Query 039395
Match_columns 329
No_of_seqs 182 out of 1324
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 7.3E-29 1.6E-33 202.0 6.3 101 75-176 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 6.3E-25 1.4E-29 179.3 14.5 106 39-150 7-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 6.4E-24 1.4E-28 172.8 13.8 105 39-149 7-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.8 3.9E-20 8.4E-25 149.6 9.0 84 217-310 25-110 (110)
5 smart00108 B_lectin Bulb-type 99.1 3.2E-10 7E-15 92.0 9.2 86 93-209 23-112 (114)
6 cd00028 B_lectin Bulb-type man 99.1 4.2E-10 9.1E-15 91.7 8.9 87 93-210 23-114 (116)
7 PF01453 B_lectin: D-mannose b 99.0 6E-09 1.3E-13 84.7 10.9 100 40-151 12-114 (114)
8 cd00053 EGF Epidermal growth f 90.9 0.19 4.2E-06 30.6 2.1 31 279-309 2-32 (36)
9 PF07645 EGF_CA: Calcium-bindi 90.3 0.11 2.3E-06 34.3 0.5 33 277-309 3-36 (42)
10 smart00179 EGF_CA Calcium-bind 88.4 0.42 9.1E-06 30.0 2.3 31 277-307 3-33 (39)
11 cd00054 EGF_CA Calcium-binding 86.9 0.58 1.3E-05 28.8 2.2 32 277-308 3-34 (38)
12 PF07172 GRP: Glycine rich pro 86.8 0.37 8E-06 37.8 1.5 20 1-20 1-22 (95)
13 PF01683 EB: EB module; Inter 85.6 0.78 1.7E-05 31.4 2.5 32 275-310 18-49 (52)
14 PF07974 EGF_2: EGF-like domai 79.2 1.5 3.3E-05 27.2 1.8 24 283-308 6-29 (32)
15 PF00008 EGF: EGF-like domain 78.1 0.43 9.4E-06 29.4 -0.9 26 283-308 4-30 (32)
16 PF12947 EGF_3: EGF domain; I 77.1 0.49 1.1E-05 30.2 -0.9 27 282-308 5-31 (36)
17 PF12661 hEGF: Human growth fa 76.3 0.5 1.1E-05 23.3 -0.8 10 299-308 1-10 (13)
18 TIGR03300 assembly_YfgL outer 75.1 79 0.0017 30.2 17.1 50 96-146 247-305 (377)
19 smart00181 EGF Epidermal growt 74.4 2.6 5.7E-05 25.7 2.0 25 283-308 6-30 (35)
20 PRK11138 outer membrane biogen 72.8 95 0.0021 30.1 16.2 50 96-146 262-320 (394)
21 PF12662 cEGF: Complement Clr- 72.2 2.3 4.9E-05 24.6 1.1 11 299-309 3-13 (24)
22 PF09064 Tme5_EGF_like: Thromb 70.7 2.5 5.4E-05 26.6 1.1 19 290-309 11-29 (34)
23 PF12690 BsuPI: Intracellular 69.8 5.3 0.00012 30.3 3.1 14 101-115 27-40 (82)
24 PRK11138 outer membrane biogen 69.6 16 0.00034 35.6 7.2 54 92-146 121-186 (394)
25 PF13360 PQQ_2: PQQ-like domai 69.2 21 0.00046 31.3 7.5 71 75-146 13-102 (238)
26 TIGR03300 assembly_YfgL outer 67.0 21 0.00045 34.3 7.4 70 75-146 85-171 (377)
27 PF13360 PQQ_2: PQQ-like domai 64.9 43 0.00093 29.3 8.5 71 75-146 56-148 (238)
28 KOG1214 Nidogen and related ba 59.6 7.2 0.00016 41.6 2.7 45 277-327 828-873 (1289)
29 KOG4649 PQQ (pyrrolo-quinoline 49.1 49 0.0011 31.0 6.0 43 75-118 169-216 (354)
30 PF10731 Anophelin: Thrombin i 48.6 18 0.0004 25.7 2.5 17 1-17 1-17 (65)
31 PF13570 PQQ_3: PQQ-like domai 46.6 27 0.0006 22.0 3.0 7 111-117 2-8 (40)
32 PF01436 NHL: NHL repeat; Int 45.9 30 0.00066 20.3 2.9 21 93-114 6-26 (28)
33 KOG1214 Nidogen and related ba 45.2 13 0.00029 39.7 2.0 44 277-323 735-779 (1289)
34 PF05935 Arylsulfotrans: Aryls 43.1 47 0.001 33.5 5.5 88 100-193 128-238 (477)
35 PF14670 FXa_inhibition: Coagu 41.2 7.5 0.00016 24.7 -0.3 21 290-310 11-31 (36)
36 cd00216 PQQ_DH Dehydrogenases 38.5 1.2E+02 0.0025 30.7 7.5 70 75-146 39-136 (488)
37 KOG0291 WD40-repeat-containing 35.9 2.7E+02 0.0058 30.0 9.6 55 90-145 352-420 (893)
38 PHA02887 EGF-like protein; Pro 35.6 28 0.0006 28.3 2.0 33 275-308 82-118 (126)
39 COG2834 LolA Outer membrane li 35.5 1.1E+02 0.0024 27.1 6.2 59 42-112 39-99 (211)
40 PF12946 EGF_MSP1_1: MSP1 EGF 34.1 7.5 0.00016 25.0 -1.2 27 283-309 5-32 (37)
41 PF12276 DUF3617: Protein of u 33.9 41 0.00089 28.3 3.0 34 1-34 1-34 (162)
42 PF06247 Plasmod_Pvs28: Plasmo 33.1 11 0.00024 33.2 -0.7 42 275-321 38-88 (197)
43 KOG3881 Uncharacterized conser 31.5 2.6E+02 0.0056 27.6 8.1 77 75-153 200-280 (412)
44 PF12458 DUF3686: ATPase invol 29.5 1.2E+02 0.0027 30.2 5.7 57 40-109 311-368 (448)
45 PF02237 BPL_C: Biotin protein 28.3 74 0.0016 21.2 2.9 16 125-140 20-35 (48)
46 PF06006 DUF905: Bacterial pro 27.7 63 0.0014 23.7 2.5 17 133-149 35-51 (70)
47 PLN00033 photosystem II stabil 27.6 1.9E+02 0.0041 28.6 6.8 45 100-145 259-306 (398)
48 TIGR03066 Gem_osc_para_1 Gemma 27.4 3.1E+02 0.0067 22.1 6.7 51 90-141 34-103 (111)
49 PF12197 lci: Bacillus cereus 26.4 1.5E+02 0.0033 19.9 4.0 23 40-62 3-25 (45)
50 PF01011 PQQ: PQQ enzyme repea 25.2 90 0.002 19.4 2.8 18 128-145 7-25 (38)
51 PF14269 Arylsulfotran_2: Aryl 25.1 5.8E+02 0.013 24.0 12.4 29 158-192 266-294 (299)
52 cd05845 Ig2_L1-CAM_like Second 24.6 1.2E+02 0.0026 23.5 3.9 30 75-106 34-63 (95)
53 PF10080 DUF2318: Predicted me 23.2 78 0.0017 25.1 2.6 67 247-321 3-77 (102)
54 COG1520 FOG: WD40-like repeat 23.1 3.4E+02 0.0074 25.9 7.7 70 75-145 88-178 (370)
55 PRK06655 flgD flagellar basal 22.8 1.6E+02 0.0034 26.8 4.8 22 165-186 153-178 (225)
56 PF07354 Sp38: Zona-pellucida- 20.9 1.2E+02 0.0027 28.2 3.7 31 75-107 13-43 (271)
57 PF05092 PIF: Per os infectivi 20.9 66 0.0014 32.8 2.2 45 277-321 149-195 (522)
58 TIGR02608 delta_60_rpt delta-6 20.4 2.5E+02 0.0055 19.5 4.4 37 92-133 4-40 (55)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=7.3e-29 Score=201.97 Aligned_cols=101 Identities=42% Similarity=0.579 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCccC--CcceEEEecCCcEEEEecCCCceEEee-cCC-C--CceEEEEecCCCeeEecCCCeeEEeecC
Q 039395 75 IIDVWTARRTDPVVS--SGAALQFSVDGSRVLLRNSNGEVQLIA-EPT-R--TAVAAAMLDSGNFVLCDSSSQTVWASFD 148 (329)
Q Consensus 75 ~~~vW~anr~~p~~~--~~~~l~l~~~G~L~~l~d~~~~~vW~s-~~~-~--~~~~~~l~d~GNlVl~~~~~~~~W~SFd 148 (329)
