|++++|.+++.. |..+..+++|++| .+|.+.+..+ .+..+++|++|++++|.+.+.. ++++.|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 456777777766432 5556667777777 5666554333 3666777777777777665332 2666677
Q ss_pred cccccccceE--EEceeeeeccc------cc-cccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 69 LQMVQKKNSI--AIINVVVVGEL------FK-RPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 69 l~~n~l~~~~--~~~~~~~l~~~------~~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+++|.+.+.. .+..+..++++ +. +.+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 7777665543 33334444443 22 356777777888888888888877777777778888888888888877
Q ss_pred ecCCCC----CCcccccCCCC
Q 039394 140 GKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 140 ~~~p~~----~~l~~l~~~~~ 156 (157)
+..|.. +.++.++++.+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCHHHhhcccCCcEEEecCC
Confidence 765543 66777777654
No 54
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.2e-16 Score=108.69 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=112.6
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n 72 (157)
+.++.++++++ .+|..+. ++|++| .+|.+.+..|..+..+++|++|++++|.+.+. +++|+.|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 46788888888 6776554 789999 88999988889999999999999999998632 238899999999
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCc
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKL 148 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l 148 (157)
.+.+ ..+..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+.+..+.. +++
T Consensus 99 ~l~~----------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 99 QLTV----------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp CCCC----------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCc----------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 9983 23445788999999999999988 88999999999999999999998665543 778
Q ss_pred ccccCCCC
Q 039394 149 QTLDASSY 156 (157)
Q Consensus 149 ~~l~~~~~ 156 (157)
+.++++.+
T Consensus 162 ~~L~l~~N 169 (229)
T 3e6j_A 162 THAYLFGN 169 (229)
T ss_dssp CEEECTTS
T ss_pred CEEEeeCC
Confidence 88887764
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2e-16 Score=124.02 Aligned_cols=61 Identities=26% Similarity=0.199 Sum_probs=43.1
Q ss_pred cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394 96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY 156 (157)
Q Consensus 96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~ 156 (157)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+.. +.++.|+++.+
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC
Confidence 44667777888888888877777777777888888888888776642222 56667776654
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.1e-17 Score=134.20 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=19.4
Q ss_pred ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.+..+++|+.|++++|++. .+| .++.+++|+.|++++|.+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence 4444444444444444444 444 4444444444444444444
No 57
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.8e-16 Score=103.38 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=71.5
Q ss_pred CcEEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccce
Q 039394 1 MEYLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNS 77 (157)
Q Consensus 1 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~ 77 (157)
|+.|++++|.++ +.+|..+..+++|++| .+|.+.+. ..+..+++|++|++++|.+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~------------------ 78 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG------------------ 78 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS------------------
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc------------------
Confidence 456777777776 5666666667777777 56665543 556667777777777776654
Q ss_pred EEEceeeeeccccccccccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceecCC---CC----CCcc
Q 039394 78 IAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGKIP---SG----TKLQ 149 (157)
Q Consensus 78 ~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~----~~l~ 149 (157)
.+|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..+ .. ++++
T Consensus 79 ---------------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 79 ---------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp ---------------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred ---------------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 2444555566666666666665532 23556666666666666666654433 11 5555
Q ss_pred cccCC
Q 039394 150 TLDAS 154 (157)
Q Consensus 150 ~l~~~ 154 (157)
.||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 55553
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.7e-16 Score=117.45 Aligned_cols=125 Identities=26% Similarity=0.184 Sum_probs=93.4
Q ss_pred CcEEECcCCccccccCcchh-cccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSR-YWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~ 70 (157)
++.|+|++|.+++..+..+. .+++|++| ..|.+.+..+..|..+++|++|++++|++++.. ++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 46788888888866666665 77888888 777777766677888888888888888876432 277788888
Q ss_pred cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhh---hcCCCCCeEEccCCcceec
Q 039394 71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI---SQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~ 141 (157)
+|.+.. ..|..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+.+.
T Consensus 121 ~N~i~~----------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 121 NNHIVV----------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp SSCCCE----------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcccE----------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 888763 356778888999999999999885444444 5688999999999988753
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=3e-16 Score=106.97 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=103.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.++ .+| .+..+++|++| .+|.+. .++.+..+++|++|++++|.+++. +++++.|++++
T Consensus 46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 578899999998 566 68888999999 566443 345788899999999999988752 23888999999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCcc
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQ 149 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~ 149 (157)
|.+.+ ..|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+.+..+-. ++++
T Consensus 122 n~i~~----------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 122 SAHDD----------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184 (197)
T ss_dssp SBCBG----------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCC
T ss_pred CccCc----------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCC
Confidence 98873 357778888899999999998444666 6788889999999999887632211 7788
Q ss_pred cccCCCC
Q 039394 150 TLDASSY 156 (157)
Q Consensus 150 ~l~~~~~ 156 (157)
.|+++.+
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 8887764
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.1e-16 Score=112.02 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=112.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--cccc-ceeecCccCcCCCCCCEEEccC-Ccceee-------cceeeeeec
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-INGCVPIRLCYVRPVQVLDISY-SSILGD-------IIIVSMIDL 69 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~~~~~-------~~~l~~l~l 69 (157)
|++|++++|++++..+..+..+++|++| ..|. +.+..+..+..+++|++|++++ |.+++. +++++.|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 5789999999997666788899999999 7775 7766666889999999999998 888643 338899999
Q ss_pred ccccccceEEEceeeeec---cc-------cccccccccccccCCC-EEecCCCccCCCCChhhhcCCCCCeEEccCCc-
Q 039394 70 QMVQKKNSIAIINVVVVG---EL-------FKRPIPTKIDQLTMLH-ALDLSRNQPIGKIPEGISQLGLLGVLSLSNNK- 137 (157)
Q Consensus 70 ~~n~l~~~~~~~~~~~l~---~~-------~~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~- 137 (157)
++|.+.+.+.+..+..++ .+ +....+..+..+++|+ .+++++|++. .+|......++|+.|++++|+
T Consensus 113 ~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY 191 (239)
T ss_dssp EEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred CCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence 999988755444444443 22 3333344577888888 8888888877 555543334788888888884
Q ss_pred ceecCCCC-----CCcccccCCCC
Q 039394 138 LSGKIPSG-----TKLQTLDASSY 156 (157)
Q Consensus 138 l~~~~p~~-----~~l~~l~~~~~ 156 (157)
+.+..+.. +.++.+|++.+
T Consensus 192 l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 192 LTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CCEECTTTTTTCSBCCSEEECTTC
T ss_pred cccCCHHHhhccccCCcEEECCCC
Confidence 77554443 46777777654
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=2.5e-16 Score=117.46 Aligned_cols=60 Identities=27% Similarity=0.199 Sum_probs=41.1
Q ss_pred ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394 97 KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY 156 (157)
Q Consensus 97 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~ 156 (157)
.+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +.++.|+++.+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 4566677777777777777766777777777777777777776532222 56666666654
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=6.1e-17 Score=113.36 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=120.0
Q ss_pred CcEEECcCCc-cccccCcchhcccccccc--cc-ccceeecCccCcCCCCCCEEEccCCcceeecc------eee---ee
Q 039394 1 MEYLDLSDNQ-LSEEIPHCSRYWQSLKVL--KS-NHINGCVPIRLCYVRPVQVLDISYSSILGDII------IVS---MI 67 (157)
Q Consensus 1 L~~L~L~~n~-l~~~~p~~~~~l~~L~~L--~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~l~---~l 67 (157)
|++|++++|. ++...+..|..+++|++| .+ |.+.+..+..+..+++|++|++++|.+++ +| +++ .+
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L 135 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFIL 135 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEE
Confidence 6789999997 886666688999999999 65 88887777788999999999999998874 33 555 99
Q ss_pred ecccc-cccceE--EEceeeeec-cc------cccccccccccccCCCEEecCCCc-cCCCCChhhhcC-CCCCeEEccC
Q 039394 68 DLQMV-QKKNSI--AIINVVVVG-EL------FKRPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQL-GLLGVLSLSN 135 (157)
Q Consensus 68 ~l~~n-~l~~~~--~~~~~~~l~-~~------~~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l-~~L~~L~ls~ 135 (157)
++++| .+.... .+..+..++ ++ +. .+|......++|+.+++++|+ +.+..+..+..+ ++|+.|++++
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 99999 887766 356666665 54 33 455544344789999999995 886667788999 9999999999
Q ss_pred CcceecCCCC-CCcccccCCCC
Q 039394 136 NKLSGKIPSG-TKLQTLDASSY 156 (157)
Q Consensus 136 N~l~~~~p~~-~~l~~l~~~~~ 156 (157)
|++++..+.. ..++.|++++.
T Consensus 215 N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCTTCTTCSEEECTTC
T ss_pred CccccCChhHhccCceeeccCc
Confidence 9998543333 78888887653
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=120.61 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=74.4
Q ss_pred cEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcceeecc--------eeeeeec
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSILGDII--------IVSMIDL 69 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~l 69 (157)
++|++++|.+++.+|..+..+++|++| ..|.+.+ .+|..+..+++|++|++++|.+.+.+| +++.|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 344444444444444444444444444 3444443 233344444444444444444443111 3444444
Q ss_pred ccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----
Q 039394 70 QMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---- 145 (157)
Q Consensus 70 ~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---- 145 (157)
++|.+. +..|..+. ++|+.|++++|++. .+|..+..+++|++|++++|.++. +|..
T Consensus 407 s~N~l~----------------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 466 (520)
T 2z7x_B 407 SSNILT----------------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDR 466 (520)
T ss_dssp CSSCCC----------------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred cCCCCC----------------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence 444443 34444433 67888888888877 777777788888888888888774 4432
Q ss_pred -CCcccccCCCC
Q 039394 146 -TKLQTLDASSY 156 (157)
Q Consensus 146 -~~l~~l~~~~~ 156 (157)
+.++.++++.+
T Consensus 467 l~~L~~L~l~~N 478 (520)
T 2z7x_B 467 LTSLQKIWLHTN 478 (520)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcccEEECcCC
Confidence 56777777654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.5e-17 Score=118.90 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=87.2
Q ss_pred CcEEECcCCccccccCcch--hcccccccc--ccccceeecCccCcCC-----CCCCEEEccCCcceeec-------cee
Q 039394 1 MEYLDLSDNQLSEEIPHCS--RYWQSLKVL--KSNHINGCVPIRLCYV-----RPVQVLDISYSSILGDI-------IIV 64 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L--~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~~~~~~-------~~l 64 (157)
|++|++++|.+++.+|..+ ..+++|++| .+|.+.+. |..+..+ ++|++|++++|.+.+.. +++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4566777777766666654 666677777 56666654 5555554 66777777777665433 266
Q ss_pred eeeecccccccceE----EE--ceeeeeccc------ccc--ccc-cccccccCCCEEecCCCccCCCCC-hhhhcCCCC
Q 039394 65 SMIDLQMVQKKNSI----AI--INVVVVGEL------FKR--PIP-TKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLL 128 (157)
Q Consensus 65 ~~l~l~~n~l~~~~----~~--~~~~~l~~~------~~~--~~p-~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L 128 (157)
+.|++++|++.+.. .+ ..+..++++ +.+ .++ ..+..+++|++|++++|++.+..| ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 67777777654321 11 333344433 220 111 122345666666666666665553 334455666
Q ss_pred CeEEccCCcceecCCCC--CCcccccCCCC
Q 039394 129 GVLSLSNNKLSGKIPSG--TKLQTLDASSY 156 (157)
Q Consensus 129 ~~L~ls~N~l~~~~p~~--~~l~~l~~~~~ 156 (157)
++|++++|.++ .+|.. +.++.||++.+
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLPAKLSVLDLSYN 284 (312)
T ss_dssp CEEECTTSCCS-SCCSSCCSEEEEEECCSS
T ss_pred CEEECCCCccC-hhhhhccCCceEEECCCC
Confidence 77777777666 44544 45666666554
No 65
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5e-16 Score=105.54 Aligned_cols=123 Identities=19% Similarity=0.169 Sum_probs=100.6
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
+++++++++++ .+|..+.. ++++| .+|.+.+..+. .+..+++|++|++++|.+++..| +++.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57899999997 77765543 78888 78888765554 48899999999999999886543 788899999
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
|.+.+ ..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKE----------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCE----------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCc----------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99874 345568889999999999999998889999999999999999999876543
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.3e-16 Score=106.45 Aligned_cols=103 Identities=21% Similarity=0.165 Sum_probs=89.7
Q ss_pred CcEEECcCCccccccCc-chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPH-CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~-~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~ 70 (157)
|++|++++|.+++..+. .+..+++|++| .+|.+.+..|..+..+++|++|++++|.+++..+ +++.|+++
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 57899999999966554 48999999999 8999998889999999999999999999985443 88999999
Q ss_pred cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC
Q 039394 71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP 119 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 119 (157)
+|.+.+ ..|..+..+++|+++++++|.+.+..+
T Consensus 111 ~N~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 111 DNQISC----------------VMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSCCCE----------------ECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCe----------------eCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999984 468889999999999999999987654
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=5.2e-16 Score=113.33 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=83.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccce--eecCccCcCCCCCCEEEccCCcceee----cceeeeeecccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHIN--GCVPIRLCYVRPVQVLDISYSSILGD----IIIVSMIDLQMV 72 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~----~~~l~~l~l~~n 72 (157)
|++|++++|.+++..+..+..+++|++| ..|.+. +..+..+..+++|++|++++|.++.. .++++.|++++|
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence 3455555555554444445566666666 445443 24455566666666666666665521 126667777777
Q ss_pred cccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecC
Q 039394 73 QKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKI 142 (157)
Q Consensus 73 ~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 142 (157)
.+.+.. .+..+..++.+ +.+..+..+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++..
