Query 039398
Match_columns 172
No_of_seqs 286 out of 1040
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 09:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.9 2E-20 4.4E-25 116.3 14.2 122 34-169 13-134 (144)
2 KOG4626 O-linked N-acetylgluco 99.8 4.3E-20 9.3E-25 133.6 14.0 127 30-167 370-496 (966)
3 KOG4626 O-linked N-acetylgluco 99.8 8E-20 1.7E-24 132.2 13.8 152 2-170 314-465 (966)
4 COG3063 PilF Tfp pilus assembl 99.8 3.4E-19 7.4E-24 114.7 14.3 130 30-170 51-182 (250)
5 PRK10370 formate-dependent nit 99.8 7.2E-19 1.6E-23 114.8 15.3 131 28-168 53-185 (198)
6 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-18 4.8E-23 130.2 17.1 129 30-169 347-475 (615)
7 TIGR02552 LcrH_SycD type III s 99.8 4.8E-18 1E-22 104.9 14.1 123 35-168 4-126 (135)
8 KOG1155 Anaphase-promoting com 99.8 9.8E-18 2.1E-22 117.5 16.2 134 26-170 342-475 (559)
9 KOG0553 TPR repeat-containing 99.8 5.5E-18 1.2E-22 113.1 12.5 110 50-170 83-192 (304)
10 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-17 2.5E-22 126.3 15.8 122 30-162 381-502 (615)
11 PRK11189 lipoprotein NlpI; Pro 99.8 4.5E-17 9.7E-22 112.9 17.2 141 30-170 80-280 (296)
12 PRK12370 invasion protein regu 99.8 5E-17 1.1E-21 121.4 16.2 124 30-164 277-409 (553)
13 KOG1126 DNA-binding cell divis 99.8 1.3E-17 2.8E-22 121.0 11.5 137 23-170 464-600 (638)
14 TIGR02521 type_IV_pilW type IV 99.8 5.4E-16 1.2E-20 103.4 18.1 134 30-167 47-209 (234)
15 PRK15359 type III secretion sy 99.8 8.1E-17 1.8E-21 100.2 12.9 100 30-140 40-139 (144)
16 PRK11189 lipoprotein NlpI; Pro 99.7 2.3E-16 5.1E-21 109.3 16.3 123 29-162 41-167 (296)
17 KOG1126 DNA-binding cell divis 99.7 2.6E-17 5.6E-22 119.5 11.3 127 29-166 436-562 (638)
18 PRK12370 invasion protein regu 99.7 3E-16 6.6E-21 117.2 17.2 127 30-167 320-447 (553)
19 PRK09782 bacteriophage N4 rece 99.7 2.1E-16 4.7E-21 123.3 16.2 128 28-167 590-717 (987)
20 KOG1125 TPR repeat-containing 99.7 6.5E-17 1.4E-21 115.9 11.9 67 102-168 439-505 (579)
21 KOG0624 dsRNA-activated protei 99.7 1.9E-16 4.2E-21 107.8 13.5 70 102-171 316-385 (504)
22 KOG1173 Anaphase-promoting com 99.7 2.2E-16 4.9E-21 113.0 13.6 135 30-168 396-530 (611)
23 KOG0553 TPR repeat-containing 99.7 3.3E-16 7.1E-21 104.7 13.5 108 26-144 93-200 (304)
24 PRK11447 cellulose synthase su 99.7 8.6E-16 1.9E-20 123.2 17.3 136 30-169 285-427 (1157)
25 PLN02789 farnesyltranstransfer 99.7 2.2E-15 4.7E-20 104.8 16.2 148 4-168 33-183 (320)
26 PRK09782 bacteriophage N4 rece 99.7 1.9E-15 4E-20 118.2 17.2 128 30-169 558-685 (987)
27 PRK15179 Vi polysaccharide bio 99.7 2E-15 4.4E-20 114.1 16.8 123 30-163 102-224 (694)
28 PRK15174 Vi polysaccharide exp 99.7 2.7E-15 5.9E-20 114.0 16.9 124 30-164 228-355 (656)
29 PRK15363 pathogenicity island 99.7 2.5E-15 5.4E-20 92.6 13.2 111 39-160 25-136 (157)
30 TIGR02917 PEP_TPR_lipo putativ 99.7 4.3E-15 9.4E-20 116.0 17.8 135 30-168 38-200 (899)
31 PRK11447 cellulose synthase su 99.7 4.2E-15 9E-20 119.3 17.8 134 30-167 367-535 (1157)
32 KOG0547 Translocase of outer m 99.7 1.2E-15 2.5E-20 108.0 12.6 119 30-159 376-494 (606)
33 TIGR03302 OM_YfiO outer membra 99.7 8.2E-15 1.8E-19 98.6 15.7 135 30-168 49-210 (235)
34 COG3063 PilF Tfp pilus assembl 99.7 1.5E-14 3.2E-19 93.6 14.4 124 30-162 85-208 (250)
35 PRK15174 Vi polysaccharide exp 99.7 5.8E-15 1.3E-19 112.2 14.5 120 32-162 268-387 (656)
36 PLN03088 SGT1, suppressor of 99.7 7.9E-15 1.7E-19 103.9 13.8 109 51-170 5-113 (356)
37 KOG1155 Anaphase-promoting com 99.6 2.5E-14 5.4E-19 100.8 15.2 115 30-155 380-494 (559)
38 KOG1125 TPR repeat-containing 99.6 2.7E-15 5.9E-20 107.7 10.4 123 26-159 406-530 (579)
39 PRK15179 Vi polysaccharide bio 99.6 3.2E-14 7E-19 107.7 16.6 129 30-169 68-196 (694)
40 TIGR02795 tol_pal_ybgF tol-pal 99.6 2.7E-14 5.8E-19 86.0 12.7 115 48-170 2-119 (119)
41 PLN02789 farnesyltranstransfer 99.6 5.2E-14 1.1E-18 98.0 15.3 129 30-169 88-225 (320)
42 KOG1174 Anaphase-promoting com 99.6 7.8E-14 1.7E-18 97.3 15.1 153 7-171 304-515 (564)
43 TIGR02917 PEP_TPR_lipo putativ 99.6 5.5E-14 1.2E-18 109.9 16.3 128 30-169 752-879 (899)
44 PLN03088 SGT1, suppressor of 99.6 3.6E-14 7.9E-19 100.6 13.5 101 30-141 18-118 (356)
45 PRK11788 tetratricopeptide rep 99.6 1.2E-13 2.6E-18 99.4 16.4 128 29-167 195-322 (389)
46 KOG0547 Translocase of outer m 99.6 2.4E-14 5.2E-19 101.4 12.2 129 30-169 342-470 (606)
47 PRK11788 tetratricopeptide rep 99.6 1.5E-13 3.2E-18 98.9 16.6 126 30-161 123-248 (389)
48 COG4235 Cytochrome c biogenesi 99.6 1.1E-13 2.4E-18 93.0 14.4 130 30-167 138-267 (287)
49 KOG0548 Molecular co-chaperone 99.6 1.4E-13 2.9E-18 98.4 14.7 129 30-169 340-468 (539)
50 PF13429 TPR_15: Tetratricopep 99.6 2.6E-14 5.7E-19 98.5 10.1 130 29-169 125-256 (280)
51 PRK10049 pgaA outer membrane p 99.6 2.3E-13 5E-18 105.3 16.1 127 30-168 31-157 (765)
52 KOG2076 RNA polymerase III tra 99.6 4.1E-13 9E-18 100.9 15.3 132 5-158 141-272 (895)
53 KOG3060 Uncharacterized conser 99.5 9.7E-13 2.1E-17 86.4 14.9 127 30-167 102-231 (289)
54 PRK02603 photosystem I assembl 99.5 4.8E-13 1E-17 85.9 13.5 110 44-161 31-154 (172)
55 TIGR03302 OM_YfiO outer membra 99.5 4.8E-13 1E-17 90.0 13.8 126 30-159 86-235 (235)
56 CHL00033 ycf3 photosystem I as 99.5 1.7E-12 3.7E-17 83.0 14.8 125 30-162 15-155 (168)
57 PF13429 TPR_15: Tetratricopep 99.5 4.1E-14 8.9E-19 97.6 7.7 115 30-155 162-276 (280)
58 KOG0543 FKBP-type peptidyl-pro 99.5 4.3E-13 9.3E-18 93.4 11.6 118 50-171 210-335 (397)
59 PRK10049 pgaA outer membrane p 99.5 1.9E-12 4.1E-17 100.3 16.4 127 29-166 325-466 (765)
60 PF13414 TPR_11: TPR repeat; P 99.5 1.2E-13 2.6E-18 75.3 7.0 67 88-158 2-69 (69)
61 COG4783 Putative Zn-dependent 99.5 3.7E-12 7.9E-17 90.5 16.1 129 30-169 322-450 (484)
62 COG5010 TadD Flp pilus assembl 99.5 3.3E-12 7.2E-17 84.2 14.4 128 32-170 84-211 (257)
63 KOG2002 TPR-containing nuclear 99.5 7.3E-13 1.6E-17 100.4 12.9 135 24-169 622-758 (1018)
64 cd00189 TPR Tetratricopeptide 99.5 1.5E-12 3.2E-17 74.7 11.7 99 50-159 2-100 (100)
65 KOG2002 TPR-containing nuclear 99.5 1.9E-12 4E-17 98.3 14.9 135 28-170 250-385 (1018)
66 PRK10153 DNA-binding transcrip 99.5 2.6E-12 5.7E-17 94.8 15.5 121 30-162 358-488 (517)
67 KOG0550 Molecular chaperone (D 99.5 5.4E-13 1.2E-17 93.0 10.7 123 30-159 219-353 (486)
68 PRK10803 tol-pal system protei 99.5 3E-12 6.5E-17 86.9 13.9 116 48-171 142-261 (263)
69 TIGR02552 LcrH_SycD type III s 99.5 2.1E-12 4.6E-17 79.6 12.1 90 30-130 33-122 (135)
70 PRK14574 hmsH outer membrane p 99.5 4.8E-12 1E-16 97.7 16.4 123 30-163 50-172 (822)
71 COG2956 Predicted N-acetylgluc 99.5 3.1E-12 6.7E-17 86.8 13.4 129 30-161 51-248 (389)
72 KOG4234 TPR repeat-containing 99.5 2.8E-12 6.1E-17 81.6 12.0 116 49-170 96-211 (271)
73 TIGR02521 type_IV_pilW type IV 99.5 9.8E-12 2.1E-16 82.8 15.4 118 30-158 115-234 (234)
74 KOG0548 Molecular co-chaperone 99.5 3.9E-12 8.4E-17 91.2 13.8 113 30-153 374-486 (539)
75 PF09976 TPR_21: Tetratricopep 99.5 9.2E-12 2E-16 77.7 13.9 116 30-154 27-145 (145)
76 PRK15363 pathogenicity island 99.5 3.6E-12 7.9E-17 78.7 11.7 86 30-126 51-136 (157)
77 PF13432 TPR_16: Tetratricopep 99.5 4.3E-13 9.3E-18 72.1 6.7 58 104-161 8-65 (65)
78 KOG4162 Predicted calmodulin-b 99.5 2.4E-11 5.3E-16 90.4 17.7 168 3-170 433-763 (799)
79 KOG3060 Uncharacterized conser 99.4 2.5E-11 5.3E-16 79.9 15.5 130 30-170 68-197 (289)
80 PF13525 YfiO: Outer membrane 99.4 1.7E-11 3.7E-16 80.6 14.7 152 4-170 6-184 (203)
81 KOG1173 Anaphase-promoting com 99.4 1E-11 2.2E-16 89.6 14.2 139 30-168 328-496 (611)
82 PF14559 TPR_19: Tetratricopep 99.4 1.3E-12 2.8E-17 70.9 7.4 66 105-170 3-68 (68)
83 PRK11906 transcriptional regul 99.4 3E-11 6.4E-16 86.2 16.1 123 30-163 274-408 (458)
84 KOG4162 Predicted calmodulin-b 99.4 5.5E-12 1.2E-16 93.7 12.6 122 30-162 666-789 (799)
85 KOG1129 TPR repeat-containing 99.4 1.2E-12 2.7E-17 89.1 8.2 129 30-166 340-468 (478)
86 PRK10370 formate-dependent nit 99.4 8.2E-12 1.8E-16 81.7 11.1 97 61-168 52-151 (198)
87 KOG0550 Molecular chaperone (D 99.4 5.9E-12 1.3E-16 87.9 10.6 137 30-166 65-242 (486)
88 PRK10866 outer membrane biogen 99.4 5.3E-11 1.2E-15 80.2 14.9 136 30-169 48-217 (243)
89 PF13414 TPR_11: TPR repeat; P 99.4 2.3E-12 5E-17 70.1 6.9 67 47-124 2-69 (69)
90 KOG0543 FKBP-type peptidyl-pro 99.4 3.9E-11 8.5E-16 83.8 13.9 118 30-158 224-357 (397)
91 KOG0495 HAT repeat protein [RN 99.4 4.8E-11 1E-15 87.9 14.9 130 30-171 600-729 (913)
92 KOG1129 TPR repeat-containing 99.4 2.1E-12 4.6E-17 88.0 7.4 137 30-170 272-438 (478)
93 PF12688 TPR_5: Tetratrico pep 99.4 4.8E-11 1E-15 71.4 12.3 100 48-155 1-103 (120)
94 PRK15331 chaperone protein Sic 99.4 2.5E-11 5.4E-16 75.4 11.3 114 39-164 28-141 (165)
95 KOG2003 TPR repeat-containing 99.4 3.1E-11 6.8E-16 85.8 13.0 122 30-162 506-627 (840)
96 COG5010 TadD Flp pilus assembl 99.4 5.3E-11 1.2E-15 78.6 13.0 113 30-153 116-228 (257)
97 KOG1840 Kinesin light chain [C 99.4 1.8E-11 3.8E-16 89.5 11.6 124 30-157 257-397 (508)
98 KOG4648 Uncharacterized conser 99.4 7.8E-12 1.7E-16 85.8 9.0 111 51-172 100-210 (536)
99 KOG2076 RNA polymerase III tra 99.4 1.5E-10 3.2E-15 87.6 16.5 68 103-170 424-492 (895)
100 TIGR02795 tol_pal_ybgF tol-pal 99.3 4.2E-11 9.2E-16 72.0 11.3 106 6-130 5-113 (119)
101 KOG1156 N-terminal acetyltrans 99.3 5.5E-11 1.2E-15 87.1 13.2 128 30-168 23-150 (700)
102 cd05804 StaR_like StaR_like; a 99.3 6.1E-11 1.3E-15 84.5 13.3 121 30-159 59-180 (355)
103 PF13371 TPR_9: Tetratricopept 99.3 1.9E-11 4.1E-16 67.2 8.1 67 104-170 6-72 (73)
104 PF12895 Apc3: Anaphase-promot 99.3 5.9E-12 1.3E-16 71.2 6.1 84 60-153 1-84 (84)
105 COG1729 Uncharacterized protei 99.3 2.1E-10 4.5E-15 76.6 13.5 113 50-170 143-258 (262)
106 CHL00033 ycf3 photosystem I as 99.3 1.5E-10 3.3E-15 74.0 12.6 94 30-127 51-154 (168)
107 PF13432 TPR_16: Tetratricopep 99.3 4.6E-11 1E-15 64.1 8.1 65 52-127 1-65 (65)
108 COG4783 Putative Zn-dependent 99.3 1.8E-10 3.9E-15 82.1 12.9 115 45-170 303-417 (484)
109 KOG0624 dsRNA-activated protei 99.3 6.9E-11 1.5E-15 81.2 10.2 110 43-163 33-142 (504)
110 PRK10803 tol-pal system protei 99.3 2.3E-10 4.9E-15 77.8 12.5 92 30-129 159-253 (263)
111 PF12895 Apc3: Anaphase-promot 99.3 1.7E-11 3.7E-16 69.3 6.0 79 29-119 4-84 (84)
112 PF13512 TPR_18: Tetratricopep 99.3 4.7E-10 1E-14 68.3 12.5 115 47-169 9-141 (142)
113 PRK14574 hmsH outer membrane p 99.3 3.6E-10 7.8E-15 87.6 14.7 127 30-168 84-210 (822)
114 KOG0495 HAT repeat protein [RN 99.3 8.5E-10 1.8E-14 81.5 15.7 149 7-166 634-792 (913)
115 cd00189 TPR Tetratricopeptide 99.3 3E-10 6.4E-15 64.9 11.1 85 30-125 16-100 (100)
116 PRK10747 putative protoheme IX 99.3 1.3E-09 2.9E-14 78.8 16.5 134 29-162 168-363 (398)
117 TIGR00540 hemY_coli hemY prote 99.2 1.7E-09 3.7E-14 78.6 16.5 123 30-162 100-222 (409)
118 KOG1127 TPR repeat-containing 99.2 3.9E-10 8.5E-15 86.4 13.3 138 30-167 474-636 (1238)
119 KOG3785 Uncharacterized conser 99.2 1.2E-09 2.7E-14 75.6 14.5 139 29-168 37-226 (557)
120 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 5.7E-10 1.2E-14 79.6 13.1 110 30-153 185-294 (395)
121 PRK02603 photosystem I assembl 99.2 8E-10 1.7E-14 71.0 12.2 97 30-126 51-153 (172)
122 KOG2003 TPR repeat-containing 99.2 2.8E-09 6.1E-14 76.1 15.8 131 30-171 574-704 (840)
123 KOG1128 Uncharacterized conser 99.2 1.4E-10 3.1E-15 86.1 9.3 121 27-158 498-618 (777)
124 cd05804 StaR_like StaR_like; a 99.2 9.1E-10 2E-14 78.5 12.9 115 33-158 99-217 (355)
125 PF12569 NARP1: NMDA receptor- 99.2 3.3E-09 7.1E-14 78.4 15.6 60 103-162 204-263 (517)
126 PRK10747 putative protoheme IX 99.1 9.4E-09 2E-13 74.5 16.6 122 30-162 100-222 (398)
127 KOG1840 Kinesin light chain [C 99.1 9.1E-10 2E-14 80.7 10.7 124 30-157 215-355 (508)
128 PF06552 TOM20_plant: Plant sp 99.1 8.3E-10 1.8E-14 69.4 8.7 106 29-169 6-122 (186)
129 KOG1128 Uncharacterized conser 99.1 6E-10 1.3E-14 82.8 9.3 108 48-166 485-592 (777)
130 PRK14720 transcript cleavage f 99.1 3.1E-09 6.7E-14 82.4 13.5 120 30-156 47-178 (906)
131 COG2956 Predicted N-acetylgluc 99.1 1.5E-08 3.4E-13 69.2 15.1 124 30-164 196-319 (389)
132 PF13525 YfiO: Outer membrane 99.1 3E-09 6.5E-14 70.0 11.6 113 47-167 4-130 (203)
133 KOG1156 N-terminal acetyltrans 99.1 1.1E-08 2.5E-13 75.4 14.9 140 30-169 91-261 (700)
134 TIGR00540 hemY_coli hemY prote 99.1 9.6E-09 2.1E-13 74.7 14.7 123 33-164 244-374 (409)
135 KOG1174 Anaphase-promoting com 99.1 6.2E-09 1.3E-13 73.4 13.0 139 30-168 214-375 (564)
136 PRK10866 outer membrane biogen 99.1 1.5E-08 3.2E-13 68.5 14.2 114 46-167 30-164 (243)
137 PF13424 TPR_12: Tetratricopep 99.1 3.8E-10 8.3E-15 62.8 5.2 74 45-122 2-75 (78)
138 PRK14720 transcript cleavage f 99.0 7.9E-09 1.7E-13 80.2 11.9 128 41-169 24-158 (906)
139 PF04733 Coatomer_E: Coatomer 99.0 6.2E-09 1.3E-13 72.0 10.3 113 46-167 129-241 (290)
140 PF13424 TPR_12: Tetratricopep 99.0 2E-09 4.3E-14 59.9 6.0 67 86-156 2-75 (78)
141 PF14559 TPR_19: Tetratricopep 99.0 2.6E-09 5.6E-14 57.8 6.3 50 30-79 7-56 (68)
142 PRK11906 transcriptional regul 99.0 1.5E-07 3.2E-12 67.7 16.5 122 26-158 316-438 (458)
143 PRK15331 chaperone protein Sic 99.0 1.9E-08 4.2E-13 62.7 10.7 85 30-126 53-137 (165)
144 KOG0545 Aryl-hydrocarbon recep 99.0 2.3E-08 5.1E-13 66.0 11.5 110 48-162 178-299 (329)
145 COG1729 Uncharacterized protei 99.0 3.1E-08 6.8E-13 66.4 12.2 96 30-133 157-255 (262)
146 KOG4234 TPR repeat-containing 99.0 2.9E-08 6.3E-13 63.7 11.4 96 29-135 110-210 (271)
147 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2E-08 4.3E-13 72.0 11.8 70 43-123 70-142 (453)
148 PF04733 Coatomer_E: Coatomer 99.0 3.8E-08 8.2E-13 68.1 12.9 125 30-165 147-274 (290)
149 PF13371 TPR_9: Tetratricopept 99.0 7.6E-09 1.6E-13 56.7 7.7 70 55-135 2-71 (73)
150 PF13428 TPR_14: Tetratricopep 99.0 2.7E-09 5.9E-14 52.5 5.2 44 127-170 1-44 (44)
151 KOG4340 Uncharacterized conser 99.0 5.1E-08 1.1E-12 66.4 12.6 125 30-154 26-205 (459)
152 KOG4648 Uncharacterized conser 99.0 7.2E-09 1.6E-13 71.6 8.6 95 30-135 113-207 (536)
153 PF14938 SNAP: Soluble NSF att 98.9 3E-08 6.4E-13 68.6 11.6 126 30-160 90-229 (282)
154 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 7.2E-09 1.6E-13 74.2 8.6 69 84-156 70-141 (453)
155 PF13512 TPR_18: Tetratricopep 98.9 6.8E-08 1.5E-12 59.0 11.4 109 6-129 13-135 (142)
156 PF12688 TPR_5: Tetratrico pep 98.9 1E-07 2.2E-12 57.2 10.8 98 6-122 4-104 (120)
157 COG4105 ComL DNA uptake lipopr 98.9 3E-07 6.6E-12 61.3 14.0 137 30-170 50-210 (254)
158 COG4785 NlpI Lipoprotein NlpI, 98.9 1E-08 2.3E-13 66.5 6.7 111 47-168 64-176 (297)
159 KOG4555 TPR repeat-containing 98.9 2.3E-07 5.1E-12 55.6 11.6 99 51-160 46-148 (175)
160 PF06552 TOM20_plant: Plant sp 98.9 4.3E-08 9.4E-13 61.8 8.9 30 107-136 94-123 (186)
161 PF12569 NARP1: NMDA receptor- 98.8 4.5E-07 9.8E-12 67.4 15.3 117 30-157 210-335 (517)
162 KOG1127 TPR repeat-containing 98.8 9.7E-08 2.1E-12 73.8 12.0 128 30-168 508-671 (1238)
163 KOG4642 Chaperone-dependent E3 98.8 1.3E-07 2.8E-12 62.2 10.7 83 29-122 25-107 (284)
164 PF13431 TPR_17: Tetratricopep 98.8 1.1E-08 2.4E-13 47.1 3.2 34 115-148 1-34 (34)
165 PF14938 SNAP: Soluble NSF att 98.8 2.7E-07 5.8E-12 63.9 11.4 104 48-157 75-185 (282)
166 KOG4642 Chaperone-dependent E3 98.8 5.2E-08 1.1E-12 64.0 7.3 95 51-156 13-107 (284)
167 PF09976 TPR_21: Tetratricopep 98.8 1.9E-07 4.1E-12 58.3 9.5 79 30-120 64-145 (145)
168 COG4785 NlpI Lipoprotein NlpI, 98.7 5.9E-07 1.3E-11 58.6 11.3 89 29-128 80-168 (297)
169 COG4235 Cytochrome c biogenesi 98.7 4.3E-07 9.4E-12 61.8 11.1 94 64-168 138-234 (287)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6E-07 1.3E-11 64.5 12.5 103 54-170 175-277 (395)
171 PF13431 TPR_17: Tetratricopep 98.7 1.2E-08 2.6E-13 47.0 2.5 34 36-69 1-34 (34)
172 COG4700 Uncharacterized protei 98.7 2.1E-06 4.5E-11 54.8 13.1 120 30-160 72-193 (251)