+++||+|||+.|+.. ...+|.|+.||+|+ |+|..++++|++ ++. . .+..|+|+|+|||||+|..+.+|||||+
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLv-l~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~ 80 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLV-LYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD 80 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEE-EEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT
T ss_pred cccccccccccccccccccccceECCCCeEE-EEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC
Confidence 789999999999953 34789999999999 999998999999 544 3 4789999999999999998999999999
Q ss_pred CCCCccccCcccCC----C--ceeeecCCCCCCC
Q 039395 149 HPTDTLLVSQKLAK----D--SELYSSMSLTNQS 176 (329)
Q Consensus 149 ~PtDtllpgq~L~~----~--~~L~Sw~s~~dps 176 (329)
||+||+||+|+|+. + ..|+||++.+||+
T Consensus 81 ~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999987 2 3599999999986
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=6.3e-25 Score=179.31 Aligned_cols=106 Identities=29% Similarity=0.444 Sum_probs=93.6
Q ss_pred CCeEeeCCCeEEEEeecCC-Cc-eEEEEEecccCCCCCCcEEEEcCCCCCccCCcceEEEecCCcEEEEecCCCceEEee
Q 039395 39 PNFWPSPSGHFAFGFYPTG-NG-FKAGIWLIGSGPANDIIDVWTARRTDPVVSSGAALQFSVDGSRVLLRNSNGEVQLIA 116 (329)
Q Consensus 39 ~~~l~S~~g~f~lgf~~~~-~~-~~l~i~~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~d~~~~~vW~s 116 (329)
+++|+|+++.|++|||... .. .+++|||. +.+ .++||.||++.|.. ..+.|.|+.||+|+ |+|.+|.+||++
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~-~~~---~~~vW~snt~~~~~-~~~~l~l~~dGnLv-l~~~~g~~vW~S 80 (116)
T cd00028 7 GQTLVSSGSLFELGFFKLIMQSRDYNLILYK-GSS---RTVVWVANRDNPSG-SSCTLTLQSDGNLV-IYDGSGTVVWSS 80 (116)
T ss_pred CCEEEeCCCcEEEecccCCCCCCeEEEEEEe-CCC---CeEEEECCCCCCCC-CCEEEEEecCCCeE-EEcCCCcEEEEe
Confidence 4899999999999999855 33 88999998 533 58999999998843 67899999999999 999999999999
Q ss_pred cCC--CCceEEEEecCCCeeEecCCCeeEEeecCCC
Q 039395 117 EPT--RTAVAAAMLDSGNFVLCDSSSQTVWASFDHP 150 (329)
Q Consensus 117 ~~~--~~~~~~~l~d~GNlVl~~~~~~~~W~SFd~P 150 (329)
++. ....+++|+||||||||+.++.+||||||||
T Consensus 81 ~~~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 81 NTTRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred cccCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 975 4677899999999999999999999999998
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=6.4e-24 Score=172.80 Aligned_cols=105 Identities=30% Similarity=0.449 Sum_probs=92.3
Q ss_pred CCeEeeCCCeEEEEeecCC-CceEEEEEecccCCCCCCcEEEEcCCCCCccCCcceEEEecCCcEEEEecCCCceEEeec
Q 039395 39 PNFWPSPSGHFAFGFYPTG-NGFKAGIWLIGSGPANDIIDVWTARRTDPVVSSGAALQFSVDGSRVLLRNSNGEVQLIAE 117 (329)
Q Consensus 39 ~~~l~S~~g~f~lgf~~~~-~~~~l~i~~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~d~~~~~vW~s~ 117 (329)
++.|+|+++.|++|||... ..++++|||. +.+ .++||+|||+.|+. ..+.|.|++||+|+ |+|.+|.+||+++
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~-~~~---~~~vW~snt~~~~~-~~~~l~l~~dGnLv-l~~~~g~~vW~S~ 80 (114)
T smart00108 7 GQTLVSGNSLFELGFFTLIMQNDYNLILYK-SSS---RTVVWVANRDNPVS-DSCTLTLQSDGNLV-LYDGDGRVVWSSN 80 (114)
T ss_pred CCEEecCCCcEeeeccccCCCCCEEEEEEE-CCC---CcEEEECCCCCCCC-CCEEEEEeCCCCEE-EEeCCCCEEEEec
Confidence 4899999999999999854 3478899998 432 58999999999876 35899999999999 9999999999998
Q ss_pred CC--CCceEEEEecCCCeeEecCCCeeEEeecCC
Q 039395 118 PT--RTAVAAAMLDSGNFVLCDSSSQTVWASFDH 149 (329)
Q Consensus 118 ~~--~~~~~~~l~d~GNlVl~~~~~~~~W~SFd~ 149 (329)
+. .+..+++|+|||||||++.+++++||||||
T Consensus 81 t~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 81 TTGANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred ccCCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 75 567789999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.82 E-value=3.9e-20 Score=149.64 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=66.1
Q ss_pred eEEEecCcceEEEec--cCCcEEEEeeCCCcCcCCcEEEEEeeCCCCCCcceeeEEEEecCCCCCcCCCCCCCCcccccC
Q 039395 217 VTLNLDQYGILYLGN--STGFIVKNLTDGRPSVNGTTLLYQHQIGTSGSFSSKILWVAIVDEDRCVVKGACGLNSYCSLN 294 (329)
Q Consensus 217 ~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~dG~l~~y~w~~~~~~~W~~~~~w~~~~p~d~Cd~yg~CG~~giC~~~ 294 (329)
+.++.++ ++.|+.+ .+.+++ .|.++ +++|++|+|.|.+. .++|. ++|.+ |.|+||+|+.||+||+|+.
T Consensus 25 ~~fv~~~-~e~~~t~~~~~~s~~--~r~~l-d~~G~l~~~~w~~~-~~~W~--~~~~~--p~d~Cd~y~~CG~~g~C~~- 94 (110)
T PF00954_consen 25 YSFVSNN-EEVYYTYSLSNSSVL--SRLVL-DSDGQLQRYIWNES-TQSWS--VFWSA--PKDQCDVYGFCGPNGICNS- 94 (110)
T ss_pred EEEEECC-CeEEEEEecCCCceE--EEEEE-eeeeEEEEEEEecC-CCcEE--EEEEe--cccCCCCccccCCccEeCC-
Confidence 3455443 4455543 344544 45555 59999999999987 78998 59999 9999999999999999987
Q ss_pred CCCcccCCCCCCccCC
Q 039395 295 GTGIACFCPPGFIYID 310 (329)
Q Consensus 295 ~~~~~C~C~~GF~p~~ 310 (329)
++.+.|+||+||+|++
T Consensus 95 ~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 95 NNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCCCceECCCCcCCCc
Confidence 5688999999999974
No 5
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.12 E-value=3.2e-10 Score=92.02 Aligned_cols=86 Identities=27% Similarity=0.445 Sum_probs=66.2
Q ss_pred eEEEecCCcEEEEecCC-CceEEeecCC---CCceEEEEecCCCeeEecCCCeeEEeecCCCCCccccCcccCCCceeee
Q 039395 93 ALQFSVDGSRVLLRNSN-GEVQLIAEPT---RTAVAAAMLDSGNFVLCDSSSQTVWASFDHPTDTLLVSQKLAKDSELYS 168 (329)
Q Consensus 93 ~l~l~~~G~L~~l~d~~-~~~vW~s~~~---~~~~~~~l~d~GNlVl~~~~~~~~W~SFd~PtDtllpgq~L~~~~~L~S 168 (329)
++.++.||+|| +++.. +.+||++++. .....+.|+++|||||++.++.++|+|-..