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence 766543 33344444433 44444556667777777777777766 66777777777777777777776543
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=5.1e-16 Score=122.98 Aligned_cols=62 Identities=21% Similarity=0.123 Sum_probs=46.3
Q ss_pred ccccccccccC--CCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCC
Q 039394 93 PIPTKIDQLTM--LHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDAS 154 (157)
Q Consensus 93 ~~p~~~~~l~~--L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~ 154 (157)
..|..+..++. |+.|++++|++.+..|..+..+++|+.|++++|.+.+..|.. +.++.++++
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 34555666654 888888888888777788888888888999888888776654 566666654
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=6.3e-16 Score=115.25 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=84.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~ 71 (157)
+++++++++.++...+..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+.+..| +++.|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 4678888888884444456888889988 7788887777788889999999999988875432 788889999
Q ss_pred ccccceEEEceeeeeccccccccccc-cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
|.+.. +|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 127 n~l~~-----------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 127 NDLSS-----------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CccCc-----------------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 88874 3333 3455555555555555554445555555555555555555543
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.8e-16 Score=125.56 Aligned_cols=125 Identities=22% Similarity=0.140 Sum_probs=78.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
+++|++++|.+++..+..+..+++|++| ..|.+.+..|..+..+++|++|++++|.+++. +++++.|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 4677777777776666667777777777 66777766677777777777777777776532 22677777777
Q ss_pred ccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
|.+.+. .|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 107 n~l~~~----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 107 NSIQKI----------------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SCCCCC----------------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CccCcc----------------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 777643 233445555555555555555544444555555555555555555443
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=6.1e-16 Score=121.29 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=87.8
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
++.+++++|.+....+..+..+++|++| .+|.+.+..|..+..+++|++|++++|.+.+.. ++|+.|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 4678888888885555567888888888 778888777778888999999999988886543 3788888888
Q ss_pred ccccceEEEceeeeeccccccccccc-cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTK-IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
|.+.. +|.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 133 n~l~~-----------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 133 NDLSS-----------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCC-----------------CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 88874 3333 3556666666666666665555566666666666666666554
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=125.78 Aligned_cols=156 Identities=20% Similarity=0.195 Sum_probs=115.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeec-CccCcCCCCCCEEEccCCcceeecc-------eeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCV-PIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~ 70 (157)
+++|+|++|.+++..|..+..+++|++| ..|...+.+ |..+..+++|++|++++|.+.+..| +|+.|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 5789999999998888899999999999 666455444 7789999999999999999876544 88899999
Q ss_pred cccccceE----EEceeeeeccc------ccccc-ccccccccCCCEEecCCCccCCCCChhhhcC--CCCCeEEccCCc
Q 039394 71 MVQKKNSI----AIINVVVVGEL------FKRPI-PTKIDQLTMLHALDLSRNQPIGKIPEGISQL--GLLGVLSLSNNK 137 (157)
Q Consensus 71 ~n~l~~~~----~~~~~~~l~~~------~~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l--~~L~~L~ls~N~ 137 (157)
+|.+.+.. .+..+..++++ +.+.. +..++.+++|++|++++|.+.+..+..+..+ ++|+.|+++.|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99987632 25555555555 33332 3467777888888888888777777777766 777888888887
Q ss_pred ceecCCCC----------CCcccccCCCC
Q 039394 138 LSGKIPSG----------TKLQTLDASSY 156 (157)
Q Consensus 138 l~~~~p~~----------~~l~~l~~~~~ 156 (157)
+.+..|.. ..++.|+++.+
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cccccccchhhcCCccccCceeEEecCCC
Confidence 77766543 12677777654
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=5.9e-16 Score=113.17 Aligned_cols=139 Identities=21% Similarity=0.247 Sum_probs=79.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee--e----------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG--D---------------- 60 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~---------------- 60 (157)
|++|++++|.++ .+|..+. ++|++| ..|.+.+..+..+..+++|++|++++|.++. .
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCC
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECc
Confidence 455666666665 4443332 455555 4555554444445555555555555555431 1
Q ss_pred ------c-----ceeeeeecccccccceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChh
Q 039394 61 ------I-----IIVSMIDLQMVQKKNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG 121 (157)
Q Consensus 61 ------~-----~~l~~l~l~~n~l~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 121 (157)
+ ++++.|++++|.+.+.. .+..+..++.+ +.+..+..+..+++|++|++++|++. .+|..
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 1 14555556666555443 34444444444 44444556677777777777777766 67777
Q ss_pred hhcCCCCCeEEccCCcceecCC
Q 039394 122 ISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 122 ~~~l~~L~~L~ls~N~l~~~~p 143 (157)
+..+++|+.|++++|.+++..+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCT
T ss_pred hhcCccCCEEECCCCCCCccCh
Confidence 7777777777777777765433
No 74
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.6e-15 Score=102.97 Aligned_cols=136 Identities=17% Similarity=0.095 Sum_probs=109.9
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n 72 (157)
+.++.+.++++ .+|..+ .+++++| ..|.+.+..+..+..+++|++|++++|.+++. +++++.|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35778888887 556544 3578888 78888876677788999999999999998743 238899999999
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCc
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKL 148 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l 148 (157)
.+.+ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..+.. +++
T Consensus 87 ~l~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 87 QLQS----------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CCCC----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCc----------------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 9973 23445788999999999999999777777899999999999999998765543 788
Q ss_pred ccccCCCC
Q 039394 149 QTLDASSY 156 (157)
Q Consensus 149 ~~l~~~~~ 156 (157)
+.++++.+
T Consensus 151 ~~L~l~~N 158 (208)
T 2o6s_A 151 QYIWLHDN 158 (208)
T ss_dssp CEEECCSC
T ss_pred cEEEecCC
Confidence 88888764
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=9.1e-16 Score=119.38 Aligned_cols=136 Identities=20% Similarity=0.346 Sum_probs=79.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--cccccee--ecCccCcCCCCCCEEEccCCcceeecc--------eeeeee
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHING--CVPIRLCYVRPVQVLDISYSSILGDII--------IVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~~l~ 68 (157)
|++|++++|.+++.+|..+..+++|++| ..|.+.+ ..|..+..+++|++|++++|.+++.+| +++.++
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 3455666666655555555555666655 4555543 223445555666666666665554222 455555
Q ss_pred cccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394 69 LQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--- 145 (157)
Q Consensus 69 l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--- 145 (157)
+++|.+.+ ..|..+. ++|+.|++++|++. .+|..+..+++|+.|++++|.+++ +|..
T Consensus 435 l~~n~l~~----------------~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 494 (562)
T 3a79_B 435 LSSNMLTG----------------SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFD 494 (562)
T ss_dssp CCSSCCCG----------------GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTT
T ss_pred CCCCCCCc----------------chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHh
Confidence 55555542 3443332 57777777777766 666666677777778887777774 3432
Q ss_pred --CCcccccCCCC
Q 039394 146 --TKLQTLDASSY 156 (157)
Q Consensus 146 --~~l~~l~~~~~ 156 (157)
+.++.++++.+
T Consensus 495 ~l~~L~~L~l~~N 507 (562)
T 3a79_B 495 RLTSLQYIWLHDN 507 (562)
T ss_dssp TCTTCCCEECCSC
T ss_pred cCCCCCEEEecCC
Confidence 56666666654
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=112.49 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=112.2
Q ss_pred CcEEECcCCccccccC----cchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----------ecce
Q 039394 1 MEYLDLSDNQLSEEIP----HCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----------DIII 63 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p----~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----------~~~~ 63 (157)
|++|++++|.+++..+ ..+..+++|++| ..|.+.+..+..+..+++|++|++++|++.+ .+++
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 5788999999986544 334568889999 7888887778889999999999999998642 3458
Q ss_pred eeeeecccccccceEE-----Eceeeeeccc------cccccccccccc---cCCCEEecCCCccCCCCChhhhcCCCCC
Q 039394 64 VSMIDLQMVQKKNSIA-----IINVVVVGEL------FKRPIPTKIDQL---TMLHALDLSRNQPIGKIPEGISQLGLLG 129 (157)
Q Consensus 64 l~~l~l~~n~l~~~~~-----~~~~~~l~~~------~~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 129 (157)
++.|++++|.+..... +..+..++++ +.+..|..+..+ ++|++|++++|++. .+|..+. ++|+
T Consensus 199 L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 199 IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp CCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred CCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 8999999999875331 2333444444 555556666666 58888888888877 6677653 6888
Q ss_pred eEEccCCccee-cCCCC-CCcccccCCCC
Q 039394 130 VLSLSNNKLSG-KIPSG-TKLQTLDASSY 156 (157)
Q Consensus 130 ~L~ls~N~l~~-~~p~~-~~l~~l~~~~~ 156 (157)
.|++++|.+++ +.+.. ++++.|+++.+
T Consensus 276 ~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 276 VLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred EEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 88888888886 33333 77888887765
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=116.34 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=21.5
Q ss_pred ChhhhcCCCCCeEEccCCcceecCCCC-----CCcccccCCCC
Q 039394 119 PEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASSY 156 (157)
Q Consensus 119 p~~~~~l~~L~~L~ls~N~l~~~~p~~-----~~l~~l~~~~~ 156 (157)
|+.+..+++|+.|++++|.++ .+|.. +.++.++++.+
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 334556667777777777666 33432 55666666543
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2e-15 Score=117.84 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=91.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI 78 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~ 78 (157)
|++|++++|.+++ +|. +..+++|+.| ..|.+. .+|..++.+++|++|++++|.++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-------------------- 499 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-------------------- 499 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--------------------
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--------------------
Confidence 4677888888874 565 7777788877 667776 66777778888888888777776
Q ss_pred EEceeeeeccccccccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCCCC-------CCccc
Q 039394 79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIPSG-------TKLQT 150 (157)
Q Consensus 79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~-------~~l~~ 150 (157)
.+| .++.+++|+.|++++|++.+.. |..++.+++|+.|++++|++++..|.. ++++.
T Consensus 500 --------------~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 500 --------------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp --------------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred --------------CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 366 7889999999999999999776 999999999999999999999876654 56666
Q ss_pred cc
Q 039394 151 LD 152 (157)
Q Consensus 151 l~ 152 (157)
||
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=123.94 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=119.7
Q ss_pred CcEEECcCCcccccc-Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec---------ceeeeee
Q 039394 1 MEYLDLSDNQLSEEI-PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI---------IIVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~~-p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~---------~~l~~l~ 68 (157)
|++|++++|...+.+ |..+..+++|++| ..|.+.+..|+.+..+++|++|++++|.+.+.. ++|+.|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 678999999766666 7788999999999 788888888999999999999999999887533 3889999
Q ss_pred cccccccceE---EEceeeeeccc------cccccccccccc--cCCCEEecCCCccCCCCChhhhcCCC------CCeE
Q 039394 69 LQMVQKKNSI---AIINVVVVGEL------FKRPIPTKIDQL--TMLHALDLSRNQPIGKIPEGISQLGL------LGVL 131 (157)
Q Consensus 69 l~~n~l~~~~---~~~~~~~l~~~------~~~~~p~~~~~l--~~L~~L~l~~N~l~~~~p~~~~~l~~------L~~L 131 (157)
+++|.+.+.. .+..+..++++ +.+..|..+..+ ++|+.|+++.|.+.+..|..++.+.+ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 9999998764 45666666666 555677777777 89999999999999988887777665 9999
Q ss_pred EccCCcceecCCCC
Q 039394 132 SLSNNKLSGKIPSG 145 (157)
Q Consensus 132 ~ls~N~l~~~~p~~ 145 (157)
++++|.+++..|..
T Consensus 210 ~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 210 DVSGNGWTVDITGN 223 (844)
T ss_dssp BCSSCCSSTTTTSG
T ss_pred ecCCCcCchhHHHH
Confidence 99999988877654
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=7.6e-16 Score=112.98 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=98.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|++|++++|.+.+ ++. +..+++|+++ ..|.+.+..+ +..+++|++|++++|.+++. +++++.|++++|.
T Consensus 179 L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 179 LYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp CSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc
Confidence 3455555555552 222 4455555555 4444443222 55666777777777766532 2366777777777
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-- 145 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 145 (157)
+.+...+..+..++++ +. .+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..|-.
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 332 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL 332 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGC
T ss_pred cCCChhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhh
Confidence 6654333333344433 22 23 35788899999999999998888888999999999999999998876633
Q ss_pred CCcccccCCCC
Q 039394 146 TKLQTLDASSY 156 (157)
Q Consensus 146 ~~l~~l~~~~~ 156 (157)
++++.+|++.+
T Consensus 333 ~~L~~L~l~~N 343 (347)
T 4fmz_A 333 SKMDSADFANQ 343 (347)
T ss_dssp TTCSEESSSCC
T ss_pred hccceeehhhh
Confidence 88889988875
No 81
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=101.36 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=96.0
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n 72 (157)
+++++++++++ .+|..+. +++++| .+|.+. .+|..+..+++|++|++++|.+++.. ++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46889999988 6676553 578888 777777 67788999999999999999987533 37888999999
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
.+.. ..|..+..+++|++|++++|++....+..+..+++|+.|++++|++.