173 PF00515 TPR_1: Tetratricopept 98.7 4.3E-08 9.3E-13 45.3 4.1 34 127-160 1-34 (34)
174 COG4700 Uncharacterized protei 98.7 5.1E-06 1.1E-10 53.1 14.4 115 30-154 105-220 (251)
175 KOG4555 TPR repeat-containing 98.7 1.9E-06 4.1E-11 51.8 11.8 89 30-125 59-147 (175)
176 KOG2376 Signal recognition par 98.7 1.2E-06 2.6E-11 64.5 13.2 119 30-163 28-146 (652)
177 KOG0376 Serine-threonine phosp 98.7 4.3E-08 9.4E-13 70.2 5.5 109 51-170 7-115 (476)
178 PRK10153 DNA-binding transcrip 98.7 8.5E-07 1.8E-11 66.2 12.2 87 30-128 400-488 (517)
179 KOG0376 Serine-threonine phosp 98.7 6.1E-08 1.3E-12 69.5 5.7 99 30-139 20-118 (476)
180 PF07719 TPR_2: Tetratricopept 98.7 8.3E-08 1.8E-12 44.2 4.4 34 127-160 1-34 (34)
181 KOG2376 Signal recognition par 98.6 4.6E-06 1E-10 61.5 14.4 126 30-162 95-259 (652)
182 KOG2796 Uncharacterized conser 98.6 2.4E-06 5.2E-11 57.4 11.4 127 30-161 193-320 (366)
183 KOG3081 Vesicle coat complex C 98.6 7.6E-06 1.6E-10 55.0 13.2 110 49-167 138-247 (299)
184 PF13428 TPR_14: Tetratricopep 98.6 2.9E-07 6.3E-12 45.1 4.9 42 90-135 2-43 (44)
185 COG3071 HemY Uncharacterized e 98.5 2.7E-05 5.8E-10 55.0 15.5 133 30-162 169-363 (400)
186 KOG0551 Hsp90 co-chaperone CNS 98.5 2.3E-06 5E-11 59.1 10.0 109 47-162 80-188 (390)
187 COG4105 ComL DNA uptake lipopr 98.5 1.4E-05 3E-10 53.6 12.6 112 47-166 33-155 (254)
188 COG0457 NrfG FOG: TPR repeat [ 98.5 9.3E-05 2E-09 48.7 17.6 123 30-160 111-235 (291)
189 KOG1941 Acetylcholine receptor 98.5 3.4E-06 7.4E-11 59.1 10.0 126 30-157 138-276 (518)
190 KOG1130 Predicted G-alpha GTPa 98.4 3E-07 6.6E-12 65.2 4.6 128 24-156 165-304 (639)
191 PF10300 DUF3808: Protein of u 98.4 1.9E-05 4.1E-10 58.5 13.2 122 29-157 248-377 (468)
192 PF00515 TPR_1: Tetratricopept 98.4 6.4E-07 1.4E-11 41.2 3.3 32 48-79 1-32 (34)
193 KOG2610 Uncharacterized conser 98.4 1.4E-05 3.1E-10 55.6 10.8 116 30-153 119-235 (491)
194 KOG1586 Protein required for f 98.4 2.3E-05 5E-10 51.8 11.2 128 30-162 89-230 (288)
195 KOG2053 Mitochondrial inherita 98.3 5E-05 1.1E-09 58.8 14.4 123 28-162 23-145 (932)
196 KOG1130 Predicted G-alpha GTPa 98.3 2.6E-06 5.6E-11 60.7 7.1 123 29-156 210-344 (639)
197 PF13181 TPR_8: Tetratricopept 98.3 1.1E-06 2.5E-11 40.3 3.6 33 128-160 2-34 (34)
198 PF07719 TPR_2: Tetratricopept 98.3 1.1E-06 2.4E-11 40.3 3.6 32 48-79 1-32 (34)
199 COG3118 Thioredoxin domain-con 98.3 0.00011 2.4E-09 50.3 13.8 118 30-159 150-268 (304)
200 PLN03081 pentatricopeptide (PP 98.2 3.5E-05 7.7E-10 60.1 12.3 52 104-155 505-556 (697)
201 COG2976 Uncharacterized protei 98.2 0.0003 6.5E-09 45.4 13.6 103 50-161 91-193 (207)
202 PLN03218 maturation of RBCL 1; 98.2 0.00026 5.7E-09 57.4 16.3 47 30-76 595-642 (1060)
203 KOG1308 Hsp70-interacting prot 98.2 9.6E-07 2.1E-11 61.1 2.3 96 53-159 119-214 (377)
204 PF03704 BTAD: Bacterial trans 98.2 0.00039 8.4E-09 43.3 14.5 103 52-154 10-123 (146)
205 KOG0545 Aryl-hydrocarbon recep 98.2 7.1E-05 1.5E-09 50.0 10.7 72 48-130 230-301 (329)
206 PLN03077 Protein ECB2; Provisi 98.2 0.00029 6.4E-09 56.3 15.8 107 30-152 540-650 (857)
207 KOG2471 TPR repeat-containing 98.2 9.7E-05 2.1E-09 54.0 11.7 136 30-169 222-377 (696)
208 PLN03218 maturation of RBCL 1; 98.1 0.0004 8.6E-09 56.4 16.3 47 30-76 488-535 (1060)
209 PLN03081 pentatricopeptide (PP 98.1 0.0001 2.2E-09 57.5 12.8 132 30-167 376-534 (697)
210 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.4E-09 50.3 12.2 128 30-168 17-148 (280)
211 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 1.3E-05 2.9E-10 40.6 5.1 43 128-170 2-44 (53)
212 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00075 1.6E-08 44.3 15.9 127 30-166 75-207 (291)
213 KOG1915 Cell cycle control pro 98.1 0.00047 1E-08 50.4 14.5 120 28-159 87-206 (677)
214 KOG1915 Cell cycle control pro 98.1 0.00033 7.1E-09 51.2 13.5 87 36-125 310-398 (677)
215 KOG1308 Hsp70-interacting prot 98.1 4.5E-06 9.8E-11 57.9 4.1 84 30-124 130-213 (377)
216 PRK10941 hypothetical protein; 98.1 9.3E-05 2E-09 50.8 10.3 70 101-170 189-258 (269)
217 PLN03077 Protein ECB2; Provisi 98.1 0.0001 2.2E-09 58.9 12.1 112 30-154 605-718 (857)
218 KOG1070 rRNA processing protei 98.1 0.00018 4E-09 58.4 13.0 127 33-159 1443-1596(1710)
219 PF05843 Suf: Suppressor of fo 98.1 0.0002 4.4E-09 49.7 12.0 102 50-161 3-104 (280)
220 COG3071 HemY Uncharacterized e 98.1 0.0016 3.5E-08 46.4 16.3 118 30-157 100-217 (400)
221 KOG4507 Uncharacterized conser 98.1 2.5E-05 5.3E-10 58.1 7.6 106 55-170 614-719 (886)
222 KOG0551 Hsp90 co-chaperone CNS 98.1 8.2E-05 1.8E-09 51.7 9.4 93 9-123 87-183 (390)
223 PF04184 ST7: ST7 protein; In 98.0 0.00032 7E-09 51.4 12.7 119 30-154 184-322 (539)
224 KOG1586 Protein required for f 98.0 0.00071 1.5E-08 45.0 13.0 110 49-163 75-190 (288)
225 KOG3785 Uncharacterized conser 98.0 0.00029 6.2E-09 49.7 11.8 130 30-162 167-317 (557)
226 PF13174 TPR_6: Tetratricopept 98.0 1.2E-05 2.6E-10 36.5 3.7 33 128-160 1-33 (33)
227 PF04781 DUF627: Protein of un 98.0 0.00012 2.6E-09 42.8 8.3 104 54-157 2-108 (111)
228 PRK04841 transcriptional regul 97.9 0.00031 6.8E-09 56.4 12.4 123 30-157 468-603 (903)
229 PF13281 DUF4071: Domain of un 97.9 0.0027 5.9E-08 45.6 15.1 135 30-170 157-348 (374)
230 KOG1310 WD40 repeat protein [G 97.9 7.7E-05 1.7E-09 54.9 7.4 105 51-163 377-481 (758)
231 PF13176 TPR_7: Tetratricopept 97.9 2.9E-05 6.2E-10 36.1 3.5 28 129-156 1-28 (36)
232 PF13181 TPR_8: Tetratricopept 97.9 1.8E-05 3.8E-10 36.2 2.6 31 49-79 2-32 (34)
233 PF14561 TPR_20: Tetratricopep 97.8 0.00028 6E-09 40.2 7.7 56 112-167 7-64 (90)
234 KOG3824 Huntingtin interacting 97.8 9E-05 2E-09 51.2 6.1 64 104-167 127-190 (472)
235 PRK04841 transcriptional regul 97.8 0.00067 1.4E-08 54.6 12.1 124 30-157 507-642 (903)
236 smart00028 TPR Tetratricopepti 97.8 6.5E-05 1.4E-09 33.3 3.9 33 128-160 2-34 (34)
237 KOG1070 rRNA processing protei 97.7 0.0018 4E-08 53.0 13.3 119 30-157 1546-1664(1710)
238 PF02259 FAT: FAT domain; Int 97.7 0.0061 1.3E-07 43.5 15.2 130 30-159 162-341 (352)
239 KOG3081 Vesicle coat complex C 97.7 0.0058 1.2E-07 41.6 15.1 121 30-163 153-278 (299)
240 COG4976 Predicted methyltransf 97.7 0.0001 2.2E-09 48.7 5.2 57 106-162 8-64 (287)
241 KOG2471 TPR repeat-containing 97.7 0.00019 4.1E-09 52.6 6.7 87 50-140 285-382 (696)
242 KOG2610 Uncharacterized conser 97.7 0.00067 1.4E-08 47.6 9.0 109 50-169 105-217 (491)
243 PF13176 TPR_7: Tetratricopept 97.6 0.00015 3.3E-09 33.7 3.7 28 50-77 1-28 (36)
244 PF13174 TPR_6: Tetratricopept 97.6 8.6E-05 1.9E-09 33.5 2.8 31 49-79 1-31 (33)
245 KOG1941 Acetylcholine receptor 97.6 0.0015 3.2E-08 46.4 9.5 123 30-157 99-236 (518)
246 KOG3364 Membrane protein invol 97.5 0.00068 1.5E-08 41.1 6.6 64 107-170 49-114 (149)
247 PF04184 ST7: ST7 protein; In 97.5 0.0075 1.6E-07 44.6 13.0 108 49-165 260-384 (539)
248 PF10602 RPN7: 26S proteasome 97.5 0.0098 2.1E-07 38.4 11.7 104 47-158 35-144 (177)
249 PF14561 TPR_20: Tetratricopep 97.4 0.0021 4.6E-08 36.6 7.3 47 33-79 7-53 (90)
250 smart00028 TPR Tetratricopepti 97.4 0.00032 7E-09 30.9 3.4 31 49-79 2-32 (34)
251 KOG2396 HAT (Half-A-TPR) repea 97.4 0.0043 9.4E-08 45.8 10.3 66 104-169 116-182 (568)
252 PF09986 DUF2225: Uncharacteri 97.4 0.0052 1.1E-07 40.9 9.8 97 61-161 90-199 (214)
253 COG2912 Uncharacterized conser 97.4 0.0048 1E-07 42.1 9.6 79 88-166 176-254 (269)
254 KOG2053 Mitochondrial inherita 97.4 0.0031 6.7E-08 49.4 9.7 90 59-159 20-109 (932)
255 KOG2396 HAT (Half-A-TPR) repea 97.3 0.022 4.7E-07 42.3 13.3 99 25-133 82-180 (568)
256 KOG4507 Uncharacterized conser 97.3 0.0036 7.8E-08 47.2 9.1 95 30-135 623-718 (886)
257 PF09986 DUF2225: Uncharacteri 97.3 0.018 3.9E-07 38.4 11.6 103 30-137 93-210 (214)
258 KOG1585 Protein required for f 97.3 0.025 5.5E-07 38.2 12.1 105 50-159 33-142 (308)
259 PF08424 NRDE-2: NRDE-2, neces 97.3 0.012 2.6E-07 41.9 11.4 127 23-157 40-184 (321)
260 KOG0530 Protein farnesyltransf 97.3 0.029 6.3E-07 38.3 12.9 121 30-161 59-181 (318)
261 PF03704 BTAD: Bacterial trans 97.2 0.0049 1.1E-07 38.3 8.2 46 30-75 78-123 (146)
262 COG0790 FOG: TPR repeat, SEL1 97.2 0.035 7.5E-07 38.8 13.1 126 30-167 93-229 (292)
263 KOG2796 Uncharacterized conser 97.1 0.0082 1.8E-07 41.0 8.8 106 49-164 178-289 (366)
264 COG3898 Uncharacterized membra 97.1 0.057 1.2E-06 39.1 14.1 127 30-160 170-296 (531)
265 PF10300 DUF3808: Protein of u 97.1 0.011 2.4E-07 44.2 10.2 83 30-122 283-376 (468)
266 PF02259 FAT: FAT domain; Int 97.1 0.056 1.2E-06 38.7 14.2 120 44-170 142-301 (352)
267 KOG4340 Uncharacterized conser 97.0 0.012 2.6E-07 41.0 9.0 86 58-154 20-105 (459)
268 COG2976 Uncharacterized protei 97.0 0.042 9.1E-07 35.8 11.0 87 29-127 104-193 (207)
269 KOG1550 Extracellular protein 97.0 0.051 1.1E-06 41.7 13.1 116 30-157 265-394 (552)
270 KOG1585 Protein required for f 97.0 0.056 1.2E-06 36.7 12.3 118 30-153 47-176 (308)
271 COG3914 Spy Predicted O-linked 97.0 0.043 9.3E-07 41.5 11.9 125 32-167 49-182 (620)
272 PF13374 TPR_10: Tetratricopep 96.9 0.0026 5.6E-08 30.2 4.0 30 127-156 2-31 (42)
273 PF08631 SPO22: Meiosis protei 96.9 0.072 1.6E-06 37.1 12.8 128 30-158 9-152 (278)
274 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.011 2.3E-07 30.0 6.2 33 104-136 12-44 (53)
275 KOG3824 Huntingtin interacting 96.9 0.016 3.5E-07 40.5 8.7 51 30-80 132-182 (472)
276 KOG2047 mRNA splicing factor [ 96.9 0.066 1.4E-06 41.2 12.4 132 30-165 403-551 (835)
277 COG4976 Predicted methyltransf 96.9 0.003 6.5E-08 42.1 4.9 60 57-127 4-63 (287)
278 PF04781 DUF627: Protein of un 96.9 0.017 3.6E-07 34.0 7.5 73 6-78 36-108 (111)
279 KOG1310 WD40 repeat protein [G 96.8 0.021 4.6E-07 42.8 9.5 87 30-127 390-479 (758)
280 KOG3617 WD40 and TPR repeat-co 96.8 0.04 8.6E-07 43.7 10.9 105 48-156 858-996 (1416)
281 KOG2047 mRNA splicing factor [ 96.8 0.07 1.5E-06 41.1 11.9 123 30-158 493-617 (835)
282 KOG0529 Protein geranylgeranyl 96.8 0.12 2.6E-06 37.6 13.5 136 23-165 84-233 (421)
283 PF07720 TPR_3: Tetratricopept 96.8 0.0066 1.4E-07 28.1 4.3 33 128-160 2-36 (36)
284 PRK10941 hypothetical protein; 96.7 0.041 8.9E-07 38.1 9.9 77 50-137 183-259 (269)
285 PF12968 DUF3856: Domain of Un 96.7 0.05 1.1E-06 32.5 9.8 85 30-121 25-128 (144)
286 PF10373 EST1_DNA_bind: Est1 D 96.7 0.011 2.4E-07 40.8 7.3 59 112-170 1-59 (278)
287 PRK15180 Vi polysaccharide bio 96.7 0.019 4.1E-07 42.6 8.4 123 30-163 305-427 (831)
288 COG5191 Uncharacterized conser 96.7 0.006 1.3E-07 42.5 5.4 79 87-169 105-184 (435)
289 KOG0530 Protein farnesyltransf 96.7 0.028 6.1E-07 38.4 8.3 130 30-170 94-230 (318)
290 PF15015 NYD-SP12_N: Spermatog 96.7 0.037 8.1E-07 40.3 9.3 100 55-154 183-289 (569)
291 PF13374 TPR_10: Tetratricopep 96.6 0.0062 1.3E-07 28.8 4.1 30 48-77 2-31 (42)
292 PF08424 NRDE-2: NRDE-2, neces 96.6 0.086 1.9E-06 37.6 11.1 94 69-169 6-107 (321)
293 KOG2300 Uncharacterized conser 96.6 0.15 3.2E-06 38.1 11.9 126 28-157 381-515 (629)
294 PF09613 HrpB1_HrpK: Bacterial 96.6 0.091 2E-06 33.2 13.0 85 49-144 11-95 (160)
295 KOG3617 WD40 and TPR repeat-co 96.5 0.17 3.7E-06 40.4 12.8 64 87-154 856-939 (1416)
296 PF13281 DUF4071: Domain of un 96.4 0.22 4.7E-06 36.2 15.1 111 47-161 140-260 (374)
297 PF10579 Rapsyn_N: Rapsyn N-te 96.4 0.026 5.6E-07 31.0 5.8 64 2-76 5-71 (80)
298 PF04910 Tcf25: Transcriptiona 96.3 0.25 5.5E-06 35.8 13.1 132 19-160 52-226 (360)
299 PF04910 Tcf25: Transcriptiona 96.3 0.26 5.6E-06 35.8 13.7 116 39-155 31-167 (360)
300 PF12862 Apc5: Anaphase-promot 96.3 0.026 5.6E-07 32.4 5.8 54 105-158 10-72 (94)
301 COG3898 Uncharacterized membra 96.3 0.28 6E-06 35.8 13.1 116 30-161 245-363 (531)
302 PF12862 Apc5: Anaphase-promot 96.3 0.045 9.7E-07 31.4 6.7 64 57-124 7-72 (94)
303 COG5191 Uncharacterized conser 96.3 0.029 6.3E-07 39.3 6.7 91 33-133 92-182 (435)
304 PF07721 TPR_4: Tetratricopept 96.2 0.01 2.3E-07 25.1 2.9 24 128-151 2-25 (26)
305 PRK13184 pknD serine/threonine 96.2 0.12 2.5E-06 42.1 10.5 109 52-165 479-590 (932)
306 PF07721 TPR_4: Tetratricopept 96.1 0.011 2.4E-07 25.0 2.8 25 49-73 2-26 (26)
307 KOG4814 Uncharacterized conser 96.1 0.17 3.7E-06 39.1 10.4 102 50-156 356-457 (872)
308 PF07079 DUF1347: Protein of u 96.1 0.4 8.6E-06 35.6 15.0 49 104-153 473-521 (549)
309 PF10516 SHNi-TPR: SHNi-TPR; 96.0 0.014 3.1E-07 27.3 3.2 29 128-156 2-30 (38)
310 COG0790 FOG: TPR repeat, SEL1 95.9 0.36 7.9E-06 33.7 12.2 120 29-160 128-270 (292)
311 KOG3364 Membrane protein invol 95.9 0.21 4.4E-06 30.7 10.2 77 47-133 31-111 (149)
312 KOG2300 Uncharacterized conser 95.8 0.54 1.2E-05 35.3 13.9 119 30-151 25-151 (629)
313 KOG1839 Uncharacterized protei 95.8 0.15 3.2E-06 42.2 9.7 124 30-157 954-1087(1236)
314 COG3629 DnrI DNA-binding trans 95.7 0.27 5.9E-06 34.2 9.4 51 105-155 165-215 (280)
315 KOG0546 HSP90 co-chaperone CPR 95.6 0.024 5.2E-07 40.2 4.3 115 52-170 226-352 (372)
316 PF09613 HrpB1_HrpK: Bacterial 95.5 0.34 7.3E-06 30.7 10.2 61 107-167 24-84 (160)
317 PF08631 SPO22: Meiosis protei 95.5 0.52 1.1E-05 32.9 11.5 103 58-164 3-124 (278)
318 KOG1258 mRNA processing protei 95.5 0.49 1.1E-05 36.1 10.8 106 47-163 296-402 (577)
319 PF12968 DUF3856: Domain of Un 95.4 0.29 6.2E-06 29.5 12.1 97 55-155 16-128 (144)
320 COG4649 Uncharacterized protei 95.4 0.42 9E-06 30.9 13.9 119 30-155 74-195 (221)
321 KOG1914 mRNA cleavage and poly 95.3 0.94 2E-05 34.5 13.0 54 103-156 411-464 (656)
322 KOG1550 Extracellular protein 95.2 0.75 1.6E-05 35.5 11.5 113 29-154 308-424 (552)
323 PF11207 DUF2989: Protein of u 95.1 0.57 1.2E-05 30.9 9.6 56 87-147 139-198 (203)
324 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.03 6.6E-07 26.2 2.4 29 49-77 2-30 (38)
325 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.29 6.2E-06 27.0 6.9 65 50-122 8-72 (80)
326 TIGR02561 HrpB1_HrpK type III 95.0 0.49 1.1E-05 29.6 9.2 83 51-144 13-95 (153)
327 TIGR02561 HrpB1_HrpK type III 94.9 0.18 4E-06 31.5 6.1 50 30-79 26-75 (153)
328 COG2909 MalT ATP-dependent tra 94.9 1.6 3.5E-05 35.2 12.6 117 47-167 414-541 (894)
329 PF10373 EST1_DNA_bind: Est1 D 94.9 0.15 3.3E-06 35.2 6.6 46 33-78 1-46 (278)
330 KOG4814 Uncharacterized conser 94.9 0.35 7.5E-06 37.5 8.5 62 104-165 365-432 (872)
331 KOG2581 26S proteasome regulat 94.9 1.1 2.4E-05 32.9 11.9 127 30-161 142-281 (493)
332 smart00386 HAT HAT (Half-A-TPR 94.8 0.092 2E-06 22.9 3.6 26 142-167 2-27 (33)
333 KOG1258 mRNA processing protei 94.7 1.5 3.2E-05 33.7 14.4 131 30-170 313-484 (577)
334 KOG2114 Vacuolar assembly/sort 94.7 1.2 2.6E-05 35.7 11.1 53 27-80 347-401 (933)
335 KOG4151 Myosin assembly protei 94.7 0.17 3.6E-06 39.7 6.6 109 53-166 58-166 (748)
336 smart00386 HAT HAT (Half-A-TPR 94.7 0.15 3.3E-06 22.2 4.3 30 107-136 1-30 (33)
337 KOG1914 mRNA cleavage and poly 94.6 1.3 2.8E-05 33.9 10.7 95 38-145 10-105 (656)
338 TIGR03504 FimV_Cterm FimV C-te 94.5 0.24 5.3E-06 24.0 5.1 25 131-155 3-27 (44)
339 PF07720 TPR_3: Tetratricopept 94.4 0.11 2.4E-06 24.0 3.4 32 48-79 1-34 (36)
340 PRK13184 pknD serine/threonine 94.1 1.9 4.1E-05 35.5 11.6 85 6-95 515-599 (932)
341 COG3118 Thioredoxin domain-con 94.1 1.4 3E-05 30.9 10.4 111 47-169 133-244 (304)
342 COG3947 Response regulator con 94.0 0.38 8.2E-06 33.7 6.6 50 104-153 290-339 (361)
343 KOG1464 COP9 signalosome, subu 93.9 1.3 2.7E-05 31.0 8.9 47 29-75 42-92 (440)
344 PF10255 Paf67: RNA polymerase 93.7 1.6 3.5E-05 32.2 9.6 109 43-154 68-191 (404)
345 COG2912 Uncharacterized conser 93.3 0.27 5.8E-06 33.9 5.0 51 30-80 197-247 (269)
346 COG4455 ImpE Protein of avirul 93.3 1.4 3E-05 29.7 8.0 57 107-163 15-71 (273)
347 COG3914 Spy Predicted O-linked 93.0 3.4 7.4E-05 31.9 12.3 99 30-133 83-182 (620)
348 COG3629 DnrI DNA-binding trans 92.7 0.94 2E-05 31.6 7.0 47 30-76 169-215 (280)
349 COG4455 ImpE Protein of avirul 92.5 1.7 3.7E-05 29.3 7.6 50 30-79 17-66 (273)
350 PF07079 DUF1347: Protein of u 92.5 1.7 3.7E-05 32.5 8.2 25 55-79 469-493 (549)