T Consensus 23 ~~~~q~dgnlV-~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t~------------------- 82 (114)
T smart00108 23 TLIMQNDYNLI-LYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTT------------------- 82 (114)
T ss_pred ccCCCCCEEEE-EEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEeccc-------------------
Confidence 45667899999 88654 5799998874 233689999999999999989999998211
Q ss_pred cCCCCCCCCceEEEEEccCCceeEEeccccCCCCcceeecC
Q 039395 169 SMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSSY 209 (329)
Q Consensus 169 w~s~~dps~G~y~l~~~~~g~~~l~~~~~~~~~~~~yW~sg 209 (329)
...+.|.+.|+++|++++|... ..+.|++.
T Consensus 83 ------~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf 112 (114)
T smart00108 83 ------GANGNYVLVLLDDGNLVIYDSD-----GNFLWQSF 112 (114)
T ss_pred ------CCCCceEEEEeCCCCEEEECCC-----CCEEeCCC
Confidence 1356789999999999999432 24788764
No 6
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.10 E-value=4.2e-10 Score=91.66 Aligned_cols=87 Identities=25% Similarity=0.433 Sum_probs=66.9
Q ss_pred eEEEec-CCcEEEEecCC-CceEEeecCC---CCceEEEEecCCCeeEecCCCeeEEeecCCCCCccccCcccCCCceee
Q 039395 93 ALQFSV-DGSRVLLRNSN-GEVQLIAEPT---RTAVAAAMLDSGNFVLCDSSSQTVWASFDHPTDTLLVSQKLAKDSELY 167 (329)
Q Consensus 93 ~l~l~~-~G~L~~l~d~~-~~~vW~s~~~---~~~~~~~l~d~GNlVl~~~~~~~~W~SFd~PtDtllpgq~L~~~~~L~ 167 (329)
.+.++. ||+|| +++.. +.+||++++. .....+.|+++|||||++.++.++|+|-..
T Consensus 23 ~~~~q~~dgnlv-~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~~------------------ 83 (116)
T cd00028 23 KLIMQSRDYNLI-LYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNTT------------------ 83 (116)
T ss_pred cCCCCCCeEEEE-EEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEeccc------------------
Confidence 345666 99999 88654 4789999875 355789999999999999999999997311
Q ss_pred ecCCCCCCCCceEEEEEccCCceeEEeccccCCCCcceeecCC
Q 039395 168 SSMSLTNQSIGNFKLLMQSDGNLNAFPLRSIQDGKYGYWSSYT 210 (329)
Q Consensus 168 Sw~s~~dps~G~y~l~~~~~g~~~l~~~~~~~~~~~~yW~sg~ 210 (329)
...+.+.+.|++||++++|... ....|++..
T Consensus 84 -------~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~ 114 (116)
T cd00028 84 -------RVNGNYVLVLLDDGNLVLYDSD-----GNFLWQSFD 114 (116)
T ss_pred -------CCCCceEEEEeCCCCEEEECCC-----CCEEEcCCC
Confidence 0246789999999999999532 247888754
No 7
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.97 E-value=6e-09 Score=84.74 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=73.2
Q ss_pred CeEeeCCCeEEEEeecCCCceEEEEEecccCCCCCCcEEEEc-CCCCCccCCcceEEEecCCcEEEEecCCCceEEeecC
Q 039395 40 NFWPSPSGHFAFGFYPTGNGFKAGIWLIGSGPANDIIDVWTA-RRTDPVVSSGAALQFSVDGSRVLLRNSNGEVQLIAEP 118 (329)
Q Consensus 40 ~~l~S~~g~f~lgf~~~~~~~~l~i~~~~~~~~~~~~~vW~a-nr~~p~~~~~~~l~l~~~G~L~~l~d~~~~~vW~s~~ 118 (329)
+.+.+.+|.+.|-|+.+|+. +.|. . . .+++|.. +...... ..+.++|++||||| |+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~dGnL----vl~~-~--~--~~~iWss~~t~~~~~-~~~~~~L~~~GNlv-l~d~~~~~lW~Sf~ 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGNL----VLYD-S--N--GSVIWSSNNTSGRGN-SGCYLVLQDDGNLV-LYDSSGNVLWQSFD 80 (114)
T ss_dssp EEEEECETTEEEEEETTSEE----EEEE-T--T--TEEEEE--S-TTSS--SSEEEEEETTSEEE-EEETTSEEEEESTT
T ss_pred cccccccccccceECCCCeE----EEEc-C--C--CCEEEEecccCCccc-cCeEEEEeCCCCEE-EEeecceEEEeecC
Confidence 45656568999999999974 4454 2 3 5789999 5454322 47899999999999 99999999998855
Q ss_pred CCCceEEEEec--CCCeeEecCCCeeEEeecCCCC
Q 039395 119 TRTAVAAAMLD--SGNFVLCDSSSQTVWASFDHPT 151 (329)
Q Consensus 119 ~~~~~~~~l~d--~GNlVl~~~~~~~~W~SFd~Pt 151 (329)
....+.+.+++ +||++ +.....+.|.|-+.|+
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS----
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCCC
Confidence 46778888988 99999 7766789999876663
No 8
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.86 E-value=0.19 Score=30.57 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=23.5
Q ss_pred CcCCCCCCCCcccccCCCCcccCCCCCCccC
Q 039395 279 CVVKGACGLNSYCSLNGTGIACFCPPGFIYI 309 (329)
Q Consensus 279 Cd~yg~CG~~giC~~~~~~~~C~C~~GF~p~ 309 (329)
|.....|..++.|........|.|++||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4445678889999764457889999999653
No 9
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=90.34 E-value=0.11 Score=34.26 Aligned_cols=33 Identities=30% Similarity=0.706 Sum_probs=25.9
Q ss_pred CCCcCC-CCCCCCcccccCCCCcccCCCCCCccC
Q 039395 277 DRCVVK-GACGLNSYCSLNGTGIACFCPPGFIYI 309 (329)
Q Consensus 277 d~Cd~y-g~CG~~giC~~~~~~~~C~C~~GF~p~ 309 (329)
|+|... ..|..++.|.....+-.|.|++||+..