T Consensus 89 ~l~~----------------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRC----------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCB----------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCE----------------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8873 34567888999999999999998666667889999999999999875
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.5e-15 Score=110.29 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=20.7
Q ss_pred cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 98 IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 98 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+..+++|+.|++++|++.+ ++. +..+++|+.|++++|.+.+
T Consensus 169 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence 4445555555555555442 222 4555555555555555544
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=3.2e-15 Score=101.81 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=98.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|++|++++|.++ .++.+..+++|++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++
T Consensus 68 L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 68 IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 678999999775 33478889999999 88888887888999999999999999999853 33899999999
Q ss_pred cc-ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 72 VQ-KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 72 n~-l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
|. +. .+| .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus 146 n~~i~-----------------~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 146 NGAIT-----------------DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTBCC-----------------CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCcc-----------------ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 98 65 455 68899999999999999885 55 78899999999999999875
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.7e-15 Score=116.30 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=70.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec--------ceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI--------IIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------~~l~~l~l~ 70 (157)
|++|++++|.+++..+. .+++|++| .+|.+.+..|..+..+++|++|++++|.+++.. ++++.|+++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 34555555555543332 23556666 566666555666666666666666666665422 256666666
Q ss_pred cccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 71 MVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+|.+.+......+..+..+ +. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|++.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccccccccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 6666543211111111111 11 23444555666666666666655 35555555666666666666654
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=9.8e-16 Score=111.20 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=81.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|++|++++|.++ .+| .+..+++|++| .+|.+.+. +. +..+++|++|++++|.+++. +++++.|++++|.
T Consensus 43 L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred cCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence 455666666665 333 45556666666 55555532 22 55666666666666655421 2255666666666
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-- 145 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 145 (157)
+.+...+..+..++++ +. .++. +..+++|++|++++|++.+ ++. +..+++|+.|++++|.+.+..+-.
T Consensus 119 l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l 194 (308)
T 1h6u_A 119 ITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASL 194 (308)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCchhhcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCC
Confidence 5544333333333333 21 2222 5666777777777777663 333 667777777777777766543311
Q ss_pred CCcccccCCCC
Q 039394 146 TKLQTLDASSY 156 (157)
Q Consensus 146 ~~l~~l~~~~~ 156 (157)
++++.|+++.+
T Consensus 195 ~~L~~L~L~~N 205 (308)
T 1h6u_A 195 PNLIEVHLKNN 205 (308)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEEccCC
Confidence 56666666544
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.7e-15 Score=100.43 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=97.4
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeecccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQMV 72 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~n 72 (157)
+.+++++++++ .+|..+ .+++++| .+|.+.+..+..+..+++|++|++++|.+++. +++++.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 46888899888 556444 3678888 77888866666788999999999999988743 237889999999
Q ss_pred cccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 73 QKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 73 ~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus 87 ~l~~----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQS----------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCC----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred Cccc----------------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8873 234456889999999999999986666667889999999999999887544
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=2.4e-15 Score=109.48 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=74.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee--------cceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD--------IIIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--------~~~l~~l~l~ 70 (157)
|++|++++|.+++..+. .+++|++| ..|.+.+..+..+..+++|++|++++|.+.+. +++++.|+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 34555566655543332 24556666 66666655555666667777777777766532 2366667777
Q ss_pred cccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 71 MVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+|.+.+......+..++++ +. .+|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 7766643211112222222 11 34444666666666666666655 45555666666666666666665
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=5.4e-15 Score=105.11 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=76.6
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec----ceeeeeecccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI----IIVSMIDLQMVQK 74 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~l~~l~l~~n~l 74 (157)
|++|++++|.++ .++ .+..+++|++| .+|.+.+.. + +..+++|++|++++|++++.- ++++.|++++|.+
T Consensus 43 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l 118 (263)
T 1xeu_A 43 VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL 118 (263)
T ss_dssp CSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCC
T ss_pred CcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCCcCccccCcccEEEccCCcc
Confidence 578899999888 555 67888889988 777777543 3 888999999999999886421 3788889999988
Q ss_pred cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
.+.. .+..+++|+.|++++|++.+ ++ .+..+++|+.|++++|.+.+
T Consensus 119 ~~~~------------------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 119 RDTD------------------SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SBSG------------------GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCh------------------hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 7432 24444445555555554442 22 34444455555555554443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1.8e-15 Score=108.99 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=78.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
|++|++++|.+. .++ .+..+++|++| ..|.+.+.. + +..+++|++|++++|.+++ .+++++.|++++|.
T Consensus 48 L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 48 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred ccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCc
Confidence 456666666665 333 35666666666 556555432 2 5666666666666666553 12256666666666
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-- 145 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 145 (157)
+.+...+..+..++.+ +. .+ ..+..+++|++|++++|++.+..+ +..+++|+.|++++|.+++. |..
T Consensus 124 i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~ 198 (291)
T 1h6t_A 124 ISDINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG 198 (291)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred CCCChhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhcc
Confidence 6543323333333333 11 12 345666666777777776664333 66666667777776666542 222
Q ss_pred -CCcccccCC
Q 039394 146 -TKLQTLDAS 154 (157)
Q Consensus 146 -~~l~~l~~~ 154 (157)
++++.|+++
T Consensus 199 l~~L~~L~l~ 208 (291)
T 1h6t_A 199 LKNLDVLELF 208 (291)
T ss_dssp CTTCSEEEEE
T ss_pred CCCCCEEECc
Confidence 455555543
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=114.65 Aligned_cols=123 Identities=25% Similarity=0.353 Sum_probs=107.4
Q ss_pred CcEEECcCCcccc--ccCcchhcccccccc--ccccceeecCc-cCcCCCCCCEEEccCCcceeecc-----eeeeeecc
Q 039394 1 MEYLDLSDNQLSE--EIPHCSRYWQSLKVL--KSNHINGCVPI-RLCYVRPVQVLDISYSSILGDII-----IVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L--~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~ 70 (157)
|++|++++|.+++ .+|..+..+++|++| ..|.+.+.+|. .+..+++|++|++++|.+++..| +++.|+++
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls 429 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC
Confidence 6899999999996 567788999999999 88998875665 48889999999999999976543 89999999
Q ss_pred cccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChh-hhcCCCCCeEEccCCcceec
Q 039394 71 MVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEG-ISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 71 ~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~ 141 (157)
+|.+. .+|..+..+++|++|++++|++. .+|.. +..+++|+.+++++|++.+.
T Consensus 430 ~N~l~-----------------~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 430 SNKIK-----------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCC-----------------CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccc-----------------ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 99998 68888889999999999999998 56665 89999999999999998763
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=6.6e-16 Score=119.50 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=109.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-e-------cceeeeeecc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-D-------IIIVSMIDLQ 70 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~-------~~~l~~l~l~ 70 (157)
|++|++++|++++..|..+..+++|++| .+|.+.+..|..++.+++|++|++++|.+++ . +++++.|+++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 6899999999998888899999999999 8888887777779999999999999998874 1 2388999999
Q ss_pred cccc-cceE--EEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCccee
Q 039394 71 MVQK-KNSI--AIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 71 ~n~l-~~~~--~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~ 140 (157)
+|.+ .... .+..+..++++ +.+..|..+..+++|++|+++.|.+. .+|..+ ..+++|+.|++++|.+.+
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 9984 3332 34444555444 56667888888888888888888865 455543 568889999999988876
Q ss_pred c
Q 039394 141 K 141 (157)
Q Consensus 141 ~ 141 (157)
.
T Consensus 211 ~ 211 (549)
T 2z81_A 211 F 211 (549)
T ss_dssp C
T ss_pred c
Confidence 3
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=4.3e-15 Score=109.97 Aligned_cols=122 Identities=24% Similarity=0.192 Sum_probs=103.9
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~ 71 (157)
|++|+|++|++++..+..|..+++|++| ..|.+.+..+..|..+++|++|++++|.+.+.. ++|+.|++++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 6899999999997777889999999999 889998877788999999999999999997543 3899999999
Q ss_pred ccccceEEEceeeeecccccccccccc----ccccCCCEEecCCCccCCCCChhhhcCCC--CCeEEccCCcce
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPTKI----DQLTMLHALDLSRNQPIGKIPEGISQLGL--LGVLSLSNNKLS 139 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~~~----~~l~~L~~L~l~~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~ 139 (157)
|.+. .+|..+ ..+++|+.|++++|++.+..+..+..++. ++.|++++|++.
T Consensus 146 N~l~-----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 146 NQIS-----------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCC-----------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCC-----------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9998 455554 56899999999999999666677888876 488999999875
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=98.57 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=88.5
Q ss_pred ccccceeecCccCcCCCCCCEEEccCCcceee------cceeeeeecccccccceEEEceeeeecccccccccccccccc
Q 039394 29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGD------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLT 102 (157)
Q Consensus 29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~ 102 (157)
.++.+. .+|..+ .+++++|++++|.++.. +++++.|++++|.+.+ ..+..+..++
T Consensus 18 ~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----------------i~~~~f~~l~ 78 (193)
T 2wfh_A 18 SNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----------------LSNQSFSNMT 78 (193)
T ss_dssp TTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----------------CCTTTTTTCT
T ss_pred CCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----------------eCHhHccCCC
Confidence 566666 566654 36899999999998721 2388999999999984 3456789999
Q ss_pred CCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 103 MLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 103 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
+|++|++++|++.+..|..+..+++|+.|++++|.+++..+.. ++++.++++.+
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 9999999999999888889999999999999999998655543 77888888764
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=1.1e-14 Score=113.75 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=77.6
Q ss_pred CcCCCCCCEEEccCCcceeecc-------eeeeeecccccccce-E--EEceeeeeccc------cccccccccccccCC
Q 039394 41 LCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNS-I--AIINVVVVGEL------FKRPIPTKIDQLTML 104 (157)
Q Consensus 41 ~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~-~--~~~~~~~l~~~------~~~~~p~~~~~l~~L 104 (157)
+..+++++.++++.|.+.+..+ .++.+++++|.+... . .+..+..++++ +.+..|..+..+++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 3444444555555544443222 445555555543221 1 23333333333 344578889999999
Q ss_pred CEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC-----CCcccccCCCC
Q 039394 105 HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-----TKLQTLDASSY 156 (157)
Q Consensus 105 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-----~~l~~l~~~~~ 156 (157)
++|++++|++.+..|..+..+++|++|++++|.+++..|.. +.++.|+++.+
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999888888999999999999999999888875 56888888764
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=9.2e-15 Score=113.72 Aligned_cols=118 Identities=22% Similarity=0.220 Sum_probs=55.4
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-----eeeeeecccccc
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-----IVSMIDLQMVQK 74 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----~l~~l~l~~n~l 74 (157)
++|++++|.+++..|..+..+++|++| ..|.+.+..|+.+..+++|++|++++|.++ .+| +++.|++++|.+
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHLDLSFNDF 133 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSCCCTTCSEEECCSSCC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCccccccCCEEECCCCCc
Confidence 344444444443333444444444444 444444444444444444444444444443 121 444444444444
Q ss_pred cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCC--CeEEccCCcc
Q 039394 75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL--GVLSLSNNKL 138 (157)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L--~~L~ls~N~l 138 (157)
.+. ..|..++.+++|++|++++|++.+. .+..++++ +.|++++|.+
T Consensus 134 ~~l---------------~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 134 DVL---------------PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SBC---------------CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred ccc---------------CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 321 2345566666666666666665532 23333444 6666666655
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=1.5e-14 Score=113.59 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=65.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
|+.|+|++|.+.+..| +..+++|+.| ..|.+.+ + +.+..+++|++|++++|.+.+ .+++|+.|++++|.
T Consensus 67 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 142 (605)
T ss_dssp CCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc
Confidence 4556666666653322 5556666666 4555543 2 245666666666666666543 12356666666666
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+.+...+..+..++.+ +.+..| +..+++|+.|++++|.+.+ + +.+..+++|+.|++++|++.+
T Consensus 143 l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 143 ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 6543222222222222 222222 4445555555555555443 2 234455555555555555543
No 97
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=2.4e-14 Score=95.44 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=84.5
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA 79 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~ 79 (157)
+.+++++|.++ .+|..+. .++++| ..|.+.+..|..+..+++|++|++++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 68 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-------------------- 68 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------------------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--------------------
Confidence 57899999998 5776553 778888 8888888778889999999999999998873
Q ss_pred EceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 80 IINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 80 ~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++...
T Consensus 69 -------------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 69 -------------LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -------------cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 2344467888999999999998876666788899999999999987644
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=2.5e-15 Score=114.46 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=73.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCC-------------CEEEccCCccee--ec-c
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPV-------------QVLDISYSSILG--DI-I 62 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L-------------~~L~l~~n~~~~--~~-~ 62 (157)
|+++++++|.+ +.+|++++.+.+|++| .+|.+.+..|..++.+++| +++++++|.+++ .+ +
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~ 91 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPP 91 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCT
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcC
Confidence 57889999999 6999999999999999 7888888999999888764 888888888765 22 2
Q ss_pred eeeeeecccccccceEEEceeeeeccc-cccccccccccc-cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 63 IVSMIDLQMVQKKNSIAIINVVVVGEL-FKRPIPTKIDQL-TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 63 ~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+++.+++++|.+.+.+.. ...++++ +.+.--..+... ++|++|++++|++.+ +| .++.+++|++|++++|.+.+
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 777788887777764310 0111111 000000011111 355666666666553 44 35556666666666665554
Q ss_pred cCCCC-CCcccccCCC
Q 039394 141 KIPSG-TKLQTLDASS 155 (157)
Q Consensus 141 ~~p~~-~~l~~l~~~~ 155 (157)
+|.. ..++.|+++.
