BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039398
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 61 QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120
QG A+E + AL + G+A +K+ G D AI+ +A+
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL 70
Query: 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
++ +N +A LG Y + DEA Y+ AL+++P+
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
+ G D AI+ +A+++ +N +A LG Y + DEA Y+ AL+++P+
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 44 DYKDAAAHILKALALDL---------------QGFKTSALESFDLALSIPAVKTLTEKEK 88
DY +A + KAL LD QG A+E + AL +
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 89 GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKT 148
G+A +K+ G D AI+ +A+++ + +A LG Y + DEA
Sbjct: 76 GNAYYKQ-----------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 149 AYESALKIEP 158
Y+ AL+++P
Sbjct: 125 YYQKALELDP 134
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 61 QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120
QG A+E + AL + G+A +K+ G D AI+ +A+
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL 62
Query: 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158
++ + +A LG Y + DEA Y+ AL+++P
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158
+ G D AI+ +A+++ + +A LG Y + DEA Y+ AL+++P
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
+ G D AI+ +A+++ +N +A LG Y + DEA Y+ AL+++P+
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163
G +D AID A+++Q A C L + K EA+ Y +AL++ P+ D+
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160
S++ + R+D + T A+K +A LG Y+ + EA Y AL+++P +
Sbjct: 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Query: 161 TDA 163
D
Sbjct: 101 IDG 103
>pdb|3LY9|A Chain A, Crystal Structure Of Mutant D471n Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 131 CLLGECYEVKKMRDEAKTAYESALKIEP 158
LLG+ YE+K M EA AY +A + P
Sbjct: 314 VLLGKVYEMKGMNREAANAYLTAFNLRP 341
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 39 KAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEV 98
KA+ D +A+A A QG A+E + AL + +G+A +K+
Sbjct: 34 KALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQ--- 90
Query: 99 KMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGEC 136
G AI+D +A+++ +N KA LG
Sbjct: 91 --------GDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 61 QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120
QG A+E + AL + G+A +K+ G AI+ +A+
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQ-----------GDYQKAIEYYQKAL 70
Query: 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
++ +N KA G Y + +A Y+ AL+++P+
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
>pdb|3LY8|A Chain A, Crystal Structure Of Mutant D471e Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 131 CLLGECYEVKKMRDEAKTAYESALKIEP 158
LLG+ YE+K M EA AY +A + P
Sbjct: 314 VLLGKVYEMKGMNREAAEAYLTAFNLRP 341
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150
A ++RA V ++M G+ +A+ DLT+ ++++ D A G + DEA+ +
Sbjct: 62 AYYRRATVFLAM----GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117
Query: 151 ESALKIEPSWTDAQAALDRLV 171
+ LK PS + + A +L+
Sbjct: 118 KKVLKSNPSENEEKEAQSQLI 138
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153
AI +E ++++ DNV AL E Y +++M DEA YE+A
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355
>pdb|3LY7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc
pdb|3LYA|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc In The
Presence Of K2recl6
Length = 372
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 131 CLLGECYEVKKMRDEAKTAYESALKIEP 158
LLG+ YE+K M EA AY +A + P
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRP 341
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 90 DALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEA 146
DA +K V SM G D AI+ + + I+ ++A +G YE K +RDEA
Sbjct: 108 DAYYKLGLVYDSM----GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
M+ ++ GR + L + K +D+ A LG Y + ++AK AL+I+PS
Sbjct: 24 MTGGQQMGRTSGDQNPL-KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 82
Query: 160 WTDAQAAL 167
DA AAL
Sbjct: 83 SADAHAAL 90
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158
+ G D AI+ +A+++ + +A LG Y + DEA Y+ AL+++P
Sbjct: 15 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160
+G D A+D T A+ ++ ++ LG +EA AY AL+++P +
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 244
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160