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 678774 489999999753347789999999943
No 10
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=88.41 E-value=0.42 Score=29.98 Aligned_cols=31 Identities=29% Similarity=0.750 Sum_probs=23.7
Q ss_pred CCCcCCCCCCCCcccccCCCCcccCCCCCCc
Q 039395 277 DRCVVKGACGLNSYCSLNGTGIACFCPPGFI 307 (329)
Q Consensus 277 d~Cd~yg~CG~~giC~~~~~~~~C~C~~GF~ 307 (329)
++|.....|...+.|......-.|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 5676656798888997533466799999997
No 11
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=86.87 E-value=0.58 Score=28.84 Aligned_cols=32 Identities=28% Similarity=0.697 Sum_probs=23.6
Q ss_pred CCCcCCCCCCCCcccccCCCCcccCCCCCCcc
Q 039395 277 DRCVVKGACGLNSYCSLNGTGIACFCPPGFIY 308 (329)
Q Consensus 277 d~Cd~yg~CG~~giC~~~~~~~~C~C~~GF~p 308 (329)
++|.....|...+.|........|.|++||.-
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 56765457888889975334677999999864
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=86.77 E-value=0.37 Score=37.80 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=12.3
Q ss_pred CCchhHHHHHHHH--HHhhccc
Q 039395 1 MATKTFIIILFIY--MFSTSRA 20 (329)
Q Consensus 1 m~~~~~~~ll~~~--~~~~~~~ 20 (329)
||++.||+|.++| +||+++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 9999887665543 3444443
No 13
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=85.59 E-value=0.78 Score=31.40 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=27.6
Q ss_pred CCCCCcCCCCCCCCcccccCCCCcccCCCCCCccCC
Q 039395 275 DEDRCVVKGACGLNSYCSLNGTGIACFCPPGFIYID 310 (329)
Q Consensus 275 p~d~Cd~yg~CG~~giC~~~~~~~~C~C~~GF~p~~ 310 (329)
|.+.|....-|-.+++|.. ..|.|++||.+.+
T Consensus 18 ~g~~C~~~~qC~~~s~C~~----g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 18 PGESCESDEQCIGGSVCVN----GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCcCCCCCcCEEcC----CEeECCCCCEecC
Confidence 7788999999999999953 6899999998864
No 14
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=79.21 E-value=1.5 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=19.4
Q ss_pred CCCCCCcccccCCCCcccCCCCCCcc
Q 039395 283 GACGLNSYCSLNGTGIACFCPPGFIY 308 (329)
Q Consensus 283 g~CG~~giC~~~~~~~~C~C~~GF~p 308 (329)
.+|..+|.|.. ....|.|.+||.-
T Consensus 6 ~~C~~~G~C~~--~~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVS--PCGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeC--CCCEEECCCCCcC
Confidence 57999999975 2478999999864
No 15
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=78.07 E-value=0.43 Score=29.44 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=19.8
Q ss_pred CCCCCCcccccCC-CCcccCCCCCCcc
Q 039395 283 GACGLNSYCSLNG-TGIACFCPPGFIY 308 (329)
Q Consensus 283 g~CG~~giC~~~~-~~~~C~C~~GF~p 308 (329)
..|...|.|.... ....|.|++||.=
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEES
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCcc
Confidence 3788888886544 5788999999853
No 16
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=77.11 E-value=0.49 Score=30.18 Aligned_cols=27 Identities=33% Similarity=0.837 Sum_probs=19.2
Q ss_pred CCCCCCCcccccCCCCcccCCCCCCcc
Q 039395 282 KGACGLNSYCSLNGTGIACFCPPGFIY 308 (329)
Q Consensus 282 yg~CG~~giC~~~~~~~~C~C~~GF~p 308 (329)
.+-|.++..|......-.|+|.+||.-
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 456899999977445788999999964
No 17
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=76.27 E-value=0.5 Score=23.28 Aligned_cols=10 Identities=50% Similarity=1.391 Sum_probs=7.2
Q ss_pred ccCCCCCCcc
Q 039395 299 ACFCPPGFIY 308 (329)
Q Consensus 299 ~C~C~~GF~p 308 (329)
.|.|++||.-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4999999964
No 18
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.12 E-value=79 Score=30.22 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.0
Q ss_pred EecCCcEEEEecC-CCceEEeecCC-------CCceEEEEecCCCeeEecC-CCeeEEee
Q 039395 96 FSVDGSRVLLRNS-NGEVQLIAEPT-------RTAVAAAMLDSGNFVLCDS-SSQTVWAS 146 (329)
Q Consensus 96 l~~~G~L~~l~d~-~~~~vW~s~~~-------~~~~~~~l~d~GNlVl~~~-~~~~~W~S 146 (329)
...+|.|. .+|. +|+.+|..... .+.......++|.|+..|. +++.+|+.
T Consensus 247 ~~~~g~l~-a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 247 VSYQGRVA-ALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEcCCEEE-EEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 44578888 7765 68899976532 1223334456788888876 47889973
No 19
>smart00181 EGF Epidermal growth factor-like domain.
Probab=74.43 E-value=2.6 Score=25.72 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=19.1
Q ss_pred CCCCCCcccccCCCCcccCCCCCCcc
Q 039395 283 GACGLNSYCSLNGTGIACFCPPGFIY 308 (329)
Q Consensus 283 g~CG~~giC~~~~~~~~C~C~~GF~p 308 (329)
..|... .|........|.|++||+-
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 567777 8875445788999999975
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.80 E-value=95 Score=30.07 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=30.7
Q ss_pred EecCCcEEEEecC-CCceEEeecCCC-------CceEEEEecCCCeeEecC-CCeeEEee
Q 039395 96 FSVDGSRVLLRNS-NGEVQLIAEPTR-------TAVAAAMLDSGNFVLCDS-SSQTVWAS 146 (329)
Q Consensus 96 l~~~G~L~~l~d~-~~~~vW~s~~~~-------~~~~~~l~d~GNlVl~~~-~~~~~W~S 146 (329)
...+|.|. -.|. +|+++|...... +.......++|.++..|. +++.+|+.
T Consensus 262 ~~~~g~l~-ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 262 LAYNGNLV-ALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEcCCeEE-EEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 34578777 5544 588999755321 122333456777777775 47789973
No 21
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=72.21 E-value=2.3 Score=24.65 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=9.6
Q ss_pred ccCCCCCCccC
Q 039395 299 ACFCPPGFIYI 309 (329)
Q Consensus 299 ~C~C~~GF~p~ 309 (329)
.|+|++||+..
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 69999999974
No 22
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=70.70 E-value=2.5 Score=26.56 Aligned_cols=19 Identities=37% Similarity=0.903 Sum_probs=14.0
Q ss_pred ccccCCCCcccCCCCCCccC
Q 039395 290 YCSLNGTGIACFCPPGFIYI 309 (329)
Q Consensus 290 iC~~~~~~~~C~C~~GF~p~ 309 (329)
.|+. ++...|.||.||...
T Consensus 11 ~CDp-n~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDP-NSPGQCFCPEGYILD 29 (34)
T ss_pred ccCC-CCCCceeCCCceEec
Confidence 4654 456689999999764
No 23
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=69.75 E-value=5.3 Score=30.29 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=7.9
Q ss_pred cEEEEecCCCceEEe
Q 039395 101 SRVLLRNSNGEVQLI 115 (329)
Q Consensus 101 ~L~~l~d~~~~~vW~ 115 (329)
+++ |+|.+|+.||.
T Consensus 27 D~~-v~d~~g~~vwr 40 (82)
T PF12690_consen 27 DFV-VKDKEGKEVWR 40 (82)
T ss_dssp EEE-EE-TT--EEEE
T ss_pred EEE-EECCCCCEEEE
Confidence 466 77778888875
No 24
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=69.63 E-value=16 Score=35.55 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=35.3
Q ss_pred ceEEEe-cCCcEEEEecC-CCceEEeecCC----C-----CceEEEEecCCCeeEecC-CCeeEEee
Q 039395 92 AALQFS-VDGSRVLLRNS-NGEVQLIAEPT----R-----TAVAAAMLDSGNFVLCDS-SSQTVWAS 146 (329)
Q Consensus 92 ~~l~l~-~~G~L~~l~d~-~~~~vW~s~~~----~-----~~~~~~l~d~GNlVl~~~-~~~~~W~S 146 (329)
..+.+. .+|.|. -.|. +|+++|+.... . .........+|.|+-+|. +|+++|+-
T Consensus 121 ~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 121 GKVYIGSEKGQVY-ALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CEEEEEcCCCEEE-EEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 344444 578887 6664 69999986642 1 122333456778888886 58999984
No 25
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=69.22 E-value=21 Score=31.26 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=43.6
Q ss_pred CcEEEEcCC----CCCc--c-CCcceEEE-ecCCcEEEEecC-CCceEEeecCC-C--------CceEEEEecCCCeeEe
Q 039395 75 IIDVWTARR----TDPV--V-SSGAALQF-SVDGSRVLLRNS-NGEVQLIAEPT-R--------TAVAAAMLDSGNFVLC 136 (329)
Q Consensus 75 ~~~vW~anr----~~p~--~-~~~~~l~l-~~~G~L~~l~d~-~~~~vW~s~~~-~--------~~~~~~l~d~GNlVl~ 136 (329)
...+|..+- ..++ . ..+..+.+ +.+|.|+ .+|. +|+.+|+.... . .........+|.|+.+
T Consensus 13 G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 13 GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLY-ALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYAL 91 (238)
T ss_dssp TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEE-EEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEE-EEECCCCCEEEEeeccccccceeeecccccccccceeeeEec
Confidence 677887743 2222 0 02333444 4789999 8885 89999987643 1 1122333345667777
Q ss_pred c-CCCeeEEee
Q 039395 137 D-SSSQTVWAS 146 (329)
Q Consensus 137 ~-~~~~~~W~S 146 (329)
| .+|+++|+.