T Consensus 168 -lp~~~~~L~~L~L~~ 182 (454)
T 1jl5_A 168 -LPDLPPSLEFIAAGN 182 (454)
T ss_dssp -CCCCCTTCCEEECCS
T ss_pred -cCCCcccccEEECcC
Confidence 3332 4455554443
No 99
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=5.1e-14 Score=94.21 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=85.9
Q ss_pred ccccceeecCccCcCCCCCCEEEccCCcceeec-------ceeeeeecccccccceEEEceeeeeccccccccccccccc
Q 039394 29 KSNHINGCVPIRLCYVRPVQVLDISYSSILGDI-------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQL 101 (157)
Q Consensus 29 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l 101 (157)
..+.+. .+|..+ .+++++|++++|.+++.. ++++.|++++|.+.+ ..+..+..+
T Consensus 15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~~~~~~~l 75 (177)
T 2o6r_A 15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----------------LPDGVFDKL 75 (177)
T ss_dssp CSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----------------CCTTTTTTC
T ss_pred cCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----------------eChhHccCC
Confidence 455555 455443 478999999999987432 388999999999973 234457889
Q ss_pred cCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC----CCcccccCCCC
Q 039394 102 TMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG----TKLQTLDASSY 156 (157)
Q Consensus 102 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~----~~l~~l~~~~~ 156 (157)
++|++|++++|++.+..+..+..+++|+.|++++|.+++..+.. ++++.++++.+
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 99999999999999777777899999999999999998655543 67888888765
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.7e-14 Score=95.55 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=83.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-------cceeeeeeccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-------IIIVSMIDLQM 71 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------~~~l~~l~l~~ 71 (157)
|+.|++++|.++ .+|......++|++| ..|.+.+. +.+..+++|++|++++|.+++. +++++.|++++
T Consensus 21 L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 21 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred ceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 567888888888 455433333488888 77777754 5678888888888888887642 23677777777
Q ss_pred ccccceEEEceeeeecccccccccc--ccccccCCCEEecCCCccCCCCChh----hhcCCCCCeEEccCCcce
Q 039394 72 VQKKNSIAIINVVVVGELFKRPIPT--KIDQLTMLHALDLSRNQPIGKIPEG----ISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 72 n~l~~~~~~~~~~~l~~~~~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~ 139 (157)
|.+. .+|. .+..+++|+.+++++|.+. .+|.. +..+++|+.||++.|.+.
T Consensus 98 N~i~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 98 NSLV-----------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCCC-----------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CcCC-----------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7776 3454 6677777888888888776 45553 777778888887777653
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.56 E-value=1.6e-14 Score=110.06 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=28.9
Q ss_pred cccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--CCcccccCC
Q 039394 98 IDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--TKLQTLDAS 154 (157)
Q Consensus 98 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~~l~~l~~~ 154 (157)
+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+++..|-. +.++.++++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECC
T ss_pred hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEecc
Confidence 44555555555555555432 34555566666666666655544422 445555444
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=9.3e-15 Score=117.02 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=66.2
Q ss_pred Ccchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeecccccccceEEEceeeee
Q 039394 16 PHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDLQMVQKKNSIAIINVVVV 86 (157)
Q Consensus 16 p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l~~n~l~~~~~~~~~~~l 86 (157)
+..+..+..|+.| .+|.+. .+|..+..+++|++|++++|.++ .+| +|+.|++++|.+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~----------- 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT----------- 283 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-----------
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-----------
Confidence 5556666666666 555555 45555566666667777666665 333 5666666666665
Q ss_pred ccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394 87 GELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 87 ~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
.+|..++.+++|++|++++|.+. .+|..|+.+++|+.|++++|.+++.+|.
T Consensus 284 ------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 284 ------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 45666666667777777777655 5666666667777777777666655443
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=1.7e-14 Score=109.89 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=84.7
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|++|++++|.+++. ++ +..+++|++| ..|.+.+..+ +..+++|++|++++|.+++. +++++.|++++|.
T Consensus 70 L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 70 LTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 145 (466)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEE
T ss_pred CCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCc
Confidence 56778888877744 33 7777778877 6666664433 77788888888888877643 2377788888887
Q ss_pred ccceEEEceeeeeccc-----cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--C
Q 039394 74 KKNSIAIINVVVVGEL-----FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--T 146 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~-----~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~ 146 (157)
+.+...+..+..++++ +. ..+ .+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+..|.. +
T Consensus 146 l~~~~~~~~l~~L~~L~l~~~~~-~~~-~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 221 (466)
T 1o6v_A 146 ISDISALSGLTSLQQLSFGNQVT-DLK-PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILT 221 (466)
T ss_dssp ECCCGGGTTCTTCSEEEEEESCC-CCG-GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred cCCChhhccCCcccEeecCCccc-Cch-hhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccC
Confidence 7654333333333322 11 111 25556666666666666543 2 23555566666666666555443322 4
Q ss_pred CcccccCC
Q 039394 147 KLQTLDAS 154 (157)
Q Consensus 147 ~l~~l~~~ 154 (157)
.++.|+++
T Consensus 222 ~L~~L~l~ 229 (466)
T 1o6v_A 222 NLDELSLN 229 (466)
T ss_dssp TCCEEECC
T ss_pred CCCEEECC
Confidence 44444443
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5.2e-14 Score=94.21 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=80.2
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEE
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIA 79 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~ 79 (157)
+.+++++|+++ .+|..+. .+|++| .+|.+.+..|..+..+++|++|++++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-------------------- 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--------------------
Confidence 46788888887 6776554 678888 7888887778888888999999988888763
Q ss_pred Eceeeeecccccccccc-ccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 80 IINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 80 ~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+|. .+..+++|++|++++|++.+..+..+..+++|+.|++++|++..
T Consensus 72 --------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 72 --------------IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp --------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred --------------cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 443 35778888999999998886555568888889999999888763
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.3e-14 Score=94.41 Aligned_cols=100 Identities=22% Similarity=0.202 Sum_probs=80.3
Q ss_pred ccccccc--ccccce-eecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceEEEceeeeecccccccccccc
Q 039394 22 WQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKI 98 (157)
Q Consensus 22 l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~ 98 (157)
.++++.| .+|.+. +.+|..+..+++|++|++++|.+++ + ..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------------~-~~~ 60 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----------------------------------I-ANL 60 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----------------------------------C-TTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----------------------------------c-hhh
Confidence 4667777 677776 5677777888888888888887763 3 567
Q ss_pred ccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec-CCCC----CCcccccCCCC
Q 039394 99 DQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK-IPSG----TKLQTLDASSY 156 (157)
Q Consensus 99 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~----~~l~~l~~~~~ 156 (157)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+.. ++++.|+++.+
T Consensus 61 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 8889999999999999987899888999999999999999873 2222 78888988765
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.4e-15 Score=110.98 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=98.4
Q ss_pred CcEEECcCCccccc-cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCC-ccee--------ecceeeeee
Q 039394 1 MEYLDLSDNQLSEE-IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYS-SILG--------DIIIVSMID 68 (157)
Q Consensus 1 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~~l~~l~ 68 (157)
|++|++++|.+++. ++..+..+++|++| .+|.+.+..+..+..+++|++|++++| .+++ .+++++.|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 46677777777654 66666777777777 566666666666777777777777777 4543 233777777
Q ss_pred cccc-cccce--E-EEceee-eeccc-cc--------cccccccccccCCCEEecCCCc-cCCCCChhhhcCCCCCeEEc
Q 039394 69 LQMV-QKKNS--I-AIINVV-VVGEL-FK--------RPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQLGLLGVLSL 133 (157)
Q Consensus 69 l~~n-~l~~~--~-~~~~~~-~l~~~-~~--------~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l 133 (157)
+++| .+.+. . .+..+. .++++ +. ..+|..+..+++|++|++++|. +.+..+..+..+++|+.|++
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 7777 66642 1 234444 44444 11 2345556677788888888887 55566667777788888888
Q ss_pred cCCc-ceec----CCCCCCcccccCCC
Q 039394 134 SNNK-LSGK----IPSGTKLQTLDASS 155 (157)
Q Consensus 134 s~N~-l~~~----~p~~~~l~~l~~~~ 155 (157)
++|. +... +...++++.|+++.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 8774 3222 22226677777654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.3e-14 Score=103.24 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=103.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
|++|++++|.+++..+ +..+++|++| ..|.+.+ ++ .+..+++|++|++++|.+++ .+++++.|++++|.
T Consensus 70 L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 70 VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc
Confidence 6789999999985443 8889999999 7777775 33 48889999999999998864 23488899999998
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
+.+...+..+..++++ +.+..| +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 146 l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 146 ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8876544455555555 333333 8889999999999999884 55 48999999999999999875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=5.5e-14 Score=110.49 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=112.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|+.|++++|.+. .++ .+..+++|+.| ..|.+.+..| +..+++|+.|++++|.+.+. +++|+.|++++|.
T Consensus 45 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 45 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC
T ss_pred CCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC
Confidence 567899999988 444 58889999999 7888886444 88999999999999998742 3489999999999
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG-- 145 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 145 (157)
+.+...+..+..++.+ +.+ + ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++. |..
T Consensus 121 l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~ 195 (605)
T 1m9s_A 121 ISDINGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG 195 (605)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred CCCCccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHcc
Confidence 9876545555555555 332 2 467788899999999999886555 78889999999999988764 322
Q ss_pred -CCcccccCCCC
Q 039394 146 -TKLQTLDASSY 156 (157)
Q Consensus 146 -~~l~~l~~~~~ 156 (157)
+.|+.|+++.+
T Consensus 196 l~~L~~L~L~~N 207 (605)
T 1m9s_A 196 LKNLDVLELFSQ 207 (605)
T ss_dssp CTTCSEEECCSE
T ss_pred CCCCCEEEccCC
Confidence 77777777653
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=6.4e-17 Score=126.27 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=101.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--cccc-------------ceeecCccCcCCCCCCEEE-ccCCccee-----
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNH-------------INGCVPIRLCYVRPVQVLD-ISYSSILG----- 59 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~-------------~~~~~p~~~~~l~~L~~L~-l~~n~~~~----- 59 (157)
|+.|+|++|.++ .+|+.++.+++|+.| .+|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 351 L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~ 429 (567)
T 1dce_A 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429 (567)
T ss_dssp SSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhh
Confidence 356788888887 778888888888887 3332 2334445555555555554 33332110
Q ss_pred -------ecc--eeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhc
Q 039394 60 -------DII--IVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQ 124 (157)
Q Consensus 60 -------~~~--~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 124 (157)
.++ .++.|++++|.+.+.+.+..+..++.+ +. .+|..++.+++|+.|++++|++.+ +| .++.
T Consensus 430 l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~ 506 (567)
T 1dce_A 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN 506 (567)
T ss_dssp HHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred hhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC
Confidence 011 344555555555544333333333333 22 689999999999999999999985 77 8899
Q ss_pred CCCCCeEEccCCcceecC-CCC----CCcccccCCCC
Q 039394 125 LGLLGVLSLSNNKLSGKI-PSG----TKLQTLDASSY 156 (157)
Q Consensus 125 l~~L~~L~ls~N~l~~~~-p~~----~~l~~l~~~~~ 156 (157)
+++|+.|++++|.+++.. |.. +.|+.|+++.+
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 999999999999999876 665 88888988765
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=2.5e-14 Score=104.86 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=97.0
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-----ecceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG-----DIIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----~~~~l~~l~l~~n~ 73 (157)
|+++++++|.+.+..+ +..+++|++| .+|.+.+.. . +..+++|++|++++|.+++ .+++++.+++++|.