351 PF10255 Paf67: RNA polymerase 92.4 1.8 3.8E-05 32.0 8.3 68 50-122 124-193 (404)
352 KOG0529 Protein geranylgeranyl 92.3 3.5 7.7E-05 30.4 12.3 129 30-167 45-189 (421)
353 PF11846 DUF3366: Domain of un 92.1 2 4.4E-05 28.1 7.8 52 109-161 127-178 (193)
354 COG5536 BET4 Protein prenyltra 92.0 3.1 6.7E-05 29.1 10.0 138 26-168 86-234 (328)
355 TIGR03504 FimV_Cterm FimV C-te 92.0 0.41 8.9E-06 23.2 3.3 27 51-77 2-28 (44)
356 KOG2422 Uncharacterized conser 92.0 4.7 0.0001 31.2 12.1 99 30-129 254-379 (665)
357 cd02682 MIT_AAA_Arch MIT: doma 91.9 0.94 2E-05 24.8 5.0 26 109-134 29-54 (75)
358 PF10345 Cohesin_load: Cohesin 91.8 5.3 0.00012 31.4 11.3 102 50-151 303-428 (608)
359 KOG3807 Predicted membrane pro 91.7 3.8 8.2E-05 29.6 9.9 29 130-158 278-306 (556)
360 PF09797 NatB_MDM20: N-acetylt 91.4 4.3 9.3E-05 29.6 11.6 49 26-74 195-243 (365)
361 PF11817 Foie-gras_1: Foie gra 91.2 3.5 7.7E-05 28.3 8.8 26 50-75 180-205 (247)
362 PF10602 RPN7: 26S proteasome 91.1 2.9 6.2E-05 27.1 10.4 90 30-124 52-144 (177)
363 KOG2041 WD40 repeat protein [G 91.1 2.4 5.2E-05 33.7 8.1 109 30-154 679-823 (1189)
364 KOG0890 Protein kinase of the 90.7 8 0.00017 35.1 11.4 106 44-162 1666-1790(2382)
365 PF00244 14-3-3: 14-3-3 protei 90.6 2.4 5.3E-05 28.9 7.2 46 109-154 142-196 (236)
366 PF04190 DUF410: Protein of un 90.5 4.3 9.4E-05 28.1 10.9 103 24-156 67-170 (260)
367 PF12854 PPR_1: PPR repeat 90.1 1 2.2E-05 20.2 4.1 27 126-152 6-32 (34)
368 KOG2422 Uncharacterized conser 89.7 8.1 0.00017 30.1 15.4 130 19-159 296-451 (665)
369 KOG3616 Selective LIM binding 88.8 5.8 0.00013 32.0 8.6 79 51-149 768-846 (1636)
370 COG3947 Response regulator con 88.6 3.6 7.8E-05 29.1 6.7 58 51-119 282-339 (361)
371 KOG0985 Vesicle coat protein c 88.5 14 0.00031 31.2 12.3 40 107-154 1208-1247(1666)
372 KOG2041 WD40 repeat protein [G 88.3 6.4 0.00014 31.5 8.5 82 48-152 796-877 (1189)
373 PF11846 DUF3366: Domain of un 87.9 3.2 6.9E-05 27.2 6.2 53 26-79 123-175 (193)
374 cd02680 MIT_calpain7_2 MIT: do 87.9 1.4 2.9E-05 24.2 3.6 16 107-122 20-35 (75)
375 PF10345 Cohesin_load: Cohesin 87.8 12 0.00026 29.6 17.3 131 27-163 34-177 (608)
376 PF15015 NYD-SP12_N: Spermatog 87.4 10 0.00023 28.4 9.7 57 51-118 231-287 (569)
377 KOG0546 HSP90 co-chaperone CPR 87.0 1.1 2.3E-05 32.3 3.6 82 50-142 277-358 (372)
378 PF09670 Cas_Cas02710: CRISPR- 86.7 11 0.00023 27.9 10.2 48 30-77 147-198 (379)
379 KOG4014 Uncharacterized conser 86.5 7.3 0.00016 25.7 8.7 104 45-158 31-143 (248)
380 PF12753 Nro1: Nuclear pore co 86.4 1.5 3.3E-05 32.1 4.2 38 24-63 328-365 (404)
381 COG5600 Transcription-associat 86.3 11 0.00024 27.6 8.9 74 86-159 170-252 (413)
382 KOG3616 Selective LIM binding 86.0 3.9 8.5E-05 32.9 6.4 25 129-153 767-791 (1636)
383 PF04053 Coatomer_WDAD: Coatom 86.0 13 0.00028 28.1 9.9 42 107-153 332-373 (443)
384 PF02064 MAS20: MAS20 protein 85.8 3.7 8E-05 24.8 5.0 33 132-164 68-100 (121)
385 smart00299 CLH Clathrin heavy 85.8 6.1 0.00013 24.2 12.5 42 30-72 23-64 (140)
386 PF14863 Alkyl_sulf_dimr: Alky 85.8 4.9 0.00011 25.1 5.7 40 105-144 82-121 (141)
387 cd02682 MIT_AAA_Arch MIT: doma 85.1 4.6 0.0001 22.1 5.9 35 20-54 19-53 (75)
388 PF11817 Foie-gras_1: Foie gra 84.8 10 0.00023 26.0 9.5 58 93-154 182-245 (247)
389 KOG1839 Uncharacterized protei 84.6 15 0.00032 31.5 9.1 123 30-156 989-1128(1236)
390 PF11207 DUF2989: Protein of u 84.4 6.6 0.00014 26.1 6.0 38 30-67 156-197 (203)
391 PF14863 Alkyl_sulf_dimr: Alky 84.4 6.1 0.00013 24.6 5.7 45 125-169 68-112 (141)
392 PF01535 PPR: PPR repeat; Int 84.3 2.3 4.9E-05 18.0 3.1 25 130-154 3-27 (31)
393 cd02677 MIT_SNX15 MIT: domain 84.3 1.2 2.5E-05 24.4 2.3 17 60-76 18-34 (75)
394 KOG0890 Protein kinase of the 83.8 15 0.00032 33.6 9.2 89 63-157 1644-1732(2382)
395 PRK15490 Vi polysaccharide bio 83.6 19 0.00042 28.2 10.2 83 56-151 16-98 (578)
396 KOG1497 COP9 signalosome, subu 83.4 15 0.00032 26.6 10.6 101 49-154 104-211 (399)
397 KOG0686 COP9 signalosome, subu 83.3 17 0.00036 27.2 10.2 99 48-154 150-256 (466)
398 PF04212 MIT: MIT (microtubule 82.8 3.4 7.4E-05 22.0 3.7 25 52-76 9-33 (69)
399 COG2909 MalT ATP-dependent tra 82.6 26 0.00056 28.9 12.2 107 30-142 431-552 (894)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 81.7 9.4 0.0002 23.2 6.2 46 66-120 81-126 (126)
401 PRK15180 Vi polysaccharide bio 81.7 22 0.00047 27.4 8.5 93 59-162 300-392 (831)
402 PF09797 NatB_MDM20: N-acetylt 81.4 7 0.00015 28.6 6.0 46 107-152 197-242 (365)
403 COG5107 RNA14 Pre-mRNA 3'-end 81.2 22 0.00048 27.1 10.5 53 103-155 442-494 (660)
404 KOG3783 Uncharacterized conser 80.7 9.6 0.00021 29.3 6.4 24 52-75 453-476 (546)
405 KOG3807 Predicted membrane pro 80.1 20 0.00044 26.1 11.7 117 30-148 200-332 (556)
406 PF12753 Nro1: Nuclear pore co 79.2 5.7 0.00012 29.3 4.7 46 109-156 334-391 (404)
407 KOG2581 26S proteasome regulat 79.1 24 0.00053 26.4 9.7 122 30-160 225-353 (493)
408 PHA02537 M terminase endonucle 78.7 18 0.0004 24.7 8.5 103 58-161 93-212 (230)
409 PF08238 Sel1: Sel1 repeat; I 78.6 4.9 0.00011 18.1 3.9 28 128-155 2-36 (39)
410 PF02184 HAT: HAT (Half-A-TPR) 77.9 5.1 0.00011 17.9 3.7 26 108-134 2-27 (32)
411 smart00671 SEL1 Sel1-like repe 77.9 4.9 0.00011 17.7 3.7 27 129-155 3-33 (36)
412 cd02681 MIT_calpain7_1 MIT: do 77.6 6.3 0.00014 21.7 3.7 24 53-76 11-34 (76)
413 COG5107 RNA14 Pre-mRNA 3'-end 77.5 30 0.00064 26.5 12.3 122 30-166 25-157 (660)
414 KOG3783 Uncharacterized conser 77.2 32 0.00069 26.7 10.8 85 31-124 250-334 (546)
415 KOG1464 COP9 signalosome, subu 77.2 17 0.00036 25.7 6.3 48 107-154 41-92 (440)
416 TIGR00756 PPR pentatricopeptid 77.1 4.9 0.00011 17.2 3.7 26 130-155 3-28 (35)
417 KOG0276 Vesicle coat complex C 76.8 32 0.00068 27.3 8.1 35 45-79 663-697 (794)
418 KOG4279 Serine/threonine prote 76.3 21 0.00044 29.1 7.2 108 26-135 299-408 (1226)
419 KOG4056 Translocase of outer m 76.0 12 0.00027 23.1 4.9 36 132-167 86-121 (143)
420 PF15469 Sec5: Exocyst complex 75.3 20 0.00042 23.3 6.9 28 141-168 153-180 (182)
421 cd02683 MIT_1 MIT: domain cont 75.1 12 0.00025 20.6 6.5 15 60-74 18-32 (77)
422 KOG0985 Vesicle coat protein c 75.0 53 0.0011 28.2 11.5 61 46-122 1102-1162(1666)
423 COG4259 Uncharacterized protei 74.9 12 0.00025 22.0 4.3 41 127-167 72-112 (121)
424 KOG1538 Uncharacterized conser 74.7 33 0.00072 27.5 7.8 47 104-154 784-831 (1081)
425 PF13041 PPR_2: PPR repeat fam 74.6 8.3 0.00018 18.7 5.8 28 128-155 4-31 (50)
426 PF13226 DUF4034: Domain of un 74.3 27 0.00058 24.7 6.8 37 108-144 114-150 (277)
427 KOG3677 RNA polymerase I-assoc 73.6 9.5 0.00021 28.5 4.6 63 52-122 239-301 (525)
428 cd02679 MIT_spastin MIT: domai 72.7 9 0.0002 21.2 3.5 17 107-123 3-19 (79)
429 PF13226 DUF4034: Domain of un 71.9 32 0.0007 24.3 9.8 60 111-170 61-142 (277)
430 TIGR00985 3a0801s04tom mitocho 71.1 17 0.00037 22.9 4.8 33 132-164 95-128 (148)
431 PF14689 SPOB_a: Sensor_kinase 71.0 13 0.00028 19.4 4.2 39 116-154 12-50 (62)
432 PF04053 Coatomer_WDAD: Coatom 69.2 48 0.001 25.2 10.9 31 46-76 345-375 (443)
433 COG4941 Predicted RNA polymera 68.9 43 0.00094 24.5 13.6 142 23-170 205-408 (415)
434 PF02064 MAS20: MAS20 protein 68.5 18 0.00039 21.9 4.4 29 51-79 66-94 (121)
435 PF05053 Menin: Menin; InterP 68.4 39 0.00084 26.5 6.9 59 112-170 298-367 (618)
436 PF09205 DUF1955: Domain of un 68.1 27 0.00058 21.9 7.3 41 37-77 109-149 (161)
437 KOG2758 Translation initiation 67.6 45 0.00098 24.3 8.5 82 32-122 113-196 (432)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 66.7 26 0.00057 21.3 12.1 46 109-154 79-126 (126)
439 KOG0276 Vesicle coat complex C 66.7 65 0.0014 25.7 8.9 105 30-154 623-748 (794)
440 PF01239 PPTA: Protein prenylt 66.4 10 0.00022 16.4 4.7 26 113-138 3-28 (31)
441 PF09205 DUF1955: Domain of un 65.0 32 0.00068 21.6 11.7 53 104-156 97-149 (161)
442 KOG0889 Histone acetyltransfer 64.9 50 0.0011 32.0 7.8 98 47-153 2811-2912(3550)
443 cd00280 TRFH Telomeric Repeat 64.7 38 0.00083 22.4 8.1 36 133-169 117-152 (200)
444 KOG0687 26S proteasome regulat 63.7 55 0.0012 23.9 11.5 106 47-158 103-212 (393)
445 cd02684 MIT_2 MIT: domain cont 62.6 21 0.00044 19.5 3.6 21 56-76 14-34 (75)
446 PF15297 CKAP2_C: Cytoskeleton 61.6 45 0.00096 24.4 5.9 50 110-159 120-172 (353)
447 PF13812 PPR_3: Pentatricopept 61.0 13 0.00029 15.8 3.8 25 130-154 4-28 (34)
448 PHA02537 M terminase endonucle 60.2 37 0.0008 23.2 5.1 20 107-126 192-211 (230)
449 cd02656 MIT MIT: domain contai 60.1 26 0.00056 18.9 4.1 20 57-76 15-34 (75)
450 KOG2561 Adaptor protein NUB1, 59.5 72 0.0016 24.4 6.7 26 130-155 270-295 (568)
451 PF09670 Cas_Cas02710: CRISPR- 58.8 73 0.0016 23.7 7.1 53 104-156 142-198 (379)
452 PF05053 Menin: Menin; InterP 58.2 92 0.002 24.6 7.7 52 22-75 294-345 (618)
453 KOG2997 F-box protein FBX9 [Ge 57.5 40 0.00087 24.4 5.0 19 107-125 33-51 (366)
454 COG5536 BET4 Protein prenyltra 57.5 12 0.00026 26.4 2.6 101 30-135 126-235 (328)
455 KOG4279 Serine/threonine prote 57.5 11 0.00024 30.5 2.6 111 47-160 200-320 (1226)
456 KOG4151 Myosin assembly protei 56.7 1.1E+02 0.0024 25.1 8.1 92 29-131 68-165 (748)
457 KOG0128 RNA-binding protein SA 56.7 1.2E+02 0.0025 25.3 11.5 118 30-156 95-219 (881)
458 KOG4563 Cell cycle-regulated h 56.4 25 0.00054 25.8 4.0 53 49-101 42-95 (400)
459 PF07219 HemY_N: HemY protein 54.7 42 0.00091 19.7 5.0 31 49-79 60-90 (108)
460 KOG0889 Histone acetyltransfer 54.7 1.4E+02 0.0031 29.4 8.8 39 127-165 2812-2850(3550)
461 KOG4014 Uncharacterized conser 54.5 62 0.0014 21.6 11.1 113 30-155 89-232 (248)
462 PRK15490 Vi polysaccharide bio 53.6 1.1E+02 0.0023 24.4 7.2 58 105-162 20-77 (578)
463 smart00101 14_3_3 14-3-3 homol 51.9 78 0.0017 21.9 8.7 46 109-154 144-198 (244)
464 PF15297 CKAP2_C: Cytoskeleton 50.4 73 0.0016 23.4 5.5 50 30-79 119-171 (353)
465 KOG4563 Cell cycle-regulated h 49.3 60 0.0013 24.0 5.0 42 107-148 55-104 (400)
466 PF12583 TPPII_N: Tripeptidyl 49.0 63 0.0014 20.0 4.9 31 107-137 90-120 (139)
467 PF10366 Vps39_1: Vacuolar sor 48.9 31 0.00066 20.4 3.1 28 128-155 40-67 (108)
468 COG5187 RPN7 26S proteasome re 47.6 1.1E+02 0.0023 22.2 10.1 105 47-157 114-222 (412)
469 cd02683 MIT_1 MIT: domain cont 47.5 48 0.001 18.2 6.6 26 22-47 21-46 (77)
470 PF00244 14-3-3: 14-3-3 protei 46.4 91 0.002 21.4 5.4 48 29-76 141-197 (236)
471 PRK11619 lytic murein transgly 45.9 1.6E+02 0.0035 23.8 15.8 49 107-155 326-374 (644)
472 KOG1920 IkappaB kinase complex 45.8 1.6E+02 0.0034 25.8 7.3 17 58-74 962-978 (1265)
473 PF06957 COPI_C: Coatomer (COP 45.6 1.3E+02 0.0029 22.8 9.3 113 51-163 207-336 (422)
474 TIGR00985 3a0801s04tom mitocho 45.4 66 0.0014 20.4 4.2 28 52-79 94-122 (148)
475 KOG0292 Vesicle coat complex C 44.4 2E+02 0.0043 24.5 10.1 116 50-165 993-1122(1202)
476 PF03745 DUF309: Domain of unk 43.9 49 0.0011 17.3 7.5 28 52-79 3-30 (62)
477 TIGR02996 rpt_mate_G_obs repea 43.4 40 0.00087 16.2 4.1 32 115-146 4-35 (42)
478 COG5600 Transcription-associat 41.8 1.5E+02 0.0032 22.2 6.6 67 55-125 184-252 (413)
479 PF10952 DUF2753: Protein of u 41.5 85 0.0018 19.4 9.2 72 51-126 4-87 (140)
480 TIGR02498 type_III_ssaH type I 41.2 64 0.0014 17.9 4.9 48 26-73 18-65 (79)
481 KOG3677 RNA polymerase I-assoc 41.1 1.6E+02 0.0035 22.5 7.3 47 104-154 246-299 (525)
482 KOG1076 Translation initiation 40.2 2.1E+02 0.0045 23.5 13.0 45 123-167 649-696 (843)
483 COG5159 RPN6 26S proteasome re 39.2 1.5E+02 0.0032 21.5 13.6 126 29-154 18-192 (421)
484 PF07980 SusD: SusD family; I 38.5 74 0.0016 21.6 4.2 30 47-76 132-161 (266)
485 KOG1920 IkappaB kinase complex 38.5 1.5E+02 0.0033 25.8 6.2 20 134-153 959-978 (1265)
486 cd00215 PTS_IIA_lac PTS_IIA, P 38.3 82 0.0018 18.3 3.9 31 46-76 13-43 (97)
487 smart00745 MIT Microtubule Int 38.0 68 0.0015 17.2 7.5 39 8-46 6-47 (77)
488 PF02255 PTS_IIA: PTS system, 37.8 83 0.0018 18.2 3.8 31 46-76 12-42 (96)
489 TIGR00823 EIIA-LAC phosphotran 37.3 86 0.0019 18.3 3.9 32 45-76 14-45 (99)
490 cd08977 SusD starch binding ou 36.9 1.6E+02 0.0036 21.3 5.9 54 24-77 135-210 (359)
491 PRK09591 celC cellobiose phosp 36.7 91 0.002 18.4 3.8 32 45-76 17-48 (104)
492 KOG4459 Membrane-associated pr 36.1 2E+02 0.0043 22.2 6.0 118 48-168 31-174 (471)
493 COG4649 Uncharacterized protei 35.4 1.4E+02 0.0029 19.9 11.8 98 30-138 110-211 (221)
494 PF07980 SusD: SusD family; I 34.4 99 0.0021 21.0 4.3 29 127-155 133-161 (266)
495 KOG3024 Uncharacterized conser 34.3 1.8E+02 0.0038 20.9 5.9 52 23-74 102-153 (312)
496 PRK10454 PTS system N,N'-diace 34.1 1.1E+02 0.0024 18.5 3.8 33 44-76 27-59 (115)
497 PF06287 DUF1039: Protein of u 34.1 80 0.0017 16.9 4.9 46 28-73 7-52 (66)
498 PRK15326 type III secretion sy 34.0 88 0.0019 17.5 3.1 18 112-129 26-43 (80)
499 PRK15356 type III secretion sy 33.9 85 0.0018 17.2 5.3 49 27-75 7-55 (75)
500 smart00777 Mad3_BUB1_I Mad3/BU 32.9 1.2E+02 0.0026 18.6 7.2 42 111-152 81-124 (125)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.87 E-value=2e-20 Score=116.33 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=111.0
Q ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHH
Q 039398 34 EAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAI 113 (172)
Q Consensus 34 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 113 (172)
...++++++.+|++ ++.+|.++...|++++|+..|++++.++| ....+++.+|.++... |++++|+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~----g~~~~A~ 78 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMML----KEYTTAI 78 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHH----hhHHHHH
Confidence 45778999999885 66789999999999999999999999998 6778888899888444 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 114 DDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
..|++++..+|+++.+++++|.++..+|++++|+..|.+++.+.|+++..+..+..
T Consensus 79 ~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 79 NFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998866554
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4.3e-20 Score=133.56 Aligned_cols=127 Identities=30% Similarity=0.269 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|..+|.++++..|....++.++|.+|-++|++++|+.+|+.++.+.| ..+.++.++|+.+..+ |+.
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-------~fAda~~NmGnt~ke~----g~v 438 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-------TFADALSNMGNTYKEM----GDV 438 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-------hHHHHHHhcchHHHHh----hhH
Confidence 33344444444444444444444444444444444444444444444444 4455555555555333 666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+.|+.+|.+++..+|..++++.+||.+|...|+..+|+..|+.+++++|+.+++.-.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 6666666666666666666666666666666666666666666666666666665444
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=8e-20 Score=132.17 Aligned_cols=152 Identities=24% Similarity=0.230 Sum_probs=138.5
Q ss_pred chhhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCC
Q 039398 2 QAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVK 81 (172)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~ 81 (172)
..+++|-.|-.-++.+-...+. ..+|+.+|.+++.+.|+.+++..++|.++.+.|.+++|...|.++++..|
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~------V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-- 385 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGS------VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-- 385 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccc------hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--
Confidence 4567888887777776644444 88999999999999999999999999999999999999999999999988
Q ss_pred ccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 82 TLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
..+.++.++|.++ ..+|++++|+.+|++++++.|..++++.++|..|..+|+.+.|++.|.+++.++|...