T Consensus 92 d~~tG~~~W~~ 102 (238)
T PF13360_consen 92 DAKTGKVLWSI 102 (238)
T ss_dssp ETTTSCEEEEE
T ss_pred ccCCcceeeee
Confidence 7 679999995
No 26
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.01 E-value=21 Score=34.27 Aligned_cols=70 Identities=11% Similarity=0.267 Sum_probs=42.2
Q ss_pred CcEEEEcCCCC-----CccCCcceEEE-ecCCcEEEEecC-CCceEEeecCCCC---------ceEEEEecCCCeeEecC
Q 039395 75 IIDVWTARRTD-----PVVSSGAALQF-SVDGSRVLLRNS-NGEVQLIAEPTRT---------AVAAAMLDSGNFVLCDS 138 (329)
Q Consensus 75 ~~~vW~anr~~-----p~~~~~~~l~l-~~~G~L~~l~d~-~~~~vW~s~~~~~---------~~~~~l~d~GNlVl~~~ 138 (329)
..++|..+-.. |+. .+..+.+ +.+|.|. ..|. +|+.+|+...... .....-..+|.|+.+|.
T Consensus 85 G~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~-ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~ 162 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVI-ALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDA 162 (377)
T ss_pred CcEeeeecCCCCcccceEE-cCCEEEEEcCCCEEE-EEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEc
Confidence 67888765433 322 2334444 3578777 6665 6888997665521 11233345677777777
Q ss_pred C-CeeEEee
Q 039395 139 S-SQTVWAS 146 (329)
Q Consensus 139 ~-~~~~W~S 146 (329)
. ++.+|+-
T Consensus 163 ~tG~~~W~~ 171 (377)
T TIGR03300 163 ATGERLWTY 171 (377)
T ss_pred CCCceeeEE
Confidence 4 7888885
No 27
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.85 E-value=43 Score=29.29 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCccC----CcceE-EEecCCcEEEEec-CCCceEEee-cCC----C----------CceEEEEecCCCe
Q 039395 75 IIDVWTARRTDPVVS----SGAAL-QFSVDGSRVLLRN-SNGEVQLIA-EPT----R----------TAVAAAMLDSGNF 133 (329)
Q Consensus 75 ~~~vW~anr~~p~~~----~~~~l-~l~~~G~L~~l~d-~~~~~vW~s-~~~----~----------~~~~~~l~d~GNl 133 (329)
.+++|...-..++.. ....+ ....+|.|. ..| .+|+++|.. ... . +...+....+|.|
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~-~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY-ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL 134 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE-EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeE-ecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcE
Confidence 789999876554331 23333 444677788 777 789999983 211 1 1122333448999
Q ss_pred eEecC-CCeeEEee
Q 039395 134 VLCDS-SSQTVWAS 146 (329)
Q Consensus 134 Vl~~~-~~~~~W~S 146 (329)
+.+|. +|+++|+-
T Consensus 135 ~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 135 VALDPKTGKLLWKY 148 (238)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99994 59999984
No 28
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=59.56 E-value=7.2 Score=41.64 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=33.1
Q ss_pred CCCcCCCCCCCCcccccCCCCcccCCCCCCccCCCCCCCCCcccC-CCCCCC
Q 039395 277 DRCVVKGACGLNSYCSLNGTGIACFCPPGFIYIDPEKPQEGCKLN-STIEDC 327 (329)
Q Consensus 277 d~Cd~yg~CG~~giC~~~~~~~~C~C~~GF~p~~~~~~s~GC~r~-~~l~~C 327 (329)
|+|. +..|-++..|-++.++-.|+|.|||.-. ..-|++. .++..|
T Consensus 828 DeC~-psrChp~A~CyntpgsfsC~C~pGy~GD-----Gf~CVP~~~~~T~C 873 (1289)
T KOG1214|consen 828 DECS-PSRCHPAATCYNTPGSFSCRCQPGYYGD-----GFQCVPDTSSLTPC 873 (1289)
T ss_pred cccC-ccccCCCceEecCCCcceeecccCccCC-----CceecCCCccCCcc
Confidence 6777 8999999999764457889999999753 2457776 344444
No 29
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.12 E-value=49 Score=31.05 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCCccCC----cceEEE-ecCCcEEEEecCCCceEEeecC
Q 039395 75 IIDVWTARRTDPVVSS----GAALQF-SVDGSRVLLRNSNGEVQLIAEP 118 (329)
Q Consensus 75 ~~~vW~anr~~p~~~~----~~~l~l-~~~G~L~~l~d~~~~~vW~s~~ 118 (329)
.+..|.|.|..|+-.+ +....+ +-||+|. -.|+.|+.||.-.+
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~-~f~~sG~qvwr~~t 216 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLT-SFDESGRQVWRPAT 216 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEE-EEcCCCcEEEeecC
Confidence 5889999999998643 223333 4689998 88999999996443
No 30
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=48.58 E-value=18 Score=25.69 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHhh
Q 039395 1 MATKTFIIILFIYMFST 17 (329)
Q Consensus 1 m~~~~~~~ll~~~~~~~ 17 (329)
||+++|++-|+++.|..
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 99999888777655443
No 31
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=46.58 E-value=27 Score=21.99 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=2.6
Q ss_pred ceEEeec
Q 039395 111 EVQLIAE 117 (329)
Q Consensus 111 ~~vW~s~ 117 (329)
+++|+..
T Consensus 2 ~~~W~~~ 8 (40)
T PF13570_consen 2 KVLWSYD 8 (40)
T ss_dssp -EEEEEE
T ss_pred ceeEEEE
Confidence 3444433
No 32
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.87 E-value=30 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=15.0
Q ss_pred eEEEecCCcEEEEecCCCceEE
Q 039395 93 ALQFSVDGSRVLLRNSNGEVQL 114 (329)
Q Consensus 93 ~l~l~~~G~L~~l~d~~~~~vW 114 (329)
.+.+..+|++. +.|..+..||
T Consensus 6 gvav~~~g~i~-VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIY-VADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEE-EEECCCTEEE
T ss_pred EEEEeCCCCEE-EEECCCCEEE
Confidence 46677888888 8877666665
No 33
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=45.21 E-value=13 Score=39.73 Aligned_cols=44 Identities=27% Similarity=0.599 Sum_probs=32.3
Q ss_pred CCCcC-CCCCCCCcccccCCCCcccCCCCCCccCCCCCCCCCcccCCC
Q 039395 277 DRCVV-KGACGLNSYCSLNGTGIACFCPPGFIYIDPEKPQEGCKLNST 323 (329)
Q Consensus 277 d~Cd~-yg~CG~~giC~~~~~~~~C~C~~GF~p~~~~~~s~GC~r~~~ 323 (329)
+.|.. +-.||++.+|.+...+-.|+|-.||+..+. ..-|+..++
T Consensus 735 ~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd---~~tCV~i~~ 779 (1289)
T KOG1214|consen 735 NECATGFHRCGPNSVCINLPGSYRCECRSGYEFADD---RHTCVLITP 779 (1289)
T ss_pred hhhccCCCCCCCCceeecCCCceeEEEeecceeccC---CcceEEecC
Confidence 34544 677999999987444788999999988664 345776553
No 34
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=43.05 E-value=47 Score=33.54 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred CcEEEEecCCCceEEeecCC-CCceEEEEecCCCeeEecC--------CCeeEEeecCCCCCc--------cccCcccCC
Q 039395 100 GSRVLLRNSNGEVQLIAEPT-RTAVAAAMLDSGNFVLCDS--------SSQTVWASFDHPTDT--------LLVSQKLAK 162 (329)
Q Consensus 100 G~L~~l~d~~~~~vW~s~~~-~~~~~~~l~d~GNlVl~~~--------~~~~~W~SFd~PtDt--------llpgq~L~~ 162 (329)
+... ++|.+|.++|.-... .....+..+++|+|..... .|+++|+ ++.|... .+|..+
T Consensus 128 ~~~~-~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~~~~~HHD~~~l~nGn--- 202 (477)
T PF05935_consen 128 SYTY-LIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGGYYDFHHDIDELPNGN--- 202 (477)
T ss_dssp EEEE-EEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TTEE-B-S-EEE-TTS----
T ss_pred ceEE-EECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCcccccccccEECCCCC---
Confidence 4566 788888888865543 1111267788888775443 4778887 5544421 222211
Q ss_pred CceeeecC------CCCCCCCceEEEEEccCCceeEE
Q 039395 163 DSELYSSM------SLTNQSIGNFKLLMQSDGNLNAF 193 (329)
Q Consensus 163 ~~~L~Sw~------s~~dps~G~y~l~~~~~g~~~l~ 193 (329)
..+.++. ......-++..++++++|.++-.