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence 5678888888874433 6777888888 677766433 3 7778888888888887763 23377888888888
Q ss_pred ccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 74 KKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
+.+...+..+..++.+ +.+..|..+..+++|++|++++|.+.+..| +..+++|+.+++++|+++
T Consensus 277 l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7765434444444444 555677888999999999999999886555 889999999999999875
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=1.5e-13 Score=104.70 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=71.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee-------------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG------------------- 59 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------------------- 59 (157)
|++|++++|.+++. + +..+++|++| ..|.+.+ +| +..+++|++|++++|.+++
T Consensus 87 L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 87 LTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSC
T ss_pred CCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCc
Confidence 45666666666642 2 5555666666 4555543 22 4555555555555555442
Q ss_pred --e-----cceeeeeecccccccceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCC
Q 039394 60 --D-----IIIVSMIDLQMVQKKNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG 126 (157)
Q Consensus 60 --~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 126 (157)
. +++++.|++++|.+.+.. +..+..++.+ +.+ + .+..+++|++|++++|++.+ +| +..++
T Consensus 161 ~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 161 ITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp CCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred ccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 1 124555555555555432 2222222222 221 1 25666777777777777775 55 66777
Q ss_pred CCCeEEccCCcceecCC
Q 039394 127 LLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 127 ~L~~L~ls~N~l~~~~p 143 (157)
+|+.|++++|.+++..+
T Consensus 234 ~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TCSEEECCSSCCSCCCC
T ss_pred CCCEEEeeCCcCCCcCH
Confidence 77777777777776543
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=1.7e-13 Score=104.41 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=61.0
Q ss_pred cccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccccceEEEceeeeeccc------c
Q 039394 23 QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQKKNSIAIINVVVVGEL------F 90 (157)
Q Consensus 23 ~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l~~~~~~~~~~~l~~~------~ 90 (157)
++|++| .+|.+.+ +| .++.+++|++|++++|.+++ +| +++.|++++|.+.+.+.+..+..++++ +
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 456666 5666664 55 47778888888888887764 32 677777777777765444444444433 1
Q ss_pred ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCccee
Q 039394 91 KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
. .+|.. ..+|++|++++|.+. .+|. ++.+++|+.|++++|.+.+
T Consensus 208 ~-~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 208 K-KLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp S-SCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred C-cCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 1 12211 124555555555544 4442 4555555555555555543
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=3.4e-13 Score=102.81 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=106.4
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee----ecceeeeeecccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG----DIIIVSMIDLQMVQK 74 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~l~~l~l~~n~l 74 (157)
|++|++++|.+++ +| .+..+++|++| ..|.+.+. | ++.+++|++|++++|.+++ .+++++.|++++|.+
T Consensus 44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence 5789999999995 45 68889999999 78888763 3 7889999999999998874 234889999999998
Q ss_pred cceEEEceeeeeccc------cccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC--C
Q 039394 75 KNSIAIINVVVVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--T 146 (157)
Q Consensus 75 ~~~~~~~~~~~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--~ 146 (157)
.+.. +..+..++++ +.+ + .+..+++|++|++++|...+.+ .+..+++|+.|++++|.+++. |-. +
T Consensus 119 ~~l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~l~~l~ 191 (457)
T 3bz5_A 119 TKLD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-DVSQNK 191 (457)
T ss_dssp SCCC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-CCTTCT
T ss_pred Ceec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-ccccCC
Confidence 8653 4444444444 332 2 2667778888888888666565 367788888888888888763 322 6
Q ss_pred CcccccCCCC
Q 039394 147 KLQTLDASSY 156 (157)
Q Consensus 147 ~l~~l~~~~~ 156 (157)
.++.|+++.+
T Consensus 192 ~L~~L~l~~N 201 (457)
T 3bz5_A 192 LLNRLNCDTN 201 (457)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECcCC
Confidence 7777777654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.6e-13 Score=97.45 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=97.5
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|++|++++|.+++. ++ +..+++|++| ..|.+.+ +|.. .. ++|++|++++|.+++. +++++.|++++|+
T Consensus 65 L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 65 LKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred CCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCc
Confidence 68999999999954 44 8899999999 7888875 4443 33 9999999999998742 3489999999999
Q ss_pred ccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceec
Q 039394 74 KKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
+. .++ .+..+++|++|++++|++.+. ..+..+++|+.|++++|++.+.
T Consensus 140 i~-----------------~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 140 LK-----------------SIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CC-----------------BCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC-----------------CCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 98 344 688899999999999999865 6788999999999999998765
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=7.8e-16 Score=114.65 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred CcEEECcCC---ccccccCcch-------hcccccccc--cccccee----ecCccCcCCCCCCEEEccCCcceee----
Q 039394 1 MEYLDLSDN---QLSEEIPHCS-------RYWQSLKVL--KSNHING----CVPIRLCYVRPVQVLDISYSSILGD---- 60 (157)
Q Consensus 1 L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L--~~n~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~---- 60 (157)
|++|++++| ++.+.+|..+ ..+++|++| ..|.+.+ .+|..+..+++|++|++++|.+.+.
T Consensus 62 L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 141 (386)
T 2ca6_A 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141 (386)
T ss_dssp CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH
Confidence 455666664 2333344333 455566666 5555554 2444555566666666666655311
Q ss_pred ----c------------ceeeeeecccccccceE------EEceeeeeccc------ccc-----ccccccccccCCCEE
Q 039394 61 ----I------------IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR-----PIPTKIDQLTMLHAL 107 (157)
Q Consensus 61 ----~------------~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~-----~~p~~~~~l~~L~~L 107 (157)
+ ++++.|++++|.+.... .+..+..++.+ +.. ..|..+..+++|++|
T Consensus 142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L 221 (386)
T 2ca6_A 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE
Confidence 0 45555666666554211 12222222222 110 122244455555555
Q ss_pred ecCCCccC----CCCChhhhcCCCCCeEEccCCccee
Q 039394 108 DLSRNQPI----GKIPEGISQLGLLGVLSLSNNKLSG 140 (157)
Q Consensus 108 ~l~~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~~ 140 (157)
++++|.+. +.+|..+..+++|+.|++++|.+++
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 55555553 3444555555555555555555543
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.2e-15 Score=112.26 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred cccccccccCCCEEecCCCccCCC----CChhhhc--CCCCCeEEccCCccee
Q 039394 94 IPTKIDQLTMLHALDLSRNQPIGK----IPEGISQ--LGLLGVLSLSNNKLSG 140 (157)
Q Consensus 94 ~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~--l~~L~~L~ls~N~l~~ 140 (157)
+|..+..+++|++|++++|.+.+. ++..+.. +++|+.|++++|.+++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 344444444555555555544432 2333322 4445555555554444
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=3.9e-16 Score=106.44 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=98.9
Q ss_pred cEEECcCCccccccCc------chhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeee
Q 039394 2 EYLDLSDNQLSEEIPH------CSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSM 66 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~------~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~ 66 (157)
+.++++.+.+.+.+|. .+..+++|++| .+|.+.+ +| .+..+++|++|++++|.++ .+| +++.
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence 4456777777777665 88999999999 7788775 66 7888999999999999887 333 8899
Q ss_pred eecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcceecCCC
Q 039394 67 IDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 67 l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
|++++|.+. .+| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|.
T Consensus 98 L~L~~N~l~-----------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 98 LWISYNQIA-----------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEEEEECC-----------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred EECcCCcCC-----------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999987 345 57888999999999999874322 4788999999999999999877554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1e-13 Score=91.93 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=97.7
Q ss_pred cccccccc--ccccce-eecCccCcCCCCCCEEEccCCcceee-----cceeeeeecccccccceEEEceeeeecccccc
Q 039394 21 YWQSLKVL--KSNHIN-GCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQKKNSIAIINVVVVGELFKR 92 (157)
Q Consensus 21 ~l~~L~~L--~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~ 92 (157)
..++|++| .+|.+. +.+|..+..+++|++|++++|.+++. +++++.|++++|.+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~---------------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG---------------- 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS----------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch----------------
Confidence 34778888 778777 67888889999999999999988743 3488999999999973
Q ss_pred ccccccccccCCCEEecCCCccCCCC-ChhhhcCCCCCeEEccCCcceecCC-------CCCCcccccCCCC
Q 039394 93 PIPTKIDQLTMLHALDLSRNQPIGKI-PEGISQLGLLGVLSLSNNKLSGKIP-------SGTKLQTLDASSY 156 (157)
Q Consensus 93 ~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p-------~~~~l~~l~~~~~ 156 (157)
.+|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++++..+ ..++++.||++.+
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 36777778999999999999988532 2788999999999999999986654 1278888887654
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=5.9e-15 Score=109.18 Aligned_cols=140 Identities=19% Similarity=0.143 Sum_probs=71.3
Q ss_pred CcEEECcCCccccccC----cchhccc-ccccc--ccccceeecCccCcCC-----CCCCEEEccCCcceeec-------
Q 039394 1 MEYLDLSDNQLSEEIP----HCSRYWQ-SLKVL--KSNHINGCVPIRLCYV-----RPVQVLDISYSSILGDI------- 61 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L--~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~~~~~~------- 61 (157)
|++|++++|.+++..+ ..+..++ +|++| .+|.+.+..+..+..+ ++|++|++++|.+++..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4566777777664444 4555555 66666 5666655444444443 66666666666664321
Q ss_pred -----ceeeeeecccccccceE--EE----ce-eeeeccc------ccc----cccccccccc-CCCEEecCCCccCCCC
Q 039394 62 -----IIVSMIDLQMVQKKNSI--AI----IN-VVVVGEL------FKR----PIPTKIDQLT-MLHALDLSRNQPIGKI 118 (157)
Q Consensus 62 -----~~l~~l~l~~n~l~~~~--~~----~~-~~~l~~~------~~~----~~p~~~~~l~-~L~~L~l~~N~l~~~~ 118 (157)
++++.|++++|.+.+.. .+ .. ...++++ +.. .++..+..++ +|++|++++|++.+..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 35666666666665543 11 11 1223333 221 1222233333 5666666666655444
Q ss_pred Chhhh----cC-CCCCeEEccCCccee
Q 039394 119 PEGIS----QL-GLLGVLSLSNNKLSG 140 (157)
Q Consensus 119 p~~~~----~l-~~L~~L~ls~N~l~~ 140 (157)
+..+. .+ ++|++|++++|.++.
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 43332 23 356666666665554
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=2.2e-14 Score=104.71 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=101.3
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccc-ccee-ecCccCcCCCCCCEEEccCC-ccee--------ecc-eeee
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSN-HING-CVPIRLCYVRPVQVLDISYS-SILG--------DII-IVSM 66 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n-~~~~-~~p~~~~~l~~L~~L~l~~n-~~~~--------~~~-~l~~ 66 (157)
|++|++++|.+++..+..++.+++|++| .+| .+.+ .++..+..+++|++|++++| .+++ .+| +++.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 6789999999988888888889999999 666 4554 35666788899999999999 7763 345 8899
Q ss_pred eeccccc--ccc--eE-EEceeeeeccc-------cccccccccccccCCCEEecCCCc-cCCCCChhhhcCCCCCeEEc
Q 039394 67 IDLQMVQ--KKN--SI-AIINVVVVGEL-------FKRPIPTKIDQLTMLHALDLSRNQ-PIGKIPEGISQLGLLGVLSL 133 (157)
Q Consensus 67 l~l~~n~--l~~--~~-~~~~~~~l~~~-------~~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l 133 (157)
|++++|. +.+ .. .+..+..++++ +....+..+..+++|++|++++|. +.......+..+++|+.|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 9999984 432 12 33344444444 344567788899999999999996 22222235788999999999
Q ss_pred cCC
Q 039394 134 SNN 136 (157)
Q Consensus 134 s~N 136 (157)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 998
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=2.8e-13 Score=105.76 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=19.4
Q ss_pred CEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCC
Q 039394 105 HALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIP 143 (157)
Q Consensus 105 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 143 (157)
+.|++++|++. .+|..+..+++|+.|++++|++++.+|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 55555555544 345544445555555555555554443
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=2e-13 Score=100.54 Aligned_cols=76 Identities=8% Similarity=-0.052 Sum_probs=39.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecC-ccCcCCCCCCE-EEccCCcceee-------cceeeeeec
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVP-IRLCYVRPVQV-LDISYSSILGD-------IIIVSMIDL 69 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p-~~~~~l~~L~~-L~l~~n~~~~~-------~~~l~~l~l 69 (157)
+++|+|++|+++...+.+|..+++|++| ..|.+.+.+| ..|..++++.+ +.++.|++... +++|+.+++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 3566777777764333456666677766 5555543333 34455555443 33344544322 125555555
Q ss_pred ccccccc
Q 039394 70 QMVQKKN 76 (157)
Q Consensus 70 ~~n~l~~ 76 (157)
++|.+..
T Consensus 112 ~~n~l~~ 118 (350)
T 4ay9_X 112 SNTGIKH 118 (350)
T ss_dssp EEECCSS
T ss_pred ccccccc
Confidence 5555543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.5e-13 Score=110.15 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=84.6
Q ss_pred cEEECcCCccccccCcchhcccccccc-------ccccceeecCccCcCCCCCCEEEccCCccee------ecceeeeee
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL-------KSNHINGCVPIRLCYVRPVQVLDISYSSILG------DIIIVSMID 68 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L-------~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~l~~l~ 68 (157)
+.|+|.+|.+.. .+........|..+ ..|.+. ..++.+..++.|+.|++++|.+.. .+++|+.|+
T Consensus 176 ~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 176 PKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 356777787774 44444333333333 223333 567889999999999999999862 223889999
Q ss_pred cccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---
Q 039394 69 LQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG--- 145 (157)
Q Consensus 69 l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--- 145 (157)
+++|.+. .+|..+..+++|++|++++|++. .+|..++.+++|+.|++++|.++ .+|..
T Consensus 254 Ls~N~l~-----------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 254 LNGNSLT-----------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN 314 (727)
T ss_dssp CTTSCCS-----------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred eeCCcCc-----------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence 9999997 68999999999999999999988 88999999999999999999997 66765
Q ss_pred -CCcccccCCCC
Q 039394 146 -TKLQTLDASSY 156 (157)
Q Consensus 146 -~~l~~l~~~~~ 156 (157)
+.|+.|+++.+
T Consensus 315 l~~L~~L~L~~N 326 (727)
T 4b8c_D 315 LCNLQFLGVEGN 326 (727)
T ss_dssp CTTCCCEECTTS
T ss_pred CCCccEEeCCCC
Confidence 78889998875
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=2.6e-13 Score=105.92 Aligned_cols=122 Identities=23% Similarity=0.327 Sum_probs=92.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc----eeeeeecccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII----IVSMIDLQMVQK 74 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~l~~l~l~~n~l 74 (157)
|++|++++|.+++ +|. +.. +|++| ..|.+.+ +|. .+++|++|++++|.+++ +| +++.|++++|.+
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQL 172 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCC
Confidence 5678888888885 666 543 78888 6777775 555 57888888888888774 33 778888888888
Q ss_pred cceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCC-------CeEEccCCcceecCCCC--
Q 039394 75 KNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLL-------GVLSLSNNKLSGKIPSG-- 145 (157)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-------~~L~ls~N~l~~~~p~~-- 145 (157)
. .+|. +. ++|+.|++++|++. .+|. +.. +| +.|++++|.++ .+|..