+G D A+D T A+ ++ ++ LG +EA AY AL+++P +
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 244
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160
+G D A+D T A+ ++ ++ LG +EA AY AL+++P +
Sbjct: 167 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 221
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165
+G D A+D T A+ ++ ++ LG +EA AY AL+++P + ++
Sbjct: 181 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 240
Query: 166 AL 167
L
Sbjct: 241 NL 242
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 68 LESFDLALSIPAVKTLTEKEKGD-ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126
L+ +D A+ + LTE+EK ALF+R + K + G++DSA DD +A K D+
Sbjct: 243 LKRYDEAIGHCNI-VLTEEEKNPKALFRRGKAKAEL----GQMDSARDDFRKAQKYAPDD 297
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150
A ++RA V ++ G+ +A+ DLT+ ++++ D A G + DEA+ +
Sbjct: 62 AYYRRATVFLAX----GKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDF 117
Query: 151 ESALKIEPSWTDAQAALDRLV 171
+ LK PS + + A +L+
Sbjct: 118 KKVLKSNPSENEEKEAQSQLI 138
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153
AI +E ++ + DNV AL E Y +++ DEA YE+A
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETA 355
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160
+G D A+D T A+ ++ ++ LG +EA AY AL+++P +
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167
K +D+ A LG Y + ++AK AL+I+PS DA AAL
Sbjct: 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD--EAKTAYESALKIEP 158
S+ ++ G++ A+ EA++I A +G +K+M+D A Y A++I P
Sbjct: 51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT--LKEMQDVQGALQCYTRAIQINP 108
Query: 159 SWTDAQAAL 167
++ DA + L
Sbjct: 109 AFADAHSNL 117
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161
+ DSA +L AV+++ D+ + LG EA AY AL I P +
Sbjct: 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161
+ DSA +L AV+++ D+ + LG EA AY AL I P +
Sbjct: 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 85 EKEKGDALFKRAEVKMSM------------------NRRAG-----RVDSAIDDLTEAVK 121
EK KG+ FK+ + +M NR A A+DD ++
Sbjct: 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 122 IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167
+ +K C + +A+ AYE AL+++PS +A+ +
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150
A ++RA V ++ G+ +A+ DLT+ + ++ D A G + DEA+ +
Sbjct: 39 AYYRRATVFLAX----GKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDF 94
Query: 151 ESALKIEPSWTDAQAALDRLV 171
+ LK PS + + A +LV
Sbjct: 95 KKVLKSNPSEQEEKEAESQLV 115
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159
+G + AID A+ ++ ++ LG +EA AY AL+I+P
Sbjct: 226 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171
AID ++ +KI +NVKAL LG +EAK A + P+ D + + + V
Sbjct: 107 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166
Query: 172 S 172
+
Sbjct: 167 N 167
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163
A+ L AV++ +++ +A G C + M DEA + + + + +P DA
Sbjct: 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 63 FKTSALE-SFDLALSI------PAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDD 115
F T+ LE S+ + L++ PAVK L E +F+R V+ +N R ++
Sbjct: 290 FATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR-------LEK 342
Query: 116 LTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168
+ + + I + + A + E E+ + DE K A S + + T A+A L+
Sbjct: 343 VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL--TETQAEAILE 393
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 26.6 bits (57), Expect = 8.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102
A+ +K +AL+ + L D+ + ++ TLT K+K D +F + K+S+
Sbjct: 3149 GASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSV 3203
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102
A+ +K +AL+ + L D+ + ++ TLT K+K D +F + K+S+
Sbjct: 3271 GASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSV 3325
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 120 VKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162
+ +Q+ + KA LG YE+++ D+A Y ++++ P+ D
Sbjct: 58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD 100
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 120 VKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162
+ +Q+ + KA LG YE+++ D+A Y ++++ P+ D
Sbjct: 58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,524,693
Number of Sequences: 62578
Number of extensions: 108523
Number of successful extensions: 381
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 70
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)