T Consensus 203 -~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~ 238 (477)
T PF05935_consen 203 -LLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWE 238 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEE
T ss_pred -EEEEEeecccccCCCCccEecCEEEEECCCCCEEEE
Confidence 1122331 12233456788888888876544
No 35
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=41.19 E-value=7.5 Score=24.72 Aligned_cols=21 Identities=29% Similarity=0.803 Sum_probs=12.9
Q ss_pred ccccCCCCcccCCCCCCccCC
Q 039395 290 YCSLNGTGIACFCPPGFIYID 310 (329)
Q Consensus 290 iC~~~~~~~~C~C~~GF~p~~ 310 (329)
+|........|+|++||....
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKLAE 31 (36)
T ss_dssp EEEEETTSEEEE-STTEEE-T
T ss_pred CCccCCCceEeECCCCCEECc
Confidence 343323368899999998754
No 36
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.45 E-value=1.2e+02 Score=30.71 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=42.8
Q ss_pred CcEEEEcCCC-------CCccCCcceEEEe-cCCcEEEEecC-CCceEEeecCC-C----------------C-ceEEEE
Q 039395 75 IIDVWTARRT-------DPVVSSGAALQFS-VDGSRVLLRNS-NGEVQLIAEPT-R----------------T-AVAAAM 127 (329)
Q Consensus 75 ~~~vW~anr~-------~p~~~~~~~l~l~-~~G~L~~l~d~-~~~~vW~s~~~-~----------------~-~~~~~l 127 (329)
.+++|..+-. .|+. .+.++.+. .+|.|. -+|. .|+++|+.... . . ..+..-
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv-~~g~vy~~~~~g~l~-AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~ 116 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLV-VDGDMYFTTSHSALF-ALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG 116 (488)
T ss_pred ceeeEEEECCCCCCcccCCEE-ECCEEEEeCCCCcEE-EEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe
Confidence 5677877543 3554 34455554 578888 6664 68999976532 1 0 111122
Q ss_pred ecCCCeeEecC-CCeeEEee
Q 039395 128 LDSGNFVLCDS-SSQTVWAS 146 (329)
Q Consensus 128 ~d~GNlVl~~~-~~~~~W~S 146 (329)
..+|.++-+|. +|+.+|+-
T Consensus 117 ~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 117 TFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred cCCCeEEEEECCCCCEeeee
Confidence 34778888886 48999983
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=35.91 E-value=2.7e+02 Score=29.97 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=39.4
Q ss_pred CcceEEEecCCcEEEEecC-CCce-EEeecCC----------CCceEEEEecCCCeeEecC-CCee-EEe
Q 039395 90 SGAALQFSVDGSRVLLRNS-NGEV-QLIAEPT----------RTAVAAAMLDSGNFVLCDS-SSQT-VWA 145 (329)
Q Consensus 90 ~~~~l~l~~~G~L~~l~d~-~~~~-vW~s~~~----------~~~~~~~l~d~GNlVl~~~-~~~~-~W~ 145 (329)
.-..+...+||.++ .... +|++ ||.+... .++++++..-+||.+|... +|+| .|.
T Consensus 352 ~i~~l~YSpDgq~i-aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 352 RITSLAYSPDGQLI-ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeEEECCCCcEE-EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 34568888999998 7643 4665 9976642 4677889999999999865 4553 454
No 38
>PHA02887 EGF-like protein; Provisional
Probab=35.62 E-value=28 Score=28.34 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCCCCc--CCCCCCCCcccccCC--CCcccCCCCCCcc
Q 039395 275 DEDRCV--VKGACGLNSYCSLNG--TGIACFCPPGFIY 308 (329)
Q Consensus 275 p~d~Cd--~yg~CG~~giC~~~~--~~~~C~C~~GF~p 308 (329)
--.+|. ..++|= +|.|.+.. ..+.|.|++||.-
T Consensus 82 hf~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG 118 (126)
T PHA02887 82 FFEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTG 118 (126)
T ss_pred CccccChHhhCEee-CCEEEccccCCCceeECCCCccc
Confidence 456785 477888 89997633 3799999999943
No 39
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=35.54 E-value=1.1e+02 Score=27.12 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=29.5
Q ss_pred EeeCCCeEEEEeecC-CCceE-EEEEecccCCCCCCcEEEEcCCCCCccCCcceEEEecCCcEEEEecCCCce
Q 039395 42 WPSPSGHFAFGFYPT-GNGFK-AGIWLIGSGPANDIIDVWTARRTDPVVSSGAALQFSVDGSRVLLRNSNGEV 112 (329)
Q Consensus 42 l~S~~g~f~lgf~~~-~~~~~-l~i~~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~d~~~~~ 112 (329)
+-|-+++|.-.-... +...+ .-++++ + | +...|.-.+..+ ..+-.||+-+|++|++...
T Consensus 39 i~~~s~~f~q~~~~g~~~~~~~g~~~~k-k-P---~~~R~~~~~p~~-------~~ivsdG~~v~iydp~~~q 99 (211)
T COG2834 39 VKSYSASFTQTVESGSGKQTQEGKLWIK-R-P---NLFRWEYESPDE-------QVIVSDGKTVWIYDPDLEQ 99 (211)
T ss_pred hccceeEEEEEEEcCCCceEEEEEEEEe-c-C---CeEEEEecCCCC-------cEEEECCCEEEEECCCCce
Confidence 444444554444432 22233 334554 2 4 466776555322 1344577777788776533
No 40
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=34.12 E-value=7.5 Score=24.98 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=17.3
Q ss_pred CCCCCCcccccCC-CCcccCCCCCCccC
Q 039395 283 GACGLNSYCSLNG-TGIACFCPPGFIYI 309 (329)
Q Consensus 283 g~CG~~giC~~~~-~~~~C~C~~GF~p~ 309 (329)
..|-.|+-|.... ....|.|++||+-.
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 5677888885433 37889999999874
No 41
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=33.86 E-value=41 Score=28.30 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=18.8
Q ss_pred CCchhHHHHHHHHHHhhcccccCcccccCCCcee
Q 039395 1 MATKTFIIILFIYMFSTSRAQTPQSNITTGSTLY 34 (329)
Q Consensus 1 m~~~~~~~ll~~~~~~~~~~~~~~~~l~~g~~l~ 34 (329)
|-+..+++++++++++..++++....|.+|++=.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~ 34 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEV 34 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEE
Confidence 5544544444433333444555666788888754
No 42
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=33.07 E-value=11 Score=33.24 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=25.7
Q ss_pred CCCCCcC----CCCCCCCcccccCC-----CCcccCCCCCCccCCCCCCCCCcccC
Q 039395 275 DEDRCVV----KGACGLNSYCSLNG-----TGIACFCPPGFIYIDPEKPQEGCKLN 321 (329)
Q Consensus 275 p~d~Cd~----yg~CG~~giC~~~~-----~~~~C~C~~GF~p~~~~~~s~GC~r~ 321 (329)
+...|+. .-.||.|+.|.... ..-.|.|.+||.... +=|++.