T Consensus 173 ~-----------------~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 173 T-----------------FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp S-----------------CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred C-----------------Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence 7 4666 55 89999999999988 6776 554 67 99999999998 46664
Q ss_pred --CCcccccCCCC
Q 039394 146 --TKLQTLDASSY 156 (157)
Q Consensus 146 --~~l~~l~~~~~ 156 (157)
++++.|+++.+
T Consensus 228 ~l~~L~~L~L~~N 240 (571)
T 3cvr_A 228 SLDPTCTIILEDN 240 (571)
T ss_dssp GSCTTEEEECCSS
T ss_pred cCCCCCEEEeeCC
Confidence 78888888765
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=2.5e-14 Score=105.86 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=77.8
Q ss_pred CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCcc----CcCC-CCCCEEEccCCcceeec-------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIR----LCYV-RPVQVLDISYSSILGDI------- 61 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~----~~~l-~~L~~L~l~~n~~~~~~------- 61 (157)
|++|++++|.+++..+..+..+ ++|++| .+|.+.+..+.. +..+ ++|++|++++|.+++..
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 4667777777776656555554 677777 666666544443 2333 66777777777665321
Q ss_pred -----ceeeeeecccccccceE------EEceee-eeccc------cccccccc----cccc-cCCCEEecCCCccCCC-
Q 039394 62 -----IIVSMIDLQMVQKKNSI------AIINVV-VVGEL------FKRPIPTK----IDQL-TMLHALDLSRNQPIGK- 117 (157)
Q Consensus 62 -----~~l~~l~l~~n~l~~~~------~~~~~~-~l~~~------~~~~~p~~----~~~l-~~L~~L~l~~N~l~~~- 117 (157)
.+++.|++++|.+.+.. .+.... .++++ +....+.. +..+ ++|++|++++|.+.+.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 26666777777666422 111111 23333 33333322 2233 4677777777776642
Q ss_pred ---CChhhhc-CCCCCeEEccCCcceec
Q 039394 118 ---IPEGISQ-LGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 118 ---~p~~~~~-l~~L~~L~ls~N~l~~~ 141 (157)
++..+.. .++|++|++++|.+++.
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 3444444 34677777777776553
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=1.5e-12 Score=95.55 Aligned_cols=101 Identities=23% Similarity=0.148 Sum_probs=78.3
Q ss_pred EEECcCC-ccccccCcchhcccccccc--cc-ccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394 3 YLDLSDN-QLSEEIPHCSRYWQSLKVL--KS-NHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI 78 (157)
Q Consensus 3 ~L~L~~n-~l~~~~p~~~~~l~~L~~L--~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~ 78 (157)
.++++++ +++ .+|. +..+.+|++| .+ |.+.+..+..|..+++|++|++++|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~------------------- 70 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF------------------- 70 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-------------------
Confidence 4577777 777 5777 8888888888 54 78887777788888888888888888775
Q ss_pred EEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcce
Q 039394 79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
..|..|..+++|++|++++|++.+..+..+..+. |+.|++++|++.
T Consensus 71 --------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 71 --------------VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------------ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------------eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4566778888899999999998865555666555 889999988875
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=5.5e-13 Score=98.22 Aligned_cols=151 Identities=20% Similarity=0.196 Sum_probs=95.6
Q ss_pred CcEEECcCCccccccC-cchhcccccccc---ccccceeecCccCcCCCCCCEEEccCCcceeecc-------eeeeeec
Q 039394 1 MEYLDLSDNQLSEEIP-HCSRYWQSLKVL---KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII-------IVSMIDL 69 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L---~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------~l~~l~l 69 (157)
|++|+|++|.+.+.+| .+|..+++++.+ ..|.+....|..+..+++|++|++++|.+.+..+ .+..+++
T Consensus 56 L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 6788999998865555 456777777654 5677887777888888999999998888764322 4455555
Q ss_pred cc-ccccceE--EEceee-eeccc------cccccccccccccCCCEEecCCCccCCCCC-hhhhcCCCCCeEEccCCcc
Q 039394 70 QM-VQKKNSI--AIINVV-VVGEL------FKRPIPTKIDQLTMLHALDLSRNQPIGKIP-EGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 70 ~~-n~l~~~~--~~~~~~-~l~~~------~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l 138 (157)
.+ +.+.... .+..+. .+..+ +. .+|.......+++.+++++++..+.+| +.|..+++|+.||+++|++
T Consensus 136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp ESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred ccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 44 3444332 222211 11111 22 445555555678888887643344555 4678899999999999998
Q ss_pred eecCCCC-CCccccc
Q 039394 139 SGKIPSG-TKLQTLD 152 (157)
Q Consensus 139 ~~~~p~~-~~l~~l~ 152 (157)
+...+.. ..++.|.
T Consensus 215 ~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 215 HSLPSYGLENLKKLR 229 (350)
T ss_dssp CCCCSSSCTTCCEEE
T ss_pred CccChhhhccchHhh
Confidence 8543332 4444443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.4e-12 Score=87.19 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=93.3
Q ss_pred chhcccccccc--ccccceeecCccCcCCC-CCCEEEccCCcceee-----cceeeeeecccccccceEEEceeeeeccc
Q 039394 18 CSRYWQSLKVL--KSNHINGCVPIRLCYVR-PVQVLDISYSSILGD-----IIIVSMIDLQMVQKKNSIAIINVVVVGEL 89 (157)
Q Consensus 18 ~~~~l~~L~~L--~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~l~~~~~~~~~~~l~~~ 89 (157)
.+..+.+|+.| .+|.+.. +|. +..+. +|++|++++|.+++. +++++.|++++|.+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-------------- 77 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-------------- 77 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC--------------
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc--------------
Confidence 45667888998 7787774 454 45554 999999999998753 348899999999997
Q ss_pred cccccccc-cccccCCCEEecCCCccCCCCCh--hhhcCCCCCeEEccCCcceecCCCC--------CCcccccCCCC
Q 039394 90 FKRPIPTK-IDQLTMLHALDLSRNQPIGKIPE--GISQLGLLGVLSLSNNKLSGKIPSG--------TKLQTLDASSY 156 (157)
Q Consensus 90 ~~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~--------~~l~~l~~~~~ 156 (157)
.+|.. +..+++|++|++++|++. .+|. .+..+++|+.|++++|++.. +|.. +.++.+|++.+
T Consensus 78 ---~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 78 ---RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ---EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred ---ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 35544 488999999999999985 6776 78999999999999999974 4541 78888887654
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=3.9e-12 Score=100.25 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=31.3
Q ss_pred cccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcceecCCC
Q 039394 100 QLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPS 144 (157)
Q Consensus 100 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 144 (157)
.+++|+.|++++|++. .+|..+..+++|+.|++++|++++.+|.
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4566777777777766 6677777777777777777777665544
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.31 E-value=9.2e-14 Score=105.31 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=26.6
Q ss_pred CcEEECcCCccccc----cCcchhcccccccc--ccccceeec-----CccCcCCCCCCEEEccCCcce
Q 039394 1 MEYLDLSDNQLSEE----IPHCSRYWQSLKVL--KSNHINGCV-----PIRLCYVRPVQVLDISYSSIL 58 (157)
Q Consensus 1 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L--~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~ 58 (157)
|++|++++|.+++. ++..+..+++|++| ..|.+.... +..+..+++|++|++++|.++
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 34555555555532 34444455555555 444443211 111223455555555555544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=6.6e-14 Score=95.37 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=97.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceee-----cceeeeeeccccc
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGD-----IIIVSMIDLQMVQ 73 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~l~~l~l~~n~ 73 (157)
|++|++++|.+++ +| .+..+++|++| ..|.+. .+|..+..+++|++|++++|.+++. +++++.|++++|.
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEE
T ss_pred CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCc
Confidence 6789999999995 67 89999999999 778777 6777777889999999999998752 3389999999999
Q ss_pred ccceEEEceeeeeccccccccc--cccccccCCCEEecCCCccCCCCCh----------hhhcCCCCCeEEccCCcce
Q 039394 74 KKNSIAIINVVVVGELFKRPIP--TKIDQLTMLHALDLSRNQPIGKIPE----------GISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 74 l~~~~~~~~~~~l~~~~~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~ 139 (157)
+.+ ++ ..+..+++|+++++++|.+.+..|. .+..+++|+.|| +|+++
T Consensus 127 i~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITN-----------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCC-----------------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCc-----------------hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 973 33 3688899999999999999776554 378899999987 56554
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=1.9e-11 Score=96.44 Aligned_cols=50 Identities=18% Similarity=0.459 Sum_probs=23.0
Q ss_pred cEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcce
Q 039394 2 EYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSIL 58 (157)
Q Consensus 2 ~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 58 (157)
+.|++++|.++ .+|..+. ++|++| .+|.+. .+|. .+++|++|++++|.++
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT 94 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC
Confidence 34555555555 4444333 445555 444444 2333 2344555555555443
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.27 E-value=6.5e-13 Score=100.64 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=93.5
Q ss_pred CcEEECcCCcccccc-----Ccchhcccccccc--ccccceee----cCccCcCCCCCCEEEccCCcceee---------
Q 039394 1 MEYLDLSDNQLSEEI-----PHCSRYWQSLKVL--KSNHINGC----VPIRLCYVRPVQVLDISYSSILGD--------- 60 (157)
Q Consensus 1 L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~--------- 60 (157)
|++|++++|.+.+.- +..+..+++|++| ..|.+... ++..+..+++|++|++++|.+.+.
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 578888888877532 1222346788888 67776643 566677788888888888887521
Q ss_pred ---cceeeeeecccccccceE------EEceeeeeccc------ccccccccccc-----ccCCCEEecCCCccCC----
Q 039394 61 ---IIIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKRPIPTKIDQ-----LTMLHALDLSRNQPIG---- 116 (157)
Q Consensus 61 ---~~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~~~p~~~~~-----l~~L~~L~l~~N~l~~---- 116 (157)
.++++.|++++|.+.+.. .+..+..++++ +....+..+.. .++|++|++++|.+.+
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence 137888888888877542 22233333333 22222332322 5688889999888775
Q ss_pred CCChhhhcCCCCCeEEccCCcceec
Q 039394 117 KIPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 117 ~~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
.+|..+..+++|++|++++|++++.
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHhCCCccEEECCCCCCCHH
Confidence 6777888888899999998888654
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=2.4e-11 Score=80.86 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=72.2
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI 78 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~ 78 (157)
|++|++++|.+++..|..+..+++|++| .+|.+.+..+..+..+++|++|++++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~------------------- 92 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS------------------- 92 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-------------------
Confidence 5789999999998888899999999999 8999997777778999999999999999874
Q ss_pred EEceeeeeccccccccccccccccCCCEEecCCCccCCC
Q 039394 79 AIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGK 117 (157)
Q Consensus 79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~ 117 (157)
..+..+..+++|++|++++|.+...
T Consensus 93 --------------~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 93 --------------IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp --------------CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred --------------eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 2334578889999999999988754
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=3.7e-11 Score=80.26 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=71.1
Q ss_pred CcEEECcCCccccccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecceeeeeecccccccceE
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDIIIVSMIDLQMVQKKNSI 78 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~l~~l~l~~n~l~~~~ 78 (157)
|++|++++|++++..|..+..+++|++| ..|.+.+..+..+..+++|++|++++|.+++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~------------------- 95 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS------------------- 95 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-------------------
Confidence 5789999999998888899999999999 8899987666667899999999999999873
Q ss_pred EEceeeeecccccccccc-ccccccCCCEEecCCCccCCC
Q 039394 79 AIINVVVVGELFKRPIPT-KIDQLTMLHALDLSRNQPIGK 117 (157)
Q Consensus 79 ~~~~~~~l~~~~~~~~p~-~~~~l~~L~~L~l~~N~l~~~ 117 (157)
+|. .+..+++|++|++++|.+...