T Consensus 386 -----~~aaa~nNLa~i~----kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 386 -----EFAAAHNNLASIY----KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred -----hhhhhhhhHHHHH----HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 8888888888888 6669999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 039398 162 DAQAALDRL 170 (172)
Q Consensus 162 ~~~~~l~~l 170 (172)
++...|.-+
T Consensus 457 eAhsNLasi 465 (966)
T KOG4626|consen 457 EAHSNLASI 465 (966)
T ss_pred HHHhhHHHH
Confidence 998887654
No 4
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=3.4e-19 Score=114.68 Aligned_cols=130 Identities=27% Similarity=0.312 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+..|..-++++++.+|++..+|..++.+|...|+.+.|-+.|+++++++| ..+.++.+.|-++ ..+|++
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-------~~GdVLNNYG~FL----C~qg~~ 119 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-------NNGDVLNNYGAFL----CAQGRP 119 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-------CccchhhhhhHHH----HhCCCh
Confidence 88999999999999999999999999999999999999999999999999 8888999999888 555999
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKI--QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++|...|.+++.. .|.-+..+.++|.|..+.|+++.|..+|++++..+|+.+.+...+.++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 9999999999976 456678999999999999999999999999999999998877766553
No 5
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.83 E-value=7.2e-19 Score=114.75 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
...++++..+++++..+|++++.|..+|.++...|++++|+..|++++.++| +...++..+|.++. ...|
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-------~~~~~~~~lA~aL~---~~~g 122 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-------ENAELYAALATVLY---YQAG 122 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH---HhcC
Confidence 3478999999999999999999999999999999999999999999999998 66666777666431 2336
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 108 R--VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 108 ~--~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
+ +++|...++++++.+|+++.+++.+|.++...|++++|+..|+++++..|.+..-...+.
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 6 599999999999999999999999999999999999999999999999998765444443
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.2e-18 Score=130.24 Aligned_cols=129 Identities=21% Similarity=0.196 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ....+++.+|.++. ..|++
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~lg~~~~----~~g~~ 415 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-------EDPDIYYHRAQLHF----IKGEF 415 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----HcCCH
Confidence 78888888888888888888888888888888888888888888888877 45566677777663 33788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+..
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888777777788888888888888888888888777777776655543
No 7
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.80 E-value=4.8e-18 Score=104.85 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=111.7
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 35 AEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 35 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+| ....+++.+|.++... |++++|+.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~----~~~~~A~~ 72 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-------YNSRYWLGLAACCQML----KEYEEAID 72 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHH----HHHHHHHH
Confidence 457889999999999999999999999999999999999999888 5667788888887444 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.+++++..+|+++..++.+|.++...|++++|+..|+++++++|++...+....
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999988655444
No 8
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.8e-18 Score=117.54 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=123.8
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.....++|+.+|++++++||....+|..+|.-|..+++...|+..|+++++++| ..-.+||.+|+.|..+
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-------~DyRAWYGLGQaYeim--- 411 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-------RDYRAWYGLGQAYEIM--- 411 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-------hhHHHHhhhhHHHHHh---
Confidence 444599999999999999999999999999999999999999999999999999 7888999999999666
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+-..=|+-+|++++...|+++..|..+|.||.++++.++|++.|.+++.....+..++..|+.+
T Consensus 412 -~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 412 -KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred -cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877777666554
No 9
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.5e-18 Score=113.06 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
-+..-|.-+.+.++|++|+..|.++|.++| ..+..|++.+.+|. ++|+|+.|++.++.++.++|..+++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-------~nAVyycNRAAAy~----~Lg~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDP-------TNAVYYCNRAAAYS----KLGEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHH----HhcchHHHHHHHHHHHhcChHHHHH
Confidence 455567888899999999999999999999 66777777777774 4499999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|..+|.+|..+|++++|++.|++++.++|++...+..|...
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999988877543
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=1.2e-17 Score=126.33 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.+++..|++++|+.+|++++.++| .....++.+|.++ ..+|++
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-------~~~~~~~~la~~~----~~~g~~ 449 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-------DFIFSHIQLGVTQ----YKEGSI 449 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-------cCHHHHHHHHHHH----HHCCCH
Confidence 89999999999999999999999999999999999999999999999998 5556677788777 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++..
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999997543
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=4.5e-17 Score=112.86 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.....+...+.+++..|+...+
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777774444444444444333332221
Q ss_pred --------------HHHHhCCHHHHHHHHHHHHHh-------------------------------------CCCCHHHH
Q 039398 102 --------------MNRRAGRVDSAIDDLTEAVKI-------------------------------------QDDNVKAL 130 (172)
Q Consensus 102 --------------~~~~~~~~~~A~~~~~~~l~~-------------------------------------~~~~~~~~ 130 (172)
+....+++++|+..+.+.+.. .|..+++|
T Consensus 160 ~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~ 239 (296)
T PRK11189 160 QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETY 239 (296)
T ss_pred HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 111224455555555433321 22234568
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCC-CcHHHHHHHHhh
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEP-SWTDAQAALDRL 170 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~l 170 (172)
+++|.++...|++++|+.+|++++..+| +..+....+.++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 8889999999999999999999999986 666665555443
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=5e-17 Score=121.38 Aligned_cols=124 Identities=14% Similarity=-0.023 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ---------GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (172)
+++|+..|+++++.+|+++.++..+|.++... +++++|+..+++++.++| ..+.++..+|.++.
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-------~~~~a~~~lg~~~~ 349 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-------NNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHH
Confidence 78999999999999999999999999987744 348999999999999999 67777888887774
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
..|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+.
T Consensus 350 ----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 350 ----IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred ----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 449999999999999999999999999999999999999999999999999999987653
No 13
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-17 Score=121.04 Aligned_cols=137 Identities=18% Similarity=0.067 Sum_probs=120.6
Q ss_pred chhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 23 KSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
.....+-+++|..+|+.++..+|.+..+|+.+|++|.++++++.|.-+|++|++++| ....+.+..|..+..+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-------~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-------SNSVILCHIGRIQHQL 536 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-------cchhHHhhhhHHHHHh
Confidence 344556699999999999999999999999999999999999999999999999998 6677777788888544
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|+.++|+..+++|+.++|.++-..+..|.++..++++++|...+++.-++-|++..++..+.++
T Consensus 537 ----k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 537 ----KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred ----hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988888777654
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=5.4e-16 Score=103.43 Aligned_cols=134 Identities=23% Similarity=0.178 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhh--------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKG-------------------- 89 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-------------------- 89 (172)
+++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.....+...+
T Consensus 47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666777777777667777777777777777777777777777777766653222111111
Q ss_pred ---------HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 90 ---------DALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
..++.+|.++ ...|++++|+..+.+++..+|+++.++..+|.++...|++++|...+++++...|.+
T Consensus 127 ~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 127 EDPLYPQPARSLENAGLCA----LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred hccccccchHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2223333333 444777777777777777777777777777777777777777777777777776666
Q ss_pred HHHHHHH
Q 039398 161 TDAQAAL 167 (172)
Q Consensus 161 ~~~~~~l 167 (172)
+..+..+
T Consensus 203 ~~~~~~~ 209 (234)
T TIGR02521 203 AESLWLG 209 (234)
T ss_pred HHHHHHH
Confidence 6554433
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=8.1e-17 Score=100.16 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++| ....+++.+|.++... |++
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-------~~~~a~~~lg~~l~~~----g~~ 108 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-------SHPEPVYQTGVCLKMM----GEP 108 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHc----CCH
Confidence 99999999999999999999999999999999999999999999999998 7788888888888444 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVK 140 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 140 (172)
++|+..|.+++...|+++..+..+|.+....
T Consensus 109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 109 GLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=2.3e-16 Score=109.30 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhccCc---c-cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDY---K-DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p---~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
..+.++..+.+++...| . .+..++.+|.++...|++++|+..|++++.++| ....+++.+|.++ .
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~~----~ 109 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-------DMADAYNYLGIYL----T 109 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH----H
Confidence 36788999999996443 3 477899999999999999999999999999998 6778888999888 4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.+|++++|+..|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++.
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4499999999999999999999999999999999999999999999999999999873
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.6e-17 Score=119.47 Aligned_cols=127 Identities=23% Similarity=0.203 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.++.|+.+|++++.++|+...++..+|--+....+++.|+.+|+.++..+| ..-.+||.+|.+| .++++
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-------rhYnAwYGlG~vy----~Kqek 504 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-------RHYNAWYGLGTVY----LKQEK 504 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-------hhhHHHHhhhhhe----eccch
Confidence 388899999999999999999999999888889999999999999999888 7778899999988 66699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
++.|.-+|++|+.++|.+......+|.++..+|+.++|+..|++|+.++|.++-....
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999998765433
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=3e-16 Score=117.19 Aligned_cols=127 Identities=15% Similarity=0.006 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..++++++++|+++.++..+|.++...|++++|+..|++++.++| +...+++.+|.++. ..|++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~l~----~~G~~ 388 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-------ISADIKYYYGWNLF----MAGQL 388 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----HCCCH
Confidence 78899999999999999999999999999999999999999999999888 55566677776663 33788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-CCcHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIE-PSWTDAQAAL 167 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 167 (172)
++|+..++++++++|.++..++.++.++...|++++|+..+++++... |+++.++..+
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l 447 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ 447 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 888888888888888777666666666666777777877777777664 5566554444
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=2.1e-16 Score=123.34 Aligned_cols=128 Identities=10% Similarity=0.003 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..+++|+..|++++..+|+ +.++..+|.++...|++++|+..+++++.++| ....++..+|.++ ...|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-------d~~~a~~nLG~aL----~~~G 657 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-------NNSNYQAALGYAL----WDSG 657 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHCC
Confidence 3489999999999999996 89999999999999999999999999999998 6667788888877 4449
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+....
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence 999999999999999999999999999999999999999999999999999987665443
No 20
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=115.88 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=61.6
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
+|...|+|++|+.+|+.+|+.+|++...|..||-.+..-.+.++|+..|.+|+++.|.+..++..|.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 3455699999999999999999999999999999999999999999999999999999998876653
No 21
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=1.9e-16 Score=107.84 Aligned_cols=70 Identities=33% Similarity=0.455 Sum_probs=66.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
|++.-+++.+||..+.+++..+|++..++...+.+|.....|++|+..|+++++.+|++..+..++.+.+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 6777799999999999999999999999999999999999999999999999999999999999987654
No 22
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-16 Score=112.99 Aligned_cols=135 Identities=18% Similarity=0.116 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++-|..+|.+++.+.|++|-.+..+|.+.+..+.|.+|..+|+.++..-+............+.++|..+ ++++.+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~----Rkl~~~ 471 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY----RKLNKY 471 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH----HHHhhH
Confidence 8899999999999999999999999999999999999999999999322211111113344578889888 777999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..+++++.+.|.++.++..+|.+|..+|+++.|+.+|.+++.++|++..+...|.
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999977665553
No 23
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=3.3e-16 Score=104.69 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
....|.+|+..|.+||.++|.++..+.++|.+|.++|.++.|++..+.+|.++| ....+|.++|..+...
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-------~yskay~RLG~A~~~~--- 162 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-------HYSKAYGRLGLAYLAL--- 162 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHcc---
Confidence 334499999999999999999999999999999999999999999999999999 8888999999999555
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD 144 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 144 (172)
|++.+|++.|+++|.++|++...+.+|..+-..+++..
T Consensus 163 -gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 -GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988887777655
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=8.6e-16 Score=123.17 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc--hhhhh---H--HHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT--EKEKG---D--ALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~~~---~--~~~~~~~~~~~~ 102 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|..... +.... . .....|..+
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~--- 361 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA--- 361 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH---
Confidence 8999999999999999999999999999999999999999999999988854321 11100 1 112233333
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
...|++++|+..|++++..+|+++.++..+|.++...|++++|++.|+++++++|++..++..+..
T Consensus 362 -~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 362 -LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred -HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455999999999999999999999999999999999999999999999999999999988876654
No 25
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=2.2e-15 Score=104.84 Aligned_cols=148 Identities=9% Similarity=0.010 Sum_probs=123.0
Q ss_pred hhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-ChhHHHHHHHHhhCCCCCCc
Q 039398 4 KRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG-FKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+.|..+..++...-..... +++|+..+.+++.++|++..+|..++.++..+| ++++++..+++++..+|
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~------serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--- 103 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDER------SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--- 103 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---
Confidence 34566666555544433333 789999999999999999999999999999998 68999999999999988
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 83 LTEKEKGDALFKRAEVKMSMNRRAGR--VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
....+|...+.+... ++. +++++.++.++++.+|++..+|..+|.++...|+++++++++.++++.+|.+
T Consensus 104 ----knyqaW~~R~~~l~~----l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 104 ----KNYQIWHHRRWLAEK----LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred ----cchHHhHHHHHHHHH----cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 455556655555532 255 3788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 039398 161 TDAQAALD 168 (172)
Q Consensus 161 ~~~~~~l~ 168 (172)
..+|....
T Consensus 176 ~sAW~~R~ 183 (320)
T PLN02789 176 NSAWNQRY 183 (320)
T ss_pred hhHHHHHH
Confidence 99986553
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.9e-15 Score=118.18 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+.++++++..+|.+......++......|++++|+..+++++..+| . ...+..+|.++ .++|++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-------~-~~a~~~LA~~l----~~lG~~ 625 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-------S-ANAYVARATIY----RQRHNV 625 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------C-HHHHHHHHHHH----HHCCCH
Confidence 78899999999999998888777777777778999999999999999887 3 55677788777 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+..
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877654
No 27
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.70 E-value=2e-15 Score=114.13 Aligned_cols=123 Identities=10% Similarity=-0.022 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|...++.+++.+|++..++..++.++.+.+++++|+..+++++..+| +...+++.+|.+...+ |++
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------~~~~~~~~~a~~l~~~----g~~ 170 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------SSAREILLEAKSWDEI----GQS 170 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHHHHh----cch
Confidence 99999999999999999999999999999999999999999999999998 7888888888888555 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
++|+..|++++..+|+++.++..+|.++...|+.++|...|++++....+-...
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999999999999999999999999887665543
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=2.7e-15 Score=113.99 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhH----HHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTS----ALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+..+++++..+|+++.++..+|.++...|++++ |+..|++++.++| ....++..+|.++ ..
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~l----~~ 296 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-------DNVRIVTLYADAL----IR 296 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHH----HH
Confidence 7889999999999999999999999999999999986 7999999999888 5566777777777 44
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
+|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++....
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 48999999999999999999888888899999999999999999999988888876543
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.69 E-value=2.5e-15 Score=92.61 Aligned_cols=111 Identities=20% Similarity=0.056 Sum_probs=101.4
Q ss_pred HHhccC-cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHH
Q 039398 39 KAISFD-YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLT 117 (172)
Q Consensus 39 ~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (172)
-...+. ++..+..+.+|..++..|++++|...|+-+..++| .....|+.+|-++ +.+|+|++|+..|.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-------~~~~y~~gLG~~~----Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-------WSFDYWFRLGECC----QAQKHWGEAIYAYG 93 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHH----HHHhhHHHHHHHHH
Confidence 445667 78889999999999999999999999999999998 7888899999888 44499999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 118 EAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 118 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
+++.++|+++.++++.|.|+...|+.+.|.+.|+.++....+.
T Consensus 94 ~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 94 RAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999887433
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.69 E-value=4.3e-15 Score=116.01 Aligned_cols=135 Identities=21% Similarity=0.128 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhh----------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKE---------------------- 87 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~---------------------- 87 (172)
+++|+..+++++..+|+++.+++.+|.++...|++++|+..+++++...|........
T Consensus 38 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~ 117 (899)
T TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKT 117 (899)
T ss_pred hHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999887743322222
Q ss_pred ------hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 88 ------KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
....+..+|..+ ...|++++|+..|++++..+|+++.++..+|.++...|++++|...+++++..+|.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 118 LLDDEGAAELLALRGLAY----LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred cCCchhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 223333344443 4447777777777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHH
Q 039398 162 DAQAALD 168 (172)
Q Consensus 162 ~~~~~l~ 168 (172)
.++..+.
T Consensus 194 ~~~~~~~ 200 (899)
T TIGR02917 194 DALLLKG 200 (899)
T ss_pred HHHHHHH
Confidence 6665544
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=4.2e-15 Score=119.30 Aligned_cols=134 Identities=16% Similarity=0.062 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHH-----------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDAL----------------- 92 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~----------------- 92 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|.........+..+
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 899999999999999999999999999999999999999999999999985443322222221
Q ss_pred ------------------HHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 93 ------------------FKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 93 ------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..+|. .+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~----~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAE----ALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH----HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11112 23456999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHH
Q 039398 155 KIEPSWTDAQAAL 167 (172)
Q Consensus 155 ~~~p~~~~~~~~l 167 (172)
..+|+++.++..+
T Consensus 523 ~~~P~~~~~~~a~ 535 (1157)
T PRK11447 523 QQKPNDPEQVYAY 535 (1157)
T ss_pred HcCCCCHHHHHHH
Confidence 9999999876544
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.2e-15 Score=107.95 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++-...|.++..++|.+++.++.+|.+++-+++|++|+..|+++++++| ..+..+..++... .+++++
T Consensus 376 ~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-------e~~~~~iQl~~a~----Yr~~k~ 444 (606)
T KOG0547|consen 376 SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-------ENAYAYIQLCCAL----YRQHKI 444 (606)
T ss_pred cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-------hhhHHHHHHHHHH----HHHHHH
Confidence 77888999999999999999999999999999999999999999999999 5555555444444 444899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+++...|+.+....|+.++++...|.++..+++|++|++.|..++.+.|.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999998
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=8.2e-15 Score=98.60 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhccCcccH---HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH----
Q 039398 30 AKQAEAEADKAISFDYKDA---AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM---- 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 102 (172)
+++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|.... ...+++.+|.++...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD----ADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc----hHHHHHHHHHHHHHhcccc
Confidence 9999999999999999876 58899999999999999999999999998884332 223566666666321
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHccCCCcH---H
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKAL-----------------CLLGECYEVKKMRDEAKTAYESALKIEPSWT---D 162 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~ 162 (172)
+...|++++|+..|++++..+|++..++ ..+|.++...|++.+|+..|++++...|+.+ .
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE 204 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH
Confidence 1223789999999999999999986442 3678889999999999999999999987654 5
Q ss_pred HHHHHH
Q 039398 163 AQAALD 168 (172)
Q Consensus 163 ~~~~l~ 168 (172)
++..+.
T Consensus 205 a~~~l~ 210 (235)
T TIGR03302 205 ALARLV 210 (235)
T ss_pred HHHHHH
Confidence 555443
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=1.5e-14 Score=93.57 Aligned_cols=124 Identities=20% Similarity=0.114 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.+.|-+.|+++++++|++.+++.+.|.-++..|++++|...|++++.. | .+...+..+-++|.|. .++|+.
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P----~Y~~~s~t~eN~G~Ca----l~~gq~ 155 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-P----AYGEPSDTLENLGLCA----LKAGQF 155 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-C----CCCCcchhhhhhHHHH----hhcCCc
Confidence 788999999999999999999999999999999999999999999963 3 3446666777788777 455999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+.|.+.|+++++.+|+.+.....++..++..|++..|..++++.....+-..+
T Consensus 156 ~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 156 DQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred hhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 99999999999999999999999999999999999999999998877765444
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=5.8e-15 Score=112.20 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=109.7
Q ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHH
Q 039398 32 QAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDS 111 (172)
Q Consensus 32 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (172)
+|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++| ....++..+|.++ ...|++++
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-------~~~~a~~~La~~l----~~~G~~~e 336 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-------DLPYVRAMYARAL----RQVGQYTA 336 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHCCCHHH
Confidence 489999999999999999999999999999999999999999999988 5666677778777 44599999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 112 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
|+..|++++..+|+++..+..+|.++...|++++|+..|+++++.+|++..
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999888888899999999999999999999999998643
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.65 E-value=7.9e-15 Score=103.95 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+...|...+..|+|++|+..|++++.++| ....+++.+|.++. .+|++++|+..+++++.++|+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~----~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANI----KLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 56678999999999999999999999998 56677888888884 44999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.+|.++..+|++++|+..|++++.++|++..+...+..+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999987776654
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.5e-14 Score=100.76 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
...|++.|++|++++|.+..+|+.+|..|.-++...=|+-+|++++...| .....|..+|.+|..+ ++.
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-------nDsRlw~aLG~CY~kl----~~~ 448 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-------NDSRLWVALGECYEKL----NRL 448 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-------CchHHHHHHHHHHHHh----ccH
Confidence 67899999999999999999999999999999999999999999999988 7788889999998444 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
++|+.+|++++.....+..++..+|.+|..+++.++|..+|++.+.
T Consensus 449 ~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988899999999999999999999999999997
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=107.74 Aligned_cols=123 Identities=18% Similarity=0.086 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHHHHHhccCc--ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDY--KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
..+.+..-.+.|-.+....| .++++...+|.+|...|+|+.|+.+|+.+|...| .....|.++|-.+..-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-------nd~~lWNRLGAtLAN~- 477 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-------NDYLLWNRLGATLANG- 477 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-------chHHHHHHhhHHhcCC-
Confidence 44557777788888888888 7999999999999999999999999999999998 7888888898888444
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.+..+||..|++|+++.|....+++++|.++..+|.|++|+++|-.|+.+.+.
T Consensus 478 ---~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 478 ---NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred ---cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999988765
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=3.2e-14 Score=107.71 Aligned_cols=129 Identities=10% Similarity=0.095 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
...++..+.......|++++++.++|.+....|.+++|...++.++++.| +...+...++.++ .+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-------d~~~a~~~~a~~L----~~~~~~ 136 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-------DSSEAFILMLRGV----KRQQGI 136 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-------CcHHHHHHHHHHH----HHhccH
Confidence 44455555555666899999999999999999999999999999999999 7777777777777 455999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..+++++..+|+++.+++.+|.++...|++++|...|++++..+|+++.++..+..
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876654
No 40
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.63 E-value=2.7e-14 Score=86.02 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN- 126 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~- 126 (172)
++.++.+|..+...|++++|+..+.+++...|.. .....+++.+|.++... |++++|+..|++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----TYAPNAHYWLGEAYYAQ----GKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999999877622 22345677888888444 99999999999999998875
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 127 --VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 127 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.+++.+|.++...|++++|...+.+++...|++..+.....+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 119 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 119 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhcC
Confidence 67899999999999999999999999999999999887776653
No 41
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=5.2e-14 Score=97.99 Aligned_cols=129 Identities=14% Similarity=-0.015 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCh--hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFK--TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++++..+++++..+|++..+|..++.++...|+. ++++.++.++++.+| ....+|...+.+...+ |
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-------kNy~AW~~R~w~l~~l----~ 156 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-------KNYHAWSHRQWVLRTL----G 156 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHh----h
Confidence 78999999999999999999999999999999874 788999999999998 6677777777777444 9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCH----HHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK---KMR----DEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++++++++.++++.+|.+..+|+.++.+.... |.+ ++++.+..+++.++|+|..+|..+..
T Consensus 157 ~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 157 GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 999999999999999999999999999998776 333 57888889999999999999976643
No 42
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.8e-14 Score=97.27 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchh
Q 039398 7 FVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEK 86 (172)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 86 (172)
|+.|+.++.+.+ +..|+.+-+++|..+|++..++...|.++...|+.++|+-.|+.+..+.|.....+.
T Consensus 304 fV~~~~l~~~K~-----------~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 304 FVHAQLLYDEKK-----------FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred hhhhhhhhhhhh-----------HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH
Confidence 345555666666 999999999999999999999999999999999999999999999999985444444
Q ss_pred hhhHHHHHhhhHHHH-----------------------------------------------------------HHHHhC
Q 039398 87 EKGDALFKRAEVKMS-----------------------------------------------------------MNRRAG 107 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~~ 107 (172)
....+|...+.+-.+ +...-|
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 444444443333221 223338
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
.+.+++..+++.+...|+ ...+..+|.++...+.+++|...|..++.++|.+..+..+|.++.
T Consensus 453 ~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 888888888888888776 467888999999999999999999999999999999999998875
No 43
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.61 E-value=5.5e-14 Score=109.89 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++...| ....++..++.++ ...|+
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~~l~~~~----~~~~~- 819 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-------DNAVVLNNLAWLY----LELKD- 819 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HhcCc-
Confidence 78889999999999999999999999999999999999999999998887 4555666677766 44488
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..+++++...|+++..+..+|.++...|++++|...|+++++.+|.++.++..+..