T Consensus 38 ~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~-----~vCvp~ 88 (197)
T PF06247_consen 38 EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQ-----GVCVPN 88 (197)
T ss_dssp E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESS-----SSEEEG
T ss_pred cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeC-----CeEchh
Confidence 3445654 67899999996532 146799999998863 346654
No 43
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=2.6e+02 Score=27.60 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred CcEEEEcCCC-CCccCCcceEEEecCCcEEEEecCC--CceEEeecCC-CCceEEEEecCCCeeEecCCCeeEEeecCCC
Q 039395 75 IIDVWTARRT-DPVVSSGAALQFSVDGSRVLLRNSN--GEVQLIAEPT-RTAVAAAMLDSGNFVLCDSSSQTVWASFDHP 150 (329)
Q Consensus 75 ~~~vW~anr~-~p~~~~~~~l~l~~~G~L~~l~d~~--~~~vW~s~~~-~~~~~~~l~d~GNlVl~~~~~~~~W~SFd~P 150 (329)
..+||...-. -|-.....-++++.-|.+. +||.. .+||=+..-. ...+.+.|..+||+|+.......+ .+||+-
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR-~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l-~~FD~r 277 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVR-LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL-AKFDLR 277 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEE-EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh-heeccc
Confidence 5567765432 1211134467888899999 99875 4677654433 456788999999998876442223 578876
Q ss_pred CCc
Q 039395 151 TDT 153 (329)
Q Consensus 151 tDt 153 (329)
+-.
T Consensus 278 ~~k 280 (412)
T KOG3881|consen 278 GGK 280 (412)
T ss_pred Cce
Confidence 533
No 44
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=29.51 E-value=1.2e+02 Score=30.17 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=34.7
Q ss_pred CeEeeCCCeEEE-EeecCCCceEEEEEecccCCCCCCcEEEEcCCCCCccCCcceEEEecCCcEEEEecCC
Q 039395 40 NFWPSPSGHFAF-GFYPTGNGFKAGIWLIGSGPANDIIDVWTARRTDPVVSSGAALQFSVDGSRVLLRNSN 109 (329)
Q Consensus 40 ~~l~S~~g~f~l-gf~~~~~~~~l~i~~~~~~~~~~~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~d~~ 109 (329)
+.+.||||.=.| -|+.+....|+-+-|+ -|. +. -..|+... -..+.+||.|+ +....
T Consensus 311 r~vrSPNGEDvLYvF~~~~~g~~~Ll~YN-~I~---k~------v~tPi~ch--G~alf~DG~l~-~fra~ 368 (448)
T PF12458_consen 311 RKVRSPNGEDVLYVFYAREEGRYLLLPYN-LIR---KE------VATPIICH--GYALFEDGRLV-YFRAE 368 (448)
T ss_pred EEecCCCCceEEEEEEECCCCcEEEEech-hhh---hh------hcCCeecc--ceeEecCCEEE-EEecC
Confidence 457889885444 5555666667767776 433 11 13476632 36667899998 76544
No 45
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=28.32 E-value=74 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=7.8
Q ss_pred EEEecCCCeeEecCCC
Q 039395 125 AAMLDSGNFVLCDSSS 140 (329)
Q Consensus 125 ~~l~d~GNlVl~~~~~ 140 (329)
.-+.++|.|+|+.+++
T Consensus 20 ~gId~~G~L~v~~~~g 35 (48)
T PF02237_consen 20 EGIDDDGALLVRTEDG 35 (48)
T ss_dssp EEEETTSEEEEEETTE
T ss_pred EEECCCCEEEEEECCC
Confidence 3445555555554444
No 46
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=27.71 E-value=63 Score=23.74 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=10.0
Q ss_pred eeEecCCCeeEEeecCC
Q 039395 133 FVLCDSSSQTVWASFDH 149 (329)
Q Consensus 133 lVl~~~~~~~~W~SFd~ 149 (329)
||++|.+|..+|..+.+
T Consensus 35 lvvRd~~g~mvWRaWNF 51 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNF 51 (70)
T ss_dssp EEEE-SS--EEEEEESS
T ss_pred EEEEcCCCcEEEEeecc
Confidence 67777777788876654
No 47
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=27.63 E-value=1.9e+02 Score=28.61 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=27.0
Q ss_pred CcEEEEecCCCceEEeecCC---CCceEEEEecCCCeeEecCCCeeEEe
Q 039395 100 GSRVLLRNSNGEVQLIAEPT---RTAVAAAMLDSGNFVLCDSSSQTVWA 145 (329)
Q Consensus 100 G~L~~l~d~~~~~vW~s~~~---~~~~~~~l~d~GNlVl~~~~~~~~W~ 145 (329)
|+++ +.+.+|..-|..... .....+...++|.++|....+.++|.
T Consensus 259 G~~~-~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S 306 (398)
T PLN00033 259 GNFY-LTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS 306 (398)
T ss_pred ccEE-EecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe
Confidence 4443 333345555653322 23345566789999999888777665
No 48
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=27.38 E-value=3.1e+02 Score=22.11 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=30.4
Q ss_pred CcceEEEecCCcEEEEecCCCce------EEeecC-----------C--CCceEEEEecCCCeeEecCCCe
Q 039395 90 SGAALQFSVDGSRVLLRNSNGEV------QLIAEP-----------T--RTAVAAAMLDSGNFVLCDSSSQ 141 (329)
Q Consensus 90 ~~~~l~l~~~G~L~~l~d~~~~~------vW~s~~-----------~--~~~~~~~l~d~GNlVl~~~~~~ 141 (329)
+...|.|..||.|+ |..+++.- -|+-.. + ..-....-+++|-|||.|+++.
T Consensus 34 ~~~~leF~~dGKL~-v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg~ 103 (111)
T TIGR03066 34 DDVVIEFAKDGKLV-VTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDGK 103 (111)
T ss_pred CceEEEEcCCCeEE-EecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCCC
Confidence 35678888999988 77655432 132110 0 0111223478899999998865
No 49
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=26.41 E-value=1.5e+02 Score=19.91 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=13.9
Q ss_pred CeEeeCCCeEEEEeecCCCceEE
Q 039395 40 NFWPSPSGHFAFGFYPTGNGFKA 62 (329)
Q Consensus 40 ~~l~S~~g~f~lgf~~~~~~~~l 62 (329)
+-+.|++|.|+--|..++-.+||
T Consensus 3 ~~~~~~nGvFAN~F~~~GitWYf 25 (45)
T PF12197_consen 3 KCMYSSNGVFANSFSDDGITWYF 25 (45)
T ss_dssp EEEEETT-----EEEETTEEEEE
T ss_pred EEEEcCCCceEEEEEcCCcEEEE
Confidence 35689999999999998766666
No 50
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=25.17 E-value=90 Score=19.43 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=13.9
Q ss_pred ecCCCeeEecCC-CeeEEe
Q 039395 128 LDSGNFVLCDSS-SQTVWA 145 (329)
Q Consensus 128 ~d~GNlVl~~~~-~~~~W~ 145 (329)
..+|.|+-+|.+ |+++|+
T Consensus 7 ~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TTTSEEEEEETTTTSEEEE
T ss_pred CCCCEEEEEECCCCCEEEe
Confidence 667888888864 788887
No 51
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=25.06 E-value=5.8e+02 Score=23.99 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=17.6
Q ss_pred cccCCCceeeecCCCCCCCCceEEEEEccCCceeE
Q 039395 158 QKLAKDSELYSSMSLTNQSIGNFKLLMQSDGNLNA 192 (329)
Q Consensus 158 q~L~~~~~L~Sw~s~~dps~G~y~l~~~~~g~~~l 192 (329)
|+|.-|..|+.| ....+.++++++|.++.
T Consensus 266 Q~L~nGn~li~~------g~~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 266 QRLPNGNVLIGW------GNNGRISEFTPDGEVVW 294 (299)
T ss_pred eECCCCCEEEec------CCCceEEEECCCCCEEE
Confidence 445556677776 34456666777776554
No 52
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=24.65 E-value=1.2e+02 Score=23.52 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCCccCCcceEEEecCCcEEEEe
Q 039395 75 IIDVWTARRTDPVVSSGAALQFSVDGSRVLLR 106 (329)
Q Consensus 75 ~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~ 106 (329)
.++.|+-+....+. ....+.+..+|+|. +.