T Consensus 96 ---------------l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 96 ---------------IPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ---------------CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ---------------eCHHHhccccCCCEEEeCCCCcccc
Confidence 443 478889999999999998743
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=9.5e-11 Score=85.92 Aligned_cols=90 Identities=19% Similarity=0.067 Sum_probs=74.8
Q ss_pred cceeecCccCcCCCCCCEEEccC-CcceeecceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecC
Q 039394 32 HINGCVPIRLCYVRPVQVLDISY-SSILGDIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLS 110 (157)
Q Consensus 32 ~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~ 110 (157)
.+. .+|. +..+++|++|++++ |.+.+ ..+..+..+++|+.|+++
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~---------------------------------~~~~~~~~l~~L~~L~l~ 64 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQH---------------------------------LELRDLRGLGELRNLTIV 64 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCE---------------------------------ECGGGSCSCCCCSEEECC
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCC---------------------------------cChhHhccccCCCEEECC
Confidence 666 4777 88899999999986 88874 345678999999999999
Q ss_pred CCccCCCCChhhhcCCCCCeEEccCCcceecCCCC---CCcccccCCCC
Q 039394 111 RNQPIGKIPEGISQLGLLGVLSLSNNKLSGKIPSG---TKLQTLDASSY 156 (157)
Q Consensus 111 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~---~~l~~l~~~~~ 156 (157)
+|++.+..|..|..+++|+.|++++|.|++..+.. ..|+.|++..+
T Consensus 65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 99999988999999999999999999999765544 34777877654
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.07 E-value=4.3e-12 Score=94.37 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=68.2
Q ss_pred CcEEECcCCccccccCcchhcc-----cccccc--ccccceeecCccC-cCCCCCCEEEccCCcceee------------
Q 039394 1 MEYLDLSDNQLSEEIPHCSRYW-----QSLKVL--KSNHINGCVPIRL-CYVRPVQVLDISYSSILGD------------ 60 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L--~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~------------ 60 (157)
|+.|++++|.++......+... .+|+.| ..|.+.......+ ..+++|++|++++|.++..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 4567777777764433333322 466666 5555543222222 2245666777777766421
Q ss_pred cceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCC----CCh
Q 039394 61 IIIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGK----IPE 120 (157)
Q Consensus 61 ~~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~----~p~ 120 (157)
.+.++.|++++|.+.+.. .+.....++++ +.. .++..+...++|+.|++++|.+... ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 135666777777665321 11111112222 111 1233444555666666666665432 233
Q ss_pred hhhcCCCCCeEEccCCcce
Q 039394 121 GISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 121 ~~~~l~~L~~L~ls~N~l~ 139 (157)
.+...++|++|++++|.++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 3444566666666666654
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=6.2e-10 Score=81.19 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=42.5
Q ss_pred CcEEECcCCccc--------------------cccCcchhc--------ccccccc-ccccceeecCccCcCCCCCCEEE
Q 039394 1 MEYLDLSDNQLS--------------------EEIPHCSRY--------WQSLKVL-KSNHINGCVPIRLCYVRPVQVLD 51 (157)
Q Consensus 1 L~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~ 51 (157)
|++|||++|++. ...+.+|.. +.+|+.+ -.+.+....+.+|..+++|+.++
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEE
T ss_pred CeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEE
Confidence 678899999887 122345666 8899988 33377766777899999999999
Q ss_pred ccCCcc
Q 039394 52 ISYSSI 57 (157)
Q Consensus 52 l~~n~~ 57 (157)
++.|.+
T Consensus 131 l~~n~i 136 (329)
T 3sb4_A 131 IRKKTA 136 (329)
T ss_dssp BCCSSC
T ss_pred cCCCCc
Confidence 988865
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=7.9e-11 Score=87.57 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=69.2
Q ss_pred CcEEECcCCccccccCcch-hcccccccc--ccccceeecCccC-----cCCCCCCEEEccCCccee-----------ec
Q 039394 1 MEYLDLSDNQLSEEIPHCS-RYWQSLKVL--KSNHINGCVPIRL-----CYVRPVQVLDISYSSILG-----------DI 61 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L--~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~-----------~~ 61 (157)
|++|+|++|.++......+ ..+++|+.| .+|.+.......+ ...++|++|++++|.++. ..
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 182 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence 3567777777664322222 335566666 5565543322222 234566777777776642 12
Q ss_pred ceeeeeecccccccceE------EEceeeeeccc------ccc----ccccccccccCCCEEecCCCccCCCCChhhhcC
Q 039394 62 IIVSMIDLQMVQKKNSI------AIINVVVVGEL------FKR----PIPTKIDQLTMLHALDLSRNQPIGKIPEGISQL 125 (157)
Q Consensus 62 ~~l~~l~l~~n~l~~~~------~~~~~~~l~~~------~~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 125 (157)
++++.|++++|.+.+.. .+.....++++ +.. .++..+...++|++|++++|.+.......+..+
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 36666777777665422 22223333333 211 234456677899999999999876555555444
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=5.3e-10 Score=87.09 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=36.5
Q ss_pred cccccccccCCCEEecCCCccCCC-CChhhhcCCCCCeEEccCCcceec
Q 039394 94 IPTKIDQLTMLHALDLSRNQPIGK-IPEGISQLGLLGVLSLSNNKLSGK 141 (157)
Q Consensus 94 ~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 141 (157)
++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|+++..
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 455567788999999999987644 344456788999999999987654
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.72 E-value=8.8e-10 Score=85.84 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=70.5
Q ss_pred CcEEECcCCc-ccc-ccCcchhcccccccc--ccccceee----cCccCcCCCCCCEEEccCCcce----e-------ec
Q 039394 1 MEYLDLSDNQ-LSE-EIPHCSRYWQSLKVL--KSNHINGC----VPIRLCYVRPVQVLDISYSSIL----G-------DI 61 (157)
Q Consensus 1 L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~----~-------~~ 61 (157)
|++|++++|. ++. .++.....+++|++| ..|.+.+. ++.....+++|++|++++|.+. + ..
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 4667776665 211 122223456777777 55555433 2223445667777777777664 1 12
Q ss_pred ceeeeeecccccccceE-EEceeeeeccc--------------------------------cccccccccccccCCCEEe
Q 039394 62 IIVSMIDLQMVQKKNSI-AIINVVVVGEL--------------------------------FKRPIPTKIDQLTMLHALD 108 (157)
Q Consensus 62 ~~l~~l~l~~n~l~~~~-~~~~~~~l~~~--------------------------------~~~~~p~~~~~l~~L~~L~ 108 (157)
++++.|++++|.+.+.. .+..+..++++ ....+|..+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 36677777766655432 11111111111 1223455566677777777
Q ss_pred cCCCccCCCCC-hhhhcCCCCCeEEcc
Q 039394 109 LSRNQPIGKIP-EGISQLGLLGVLSLS 134 (157)
Q Consensus 109 l~~N~l~~~~p-~~~~~l~~L~~L~ls 134 (157)
+++|.+.+... ..+..+++|+.|+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 77777543322 334566677777766
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.63 E-value=6.1e-09 Score=81.06 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=40.9
Q ss_pred CcEEECcCCccccccCcchh-cccccccc--ccc-cceee-cCccCcCCCCCCEEEccCCccee-----------eccee
Q 039394 1 MEYLDLSDNQLSEEIPHCSR-YWQSLKVL--KSN-HINGC-VPIRLCYVRPVQVLDISYSSILG-----------DIIIV 64 (157)
Q Consensus 1 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L--~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~~~~-----------~~~~l 64 (157)
|++|++++|.+++..+..+. .+++|++| ..| .+... ++.....+++|++|++++|.+++ ..+++
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 45667777766655554453 46667776 344 22221 33333456777777777776542 12266
Q ss_pred eeeeccccc
Q 039394 65 SMIDLQMVQ 73 (157)
Q Consensus 65 ~~l~l~~n~ 73 (157)
+.|++++|.
T Consensus 187 ~~L~l~~~~ 195 (594)
T 2p1m_B 187 VSLNISCLA 195 (594)
T ss_dssp CEEECTTCC
T ss_pred cEEEecccC
Confidence 667766665
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=1.9e-07 Score=66.29 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=56.4
Q ss_pred cceeeeeecccccccceEEEceeeeeccccccccccccccccCCCEEecCCCccCCCCChhhhcCC--CCCeEEccCCcc
Q 039394 61 IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLG--LLGVLSLSNNKL 138 (157)
Q Consensus 61 ~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~ls~N~l 138 (157)
+|.++.|++++|.+.+. ..+|..+..+++|+.|++++|++.+. ..+..+. +|++|++++|++
T Consensus 169 l~~L~~L~Ls~N~l~~l--------------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRL--------------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCC--------------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCC--------------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence 45777777888877632 12456667889999999999998854 3344444 899999999999
Q ss_pred eecCCCC-----------CCcccccCC
Q 039394 139 SGKIPSG-----------TKLQTLDAS 154 (157)
Q Consensus 139 ~~~~p~~-----------~~l~~l~~~ 154 (157)
.+.+|.. ++|+.||-.
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred ccccCcchhHHHHHHHHCcccCeECCc
Confidence 8877632 777777754
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=3.5e-07 Score=66.54 Aligned_cols=92 Identities=7% Similarity=-0.085 Sum_probs=47.1
Q ss_pred ccccccc--ccccceeecCccCcCCCCCCEEEccCCcceeecc--------eee-eeecccccccceEEEceeeeecccc
Q 039394 22 WQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILGDII--------IVS-MIDLQMVQKKNSIAIINVVVVGELF 90 (157)
Q Consensus 22 l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------~l~-~l~l~~n~l~~~~~~~~~~~l~~~~ 90 (157)
+.+|+.+ ..|.+....+..|..+++|+.+++..| ++. ++ +|+ .+++.. .+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~--------------- 286 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVT--------------- 286 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCC---------------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cce---------------
Confidence 5566666 555566555556666777777776665 331 10 222 222222 111
Q ss_pred ccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEE
Q 039394 91 KRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLS 132 (157)
Q Consensus 91 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 132 (157)
...+.+|..|++|+.++++.|++....+.+|..+++|+.++
T Consensus 287 -~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 -AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 02234555566666666666655544444556666665554
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.49 E-value=4.2e-09 Score=82.00 Aligned_cols=56 Identities=14% Similarity=0.021 Sum_probs=33.6
Q ss_pred ccCCCEEecCCCccCCCCChhh-hcCCCCCeEEccCCcceecCCC-----CCCcccccCCCC
Q 039394 101 LTMLHALDLSRNQPIGKIPEGI-SQLGLLGVLSLSNNKLSGKIPS-----GTKLQTLDASSY 156 (157)
Q Consensus 101 l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-----~~~l~~l~~~~~ 156 (157)
+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..+. .++++.|+++.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 6677777777777654444443 5577777777777776432221 156666666543
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=6e-08 Score=65.20 Aligned_cols=111 Identities=10% Similarity=-0.047 Sum_probs=77.9
Q ss_pred cchhcccccccc--ccc-ccee----ecCccCcCCCCCCEEEccCCcceee-----------cceeeeeecccccccceE
Q 039394 17 HCSRYWQSLKVL--KSN-HING----CVPIRLCYVRPVQVLDISYSSILGD-----------IIIVSMIDLQMVQKKNSI 78 (157)
Q Consensus 17 ~~~~~l~~L~~L--~~n-~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~-----------~~~l~~l~l~~n~l~~~~ 78 (157)
..+...++|++| ..| .+.. .+...+...++|++|++++|.+... .++++.|++++|.+.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 344556777777 555 5543 2344566678899999999988531 137888999999887420
Q ss_pred EEceeeeeccccccccccccccccCCCEEec--CCCccCCC----CChhhhcCCCCCeEEccCCcce
Q 039394 79 AIINVVVVGELFKRPIPTKIDQLTMLHALDL--SRNQPIGK----IPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 79 ~~~~~~~l~~~~~~~~p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
...+...+...++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 110 ------------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ------------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ------------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ------------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 0023456777789999999 88998754 4455666789999999999875
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.7e-07 Score=66.59 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=54.4
Q ss_pred cCCCCCCEEEccCCccee---------ecceeeeeecccccccceEEEceeeeecccccccccccccccc--CCCEEecC
Q 039394 42 CYVRPVQVLDISYSSILG---------DIIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLT--MLHALDLS 110 (157)
Q Consensus 42 ~~l~~L~~L~l~~n~~~~---------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~--~L~~L~l~ 110 (157)
..+++|+.|++++|.+++ .+|+|+.|++++|.+.+ + ..+..+. .|++|+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-----------------~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-----------------E-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-----------------G-GGGGGGTTSCCSEEECT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-----------------c-hhhhhcccCCcceEEcc
Confidence 456788888888888765 23478888888888873 2 2234444 89999999
Q ss_pred CCccCCCCCh-------hhhcCCCCCeEE
Q 039394 111 RNQPIGKIPE-------GISQLGLLGVLS 132 (157)
Q Consensus 111 ~N~l~~~~p~-------~~~~l~~L~~L~ 132 (157)
+|.+.+.+|+ .+..+++|+.||
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999887763 477899999887
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=3e-07 Score=61.73 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=78.6
Q ss_pred cCccCcCCCCCCEEEccCC-cceee-----------cceeeeeecccccccceEEEceeeeeccccccccccccccccCC
Q 039394 37 VPIRLCYVRPVQVLDISYS-SILGD-----------IIIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTML 104 (157)
Q Consensus 37 ~p~~~~~l~~L~~L~l~~n-~~~~~-----------~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L 104 (157)
+...+...+.|++|++++| .+... .++++.|++++|.+.+.. ...+...+...++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g------------~~~l~~~L~~n~~L 95 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV------------AFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH------------HHHHHHHHHHCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH------------HHHHHHHHHhCCCc
Confidence 3445677889999999999 87521 238999999999987421 00234456667889
Q ss_pred CEEecCCCccCCC----CChhhhcCCCCCeEEc--cCCcceecC----CCC----CCcccccCCCC
Q 039394 105 HALDLSRNQPIGK----IPEGISQLGLLGVLSL--SNNKLSGKI----PSG----TKLQTLDASSY 156 (157)
Q Consensus 105 ~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l--s~N~l~~~~----p~~----~~l~~l~~~~~ 156 (157)
++|++++|.+... +.+.+...+.|++|++ ++|.++..- ... +.++.|+++.+
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 9999999998753 4566777889999999 889986532 111 77888888764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=7e-07 Score=66.11 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=35.2
Q ss_pred cCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCccee---------ecceeeeeecc
Q 039394 15 IPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSILG---------DIIIVSMIDLQ 70 (157)
Q Consensus 15 ~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~---------~~~~l~~l~l~ 70 (157)
++..+..+++|+.| .++.-. .++. + .+++|++|++..+.+.. .+|+|+.|+++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 44455777889999 444211 2333 3 37889999998887642 46788888875
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=3.7e-06 Score=62.22 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=75.7
Q ss_pred Ccchhcccccccc-c-cccc---------eeecCccCcCCCCCCEEEccCCc-ce---eecceeeeeecccccccceE--
