BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039395
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
Length = 109
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 151 TDTLLVSQKLAKDSELYSSMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSSYT 210
T+ LL Q L + L + G+F L+MQ D NL + G W S T
Sbjct: 3 TNYLLSGQTLDTEGHLKN---------GDFDLVMQDDCNLVLYN---------GNWQSNT 44
Query: 211 SGAGHNVTLNLDQYGILYLGNSTGFIVKNLTDGRPSVNGTTLLYQHQIG 259
+ G + L L YG L + N G V G SV G H G
Sbjct: 45 ANNGRDCKLTLTDYGELVIKNGDGSTV--WKSGAQSVKGNYAAVVHPDG 91
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 25/71 (35%)
Query: 120 RTAVAAAMLDSGNFVLCDSSSQTVWASFDHPTDTLLVSQKLAKDSELYSSMSLTNQSIGN 179
++ +A + GNFV+ DSS +++WAS H T + GN
Sbjct: 50 KSGCSAVLQSDGNFVVYDSSGRSLWAS--HST-----------------------RGSGN 84
Query: 180 FKLLMQSDGNL 190
+ L++Q DGN+
Sbjct: 85 YILILQDDGNV 95
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 34/139 (24%)
Query: 149 HPTDTLLVSQKLAKDSELYSSMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSS 208
P L VS + AK S S+ ++ FKL + ++A +S +DG +SS
Sbjct: 206 QPPPALKVSPQTAK------SDSVPETAVSIFKLTRE---QISALKAKSKEDGNTISYSS 256
Query: 209 YTSGAGH-------NVTLNLDQYGILYLGNSTGFIVKNLTDGR--------PSVNGTTLL 253
Y AGH L +DQ LY+ TDGR P G +
Sbjct: 257 YEMLAGHVWRCACKARGLEVDQGTKLYIA----------TDGRARLRPSLPPGYFGNVIF 306
Query: 254 YQHQIGTSGSFSSKILWVA 272
I +G K +W A
Sbjct: 307 TATPIAIAGDLEFKPVWYA 325
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 235 FIVKNLTDGRPSVNGTTLLYQHQIGTSGSFSSKILWVAIVDEDRCVVKGACGLNSYCSLN 294
FI K V G L Y +GT G S+ VA++DE+ C+ G C Y + N
Sbjct: 912 FIPKKPIPAIKDVIGKALQY---LGTFGELSNIEQVVAVIDEEMCINCGKC----YMTCN 964
Query: 295 GTGIACFCPPGFIYIDPE 312
+G I DPE
Sbjct: 965 DSGYQA------IQFDPE 976
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 235 FIVKNLTDGRPSVNGTTLLYQHQIGTSGSFSSKILWVAIVDEDRCVVKGACGLNSYCSLN 294
FI K V G L Y +GT G S+ VA++DE+ C+ G C Y + N
Sbjct: 912 FIPKKPIPAIKDVIGKALQY---LGTFGELSNIEQVVAVIDEEMCINCGKC----YMTCN 964
Query: 295 GTGIACFCPPGFIYIDPE 312
+G I DPE
Sbjct: 965 DSGYQA------IQFDPE 976
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 28/128 (21%)
Query: 160 LAKDSELYSSMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSSYTSGAGH---- 215
LA + +S S+ ++ FKL + ++A +S +DG +SSY AGH
Sbjct: 214 LAVSPQTAASDSVPETAVSIFKLTRE---QISALKAKSKEDGNTISYSSYEMLAGHVWRC 270
Query: 216 ---NVTLNLDQYGILYLGNSTGFIVKNLTDGR--------PSVNGTTLLYQHQIGTSGSF 264
L +DQ LY+ TDGR P G + I +G
Sbjct: 271 ACKARGLEVDQGTKLYIA----------TDGRARLRPSLPPGYFGNVIFTATPIAIAGDL 320
Query: 265 SSKILWVA 272
K +W A
Sbjct: 321 EFKPVWYA 328
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 28/128 (21%)
Query: 160 LAKDSELYSSMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSSYTSGAGH---- 215
LA + +S S+ ++ FKL + ++A +S +DG +SSY AGH
Sbjct: 214 LAVSPQTAASDSVPETAVSIFKLTRE---QISALKAKSKEDGNTISYSSYEMLAGHVWRC 270
Query: 216 ---NVTLNLDQYGILYLGNSTGFIVKNLTDGR--------PSVNGTTLLYQHQIGTSGSF 264
L +DQ LY+ TDGR P G + I +G
Sbjct: 271 ACKARGLEVDQGTKLYIA----------TDGRARLRPSLPPGYFGNVIFTATPIAIAGDL 320
Query: 265 SSKILWVA 272
K +W A
Sbjct: 321 EFKPVWYA 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,489,308
Number of Sequences: 62578
Number of extensions: 466446
Number of successful extensions: 1248
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 12
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)