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999888766643
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.61 E-value=3.6e-14 Score=100.59 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++| ....+++.+|.++..+ |++
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~a~~~lg~~~~~l----g~~ 86 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAKAYLRKGTACMKL----EEY 86 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHHHHh----CCH
Confidence 99999999999999999999999999999999999999999999999998 6777888899888544 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKK 141 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 141 (172)
++|+..|++++.++|+++.+...++.|...+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988866653
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=1.2e-13 Score=99.36 Aligned_cols=128 Identities=20% Similarity=0.114 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.+++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|. ....++..++..+ ...|+
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~l~~~~----~~~g~ 264 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE------YLSEVLPKLMECY----QALGD 264 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh------hHHHHHHHHHHHH----HHcCC
Confidence 3899999999999999999999999999999999999999999999987661 2234455666666 45599
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+++|+..++++++..|+... +..++.++...|++++|...++++++.+|++......+
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 99999999999999998754 48899999999999999999999999999988755333
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.4e-14 Score=101.45 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+..|.+.|+.+|.++|.++..++.+|.+|...++-++-...|+++.+++| ..+.+|+..|++...+ ++|
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-------~n~dvYyHRgQm~flL----~q~ 410 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-------ENPDVYYHRGQMRFLL----QQY 410 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-------CCCchhHhHHHHHHHH----HHH
Confidence 67888999999999999999999999999999999999999999999999 7777888888888666 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++.++|++.-++..++.+.++++.++++...|+.+....|+.++++..-.+
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe 470 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE 470 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998766544
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=1.5e-13 Score=98.93 Aligned_cols=126 Identities=16% Similarity=0.031 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|.+..++..++.++...|++++|+..+++++...|.... ......+..+|..+ ...|++
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~----~~~~~~ 196 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR--VEIAHFYCELAQQA----LARGDL 196 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHH----HhCCCH
Confidence 889999999999989988999999999999999999999999999887652211 11233345566555 444899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
++|+..|+++++.+|++..+++.+|.++...|++++|.+.|++++..+|.+.
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 9999999999998898888999999999999999999999999998888753
No 48
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-13 Score=93.03 Aligned_cols=130 Identities=20% Similarity=0.144 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++-+.-++.-+..+|+|++-|..+|.+|+..|++..|...|.+++++.|+ +...+..+|..+... ......
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-------n~~~~~g~aeaL~~~-a~~~~t 209 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-------NPEILLGLAEALYYQ-AGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHh-cCCccc
Confidence 777888888999999999999999999999999999999999999999994 444444444443222 122456
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.++...+++++..+|.+..+.+.||..++..|+|.+|...|+..++..|.+..-...+
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 8999999999999999999999999999999999999999999999999876644443
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-13 Score=98.42 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++++.......-.+|.-...-...|..++..|+|..|+.+|.++|..+| ..+..|.+.+.++..+ +.+
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-------~Da~lYsNRAac~~kL----~~~ 408 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-------EDARLYSNRAACYLKL----GEY 408 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHH----hhH
Confidence 45555555555555677777777889999999999999999999999998 7888888888888555 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
..|+..++.+++++|+...+|..-|.++..+.+|+.|.+.|++++..+|++.++...+.+
T Consensus 409 ~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=2.6e-14 Score=98.54 Aligned_cols=130 Identities=22% Similarity=0.124 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhccC--cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 29 LAKQAEAEADKAISFD--YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
.++++...++++.... |.++..|..+|.++...|+.++|+..|+++++.+| +...+...++.++ ...
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-------~~~~~~~~l~~~l----i~~ 193 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-------DDPDARNALAWLL----IDM 193 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-------T-HHHHHHHHHHH----CTT
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH----HHC
Confidence 3777888888766544 67889999999999999999999999999999988 4455555555555 344
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|+|+.....+..
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 888888888888888888888899999999999999999999999999999999887766654
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=2.3e-13 Score=105.34 Aligned_cols=127 Identities=17% Similarity=0.042 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++|+..+.++...+|....++..+|.++...|++++|+..|++++..+| ....++..++.++ ...|++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~la~~l----~~~g~~ 99 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-------QNDDYQRGLILTL----ADAGQY 99 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHCCCH
Confidence 77888888888888888888899999999999999999999999998887 4455566666666 344999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..+++++..+|+++. +..+|.++...|++++|+..|++++..+|+++.++..+.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999988 999999999999999999999999999999988776554
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=4.1e-13 Score=100.92 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT 84 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 84 (172)
..+..|..++++.+ +++|...+.+++..+|.++.+|+.+|.+|-++|+.+++...+-.+-.++|
T Consensus 141 ~ll~eAN~lfarg~-----------~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p----- 204 (895)
T KOG2076|consen 141 QLLGEANNLFARGD-----------LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP----- 204 (895)
T ss_pred HHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-----
Confidence 34445555566555 99999999999999999999999999999999999999999999999998
Q ss_pred hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 85 EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
.....|..++... ..+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+.+.++|
T Consensus 205 --~d~e~W~~ladls----~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 205 --KDYELWKRLADLS----EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred --CChHHHHHHHHHH----HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 3336677777666 4559999999999999999999999999999999999999999999999999999
No 53
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=9.7e-13 Score=86.36 Aligned_cols=127 Identities=24% Similarity=0.174 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+++|+..++-+|.+..++...-.+...+|+--+|++.+...++.-+ ....+|..++.+|... |+|
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-------~D~EAW~eLaeiY~~~----~~f 170 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-------NDQEAWHELAEIYLSE----GDF 170 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhH----hHH
Confidence 66677777777777776666666666666666666677776666666444 5566666666666544 888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKK---MRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++|.-++++++-.+|.++..+-.+|.+++.+| ++.-|.++|.++++++|.+..++.++
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 88888888888888888888888887777766 45677888888888888777777665
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.55 E-value=4.8e-13 Score=85.86 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=94.7
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 123 (172)
.+....+++.+|..+...|++++|+.+|++++...|.. .....++..+|.++ ..+|++++|+..+.+++...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIY----ASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhC
Confidence 34567789999999999999999999999999876521 12356778888888 55599999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHccCCCcH
Q 039398 124 DDNVKALCLLGECYEVKKM--------------RDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~ 161 (172)
|.+...+..+|.++...|+ +++|.+.+++++..+|++.
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999999999999999888 6889999999999999874
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=4.8e-13 Score=90.01 Aligned_cols=126 Identities=22% Similarity=0.148 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhccCcccHH---HHHHHHHHHHHh--------CChhHHHHHHHHhhCCCCCCccchhhhh---------
Q 039398 30 AKQAEAEADKAISFDYKDAA---AHILKALALDLQ--------GFKTSALESFDLALSIPAVKTLTEKEKG--------- 89 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~~~--------- 89 (172)
+++|+..|+++++..|+++. +++.+|.+++.. |++++|+..+++++...|.....+....
T Consensus 86 ~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 86 YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999998776 799999999987 8899999999999998885543221111
Q ss_pred -HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 90 -DALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN---VKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
...+.+|.++ ...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++......|+
T Consensus 166 ~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 166 AGKELYVARFY----LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHH----HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 0112334433 55599999999999999997764 589999999999999999999998887766653
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.53 E-value=1.7e-12 Score=83.00 Aligned_cols=125 Identities=11% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccCccc--HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKD--AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|. ....+.+++.+|.++ ...|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~----~~~g 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----PYDRSYILYNIGLIH----TSNG 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHH----HHcC
Confidence 555566666665555554 667899999999999999999999999987652 223456788888888 4449
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHccCCCcHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYE-------VKKMRD-------EAKTAYESALKIEPSWTD 162 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~~ 162 (172)
++++|+..+++++.++|.....+..+|.++. ..|+++ +|...|++++..+|++..
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 9999999999999999999999999999998 667765 777777788888986543
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.1e-14 Score=97.60 Aligned_cols=115 Identities=24% Similarity=0.227 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++.+|+++.++..++.++...|+++++...+.......| .....+..+|..+..+ |++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~la~~~~~l----g~~ 230 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP-------DDPDLWDALAAAYLQL----GRY 230 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-------TSCCHCHHHHHHHHHH----T-H
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-------CHHHHHHHHHHHhccc----ccc
Confidence 89999999999999999999999999999999999998888877776544 3333455566666444 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
++|+..|++++..+|+++..+..+|.++...|++++|...+++++.
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999998864
No 58
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.3e-13 Score=93.35 Aligned_cols=118 Identities=24% Similarity=0.220 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--------chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTL--------TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
.....|..+++.|+|..|...|++++..-..... .......++.+++.++ .++++|.+|+..+.++|.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~----lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY----LKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH----HhhhhHHHHHHHHHHHHh
Confidence 4566799999999999999999998854321111 1112233345555555 666999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 122 IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
.+|+|..+++..|.++..+|+++.|+..|+++++++|+|..+...|..++
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887664
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.51 E-value=1.9e-12 Score=100.35 Aligned_cols=127 Identities=11% Similarity=-0.071 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhccCcc---------------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHH
Q 039398 29 LAKQAEAEADKAISFDYK---------------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALF 93 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (172)
.+++|+..++++....|. ...++..+|.++...|++++|+..+++++...| ....+++
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-------~n~~l~~ 397 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-------GNQGLRI 397 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHH
Confidence 389999999999888762 245778899999999999999999999999988 5567788
Q ss_pred HhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 94 KRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
.+|.++ ...|++++|+..+++++..+|++..+++.+|.++...|++++|...++++++..|+++.+...
T Consensus 398 ~lA~l~----~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 398 DYASVL----QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHH----HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888887 444999999999999999999999999999999999999999999999999999999986543
No 60
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=1.2e-13 Score=75.25 Aligned_cols=67 Identities=25% Similarity=0.430 Sum_probs=61.2
Q ss_pred hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCC
Q 039398 88 KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK-MRDEAKTAYESALKIEP 158 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p 158 (172)
.+..|+.+|..+ ...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~----~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIY----FQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHH----HHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 355677888887 44499999999999999999999999999999999999 79999999999999998
No 61
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=3.7e-12 Score=90.49 Aligned_cols=129 Identities=18% Similarity=0.078 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|...++..+...|+|+..+-..+.++...++..+|.+.+++++.++| .......++|+.+... |++
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-------~~~~l~~~~a~all~~----g~~ 390 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP-------NSPLLQLNLAQALLKG----GKP 390 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------CccHHHHHHHHHHHhc----CCh
Confidence 77888888889999999999999999999999999999999999999998 5556667788887444 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.+|+..++..+..+|+++..|..|+..|..+|+..++...+.+...+......+...+.+
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999888888888888777776666555443
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=3.3e-12 Score=84.19 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=110.1
Q ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHH
Q 039398 32 QAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDS 111 (172)
Q Consensus 32 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (172)
.+.....++...+|.+......+|...+..|+|.+|+..++++..+.| ..+..|..+|-++ .+.|++++
T Consensus 84 ~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-------~d~~~~~~lgaal----dq~Gr~~~ 152 (257)
T COG5010 84 SSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-------TDWEAWNLLGAAL----DQLGRFDE 152 (257)
T ss_pred chHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-------CChhhhhHHHHHH----HHccChhH
Confidence 344455566667888888888899999999999999999999999998 6777777788777 44499999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 112 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|...|.+++++.|+++.+..++|..+.-.|+++.|...+..+....+.+..+...|..+
T Consensus 153 Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~ 211 (257)
T COG5010 153 ARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALV 211 (257)
T ss_pred HHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888877776654
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=7.3e-13 Score=100.40 Aligned_cols=135 Identities=19% Similarity=0.128 Sum_probs=120.8
Q ss_pred hhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 24 SSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
......+++|+..|.+++..+|.|..+-..+|.++...|++.+|...|.++.+- +.....+|.++|+++..+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-------~~~~~dv~lNlah~~~e~- 693 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-------TSDFEDVWLNLAHCYVEQ- 693 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH-------HhhCCceeeeHHHHHHHH-
Confidence 446667999999999999999999999999999999999999999999999873 335677889999999666
Q ss_pred HHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 104 RRAGRVDSAIDDLTEAVKIQ--DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
|+|-.|++.|+.++... .++..++..||.++...|.+.+|.+.+..++.+.|.++.+.+.+.-
T Consensus 694 ---~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 694 ---GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999874 3578999999999999999999999999999999999987766643
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.50 E-value=1.5e-12 Score=74.69 Aligned_cols=99 Identities=29% Similarity=0.406 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
+++.+|.++...|++++|+..+++++...| ....+++.+|.++... +++++|+..+++++...|.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-------DNADAYYNLAAAYYKL----GKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhH
Confidence 578899999999999999999999999887 3336677778777444 99999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+..+|.++...|++++|...+.+++..+|+
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999988874
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.9e-12 Score=98.26 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..+..++..+.++...+|.||.++..++.-++..|+|+.+......++.... .....+..+|.+|+.+.+. |
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~----~~~~~aes~Y~~gRs~Ha~----G 321 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE----NKSIKAESFYQLGRSYHAQ----G 321 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHhh----c
Confidence 3389999999999999999999999999999999999999999999986542 2335667789999999544 9
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 108 RVDSAIDDLTEAVKIQDDN-VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+|++|..+|.++++.+|++ .-.++.+|.++...|+.+.|...|++++...|++.+....|..+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 9999999999999999988 67899999999999999999999999999999999988877654
No 66
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.50 E-value=2.6e-12 Score=94.82 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--------hhHHHHHHHHhhCC--CCCCccchhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGF--------KTSALESFDLALSI--PAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
..+|+.+|+++++.+|+++.++-.++.++..... ...+.....+++.+ +| ..+.++..+|...
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~-------~~~~~~~ala~~~ 430 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN-------VLPRIYEILAVQA 430 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc-------CChHHHHHHHHHH
Confidence 7899999999999999999999999888766432 34555556665553 33 2334455455444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
. ..|++++|...+++++.++| +..++..+|.++...|++++|.+.|++|+.++|.++.
T Consensus 431 ~----~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 431 L----VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred H----hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2 23999999999999999999 5889999999999999999999999999999999886
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.4e-13 Score=92.96 Aligned_cols=123 Identities=28% Similarity=0.307 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhccCcccH------------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhh
Q 039398 30 AKQAEAEADKAISFDYKDA------------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAE 97 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (172)
.+.|+..|++++.++|+.. ..+...|.-.++.|+|..|.++|..+|.++|.+. ...+.+|.+++.
T Consensus 219 ~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~---~~naklY~nra~ 295 (486)
T KOG0550|consen 219 ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK---KTNAKLYGNRAL 295 (486)
T ss_pred hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc---chhHHHHHHhHh
Confidence 7899999999999999743 3566678999999999999999999999999633 345566777777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 98 VKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+. .++|+..+|+..++.++.++|...+++...|.|+..++++++|++.|+++++...+
T Consensus 296 v~----~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 296 VN----IRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hh----cccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77 45599999999999999999999999999999999999999999999999998876
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.49 E-value=3e-12 Score=86.86 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=99.6
Q ss_pred HHHHHHHHHHH-HHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 48 AAAHILKALAL-DLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 48 ~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
....+..|..+ +..|+|++|+..|+..+...|.. .....+++.+|.++.. .|++++|+..|.+++...|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCC
Confidence 46788888876 56799999999999999988832 2335678889988844 499999999999999988874
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 127 ---VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 127 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
+++++.+|.++..+|++++|...|+++++..|+...+.....+|.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 689999999999999999999999999999999999888877764
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=2.1e-12 Score=79.60 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+| .....++.+|.++ ...|++
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~----~~~g~~ 101 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------DDPRPYFHAAECL----LALGEP 101 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999988 5667778888877 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~ 130 (172)
++|+..++++++.+|++....
T Consensus 102 ~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 102 ESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHhccccchHH
Confidence 999999999999999887644
No 70
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.48 E-value=4.8e-12 Score=97.73 Aligned_cols=123 Identities=9% Similarity=-0.052 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+..|++.|+++++.+|.++.+...+..++...|+.++|+.++++++...| ........+|..+ ..+|++
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n-------~~~~~llalA~ly----~~~gdy 118 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN-------ISSRGLASAARAY----RNEKRW 118 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC-------CCHHHHHHHHHHH----HHcCCH
Confidence 78999999999999999865555888888888999999999999994433 2222333334455 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|++...
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 999999999999999999999999899999999999999999999999986654
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.1e-12 Score=86.77 Aligned_cols=129 Identities=21% Similarity=0.151 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
.++|++.|...++.+|...++.+.+|.++...|..+.|+..-+..++... - .......+.+.+|.-++.
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd-l--T~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD-L--TFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-C--chHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 88999999999999999999999999999999999999999888775322 1 112223333333333331
Q ss_pred -------------------------------------------------------------HHHHhCCHHHHHHHHHHHH
Q 039398 102 -------------------------------------------------------------MNRRAGRVDSAIDDLTEAV 120 (172)
Q Consensus 102 -------------------------------------------------------------~~~~~~~~~~A~~~~~~~l 120 (172)
.+....+.+.|+..+.+++
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 0122367888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+.+|++..+-..+|.+....|+|+.|++.|+.+++.+|+..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 88888888888999999999999999999999998888764
No 72
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.8e-12 Score=81.64 Aligned_cols=116 Identities=25% Similarity=0.255 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
+.+..-|.-++..|+|++|...|..+|.+.|..+. ...+.++.+.|.+. .+++.++.||..+.++++++|.+..
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~----iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAAL----IKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHH----HHhhhHHHHHHHHHhhHhcCchhHH
Confidence 34556689999999999999999999999884433 34555566666666 4559999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++...+.+|.++..+++|++.|++.+..+|....+..++.+|
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999999999999999888776
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=9.8e-12 Score=82.82 Aligned_cols=118 Identities=19% Similarity=0.059 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhccC--cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFD--YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++|+..+.+++... |.....+..+|.++...|++++|...+.+++..+| .....+..++.++ ...|
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~----~~~~ 183 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-------QRPESLLELAELY----YLRG 183 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CChHHHHHHHHHH----HHcC
Confidence 555555555555432 33444555556666666666666666666665554 2333455555555 4559
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999887766544
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.9e-12 Score=91.16 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|..|+..|.+++..+|+++..+.++|.||..+|.+..|+...+.+++++| .....|++.|.++..+ .+|
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-------~~~kgy~RKg~al~~m----k~y 442 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-------NFIKAYLRKGAALRAM----KEY 442 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHH----HHH
Confidence 99999999999999999999999999999999999999999999999998 7777888888888555 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
++|++.|+++++.+|++.++.-.+..|...+.......+.++++
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999999999999999999999988755445555555553
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.46 E-value=9.2e-12 Score=77.71 Aligned_cols=116 Identities=28% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...| .......+.+.++.++. ..
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~----d~~l~~~a~l~LA~~~~----~~ 98 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP----DPELKPLARLRLARILL----QQ 98 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHH----Hc
Confidence 666777788888888887 56788899999999999999999999998654 22234455677787774 44
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999966 33444556788999999999999999999999875
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=3.6e-12 Score=78.74 Aligned_cols=86 Identities=17% Similarity=0.068 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|...|+-+...+|.+++.|+++|.++-.+|+|++|+..|.+++.++| +.+..+++.|.++..+ |+.
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------ddp~~~~~ag~c~L~l----G~~ 119 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------DAPQAPWAAAECYLAC----DNV 119 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchHHHHHHHHHHHc----CCH
Confidence 99999999999999999999999999999999999999999999999998 7777788888888666 999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 039398 110 DSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~ 126 (172)
+.|...|+.++......
T Consensus 120 ~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 120 CYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999886433
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.46 E-value=4.3e-13 Score=72.13 Aligned_cols=58 Identities=34% Similarity=0.440 Sum_probs=53.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4559999999999999999999999999999999999999999999999999999985
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=2.4e-11 Score=90.41 Aligned_cols=168 Identities=21% Similarity=0.197 Sum_probs=127.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 3 AKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+.+++.|-.+--+++.....+.......+++..++++++.+|+|+.+.+.++.-|...++...|+.+.++++.+++...
T Consensus 433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 44566667666666676677777888899999999999999999999999999999999999999999999998865111
Q ss_pred c-chhhhhHHHHHhhhHHHH------------------------------------------------------------
Q 039398 83 L-TEKEKGDALFKRAEVKMS------------------------------------------------------------ 101 (172)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 101 (172)
. .|...+-++....+...+
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 0 111111111000000000
Q ss_pred --------------------------------------------------------------------------------
Q 039398 102 -------------------------------------------------------------------------------- 101 (172)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (172)
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence
Q ss_pred --------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHccCCC
Q 039398 102 --------------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKT--AYESALKIEPS 159 (172)
Q Consensus 102 --------------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~al~~~p~ 159 (172)
++...|+..+|.+.|..++.++|+++.....+|.++...|+..-|.. .+..+++++|.
T Consensus 673 L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 673 LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 23345888999999999999999999999999999999998888888 89999999999
Q ss_pred cHHHHHHHHhh
Q 039398 160 WTDAQAALDRL 170 (172)
Q Consensus 160 ~~~~~~~l~~l 170 (172)
++++|..|..+
T Consensus 753 n~eaW~~LG~v 763 (799)
T KOG4162|consen 753 NHEAWYYLGEV 763 (799)
T ss_pred CHHHHHHHHHH
Confidence 99999888764
No 79
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.5e-11 Score=79.89 Aligned_cols=130 Identities=22% Similarity=0.148 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.+.|..++++.....|.+.......|+.+-..|++++|+++|+..++-+|.+...+..+..+. ..+|+.
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAil-----------ka~GK~ 136 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAIL-----------KAQGKN 136 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHH-----------HHcCCc
Confidence 667888888888888999999999999999999999999999999998884444333222211 334888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
-+||+.+..-+...+.+.++|..++.+|...|+|++|.-.|++++-+.|.++-....++.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999877777654
No 80
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.44 E-value=1.7e-11 Score=80.62 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=115.1
Q ss_pred hhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC
Q 039398 4 KRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAV 80 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~ 80 (172)
...+..|...+...+ +.+|+..|++++...|.. +.+.+.+|.+++..|++.+|+..+++.+...|.
T Consensus 6 ~~lY~~a~~~~~~g~-----------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGD-----------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344556666666655 999999999999988864 678999999999999999999999999998883
Q ss_pred CccchhhhhHHHHHhhhHHHHH-------HHHhCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHH
Q 039398 81 KTLTEKEKGDALFKRAEVKMSM-------NRRAGRVDSAIDDLTEAVKIQDDNVKA-----------------LCLLGEC 136 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~l~~~~~~~~~-----------------~~~l~~~ 136 (172)
.+....+++.+|.++... ...++...+|+..|+..+...|++.-+ -+.+|..
T Consensus 75 ----~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 75 ----SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766543 233455679999999999999987422 3456899
Q ss_pred HHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 137 YEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 137 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|.+.|.+..|+..++.+++..|+.+.+-..|..+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999999999999999999999998876666543
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1e-11 Score=89.59 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
+.+|..+|.++..++|....+|...|..+...|+.+.|+.+|..+-++-|....+....+.-+....+...+
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999888774444433333333333322221
Q ss_pred ---------------HHHHhCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 102 ---------------MNRRAGRVDSAIDDLTEAVKIQ----DD---NVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 102 ---------------~~~~~~~~~~A~~~~~~~l~~~----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+....+.|.+|..+|+.++..- +. ....+.+||.++.+++.+++|+..|++++.+.|.
T Consensus 408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 1122278888888888887432 11 2345889999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 039398 160 WTDAQAALD 168 (172)
Q Consensus 160 ~~~~~~~l~ 168 (172)
++.++..+.