Q 039394 16 PHCSRYWQSLKVL-K-SNHI---------NGCVPIRLCYVRPVQVLDISYSS-IL---GDIIIVSMIDLQMVQKKNSI-- 78 (157)
Q Consensus 16 p~~~~~l~~L~~L-~-~n~~---------~~~~p~~~~~l~~L~~L~l~~n~-~~---~~~~~l~~l~l~~n~l~~~~-- 78 (157)
..+...+++|+.| . .... .+.+...+..+++|+.|.+++|. +. -..++|+.|++..+.+....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHH
Confidence 3445566777777 2 2211 11233445667888888887773 21 01357888888777665322
Q ss_pred EEc--eeeeeccc-cc-------cc-----ccccc--ccccCCCEEecCCCccCCCCChhhh---cCCCCCeEEccCCcc
Q 039394 79 AII--NVVVVGEL-FK-------RP-----IPTKI--DQLTMLHALDLSRNQPIGKIPEGIS---QLGLLGVLSLSNNKL 138 (157)
Q Consensus 79 ~~~--~~~~l~~~-~~-------~~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~L~ls~N~l 138 (157)
.+. .++.+..+ +. +. +...+ ..+++|++|++++|.+.+..+..+. .++.|+.|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 111 22333332 10 00 11112 2467788888877776543333333 466778888888777
Q ss_pred eec----CCCC----CCcccccCCCC
Q 039394 139 SGK----IPSG----TKLQTLDASSY 156 (157)
Q Consensus 139 ~~~----~p~~----~~l~~l~~~~~ 156 (157)
... ++.. +.|+.|+++.+
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCC
Confidence 652 3332 66777776543
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=8.6e-05 Score=55.62 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=22.1
Q ss_pred cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394 96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136 (157)
Q Consensus 96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 136 (157)
..|..|++|+.+++.. .+...-..+|..|.+|+.+++..|
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 3455566666666653 334333445666666666666443
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=7.1e-05 Score=56.08 Aligned_cols=41 Identities=7% Similarity=-0.089 Sum_probs=27.5
Q ss_pred ccccccccCCCEEecCCCccC-----CCCChhhhcCCCCCeEEccC
Q 039394 95 PTKIDQLTMLHALDLSRNQPI-----GKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 95 p~~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~ls~ 135 (157)
..+|..|++|+.+++.+|.+. ...+.+|..|++|+.+++..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 445677777887777776643 23455677777888877774
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.17 E-value=0.00016 Score=48.10 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCCEEEccCCccee-------ecceeeeeeccccc-ccceEEEceeeeecccccccccccccc----ccCCCEEecCCC
Q 039394 45 RPVQVLDISYSSILG-------DIIIVSMIDLQMVQ-KKNSIAIINVVVVGELFKRPIPTKIDQ----LTMLHALDLSRN 112 (157)
Q Consensus 45 ~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~p~~~~~----l~~L~~L~l~~N 112 (157)
.+|+.||++++.++. .+++|+.|++++|. +++. .-..+.. +++|++|+++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~----------------gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG----------------CLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH----------------HHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH----------------HHHHHHhcccccCCCCEEEcCCC
Confidence 357777777776542 23466777777664 3321 1112333 346889999887
Q ss_pred c-cCCCCChhhhcCCCCCeEEccCCc
Q 039394 113 Q-PIGKIPEGISQLGLLGVLSLSNNK 137 (157)
Q Consensus 113 ~-l~~~~p~~~~~l~~L~~L~ls~N~ 137 (157)
. ++..--..+..+++|+.|++++++
T Consensus 125 ~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 125 GNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 4 554444456788899999999875
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.98 E-value=0.00015 Score=48.16 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=53.4
Q ss_pred cccccc--ccccceeecCccCcCCCCCCEEEccCCc-cee-------e----cceeeeeeccccc-ccceEEEceeeeec
Q 039394 23 QSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSS-ILG-------D----IIIVSMIDLQMVQ-KKNSIAIINVVVVG 87 (157)
Q Consensus 23 ~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-------~----~~~l~~l~l~~n~-l~~~~~~~~~~~l~ 87 (157)
..|+.| +++.++...-..+..+++|++|+++++. ++. . .++|+.|++++|. +++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----------- 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----------- 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-----------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-----------
Confidence 357777 6666665555567889999999999885 441 1 1368899998875 543
Q ss_pred cccccccccccccccCCCEEecCCCccC
Q 039394 88 ELFKRPIPTKIDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~ 115 (157)
.--..+..+++|++|+++++.-.
T Consensus 130 -----~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 130 -----KGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp -----HHHHHGGGCTTCCEEEEESCTTC
T ss_pred -----HHHHHHhcCCCCCEEECCCCCCC
Confidence 12234667899999999987633
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0018 Score=40.69 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 103 MLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 103 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
++++|++++|+|....+..|..+++|+.|++++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 567777777777755555667777777777777765
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.64 E-value=0.018 Score=42.61 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=63.9
Q ss_pred Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeec
Q 039394 16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVG 87 (157)
Q Consensus 16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~ 87 (157)
..+|..+..|+.+ -.+.........+..++.|+.+.+..+ ++. ...+|+.+.+..+ +.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~------------ 323 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT------------ 323 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC------------
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc------------
Confidence 3456677777777 333334445566777888888887533 221 0115555555433 11
Q ss_pred cccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 88 ELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
..-..+|..|.+|+.+.+..+ +...-..+|.+|.+|+.+++.++..
T Consensus 324 ----~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 324 ----QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ----EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ----EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 123456788888988888655 3433456788888999998887653
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.00032 Score=47.45 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=8.9
Q ss_pred cccccCCCEEecCCCccC
Q 039394 98 IDQLTMLHALDLSRNQPI 115 (157)
Q Consensus 98 ~~~l~~L~~L~l~~N~l~ 115 (157)
+..-+.|+.|+++.|.+.
T Consensus 94 L~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHCSSCCEEECCSSBCC
T ss_pred HhcCCccCeEecCCCcCC
Confidence 333445555555555544
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.31 E-value=0.011 Score=43.78 Aligned_cols=39 Identities=10% Similarity=-0.017 Sum_probs=21.0
Q ss_pred cccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394 96 TKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 96 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~ 135 (157)
.+|..|.+|+.+.+..+ +...-..+|..|.+|+.+++..
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 34555666666666554 3323344556666666666543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.30 E-value=0.016 Score=42.50 Aligned_cols=103 Identities=8% Similarity=-0.006 Sum_probs=60.1
Q ss_pred Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCcce------eecceeeeeecccccccceEEEceeeeecc
Q 039394 16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSIL------GDIIIVSMIDLQMVQKKNSIAIINVVVVGE 88 (157)
Q Consensus 16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~------~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~ 88 (157)
..++..+..|+.+ -...+.......+..+.+++.+.+..+--. ....+|+.+.+.++.+..
T Consensus 233 ~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~------------ 300 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIET------------ 300 (379)
T ss_dssp TTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCE------------
T ss_pred cccccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccce------------
Confidence 3455666677766 333344445566777778888777543111 011256666665555442
Q ss_pred ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccC
Q 039394 89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSN 135 (157)
Q Consensus 89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~ 135 (157)
.-..+|..|.+|+.+.+..+ +...-..+|.+|.+|+.+.+..
T Consensus 301 ----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 301 ----LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ----ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 23456777888888888654 3323345677788888777654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.72 E-value=0.0028 Score=42.83 Aligned_cols=90 Identities=6% Similarity=0.023 Sum_probs=60.8
Q ss_pred CccCcCCCCCCEEEccCCcceeec-----------ceeeeeecccccccceEEEceeeeeccccccccccccccccCCCE
Q 039394 38 PIRLCYVRPVQVLDISYSSILGDI-----------IIVSMIDLQMVQKKNSIAIINVVVVGELFKRPIPTKIDQLTMLHA 106 (157)
Q Consensus 38 p~~~~~l~~L~~L~l~~n~~~~~~-----------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~p~~~~~l~~L~~ 106 (157)
-..+..-+.|+.|++++|.+...- ..++.|+++.|.+.+.. ...+...+..-+.|++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G------------a~ala~aL~~N~tL~~ 130 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL------------LARLLRSTLVTQSIVE 130 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH------------HHHHHHHTTTTCCCSE
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH------------HHHHHHHHhhCCceeE
Confidence 334556678899999999886321 18889999999987421 0023345666678999
Q ss_pred EecCCCc---cCC----CCChhhhcCCCCCeEEccCCcce
Q 039394 107 LDLSRNQ---PIG----KIPEGISQLGLLGVLSLSNNKLS 139 (157)
Q Consensus 107 L~l~~N~---l~~----~~p~~~~~l~~L~~L~ls~N~l~ 139 (157)
|++++|. +.. .+.+.+..-+.|..|+++.|.+.
T Consensus 131 L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 131 FKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp EECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred EECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 9998653 222 24455666788999999988754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.56 E-value=0.017 Score=36.12 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=33.4
Q ss_pred EEECcCCccc-cccCcchhcccccccc--ccccceeecCccCcCCCCCCEEEccCCcc
Q 039394 3 YLDLSDNQLS-EEIPHCSRYWQSLKVL--KSNHINGCVPIRLCYVRPVQVLDISYSSI 57 (157)
Q Consensus 3 ~L~L~~n~l~-~~~p~~~~~l~~L~~L--~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 57 (157)
.++.++++++ ..+|..+. .++++| .+|.+....+..|..+++|+.|++++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566677765 24454332 346666 67777755556667777777777777755
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.25 E-value=0.044 Score=40.51 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=61.4
Q ss_pred Ccchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeec
Q 039394 16 PHCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVG 87 (157)
Q Consensus 16 p~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~ 87 (157)
..+|..+..|+.+ -.+.+.......|..+++|+.+++..+ ++. ...+|+.+.+..+ +.
T Consensus 281 ~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~------------ 346 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT------------ 346 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC------------
T ss_pred CcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC------------
Confidence 4567778888888 556666566678888999999998654 221 1115555555433 22
Q ss_pred cccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCCcc
Q 039394 88 ELFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNNKL 138 (157)
Q Consensus 88 ~~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 138 (157)
..-..+|..|++|+.+++.++... ...+..+..|+.+.+..|.+
T Consensus 347 ----~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 347 ----KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ----BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ----EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 123457899999999999988633 24566778888888776643
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.10 E-value=0.25 Score=36.12 Aligned_cols=102 Identities=9% Similarity=0.017 Sum_probs=65.5
Q ss_pred cchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee-------ecceeeeeecccccccceEEEceeeeecc
Q 039394 17 HCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG-------DIIIVSMIDLQMVQKKNSIAIINVVVVGE 88 (157)
Q Consensus 17 ~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------~~~~l~~l~l~~n~l~~~~~~~~~~~l~~ 88 (157)
..+..+.+++.. ....+.......+..+..|+.+.+..+ ++. ...+++.+.+..+ +.
T Consensus 211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------------- 275 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------------- 275 (379)
T ss_dssp TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-------------
T ss_pred cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-------------
Confidence 445556666666 444445455667788889999988655 221 0113444443322 11
Q ss_pred ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394 89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136 (157)
Q Consensus 89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 136 (157)
..-...+..+.+|+.+.+..+.+...-..+|..|.+|+.+.+..+
T Consensus 276 ---~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 276 ---TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp ---EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ---eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 122346788999999999988876555678999999999999754
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.10 E-value=0.035 Score=41.04 Aligned_cols=94 Identities=9% Similarity=0.012 Sum_probs=58.1
Q ss_pred cchhcccccccc-ccccceeecCccCcCCCCCCEEEccCCccee----e---cceeeeeecccccccceEEEceeeeecc
Q 039394 17 HCSRYWQSLKVL-KSNHINGCVPIRLCYVRPVQVLDISYSSILG----D---IIIVSMIDLQMVQKKNSIAIINVVVVGE 88 (157)
Q Consensus 17 ~~~~~l~~L~~L-~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~----~---~~~l~~l~l~~n~l~~~~~~~~~~~l~~ 88 (157)
..|..+.+|+.+ ..+.+......+|..+++|+.+++..+ ++. . ..+|+.+.+..+ +..
T Consensus 291 ~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~------------ 356 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK------------ 356 (394)
T ss_dssp TTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE------------
T ss_pred ccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE------------
Confidence 456677778777 444455555667888888888888644 321 0 115555555443 221
Q ss_pred ccccccccccccccCCCEEecCCCccCCCCChhhhcCCCCCe
Q 039394 89 LFKRPIPTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGV 130 (157)
Q Consensus 89 ~~~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 130 (157)
.-..+|..|.+|+.+++..+- . .+...|.++.+|+.
T Consensus 357 ----I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 357 ----IGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp ----ECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred ----ehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 234578899999999987652 2 33456777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.28 E-value=26 Score=20.34 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=29.1
Q ss_pred ccccccccCCCEEecCCCccCCCCChhhhcCCCCCeEEccCC
Q 039394 95 PTKIDQLTMLHALDLSRNQPIGKIPEGISQLGLLGVLSLSNN 136 (157)
Q Consensus 95 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 136 (157)
..+|..|++|+.+.+..+- ...-...|..|.+|+.+.+...
T Consensus 13 ~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 4467788888888877653 3344556888888888888753
Done!