T Consensus 34 P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~-fs 63 (95)
T cd05845 34 LRIYWMNSDLLHIT-QDERVSMGQNGNLY-FA 63 (95)
T ss_pred CEEEEECCCCcccc-ccccEEECCCceEE-EE
Confidence 67888854433343 35567777778887 54
No 53
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=23.19 E-value=78 Score=25.09 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=34.8
Q ss_pred cCCcEEEEEeeCCCCCCcceeeEEEEecC-------CCCCcCCCCCCCCcccccCCCCcccC-CCCCCccCCCCCCCCCc
Q 039395 247 VNGTTLLYQHQIGTSGSFSSKILWVAIVD-------EDRCVVKGACGLNSYCSLNGTGIACF-CPPGFIYIDPEKPQEGC 318 (329)
Q Consensus 247 ~dG~l~~y~w~~~~~~~W~~~~~w~~~~p-------~d~Cd~yg~CG~~giC~~~~~~~~C~-C~~GF~p~~~~~~s~GC 318 (329)
.||+++.|.|..+ ...-+ ++....| -|.|++ ||+-|+=-. .+.-.|. |=--|....-....+||
T Consensus 3 ~Dgklh~y~y~~~-G~~vr---ff~i~~~dg~~~va~daCei---C~~~GY~q~-g~~lvC~~C~~~~~~~~ig~~~GGC 74 (102)
T PF10080_consen 3 KDGKLHRYAYTDD-GKEVR---FFAIKKPDGSYRVAFDACEI---CGPKGYYQE-GDQLVCKNCGVRFNLPTIGGKSGGC 74 (102)
T ss_pred cCCcEEEEEEcCC-CEEEE---EEEEECCCCCEEEEEEeccc---cCCCceEEE-CCEEEEecCCCEEehhhcccccCCC
Confidence 4677777777433 22111 2222112 255774 777775533 3345565 64445444444457899
Q ss_pred ccC
Q 039395 319 KLN 321 (329)
Q Consensus 319 ~r~ 321 (329)
-|-
T Consensus 75 NP~ 77 (102)
T PF10080_consen 75 NPI 77 (102)
T ss_pred Ccc
Confidence 764
No 54
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.13 E-value=3.4e+02 Score=25.91 Aligned_cols=70 Identities=13% Similarity=0.240 Sum_probs=42.4
Q ss_pred CcEEEEcCC-------CCCccCCcceEEEe-cCCcEEEEecC-CCceEEeecCCC-----C-----ceEEEEe-cCCCee
Q 039395 75 IIDVWTARR-------TDPVVSSGAALQFS-VDGSRVLLRNS-NGEVQLIAEPTR-----T-----AVAAAML-DSGNFV 134 (329)
Q Consensus 75 ~~~vW~anr-------~~p~~~~~~~l~l~-~~G~L~~l~d~-~~~~vW~s~~~~-----~-----~~~~~l~-d~GNlV 134 (329)
..++|.-.- ..|+....+++.+. .+|.|. -+|. +|..+|+.+... + ...+... ++|+++
T Consensus 88 g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y-~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~ 166 (370)
T COG1520 88 GLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLY-ALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLY 166 (370)
T ss_pred CcEEecccCcCcceeccCceEEeCCeEEEecccceEE-EEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEE
Confidence 456784332 22443334555555 467666 6677 799999765422 1 1122333 689999
Q ss_pred EecCC-CeeEEe
Q 039395 135 LCDSS-SQTVWA 145 (329)
Q Consensus 135 l~~~~-~~~~W~ 145 (329)
-.+.+ ++.+|+
T Consensus 167 al~~~tG~~~W~ 178 (370)
T COG1520 167 ALNADTGTLKWT 178 (370)
T ss_pred EEEccCCcEEEE
Confidence 88877 899998
No 55
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=22.79 E-value=1.6e+02 Score=26.77 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=13.2
Q ss_pred eeeecCCCCC----CCCceEEEEEcc
Q 039395 165 ELYSSMSLTN----QSIGNFKLLMQS 186 (329)
Q Consensus 165 ~L~Sw~s~~d----ps~G~y~l~~~~ 186 (329)
.-..|...++ ..+|.|++++..
T Consensus 153 ~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 153 VSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred eeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 3345544333 457899998863
No 56
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=20.90 E-value=1.2e+02 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.406 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCCccCCcceEEEecCCcEEEEec
Q 039395 75 IIDVWTARRTDPVVSSGAALQFSVDGSRVLLRN 107 (329)
Q Consensus 75 ~~~vW~anr~~p~~~~~~~l~l~~~G~L~~l~d 107 (329)
.+..|+.-.+.++. ..+.+.|++.|.|+ +.|
T Consensus 13 P~y~W~GP~g~~l~-gn~~~nIT~TG~L~-~~~ 43 (271)
T PF07354_consen 13 PTYLWTGPNGKPLS-GNSYVNITETGKLM-FKN 43 (271)
T ss_pred CceEEECCCCcccC-CCCeEEEccCceEE-eec
Confidence 78899998888887 57789999999999 865
No 57
>PF05092 PIF: Per os infectivity; InterPro: IPR007784 This entry represents a group of dsDNA Baculovirus proteins. It is required for the infectivity of the OBs or occlusion bodies. It is a structural protein of the ODV envelope required only in the first steps of per os larva infection, as viruses being produced in cells expressing the gene for this protein but not containing it in their genomes are able to produce successful infections. Baculoviruses are large DNA viruses that infect arthropods, mainly members of the order Lepidoptera. In their life cycle, they produce two kinds of particles, a budded, non-occluded virus (BV), which buds out of the infected cell and is responsible for the cell-to-cell transmission of the virus, and an occluded form, the occlusion body (OB), which is responsible for protecting the virus between encounters with larvae. A variable number of virions are included in the para-crystalline structure of the OB, mainly constituted by the virus-encoded polyhedrin protein; these virions are called occlusion body-derived virions or ODVs [].
Probab=20.87 E-value=66 Score=32.81 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCcCCCCCCCCcccccCCC-CcccCCCCCCccCC-CCCCCCCcccC
Q 039395 277 DRCVVKGACGLNSYCSLNGT-GIACFCPPGFIYID-PEKPQEGCKLN 321 (329)
Q Consensus 277 d~Cd~yg~CG~~giC~~~~~-~~~C~C~~GF~p~~-~~~~s~GC~r~ 321 (329)
+.|+++--|.|+|.=...+. ...|.|-.||.+.. ...-+.=|+++
T Consensus 149 ~DC~vpVGC~PhG~I~din~~pi~C~Cd~GyVsd~~~~t~tP~CRp~ 195 (522)
T PF05092_consen 149 EDCDVPVGCQPHGRIADINESPIRCVCDDGYVSDFDSDTETPYCRPR 195 (522)
T ss_pred ccCCCcEecCCCCEEeeecCCceEeECCCCcccccccCCCCcceece
Confidence 56999999999997643233 66799999998863 33345566655
No 58
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.38 E-value=2.5e+02 Score=19.52 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=21.7
Q ss_pred ceEEEecCCcEEEEecCCCceEEeecCCCCceEEEEecCCCe
Q 039395 92 AALQFSVDGSRVLLRNSNGEVQLIAEPTRTAVAAAMLDSGNF 133 (329)
Q Consensus 92 ~~l~l~~~G~L~~l~d~~~~~vW~s~~~~~~~~~~l~d~GNl 133 (329)
..+.+++||+++ +... .+..........+++.-||.|
T Consensus 4 ~~~~~q~DGkIl-v~G~----~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 4 YAVAVQSDGKIL-VAGY----VDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred EEEEECCCCcEE-EEEE----eecCCCcccEEEEEECCCCCc
Confidence 457788888887 6521 111111134567788888876
Done!