T Consensus 488 ~~~~~asig 496 (611)
T KOG1173|consen 488 DASTHASIG 496 (611)
T ss_pred chhHHHHHH
Confidence 998776554
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.43 E-value=1.3e-12 Score=70.90 Aligned_cols=66 Identities=33% Similarity=0.458 Sum_probs=61.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++..+..+++|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 349999999999999999999999999999999999999999999999999999999988887764
No 83
>PRK11906 transcriptional regulator; Provisional
Probab=99.43 E-value=3e-11 Score=86.17 Aligned_cols=123 Identities=16% Similarity=0.047 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHh---ccCcccHHHHHHHHHHHHHh---------CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhh
Q 039398 30 AKQAEAEADKAI---SFDYKDAAAHILKALALDLQ---------GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAE 97 (172)
Q Consensus 30 ~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (172)
.+.|+.+|.+++ .++|+.+.++..++.|++.. ....+|.+..+++++++| ..+.+++.+|.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-------~Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-------VDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence 788999999999 99999999999999999865 234688999999999998 77888888888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 98 VKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
...-. ++++.|+..|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|....+
T Consensus 347 ~~~~~----~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 347 ITGLS----GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHhh----cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 77444 889999999999999999999999999999999999999999999999999986554
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=5.5e-12 Score=93.73 Aligned_cols=122 Identities=24% Similarity=0.271 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.+++..++.++-.++|-.+..|+..|.++...|++++|...|..++.++|.+ ..+...+|.++... |+-
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-------v~s~~Ala~~lle~----G~~ 734 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-------VPSMTALAELLLEL----GSP 734 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-------cHHHHHHHHHHHHh----CCc
Confidence 5677778889999999999999999999999999999999999999999944 44444555555333 665
Q ss_pred HHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 110 DSAID--DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 110 ~~A~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.-|.. .+..+++++|.++++|+.+|.++..+|+.++|.+.|..++++++.+|.
T Consensus 735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 55555 999999999999999999999999999999999999999999998874
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=89.05 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++-|+.+|++.++..-.+++.+.++|.|++-.++++-++..|++++.... .....+++||++|.+.-.+ |++
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat----~~~~aaDvWYNlg~vaV~i----GD~ 411 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT----QPGQAADVWYNLGFVAVTI----GDF 411 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc----CcchhhhhhhccceeEEec----cch
Confidence 66677777777777777788888888888888888888888888876532 2235677888888877545 888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
.-|..+|+-++..+|++.+++.++|.+-...|+.++|...+..+-...|+-.+....
T Consensus 412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 888888888888888888888888888888888888888888888888876654433
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=8.2e-12 Score=81.69 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=87.5
Q ss_pred hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH
Q 039398 61 QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY-EV 139 (172)
Q Consensus 61 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~-~~ 139 (172)
.++.++++..+++++..+| .....|+.+|.++... |++++|+..|+++++++|+++.++..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-------~~~~~w~~Lg~~~~~~----g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-------QNSEQWALLGEYYLWR----NDYDNALLAYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 6777999999999999998 7788899999988544 9999999999999999999999999999975 67
Q ss_pred ccC--HHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 140 KKM--RDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 140 ~~~--~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.|+ +++|.+.++++++.+|+++.++..+.
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 787 59999999999999999999887765
No 87
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.9e-12 Score=87.88 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH---------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM--------- 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------- 100 (172)
|.+|+..|..++...|++...|.+.+.+++..|+|++|....++.++++|...........++..++....
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999988444433333333333332221
Q ss_pred --------------------------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 039398 101 --------------------------------SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKT 148 (172)
Q Consensus 101 --------------------------------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 148 (172)
.|+..++++++|...--.++++++.+.++++..|.|++..++.+.|+.
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~ 224 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAIN 224 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHH
Confidence 145566999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHH
Q 039398 149 AYESALKIEPSWTDAQAA 166 (172)
Q Consensus 149 ~~~~al~~~p~~~~~~~~ 166 (172)
.|++++.++|+...+...
T Consensus 225 hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSA 242 (486)
T ss_pred HHhhhhccChhhhhHHhH
Confidence 999999999998776543
No 88
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.39 E-value=5.3e-11 Score=80.21 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhccCcccHHH---HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH---
Q 039398 30 AKQAEAEADKAISFDYKDAAA---HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN--- 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 103 (172)
+++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|. .+....+++.+|.++....
T Consensus 48 y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 48 WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----HPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----CCchHHHHHHHHHhhhhcchhh
Confidence 999999999999999988665 489999999999999999999999999994 4456667787776642220
Q ss_pred -----------HHhCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 104 -----------RRAGRVDSAIDDLTEAVKIQDDNVKA-----------------LCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 104 -----------~~~~~~~~A~~~~~~~l~~~~~~~~~-----------------~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+.+....+|+..|++.++..|++.-+ -+..|..|.+.|.+..|+.-++.++.
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 11122467889999999999987421 24568889999999999999999999
Q ss_pred cCCCcHHHHHHHHh
Q 039398 156 IEPSWTDAQAALDR 169 (172)
Q Consensus 156 ~~p~~~~~~~~l~~ 169 (172)
..|+.+..-..|-.
T Consensus 204 ~Yp~t~~~~eal~~ 217 (243)
T PRK10866 204 DYPDTQATRDALPL 217 (243)
T ss_pred HCCCCchHHHHHHH
Confidence 99988776555543
No 89
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.39 E-value=2.3e-12 Score=70.10 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG-RVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~ 124 (172)
++.+|..+|.+++..|++++|+.+|+++++++| ..+.+++.+|.++ ..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-------~~~~~~~~~g~~~----~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-------NNAEAYYNLGLAY----MKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-------THHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH----HHhCccHHHHHHHHHHHHHcCc
Confidence 678899999999999999999999999999988 7778889999888 4448 79999999999999987
No 90
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.9e-11 Score=83.77 Aligned_cols=118 Identities=24% Similarity=0.256 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhccCc-------c--------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDY-------K--------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFK 94 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p-------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (172)
|..|+..|++++..-+ . -..++.+++.|+.++++|.+|+...+++|.++| .+..++|+
T Consensus 224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-------~N~KALyR 296 (397)
T KOG0543|consen 224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-------NNVKALYR 296 (397)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-------CchhHHHH
Confidence 7777777777655422 1 234789999999999999999999999999998 88899999
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHccCC
Q 039398 95 RAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEA-KTAYESALKIEP 158 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~p 158 (172)
.|.++..+ ++|+.|+..|+++++++|.|..+...+..+..+..++.+. .+.|...+..-+
T Consensus 297 rG~A~l~~----~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 297 RGQALLAL----GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHhh----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999777 9999999999999999999999999999988887776655 788888886654
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=4.8e-11 Score=87.86 Aligned_cols=130 Identities=22% Similarity=0.125 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
...|...+.++++.+|++.++|+..-.+.+...+++.|...+.++....| ...+|+..+++. +.+++.
T Consensus 600 v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg--------TeRv~mKs~~~e----r~ld~~ 667 (913)
T KOG0495|consen 600 VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG--------TERVWMKSANLE----RYLDNV 667 (913)
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC--------cchhhHHHhHHH----HHhhhH
Confidence 45677777788888888888888888888888888888888888877654 455666666666 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
++|+.+++++++..|+....|.++|.++..+++.+.|...|...++..|..+..|..|.+|.
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.1e-12 Score=87.96 Aligned_cols=137 Identities=14% Similarity=0.090 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchh-----------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEK----------------------- 86 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----------------------- 86 (172)
++.|+..|.+.++..|.+...+..++.++-.++++++|.+.|+.+++.+|.+.....
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777663222111
Q ss_pred ----hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 87 ----EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD---DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
..+..++++|.+.+. .+++|-++..|++++..-. ...++|+++|.+....|++.-|...|+-++..+|+
T Consensus 352 qmG~~speLf~NigLCC~y----aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 352 QMGAQSPELFCNIGLCCLY----AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HhcCCChHHHhhHHHHHHh----hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 122233333433322 2777777777777776532 23577888888888888888888888888888888
Q ss_pred cHHHHHHHHhh
Q 039398 160 WTDAQAALDRL 170 (172)
Q Consensus 160 ~~~~~~~l~~l 170 (172)
+.+++..|.-|
T Consensus 428 h~ealnNLavL 438 (478)
T KOG1129|consen 428 HGEALNNLAVL 438 (478)
T ss_pred hHHHHHhHHHH
Confidence 87777666543
No 93
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.38 E-value=4.8e-11 Score=71.37 Aligned_cols=100 Identities=26% Similarity=0.176 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC--
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD-- 125 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-- 125 (172)
+.+++.+|.++-..|+.++|+..|++++.... .......++..+|..+ +.+|++++|+..+++++...|+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL----~~~~~~~a~i~lastl----r~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGL----SGADRRRALIQLASTL----RNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHCCCcc
Confidence 35789999999999999999999999998654 2235566788888888 5559999999999999999898
Q ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 126 -NVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 126 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+......++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778889999999999999999999988775
No 94
>PRK15331 chaperone protein SicA; Provisional
Probab=99.37 E-value=2.5e-11 Score=75.41 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred HHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 039398 39 KAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTE 118 (172)
Q Consensus 39 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (172)
.+..+.++.-+..+..|.-++..|++++|...|+-....+| .....++.+|-++ +.+++|++|+..|..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-------~n~~Y~~GLaa~~----Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-------YNPDYTMGLAAVC----QLKKQFQKACDLYAV 96 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------CcHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 44555667788899999999999999999999999999887 4555677888777 444999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 119 AVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
+..++++++...+..|.|+..+|+.+.|...|+.++. .|.+....
T Consensus 97 A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 97 AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999999999999999999998 56665543
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=85.79 Aligned_cols=122 Identities=17% Similarity=0.140 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|.+.|++++..+.+..++++++|.++..+|+.++|+++|-+.-.+ ..+.+.+++.++++|..+ .+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-------l~nn~evl~qianiye~l----ed~ 574 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------LLNNAEVLVQIANIYELL----EDP 574 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHh----hCH
Confidence 556666666666666666666666666666666666666665554332 124455555555555333 556
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.+|++++.++..+-|+++.++..+|.+|-..|+-.+|.+++-......|.+.+
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie 627 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE 627 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH
Confidence 66666666666666666666666666666666666666665555555555544
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=5.3e-11 Score=78.60 Aligned_cols=113 Identities=18% Similarity=0.044 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+..|+..+.++....|+++.+|..+|.+|.+.|++++|...|.+++++.| ....+..++|..+. -.|++
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-------~~p~~~nNlgms~~----L~gd~ 184 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-------NEPSIANNLGMSLL----LRGDL 184 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-------CCchhhhhHHHHHH----HcCCH
Confidence 99999999999999999999999999999999999999999999999998 55555666666653 33999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
+.|..++..+....+.+..+..+++.+....|++++|...-.+-
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999998889999999999999999999998776543
No 97
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.8e-11 Score=89.50 Aligned_cols=124 Identities=23% Similarity=0.117 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcc--------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF--------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 100 (172)
+.+|+..|++++.+ +|.-+.++.++|.+|...|+|++|..++++++.+...... ..+..+..+..++..+
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~- 335 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL- 335 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-
Confidence 88888888888775 4555678999999999999999999999999976532111 3344555556666666
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQ--------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..++++++|+.++++++.+. |.-+....++|.+|..+|++++|.+.|++++.+.
T Consensus 336 ---~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 336 ---QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ---HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 44499999999999998762 2346789999999999999999999999999764
No 98
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.35 E-value=7.8e-12 Score=85.84 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+...|..|+.+|.|++|+.||.+++..+|..+..+.+.+.+|+ +++.+..|...|..++.++.....++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-----------k~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-----------KQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-----------HHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 5678999999999999999999999999844444444444433 33888999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhhC
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLVS 172 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 172 (172)
...|.+...+|...+|.+.++.++.+.|.+.+....++++++
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998888764
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=1.5e-10 Score=87.56 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=59.5
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQD-DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+...|+|.+|+.++..+....+ ++...|+.+|.||..+|.+++|+++|++++.+.|++.+++..|+.|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 4556999999999999887755 3467999999999999999999999999999999999998887765
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.35 E-value=4.2e-11 Score=71.96 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+..|..++...+ +++|+..|.+++..+|++ +.+++.+|.++...|++++|+..++.++...|..
T Consensus 5 ~~~~~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 72 (119)
T TIGR02795 5 YYDAALLVLKAGD-----------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS- 72 (119)
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-
Confidence 3445555555555 999999999999998876 6789999999999999999999999999887721
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 83 LTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
.....+++.+|.++. .++++++|+..+.+++...|++..+.
T Consensus 73 ---~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 73 ---PKAPDALLKLGMSLQ----ELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ---CcccHHHHHHHHHHH----HhCChHHHHHHHHHHHHHCcCChhHH
Confidence 223556778888874 44999999999999999999987643
No 101
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=5.5e-11 Score=87.15 Aligned_cols=128 Identities=19% Similarity=0.133 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|.+.+...+.+++..|..++.+-..|..+..+|+-++|....+.++..++ ....+|..+|-++ +.-++|
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-------~S~vCwHv~gl~~----R~dK~Y 91 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-------KSHVCWHVLGLLQ----RSDKKY 91 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-------ccchhHHHHHHHH----hhhhhH
Confidence 99999999999999999999999999999999999999999999999887 6777888888887 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+.+|+.|+...|+|..+|.-++....++++++.......+.+++.|....-|.+.+
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988887664
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=6.1e-11 Score=84.46 Aligned_cols=121 Identities=17% Similarity=0.025 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC-CCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI-PAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|+..+++++..+|++..++.. +..++..|++..+.....+++.. .| ..+.....+..+|.++ ..+|+
T Consensus 59 ~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~----~~~G~ 129 (355)
T cd05804 59 LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP----ENPDYWYLLGMLAFGL----EEAGQ 129 (355)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc----CCCCcHHHHHHHHHHH----HHcCC
Confidence 556666666666666666555443 44444443333333333333321 01 1112222333334444 33366
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+++|+..++++++.+|+++.++..+|.++...|++++|+..+.+++...|.
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 666666666666666666666666666666666666666666666666553
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.33 E-value=1.9e-11 Score=67.21 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=63.0
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
...+++++|+.++++++..+|+++..|..+|.++..+|++++|.+.|+++++..|+++.+......|
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 4559999999999999999999999999999999999999999999999999999999988777665
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.33 E-value=5.9e-12 Score=71.21 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=69.3
Q ss_pred HhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039398 60 LQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV 139 (172)
Q Consensus 60 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 139 (172)
..|+|+.|+..+++++..+|. .. ....++.+|.++ .++|+|++|+..+++ ...+|.++...+.+|.|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~----~~-~~~~~~~la~~~----~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT----NP-NSAYLYNLAQCY----FQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG----TH-HHHHHHHHHHHH----HHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC----Ch-hHHHHHHHHHHH----HHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999988762 11 444567788888 555999999999999 88888888999999999999
Q ss_pred ccCHHHHHHHHHHH
Q 039398 140 KKMRDEAKTAYESA 153 (172)
Q Consensus 140 ~~~~~~A~~~~~~a 153 (172)
+|++++|++.|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 105
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.31 E-value=2.1e-10 Score=76.64 Aligned_cols=113 Identities=21% Similarity=0.101 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN--- 126 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--- 126 (172)
-.|..|.-++..|+|.+|...|...++..| .....+.++|-+|.++ ..+|+|++|...|..+.+..|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP----~s~~~~nA~yWLGe~~----y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYP----NSTYTPNAYYWLGESL----YAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCcccchhHHHHHHHH----HhcccchHHHHHHHHHHHhCCCCCCC
Confidence 379999999999999999999999999888 3345667788888888 44499999999999999988765
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+++++.+|.+...+|+.++|...|+++++..|+...+...-.++
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999988776665
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.31 E-value=1.5e-10 Score=73.99 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYK---DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
+++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.+.|.....+...+.++..+|... ..+
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~----~~~ 126 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQA----IEQ 126 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHH----HHc
Confidence 99999999999988766 34589999999999999999999999999998865555555666666555544 233
Q ss_pred CCHH-------HHHHHHHHHHHhCCCCH
Q 039398 107 GRVD-------SAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 107 ~~~~-------~A~~~~~~~l~~~~~~~ 127 (172)
|+++ +|+.++++++..+|.+.
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 6665 66666667777887654
No 107
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.29 E-value=4.6e-11 Score=64.13 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
+.+|..++..|++++|+..|++++..+| ....+++.+|.++ ..+|++++|+..|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a~~~lg~~~----~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP-------DNPEAWYLLGRIL----YQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST-------THHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999999988 7888999999998 455999999999999999999875
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.8e-10 Score=82.11 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
|....+++..+..++..|++++|...++..+...| ++...+-..+.++ ...++.++|++.+++++.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-------~N~~~~~~~~~i~----~~~nk~~~A~e~~~kal~l~P 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-------DNPYYLELAGDIL----LEANKAKEAIERLKKALALDP 371 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHcCChHHHHHHHHHHHhcCC
Confidence 67888999999999999999999999999998877 5555555666666 444999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..+..+.++|.++.+.|++++|+..+.+.+..+|+++..|..|.+.
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=6.9e-11 Score=81.22 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=100.9
Q ss_pred cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 43 FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
.+|.+..-++.+|..++..|++..|+..|..+++.+| ..-.++|..+.+|.++ |+..-|+..+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-------~~Y~aifrRaT~yLAm----Gksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-------NNYQAIFRRATVYLAM----GKSKAALQDLSRVLEL 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHhhh----cCCccchhhHHHHHhc
Confidence 3566778899999999999999999999999999998 7778889999999877 9999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 123 QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
.|+...+....|.++.++|++++|...|..++..+|++...
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999999999999999976543
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.27 E-value=2.3e-10 Score=77.80 Aligned_cols=92 Identities=15% Similarity=0.045 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
|++|+..|+..+...|++ +.+++++|.+++..|++++|+..|++++...| .......+++.+|.++. .+
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP----~s~~~~dAl~klg~~~~----~~ 230 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP----KSPKAADAMFKVGVIMQ----DK 230 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCcchhHHHHHHHHHHH----Hc
Confidence 999999999999999997 58999999999999999999999999998777 33456778888898884 44
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
|++++|+..|++++...|++..+
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999998754
No 111
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.27 E-value=1.7e-11 Score=69.30 Aligned_cols=79 Identities=22% Similarity=0.166 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccCcc--cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 29 LAKQAEAEADKAISFDYK--DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
.+++|+..+++++..+|. +...++.+|.+++..|+|++|+..+++ ...+| ....+.+.+|.++ ..+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-------~~~~~~~l~a~~~----~~l 71 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-------SNPDIHYLLARCL----LKL 71 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-------CHHHHHHHHHHHH----HHT
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-------CCHHHHHHHHHHH----HHh
Confidence 399999999999999995 566788899999999999999999999 66544 4455666678877 445
Q ss_pred CCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEA 119 (172)
Q Consensus 107 ~~~~~A~~~~~~~ 119 (172)
|++++|+..|+++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999874
No 112
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.27 E-value=4.7e-10 Score=68.31 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.+..++..|...+..|+|++|++.|+.+....|... -...+...++..+ .+.+++++|+..+++-++++|++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----ya~qAqL~l~yay----y~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----YAEQAQLDLAYAY----YKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHH----HHccCHHHHHHHHHHHHHhCCCC
Confidence 467899999999999999999999999998777322 2334455666666 45599999999999999999987
Q ss_pred H---HHHHHHHHHHHHccC---------------HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 127 V---KALCLLGECYEVKKM---------------RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 127 ~---~~~~~l~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+ -+++..|.++..+.. ..+|...|++++...|++..+-.+-.+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 5 579999999999877 899999999999999999887766554
No 113
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.26 E-value=3.6e-10 Score=87.62 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++|+.++++++...|........+|.++...|++++|++.|+++++.+| ....++..++..+ ...++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-------~n~~~l~gLa~~y----~~~~q~ 152 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-------TNPDLISGMIMTQ----ADAGRG 152 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHH----hhcCCH
Confidence 78999999999944455555666668899999999999999999999998 4455555555555 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..++++...+|.+... ..++.++...++..+|++.|++++..+|++.++...+.
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999986554 55666666678887799999999999999998765543
No 114
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.26 E-value=8.5e-10 Score=81.52 Aligned_cols=149 Identities=15% Similarity=-0.037 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhcCCc----------hhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 7 FVIGAQLLAQARSSKSK----------SSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+-.+..++++++...+. .-..+..++|+.+++++++..|+.+..|..+|.++.++++.+.|...|...++
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 45667778888744332 12445588999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 77 IPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..| .....|..++.+.. +.|..-.|...+.++.-.||.+...|...-.+-...|+.++|...+.++++.
T Consensus 714 ~cP-------~~ipLWllLakleE----k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 714 KCP-------NSIPLWLLLAKLEE----KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred cCC-------CCchHHHHHHHHHH----HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998 55556677777773 4489999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHH
Q 039398 157 EPSWTDAQAA 166 (172)
Q Consensus 157 ~p~~~~~~~~ 166 (172)
.|++...|..
T Consensus 783 cp~sg~LWaE 792 (913)
T KOG0495|consen 783 CPSSGLLWAE 792 (913)
T ss_pred CCccchhHHH
Confidence 9999887743
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.26 E-value=3e-10 Score=64.89 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++...|.++.++..+|.++...+++++|+..++.++...| .....++.++.++... |++
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~ 84 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------DNAKAYYNLGLAYYKL----GKY 84 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cchhHHHHHHHHHHHH----HhH
Confidence 99999999999999999999999999999999999999999999999887 3335667777777444 999
Q ss_pred HHHHHHHHHHHHhCCC
Q 039398 110 DSAIDDLTEAVKIQDD 125 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~ 125 (172)
++|...+.+++..+|.
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999999988773
No 116
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=1.3e-09 Score=78.84 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch-----------------------
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE----------------------- 85 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~----------------------- 85 (172)
.+++|+..+++..+.+|+++.++..++.++...|++++|+..+....+..+......
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 389999999999999999999999999999999999999987777775443211100
Q ss_pred ------------hhhhHHHHHhhhHHHH-------------------------HHH--HhCCHHHHHHHHHHHHHhCCCC
Q 039398 86 ------------KEKGDALFKRAEVKMS-------------------------MNR--RAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~-------------------------~~~--~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
...+.+...++..+.. .+. ..++.++++..+++.++.+|++
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 0011111122222211 111 2378888899998899999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+..+..+|.++...+++++|.+.|+++++..|++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999999999999876
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.24 E-value=1.7e-09 Score=78.56 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.|...+.++.+..|+....+...|.+....|+++.|..++.++.+..|... ..+....+.++ ...|++
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~------l~~~~~~a~l~----l~~~~~ 169 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN------ILVEIARTRIL----LAQNEL 169 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc------hHHHHHHHHHH----HHCCCH
Confidence 99999999999999998888889999999999999999999999988766211 11222234444 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+.|...++..++..|+++.++..++.++...|++++|.+.+.+..+..+.++.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999977544433
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.24 E-value=3.9e-10 Score=86.41 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
...|+..|-++++++|.-+.++..+|.+|...-+...|..+|+++.++|+.....+...+..+.....+..+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 667888888888888888888888888888888888888888888888884443333333333222222111
Q ss_pred -----------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 102 -----------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 102 -----------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.|.+.++...|+..|+.+++.+|.+...|..+|.+|...|++.-|.+.|.++..++|.+..+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 124448999999999999999999999999999999999999999999999999999988766
Q ss_pred HHH
Q 039398 165 AAL 167 (172)
Q Consensus 165 ~~l 167 (172)
...
T Consensus 634 fk~ 636 (1238)
T KOG1127|consen 634 FKE 636 (1238)
T ss_pred HHH
Confidence 544
No 119
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.2e-09 Score=75.58 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH------
Q 039398 29 LAKQAEAEADKAISFDYKDA-AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS------ 101 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------ 101 (172)
.|..|+..++-....+.... ..-.++|.|++.+|+|++|...|.-+...+......+...+.+.|.+|.+..+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 37778888777666554433 56677888888888888888888888875544444566677777777766553
Q ss_pred -------------------------------------------H-HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 102 -------------------------------------------M-NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 102 -------------------------------------------~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
+ |.+ -.|++||+.|++++.-+|+....-..++.||
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR-MHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 2 444 7899999999999999999988889999999
Q ss_pred HHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 138 EVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 138 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.++.-++-+.+.+.-.++..|+++.+...+.
T Consensus 196 yKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999998776543
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.23 E-value=5.7e-10 Score=79.63 Aligned_cols=110 Identities=20% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.|++.+++..+.+|+ +...++.++...++-.+|+..+.+++...| .....+...+.++. ..+++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-------~d~~LL~~Qa~fLl----~k~~~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENP-------QDSELLNLQAEFLL----SKKKY 250 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----hcCCH
Confidence 89999999999988875 567789999999999999999999998777 44666677777774 44999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
+.|+...++++...|.+...|+.|+.+|..+|+++.|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999877644
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=8e-10 Score=70.95 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH---H
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM---N 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 103 (172)
+++|+.+|++++...|+. +.++..+|.++...|++++|+..+++++...|.....+...+.++..+|....+. -
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHH
Confidence 999999999999887653 5689999999999999999999999999998854444444444444444433221 0
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.....+++|++++++++..+|++
T Consensus 131 ~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 131 EAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhhCchh
Confidence 01122566777777777777776
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.8e-09 Score=76.13 Aligned_cols=131 Identities=19% Similarity=0.071 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
..+|++++-++..+-|++|.++..+|.+|-+.|+-..|..++-.....-| ......--+|.+| ....-+
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-------~nie~iewl~ayy----idtqf~ 642 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-------CNIETIEWLAAYY----IDTQFS 642 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-------cchHHHHHHHHHH----HhhHHH
Confidence 55666666666666666666666666666666666666666655555444 2222222233333 333667
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
++|+.+|+++--+.|+......+++.|+...|+|..|...|+......|.+.+....|.++.
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998887764
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=86.09 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
...|.++..+++..++++|-.+..|+.+|.+..+.++++.|..+|..++.++| +...+|.+++..+..+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-------d~~eaWnNls~ayi~~---- 566 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-------DNAEAWNNLSTAYIRL---- 566 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-------CchhhhhhhhHHHHHH----
Confidence 45599999999999999999999999999999999999999999999999999 6666676666666444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
++-.+|...+++++..+-+++.+|.|.-.+....|++++|++.|.+.+.+.-
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 8899999999999999999999999999999999999999999999886643
No 124
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=9.1e-10 Score=78.47 Aligned_cols=115 Identities=16% Similarity=0.033 Sum_probs=94.2
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHH
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSA 112 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 112 (172)
+...+......+|.....+..+|.++...|++++|+..+++++.+.| ....++..+|.++ ...|++++|
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-------~~~~~~~~la~i~----~~~g~~~eA 167 (355)
T cd05804 99 VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-------DDAWAVHAVAHVL----EMQGRFKEG 167 (355)
T ss_pred HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCcHHHHHHHHHH----HHcCCHHHH
Confidence 33333334456777888888999999999999999999999999998 4455666777777 444999999
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 113 IDDLTEAVKIQDDNV----KALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 113 ~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
+.++.+++...|.++ ..+..+|.++...|++++|...|++++...|
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999877543 3466899999999999999999999987776
No 125
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=3.3e-09 Score=78.43 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=56.2
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
|...|++++|++++++++...|+.++.++..|.++...|++.+|.+.+..+..+|+.|..
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 355699999999999999999999999999999999999999999999999999997654
No 126
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.15 E-value=9.4e-09 Score=74.46 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHH-HHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILK-ALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|...+.+.....+ ++...+.+ +......|+++.|..++.++.+.+|+.. .......+.++ ...|+
T Consensus 100 ~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~------~~~~l~~a~l~----l~~g~ 168 (398)
T PRK10747 100 YQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ------LPVEITRVRIQ----LARNE 168 (398)
T ss_pred HHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch------HHHHHHHHHHH----HHCCC
Confidence 7788877766544433 35555555 5666999999999999999998877211 11112224444 44499
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+++|...+++..+.+|+++.++..++.+|...|++++|.+.+.+..+..+.++.
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999999999888877766544
No 127
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=9.1e-10 Score=80.72 Aligned_cols=124 Identities=21% Similarity=0.166 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcc--------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF--------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 100 (172)
|++|+..++.+++. .|.-......+|..|...+++.+|+..|++++.+-.... ...+..+.++.+++..|
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly- 293 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY- 293 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-
Confidence 99999999999887 555555666699999999999999999999996532111 24557777888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQ--------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
.+.|++++|..++++++.+. |.-...+.+++.++..++++++|..++++++++.
T Consensus 294 ---~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 294 ---YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred ---hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 55599999999999998873 3335678899999999999999999999998764
No 128
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.12 E-value=8.3e-10 Score=69.44 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.++.|.+.++.....+|.+++.+++=|..+..+.++... ... ..-
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g-------------------~es----------------~~m 50 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQG-------------------PES----------------KKM 50 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-H-------------------HHH----------------HHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCc-------------------chH----------------HHH
Confidence 377888888888888888888888888777665332110 000 034
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM-----------RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++|+.-|++++.++|+..++++++|.++...+. |++|..+|+++...+|++...+..|..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6889999999999999999999999999988765 889999999999999999988877754
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=6e-10 Score=82.85 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
..+...+|......++|+++..+++..+.++| .....||..|.+...+ ++++.|...|..++..+|++.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~np-------lq~~~wf~~G~~ALql----ek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINP-------LQLGTWFGLGCAALQL----EKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCc-------cchhHHHhccHHHHHH----hhhHHHHHHHHHHhhcCCCch
Confidence 33555555556667889999999999999887 6777788888888655 889999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
++|.+++..|...|+-.+|...++++++.+-.++..|..
T Consensus 554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence 999999999999999999999999999888776666543
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.12 E-value=3.1e-09 Score=82.38 Aligned_cols=120 Identities=16% Similarity=0.041 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc------------cchhhhhHHHHHhhh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT------------LTEKEKGDALFKRAE 97 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~ 97 (172)
+++|+...+.+++..|+...+++..|.+++..+++.++.-. .++..-+... ......-.+++.+|.
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~ 124 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAE 124 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 89999999999999999999999999999999999988877 6665544222 011222346667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 98 VKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+| .++|++++|...++++++.+|+++.++.++|..+... +.++|.+++.+|+..
T Consensus 125 ~Y----dk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 125 AY----AKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HH----HHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 66 6669999999999999999999999999999999999 999999999999855
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.5e-08 Score=69.23 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+| ...+.+.- .+..+|..+|+.
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~------~yl~evl~----~L~~~Y~~lg~~ 265 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP------EYLSEVLE----MLYECYAQLGKP 265 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh------HHHHHHHH----HHHHHHHHhCCH
Confidence 77788888888888888888888888888888888888888888887665 12222222 333344566888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
++.+.++.++.+.+++ +.+...++..-....-.+.|..++.+-+...|+-.-.+
T Consensus 266 ~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 266 AEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 8888888888877765 45556666666666667777777777777777654433
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.11 E-value=3e-09 Score=70.05 Aligned_cols=113 Identities=23% Similarity=0.174 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
++..++..|..++..|+|.+|+..|+.++...|. ......+.+.+|..+ .+.|++++|+..+++.+...|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~----y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAY----YKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHCCCC
Confidence 5678999999999999999999999999987763 234455667777777 55599999999999999999987
Q ss_pred H---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 127 V---KALCLLGECYEVKK-----------MRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 127 ~---~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+ .+++.+|.++..+. ...+|...|+..+...|+++.+....
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~ 130 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK 130 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH
Confidence 5 58899999876653 34589999999999999987655443
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=1.1e-08 Score=75.38 Aligned_cols=140 Identities=16% Similarity=0.053 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
|++|+.+|..|+..+|+|..+|.-++.+..++++++.....-.+.+++.|.....|...+.+.+..|....+
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888777788887777777777777775555565555555555544432
Q ss_pred -----------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 102 -----------------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 102 -----------------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
.....|.+++|.+.+..--..--+........|.++..++++++|...|...+..+|
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 112223444444433332221122233445568899999999999999999999999
Q ss_pred CcHHHHHHHHh
Q 039398 159 SWTDAQAALDR 169 (172)
Q Consensus 159 ~~~~~~~~l~~ 169 (172)
++..-+..+..
T Consensus 251 dn~~Yy~~l~~ 261 (700)
T KOG1156|consen 251 DNLDYYEGLEK 261 (700)
T ss_pred hhHHHHHHHHH
Confidence 99886666543
No 134
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.10 E-value=9.6e-09 Score=74.69 Aligned_cols=123 Identities=15% Similarity=-0.074 Sum_probs=95.7
Q ss_pred HHHHHHHHhccCc----ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 33 AEAEADKAISFDY----KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 33 A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+.+.+.++....| +++..+..+|..+...|++++|...++++++..|+...... ..+...+. ...++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~---~~l~~~~~------l~~~~ 314 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL---PLCLPIPR------LKPED 314 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh---HHHHHhhh------cCCCC
Confidence 3446667777777 58999999999999999999999999999998874322110 01111111 12277
Q ss_pred HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HHHccCCCcHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNV--KALCLLGECYEVKKMRDEAKTAYE--SALKIEPSWTDAQ 164 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~ 164 (172)
.+.++..++++++.+|+++ ..+..+|.++...|++++|.++|+ .+++.+|+.....
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 8899999999999999999 888899999999999999999999 6888889876633
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.2e-09 Score=73.36 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhH---------HH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEV---------KM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~ 100 (172)
+.-+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|.........+..+-..|.+ +.
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 555666777777888999999999999999999999999999999999982221111111111111111 11
Q ss_pred --------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 101 --------------SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 101 --------------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
......+++..|+.+-.++++.+|.+..++...|.++...|++++|+-.|+.+..+.|.+-+.+.+
T Consensus 294 ~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 294 AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 012333899999999999999999999999999999999999999999999999999999998888
Q ss_pred HH
Q 039398 167 LD 168 (172)
Q Consensus 167 l~ 168 (172)
|-
T Consensus 374 L~ 375 (564)
T KOG1174|consen 374 LF 375 (564)
T ss_pred HH
Confidence 74
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=1.5e-08 Score=68.49 Aligned_cols=114 Identities=8% Similarity=-0.029 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
.++..++..|...+..|+|++|+..|++++...|.. .....+.+.+|.++ .+.+++++|+..+++.++.+|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s----~~a~~a~l~la~ay----y~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG----PYSQQVQLDLIYAY----YKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHhCcC
Confidence 467789999999999999999999999999988832 23334456777777 5559999999999999999988
Q ss_pred CH---HHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 126 NV---KALCLLGECYEVKK---------------M---RDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 126 ~~---~~~~~l~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++ .+++.+|.++...+ + ..+|...|++.+...|+..-+...-
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~ 164 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT 164 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 74 57899998865544 1 3578899999999999987654443
No 137
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.07 E-value=3.8e-10 Score=62.80 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
|+-..++.++|.++..+|++++|+.+|++++.+........+..+.++.++|.++ ..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECY----YRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH----HHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhh
Confidence 5567889999999999999999999999999752111113344566777777777 4448888888888887765
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=7.9e-09 Score=80.19 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=95.3
Q ss_pred hccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH-------HHHhCCHHHHH
Q 039398 41 ISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM-------NRRAGRVDSAI 113 (172)
Q Consensus 41 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~ 113 (172)
...+|.+..++..+...+...+++++|+..++..+...|.....+...+..++..+...... .....++ .++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~v 102 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIV 102 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHH
Confidence 45679999999999999999999999999999999999844433333333333222211110 1111233 556
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 114 DDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++...+...+++..+++.+|.||-++|++++|...|+++++.+|+++.+...++-
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 66666666667777999999999999999999999999999999999998877653
No 139
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=6.2e-09 Score=71.97 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
.+.++......++..+++++.|...++.+-+++.+.. ...++..+..++.-.+.+.+|...|++.....|.
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~---------l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI---------LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH---------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH---------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 4677777788888889999999988888887765221 2223322222212224688888888887777777
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 126 NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++..+..++.++..+|++++|.+.+++++..+|.++++...+
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 888888888888888888888888888888888888765544
No 140
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.99 E-value=2e-09 Score=59.90 Aligned_cols=67 Identities=36% Similarity=0.479 Sum_probs=55.3
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ---D----DNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+..+.++..+|.++ ..+|++++|+.+|++++.+. + ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVY----RELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888 55599999999999999762 2 23567899999999999999999999999865
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=2.6e-09 Score=57.75 Aligned_cols=50 Identities=22% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+++|+..|++++..+|+++.+++.+|.+++..|++++|...+++++..+|
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999877
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=1.5e-07 Score=67.72 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
......+|....+++++++|.|+.++..+|.+....++++.|+..|++++.++| +.+.+++..|.+..-.
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-------n~A~~~~~~~~~~~~~--- 385 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-------DIASLYYYRALVHFHN--- 385 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-------ccHHHHHHHHHHHHHc---
Confidence 344478899999999999999999999999999999999999999999999999 7888888888776434
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKA-LCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
|+.++|++.++++++++|....+ ...+..-.+.-...++|+..|-+-.+...
T Consensus 386 -G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (458)
T PRK11906 386 -EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESES 438 (458)
T ss_pred -CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccccc
Confidence 99999999999999999987554 33344413344568899998877655443
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=98.99 E-value=1.9e-08 Score=62.70 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|...|.-....+|.+++.|+.+|.|+-.+++|++|+..|..+..+++ +.+...+..|.++..+ |+.
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------~dp~p~f~agqC~l~l----~~~ 121 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------NDYRPVFFTGQCQLLM----RKA 121 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------CCCCccchHHHHHHHh----CCH
Confidence 99999999999999999999999999999999999999999999998876 4444467777777555 999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 039398 110 DSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~ 126 (172)
+.|...|..++.. |.+
T Consensus 122 ~~A~~~f~~a~~~-~~~ 137 (165)
T PRK15331 122 AKARQCFELVNER-TED 137 (165)
T ss_pred HHHHHHHHHHHhC-cch
Confidence 9999999999883 553
No 144
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.3e-08 Score=65.99 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhh--------CCCCCCccchhhhh----HHHHHhhhHHHHHHHHhCCHHHHHHH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLAL--------SIPAVKTLTEKEKG----DALFKRAEVKMSMNRRAGRVDSAIDD 115 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~ 115 (172)
..++...|+-++..|+|.+|...|+.++ +-.|..+ .|.... ..+.++++++. ..|+|-+++++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllNy~QC~L----~~~e~yevleh 252 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLNYCQCLL----KKEEYYEVLEH 252 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHhHHHHHh----hHHHHHHHHHH
Confidence 4577888999999999999999999987 2223222 232222 22345555554 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 116 LTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 116 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+..++..+|.+.++++..|.++...-+..+|...|.++++++|.-..
T Consensus 253 ~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 253 CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999999999998654
No 145
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=3.1e-08 Score=66.41 Aligned_cols=96 Identities=20% Similarity=0.033 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
|..|...|..-++..|++ +.++|++|.+++.+|+|++|...|..+++-.| ..+.-+++++.+|.+... +
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~KApdallKlg~~~~~----l 228 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPKAPDALLKLGVSLGR----L 228 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHH----h
Confidence 899999999999999985 78999999999999999999999999998777 334556788999999844 4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
|+.++|-..|+++++..|+...+....
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999987765443
No 146
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.9e-08 Score=63.70 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhccCcccHH-----HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAA-----AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
.|++|..-|..++...|..+. .+.+.|.+++.++.++.|+....++|++.| ....++.+.+..|
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-------ty~kAl~RRAeay---- 178 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-------TYEKALERRAEAY---- 178 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-------hhHHHHHHHHHHH----
Confidence 399999999999999997543 678889999999999999999999999998 5555666667777
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.++..|++|++.|+++++.+|....+.-....
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 44499999999999999999987766554443
No 147
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.97 E-value=2e-08 Score=71.99 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=62.2
Q ss_pred cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhh---HHHHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 039398 43 FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKG---DALFKRAEVKMSMNRRAGRVDSAIDDLTEA 119 (172)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 119 (172)
.+|+++.+++++|..++..|+|++|+..|++++.++| +.. .+|+++|.++. .+|++++|+.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-------d~aeA~~A~yNLAcaya----~LGr~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-------NPDEAQAAYYNKACCHA----YREEGKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CchHHHHHHHHHHHHHH----HcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998 444 45889998884 449999999999999
Q ss_pred HHhC
Q 039398 120 VKIQ 123 (172)
Q Consensus 120 l~~~ 123 (172)
++..
T Consensus 139 Lels 142 (453)
T PLN03098 139 LRDY 142 (453)
T ss_pred HHhc
Confidence 9983
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=3.8e-08 Score=68.14 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQG--FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
++.|...++..-+.+++..-.....+++.+..| .+.+|...|+...+..+ .....+..++.+. ..+|
T Consensus 147 ~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~-------~t~~~lng~A~~~----l~~~ 215 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG-------STPKLLNGLAVCH----LQLG 215 (290)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---------SHHHHHHHHHHH----HHCT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC-------CCHHHHHHHHHHH----HHhC
Confidence 888999999998888887777777777777777 59999999999877644 3444555566666 4449
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHccCCCcHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMR-DEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~ 165 (172)
+|++|...+.+++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++....
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999998 6677788888889999887543
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.97 E-value=7.6e-09 Score=56.73 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=59.9
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 55 ALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
..++...+++++|+.++++++.++| .....++..|.++. .+|++++|+..++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~----~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLF----QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHH----HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 5678999999999999999999998 67777777888774 449999999999999999999888766554
Q ss_pred H
Q 039398 135 E 135 (172)
Q Consensus 135 ~ 135 (172)
.
T Consensus 71 ~ 71 (73)
T PF13371_consen 71 M 71 (73)
T ss_pred h
Confidence 3
No 150
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.96 E-value=2.7e-09 Score=52.46 Aligned_cols=44 Identities=30% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.++..+|.+|..+|++++|++.|+++++.+|+++.+|..|.++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35788889999999999999999999999999999988887654
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=5.1e-08 Score=66.36 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
|.++|+.+..-.+.+|.+...+..+|-||+...+|.+|..+|++.-.+.|.........+..+++-+....+
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998883322222222222222111110
Q ss_pred ----------------------------------------------H-HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 102 ----------------------------------------------M-NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 102 ----------------------------------------------~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
| ..+-|+|+.|+.-|+.+++...-++-.-++++
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 1 23337888888888888888777777788888
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 039398 135 ECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 135 ~~~~~~~~~~~A~~~~~~al 154 (172)
.+++..|++..|.++..+.+
T Consensus 186 LaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEII 205 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 88888888888877666555
No 152
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.95 E-value=7.2e-09 Score=71.61 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|++|+++|.+++..+|.|+..+.+++..|++...|..|...++.++.++. ....+|...+..-.++ |..
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-------~Y~KAYSRR~~AR~~L----g~~ 181 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-------LYVKAYSRRMQARESL----GNN 181 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-------HHHHHHHHHHHHHHHH----hhH
Confidence 99999999999999999999999999999999999999999999999875 5666777777776555 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.+|.+.++.+|++.|++.+..-.++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 99999999999999998765444433
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.94 E-value=3e-08 Score=68.64 Aligned_cols=126 Identities=22% Similarity=0.187 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhccC-----cc-cHHHHHHHHHHHHHh-CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFD-----YK-DAAAHILKALALDLQ-GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~-----p~-~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+++|+.+|++++.+. |. -..++..+|.+|... |++++|+++|++++.+-.... .......++...+.++
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~--- 165 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY--- 165 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH---
Confidence 677777777777652 22 255788899999998 999999999999996532111 2233445556667666
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDN------V-KALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
.++|+|++|++.|+++....-++ . ..++..+.|+...|++-.|...+++....+|..
T Consensus 166 -~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 166 -ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp -HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred -HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 55599999999999998753211 1 356778889999999999999999999999854
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.94 E-value=7.2e-09 Score=74.17 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=63.2
Q ss_pred chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 84 TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA---LCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+.....++++|..+.. +|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++.+++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788889999998844 499999999999999999999865 999999999999999999999999997
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.93 E-value=6.8e-08 Score=58.99 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+..|...+.... |++|++.|+.+....|.. ..+.+.++.+++..+++++|+..+++.|++.|
T Consensus 13 ly~~a~~~l~~~~-----------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP--- 78 (142)
T PF13512_consen 13 LYQEAQEALQKGN-----------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP--- 78 (142)
T ss_pred HHHHHHHHHHhCC-----------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---
Confidence 4445555555555 999999999999988864 67899999999999999999999999999999
Q ss_pred cchhhhhHHHHHhhhHHHHHH-----------HHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 83 LTEKEKGDALFKRAEVKMSMN-----------RRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
.++....+++..|..+.... +..+...+|...|+++++..|++.-+
T Consensus 79 -~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 79 -THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred -CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 44455666777776654320 11233789999999999999987643
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=1e-07 Score=57.15 Aligned_cols=98 Identities=20% Similarity=0.073 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
+|-.|+.+-...+ .++|+..|++++....+. ..+++.+|.++..+|++++|+..+++.+...|...
T Consensus 4 ~~~~A~a~d~~G~-----------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 4 LYELAWAHDSLGR-----------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 4555555555555 899999999999976544 56899999999999999999999999997655211
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 83 LTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
. .......++.+. ...|++++|+..+-.++..
T Consensus 73 ~----~~~l~~f~Al~L----~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 L----NAALRVFLALAL----YNLGRPKEALEWLLEALAE 104 (120)
T ss_pred c----cHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHH
Confidence 1 222222233333 4459999999999887753
No 157
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.88 E-value=3e-07 Score=61.29 Aligned_cols=137 Identities=18% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH----
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM---- 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 102 (172)
+++|+..|+.+....|.. ..+.+.++-.+++.+++++|+...++.+.+.| ..++...+++..|..+...
T Consensus 50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP----~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP----THPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC----CCCChhHHHHHHHHHHhccCCcc
Confidence 899999999999888765 56889999999999999999999999999998 4445555666666655421
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVK-----------------ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
.+.+.-..+|+..++..++..|++.- --..+|..|.+.|.+-.|+.-++.+++..|+...+..
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 12233456777788888888887621 1234577888888888888888888888777776666
Q ss_pred HHHhh
Q 039398 166 ALDRL 170 (172)
Q Consensus 166 ~l~~l 170 (172)
+|..+
T Consensus 206 aL~~l 210 (254)
T COG4105 206 ALARL 210 (254)
T ss_pred HHHHH
Confidence 66544
No 158
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1e-08 Score=66.52 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
-+..++.+|..|-..|-+.-|...|.+++.+.| ..+.++..+|-++..- |+|+.|.+.|...++++|.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P-------~m~~vfNyLG~Yl~~a----~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQA----GNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC-------CcHHHHHHHHHHHHhc----ccchHHHHHhhhHhccCCcc
Confidence 355788899999999999999999999999998 7888888888888554 99999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH--HHHHHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD--AQAALD 168 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~ 168 (172)
.-+..+.|..++.-|++.-|.+.+.+--+.+|.+|- .|.-|.
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999874 454443
No 159
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.86 E-value=2.3e-07 Score=55.56 Aligned_cols=99 Identities=31% Similarity=0.434 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN---- 126 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---- 126 (172)
+-..|......|+.+.|++.|.+++.+.| ..+.+|.+.++.+ +-+|+.++|++.+++++++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P-------~raSayNNRAQa~----RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAP-------ERASAYNNRAQAL----RLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcc-------cchHhhccHHHHH----HHcCChHHHHHHHHHHHHhcCccchHH
Confidence 34457888899999999999999999988 7777888888777 66699999999999999996443
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
..++...|.+|..+|+-+.|...|+.+-++....
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 3578899999999999999999999998775543
No 160
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.86 E-value=4.3e-08 Score=61.82 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGEC 136 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 136 (172)
..|++|..+|+++...+|++......|..+
T Consensus 94 ~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 94 EYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 447899999999999999987766555433
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=4.5e-07 Score=67.35 Aligned_cols=117 Identities=21% Similarity=0.054 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+++++++|...|..++.++..|.++...|++.+|...++.+-.+++ ..-.+....+.+. .+.|+.
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-------~DRyiNsK~aKy~----LRa~~~ 278 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-------ADRYINSKCAKYL----LRAGRI 278 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-------hhHHHHHHHHHHH----HHCCCH
Confidence 89999999999999999999999999999999999999999999999986 2222223333333 333999
Q ss_pred HHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQD--DN-------VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~--~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
++|...+..-.+.+. .. ......-|.+|...|++..|++.|..+.+..
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999998877765542 11 2233456899999999999999999887553
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=9.7e-08 Score=73.82 Aligned_cols=128 Identities=20% Similarity=0.046 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------------------------------------CChhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ------------------------------------GFKTSALESFDL 73 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------------------------------~~~~~A~~~~~~ 73 (172)
...|..+|.++.++||.+..++-..+.+|.+. +++..|+..++.
T Consensus 508 m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 508 MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 66788888888888887766666666555544 455555666666
Q ss_pred hhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 74 ALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
++..+| ..-.+|..+|..|..+ |+|..|++.|.++..++|.+.-..+..+.+...+|+|.+|+..+...
T Consensus 588 ALR~dP-------kD~n~W~gLGeAY~~s----Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 588 ALRTDP-------KDYNLWLGLGEAYPES----GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhcCCc-------hhHHHHHHHHHHHHhc----CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666666 6666777888888555 99999999999999999999999999999999999999999999999
Q ss_pred HccCCCcHHHHHHHH
Q 039398 154 LKIEPSWTDAQAALD 168 (172)
Q Consensus 154 l~~~p~~~~~~~~l~ 168 (172)
+........+..+|.
T Consensus 657 i~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLA 671 (1238)
T ss_pred HHHHHHHHHhhhhHH
Confidence 877766655555443
No 163
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.3e-07 Score=62.24 Aligned_cols=83 Identities=18% Similarity=0.026 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.|..|+..|.+++.++|..+.-+.+.+.|+++.++++.+....+++++++| +....++.+|.+.... ..
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-------N~vk~h~flg~~~l~s----~~ 93 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-------NLVKAHYFLGQWLLQS----KG 93 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-------HHHHHHHHHHHHHHhh----cc
Confidence 399999999999999999999999999999999999999999999999998 8888899999988555 99
Q ss_pred HHHHHHHHHHHHHh
Q 039398 109 VDSAIDDLTEAVKI 122 (172)
Q Consensus 109 ~~~A~~~~~~~l~~ 122 (172)
|++||..++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999655
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.76 E-value=1.1e-08 Score=47.15 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKT 148 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 148 (172)
+|+++++++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.76 E-value=2.7e-07 Score=63.93 Aligned_cols=104 Identities=21% Similarity=0.197 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh-CCHHHHHHHHHHHHHhCCC-
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA-GRVDSAIDDLTEAVKIQDD- 125 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~- 125 (172)
...+...+.++.. .++++|+.++++++.+-- .......-+.++..+|.++ ... |++++|+++|++++.....
T Consensus 75 a~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~-~~G~~~~aA~~~~~lA~~y----e~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 75 AKAYEEAANCYKK-GDPDEAIECYEKAIEIYR-EAGRFSQAAKCLKELAEIY----EEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHH----CCTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHC
Confidence 3455555666654 499999999999985421 0012234455666667666 665 8999999999999887322
Q ss_pred -C----HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 126 -N----VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 126 -~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
. ...+..+|.++...|+|++|++.|+++....
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 2 3567889999999999999999999998654
No 166
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.2e-08 Score=64.04 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+-..|..++...+|..|+.+|.++|.++|... ..+-+.+.+++ ++++++.+...+.+++++.|+...++
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~-------~Y~tnralchl----k~~~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVA-------SYYTNRALCHL----KLKHWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcc-------hhhhhHHHHHH----HhhhhhhhhhhHHHHHhcChHHHHHH
Confidence 34557788888999999999999999998433 33344444443 34999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+.+|.+......|++|+..++++..+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999644
No 167
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.75 E-value=1.9e-07 Score=58.25 Aligned_cols=79 Identities=23% Similarity=0.098 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
+++|+..|+.++...|+. +.+.+.+|.++...|++++|+..++... ..+ ..+..+..+|.++ ...
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~-------~~~~~~~~~Gdi~----~~~ 131 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEA-------FKALAAELLGDIY----LAQ 131 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Ccc-------hHHHHHHHHHHHH----HHC
Confidence 999999999999987664 4578889999999999999999997732 222 3455667788888 445
Q ss_pred CCHHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAV 120 (172)
Q Consensus 107 ~~~~~A~~~~~~~l 120 (172)
|++++|+..|++++
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999874
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=5.9e-07 Score=58.58 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+..-|...|.+++.+.|+-++++..+|..+...|+|+.|.+.|+.+++++|.......+.+.+++ .- |+
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y----------Y~-gR 148 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY----------YG-GR 148 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee----------ec-Cc
Confidence 36667788999999999999999999999999999999999999999999954444444443332 22 88
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~ 128 (172)
|+-|.+.+.+-.+.+|++|-
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hHhhHHHHHHHHhcCCCChH
Confidence 99999999999999998874
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.3e-07 Score=61.77 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-
Q 039398 64 KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM- 142 (172)
Q Consensus 64 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~- 142 (172)
.+.-+..++.-+..+| +.+.-|..+|.+++.. |+++.|...|.+++++.|++++.+..+|.++..+.+
T Consensus 138 ~~~l~a~Le~~L~~nP-------~d~egW~~Lg~~ym~~----~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 138 MEALIARLETHLQQNP-------GDAEGWDLLGRAYMAL----GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHh----cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 3445556666777776 6777788888888544 999999999999999999999999999998777654
Q ss_pred --HHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 143 --RDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 143 --~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
..++...+++++..+|.+..+...|.
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 56899999999999999999877664
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=6e-07 Score=64.46 Aligned_cols=103 Identities=23% Similarity=0.122 Sum_probs=88.2
Q ss_pred HHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 54 KALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
+-..+...++++.|+..+++..+.+| . +...++.++... ++..+|+..+.+++..+|.+...+...
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p-------e---v~~~LA~v~l~~----~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP-------E---VAVLLARVYLLM----NEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC-------c---HHHHHHHHHHhc----CcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34455567899999999999998776 2 234456665433 889999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 134 GECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 134 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+..+...++++.|+...+++..+.|++...|..|.++
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
No 171
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.72 E-value=1.2e-08 Score=47.03 Aligned_cols=34 Identities=26% Similarity=0.033 Sum_probs=31.3
Q ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCChhHHHH
Q 039398 36 EADKAISFDYKDAAAHILKALALDLQGFKTSALE 69 (172)
Q Consensus 36 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 69 (172)
+|+++++++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.71 E-value=2.1e-06 Score=54.80 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++..+....+.+...|. ..-.+.+|....+.|++.||..+|++++.- ........+..+++...++ +++
T Consensus 72 P~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG------~fA~d~a~lLglA~Aqfa~----~~~ 140 (251)
T COG4700 72 PERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSG------IFAHDAAMLLGLAQAQFAI----QEF 140 (251)
T ss_pred hhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------ccCCCHHHHHHHHHHHHhh----ccH
Confidence 44455555555555553 445677888888888888888888888752 1224445566677777555 888
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 110 DSAIDDLTEAVKIQDD--NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
..|...+++..+.+|. .++....+|.++...|.+.+|...|+.++...|+-
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 8888888888887764 56777888888888888888888888888877764
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.70 E-value=4.3e-08 Score=45.27 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999874
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.70 E-value=5.1e-06 Score=53.08 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAIS-FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+.+|...|++++. +..+++..+..++...+..+++..|...+++..+..|.. ..+.....+|+.+... |.
T Consensus 105 ~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-----r~pd~~Ll~aR~laa~----g~ 175 (251)
T COG4700 105 YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-----RSPDGHLLFARTLAAQ----GK 175 (251)
T ss_pred hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-----CCCCchHHHHHHHHhc----CC
Confidence 8899999999876 466789999999999999999999999999999887622 2333455667777444 99
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+.+|...|+.++...|+ +.+....+..+..+|+.+++..-+..+.
T Consensus 176 ~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 176 YADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred chhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999887 7888899999999998887776655443
No 175
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.9e-06 Score=51.76 Aligned_cols=89 Identities=25% Similarity=0.263 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.+.|++.|.+++.+.|..+.++.+++..+.-.|+.++|++.+++++++.... ......++...|.+| +.+|+-
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~---trtacqa~vQRg~ly----Rl~g~d 131 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ---TRTACQAFVQRGLLY----RLLGND 131 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHH----HHhCch
Confidence 8999999999999999999999999999999999999999999999987522 222344566677666 777999
Q ss_pred HHHHHHHHHHHHhCCC
Q 039398 110 DSAIDDLTEAVKIQDD 125 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~ 125 (172)
+.|...|..+-++.+.
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 9999999998887554
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.2e-06 Score=64.53 Aligned_cols=119 Identities=22% Similarity=0.153 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|++|+....+.+...|++.+++...-.++.+.++|++|+...+.-..... .....|..+.+. .+++..
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~--------~~~~~fEKAYc~----Yrlnk~ 95 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV--------INSFFFEKAYCE----YRLNKL 95 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh--------cchhhHHHHHHH----HHcccH
Confidence 99999999999999999999999999999999999999966555432111 111113444444 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
++|+..++ ..++.+.......|.+++++|+|++|...|+..++.+.++.+.
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99999998 5567777899999999999999999999999998888776554
No 177
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.68 E-value=4.3e-08 Score=70.23 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
.-..+...+..+.|+.|+..|.++|+++|.....+.+.+.++ .+.+++..|+..+.++++.+|....++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~-----------lK~e~~~~Al~Da~kaie~dP~~~K~Y 75 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAH-----------LKVESFGGALHDALKAIELDPTYIKAY 75 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhh-----------eeechhhhHHHHHHhhhhcCchhhhee
Confidence 345567777889999999999999999995555444444333 333889999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+..|.++...+++.+|...|+....+.|+++.+.+.+.+.
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999999999999999999999998887654
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=8.5e-07 Score=66.15 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcc--CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISF--DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
...+.....+++.. +|.++.++..+|......|++++|...+++++.++| . ..+|..+|.++... |
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-------s-~~a~~~lG~~~~~~----G 467 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-------S-WLNYVLLGKVYELK----G 467 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------C-HHHHHHHHHHHHHc----C
Confidence 56667777776664 778889999999999999999999999999999986 2 45778888888444 9
Q ss_pred CHHHHHHHHHHHHHhCCCCHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~ 128 (172)
++++|++.|.++++++|.++.
T Consensus 468 ~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999875
No 179
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.66 E-value=6.1e-08 Score=69.52 Aligned_cols=99 Identities=23% Similarity=0.183 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.|+..|.++++++|+++..+-+++..+...+++..|+..+.++++.+| ....+|+..|.+.+++ +++
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-------~~~K~Y~rrg~a~m~l----~~~ 88 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP-------TYIKAYVRRGTAVMAL----GEF 88 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc-------hhhheeeeccHHHHhH----HHH
Confidence 99999999999999999999999999999999999999999999999998 7777788888888555 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEV 139 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 139 (172)
.+|...|+......|+++.+...+-.|-..
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 999999999999999999998888776543
No 180
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.65 E-value=8.3e-08 Score=44.24 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
+.+|+.+|.++..+|++++|++.|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678889999999999999999999999998875
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=4.6e-06 Score=61.53 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc------------------------cch
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT------------------------LTE 85 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~------------------------~~~ 85 (172)
.++|+..++ ..++.+..+....|.+++++|+|++|...|+..++.+.... ...
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 677777776 45666777889999999999999999999999975543111 011
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHHHHHccCHHHHHHHH
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ--------DDN-------VKALCLLGECYEVKKMRDEAKTAY 150 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~ 150 (172)
...-..+|+.+-.+ ...|+|.+|++.+++++.+. .+. ..+...++.++..+|+.++|...|
T Consensus 172 e~syel~yN~Ac~~----i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 172 EDSYELLYNTACIL----IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cchHHHHHHHHHHH----HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11222334444444 33499999999999995541 111 235778899999999999999999
Q ss_pred HHHHccCCCcHH
Q 039398 151 ESALKIEPSWTD 162 (172)
Q Consensus 151 ~~al~~~p~~~~ 162 (172)
...++.+|.|..
T Consensus 248 ~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 248 VDIIKRNPADEP 259 (652)
T ss_pred HHHHHhcCCCch
Confidence 999999998764
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.4e-06 Score=57.37 Aligned_cols=127 Identities=13% Similarity=-0.023 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccC-cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFD-YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
|.-.++.+.+.++.+ |.++.....+|.+.++.|+.+.|..+++.+-+....- ........+..+.+.++ .-.++
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~a~i~----lg~nn 267 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNSAFLH----LGQNN 267 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhhhhhe----ecccc
Confidence 667788888888888 6788899999999999999999999999665321100 01111222223333333 33389
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+..|...+.+++..+|.++.+..+.+.|+...|+..+|++.++.++...|...
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999743
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.6e-06 Score=54.97 Aligned_cols=110 Identities=16% Similarity=0.050 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
++...--.++.++.+++-|...++++.+++. -..+..++..+..+..-.+++.+|.-+|+..-+..|..+.
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide---------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~ 208 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQIDE---------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPL 208 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChH
Confidence 3334444455555555555555555555542 1122223333333323336789999999999888888899
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.+...+.|+..+|++++|...++.++..++++++....+
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 999999999999999999999999999999998876544
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.55 E-value=2.9e-07 Score=45.12 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=36.3
Q ss_pred HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 90 DALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.+++.+|..+ ..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~----~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAY----RRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3566777777 44599999999999999999999999999985
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.52 E-value=2.7e-05 Score=55.04 Aligned_cols=133 Identities=20% Similarity=0.126 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--------------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-------------------------- 83 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------------------------- 83 (172)
+..|..-..+++...|.++........+|...|++.+......+.-+..--...
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 778888889999999999999999999999999999888777665532210000
Q ss_pred --chhhhhHHHHH---hhhHHHHHHHHhCCHHHHHHHHHHHHH-------------------------------hCCCCH
Q 039398 84 --TEKEKGDALFK---RAEVKMSMNRRAGRVDSAIDDLTEAVK-------------------------------IQDDNV 127 (172)
Q Consensus 84 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~l~-------------------------------~~~~~~ 127 (172)
.|.+.+...-. +.-.+...+-..|++++|.+...+++. ..|+++
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 01111111100 000011112344666666666655554 467888
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
..+..+|..+.+.+.+.+|..+|+.+++..|+..+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 89999999999999999999999999999998654
No 186
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.3e-06 Score=59.07 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.+..+-.-|+-|+..++|..|+..|.+.|...-. ...-.+..|.+.+.+..-+ |+|-.|+..+.+++..+|.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~---D~dlnavLY~NRAAa~~~l----~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA---DPDLNAVLYTNRAAAQLYL----GNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC---CccHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHhcCcch
Confidence 3455667799999999999999999999964321 2234566677777776544 99999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
..+++.=+.|+..+.++.+|+.+++..+.++-+...
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999999999998877655444
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.47 E-value=1.4e-05 Score=53.58 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.+..++..|....+.|+|++|+..|+.+....|..+. ...+...++..+ .+.+++++|+....+-+.+.|++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~----~~qa~l~l~yA~----Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY----SEQAQLDLAYAY----YKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc----cHHHHHHHHHHH----HhcccHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999999987773332 233344445444 45599999999999999999987
Q ss_pred HH---HHHHHHHHHHHcc--------CHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 127 VK---ALCLLGECYEVKK--------MRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 127 ~~---~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
++ +++..|.++...= -..+|...|+..+...|++.-+-..
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA 155 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA 155 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence 64 6777888766542 2568999999999999987654433
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=9.3e-05 Score=48.67 Aligned_cols=123 Identities=31% Similarity=0.346 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHH-HHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKAL-ALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+..++..+..++...+.+.......+. ++...|+++.|...+.+++...|. ...........+..+ ...++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~ 182 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALL----EALGR 182 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHH----HHhcC
Confidence 778899999999888877666666666 899999999999999999775541 012233333333333 33489
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 109 VDSAIDDLTEAVKIQDD-NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
++.++..+.+++...+. ....+..++.++...+.++.|...+..++...|..
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 99999999999999998 68999999999999999999999999999998873
No 189
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.47 E-value=3.4e-06 Score=59.10 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH-
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM- 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (172)
++++++.|+.+++...++ ..++..+|..+....++++|..+..++.++...... .+....|..+..+.+++
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l--~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL--KDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc--CchhHHHHHHHHHHHHHH
Confidence 999999999998875543 346788999999999999999999998866432221 11222233333333333
Q ss_pred HHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQ------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
++.+|+..+|.++++++.++. +.....+..+|.+|...|+.+.|..-|+.+...-
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 477899999999999997762 2335567889999999999999999999988654
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.45 E-value=3e-07 Score=65.23 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=85.4
Q ss_pred hhhhhHHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhh
Q 039398 24 SSASSLAKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAE 97 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (172)
....+.++.|+++|..-+++-.. ...++-++|.+|+.+|+|+.|+..-+.-+.+..... .....-.++.++|+
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG-DrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG-DRAAERRAHSNLGN 243 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh-hHHHHHHhhcccch
Confidence 34566688888888776665432 345778888899999999999888777765542111 12223445667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 98 VKMSMNRRAGRVDSAIDDLTEAVKIQ----DDN--VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
++.-+ |+++.|+++|+..+.+. ... +...+.+|..|.-..+++.|+.+..+-+.+
T Consensus 244 ~hifl----g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 244 CHIFL----GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred hhhhh----cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77444 88888888887765442 221 345677778888888888888877776654
No 191
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.40 E-value=1.9e-05 Score=58.55 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
..+.|.+.+.......|+.+-..+..|.++...|+.++|++.+++++.... ....-...+++.++.++... .+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~---~~~Ql~~l~~~El~w~~~~~----~~ 320 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS---EWKQLHHLCYFELAWCHMFQ----HD 320 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh---hHHhHHHHHHHHHHHHHHHH----ch
Confidence 378899999999999999999999999999999999999999999985332 11122344567788777555 99
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCH-------HHHHHHHHHHHccC
Q 039398 109 VDSAIDDLTEAVKIQDDN-VKALCLLGECYEVKKMR-------DEAKTAYESALKIE 157 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~ 157 (172)
|++|..++.+..+.+.-+ .-..+..|.|+...|+. ++|.+.|.++-.+.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999875443 34456678899999999 88888888876443
No 192
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.37 E-value=6.4e-07 Score=41.24 Aligned_cols=32 Identities=28% Similarity=0.106 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 46899999999999999999999999999887
No 193
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.4e-05 Score=55.59 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC-CCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI-PAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+.+|....++.+...|.+.-++..--..++.+|+...-...+++.+.. +| +.+..-|.-|.+...+ ...|-
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-------dlp~~sYv~GmyaFgL-~E~g~ 190 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-------DLPCYSYVHGMYAFGL-EECGI 190 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-------CCcHHHHHHHHHHhhH-HHhcc
Confidence 455666677888888888888877778888888888888888888854 44 2211112223222222 44599
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
|++|.+.-.+++++||.+..+....+.++...|+++++.+++.+.
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999999999999999999999999988764
No 194
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2.3e-05 Score=51.82 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccCcccHH------HHHHHHHHHHHh-CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAA------AHILKALALDLQ-GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+.+|++.+++++++..+-.. -+..+|.+|-.. .+++.|+.+|+++-+.-.... ....--.++...+.+...+
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHHHHHH
Confidence 55666666666666544322 234667777654 788899999998875432110 1111223345555555333
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNV-------KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
++|.+|+..|+++....-++. +.++.-|.|+....+.-.+...+++...++|....
T Consensus 168 ----eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 ----EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred ----HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 999999999999877654443 34566788999889999999999999999997554
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=5e-05 Score=58.76 Aligned_cols=123 Identities=22% Similarity=0.125 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..+.+|+....+.++..|+.+.+....|.++.++|+.++|..+++..-.+.+. .-..+-.+ ..+|+.++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-------D~~tLq~l----~~~y~d~~ 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-------DDLTLQFL----QNVYRDLG 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-------chHHHHHH----HHHHHHHh
Confidence 34999999999999999999999999999999999999999777766555442 22222222 33447779
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
++++|..+|+++++.+|+ -+.+..+-.+|.+.+.|.+=.+.--+.-+.-|.++.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 999999999999999999 888888888888888876544444344445566543
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.34 E-value=2.6e-06 Score=60.66 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 29 LAKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
.|++|+..-+.-+.+... .-.++.++|.++.-+|+++.|+++|+..+.+.-. .......+...|.+|+.|.-.
T Consensus 210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-lg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-LGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-hcchhHHHHHHHHhhhHHHHH
Confidence 378888877666655432 2458899999999999999999999998744210 002234566678899998555
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQD------DNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+++++||.++++-+.+.. ....++..+|..+...|..++|+.+.+..+++
T Consensus 289 ----~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 289 ----KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999877632 33568889999999999999999988877754
No 197
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.33 E-value=1.1e-06 Score=40.35 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
.+|+.+|.++..+|++++|...|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578888999999999999999999998888853
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.32 E-value=1.1e-06 Score=40.32 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+.+++.+|.+++..|++++|+.+|++++.++|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46899999999999999999999999999887
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00011 Score=50.30 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHH-hhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFK-RAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 108 (172)
+.+|...|..++...|.+.++...++.++...|+.+.|...+...=.-.. ...+.. .+.+. ++.+...
T Consensus 150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~---------~~~~~~l~a~i~--ll~qaa~ 218 (304)
T COG3118 150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ---------DKAAHGLQAQIE--LLEQAAA 218 (304)
T ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch---------hhHHHHHHHHHH--HHHHHhc
Confidence 88999999999999999999999999999999999999988876532211 111111 11111 1111122
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
..+. ..+.+.+..+|++..+.+.++..+...|+.++|.+.+-..++.+-+
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2222 3356667889999999999999999999999999999888877643
No 200
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.25 E-value=3.5e-05 Score=60.05 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
...|+++.|...+++.+...|++...+..++.+|...|++++|.+.++...+
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4447778888888877777787777777788888888888888887776553
No 201
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=0.0003 Score=45.38 Aligned_cols=103 Identities=24% Similarity=0.167 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
+-..++..+...|++++|+..++.++.... .......+-.+++++.... |.+++|+..+...-...- .+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~----~k~D~AL~~L~t~~~~~w-~~~~ 161 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQ----KKADAALKTLDTIKEESW-AAIV 161 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHh----hhHHHHHHHHhccccccH-HHHH
Confidence 345678889999999999999999996433 2223444457788887444 999999998866422211 1334
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
....|.++...|+-++|...|++++..+++..
T Consensus 162 ~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 162 AELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 67789999999999999999999999985543
No 202
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.20 E-value=0.00026 Score=57.44 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccC-cccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 30 AKQAEAEADKAISFD-YKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+++|.+.|+...+.+ +.++..|..+...|.+.|++++|+..|.....
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455555555554443 23444555555555555666666666555553
No 203
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.19 E-value=9.6e-07 Score=61.07 Aligned_cols=96 Identities=23% Similarity=0.182 Sum_probs=83.6
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCL 132 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 132 (172)
..+.-.+..|.++.|++.+..+|.++| ..+..+-..+.++ .++++...|+..|..++.++|+....+-.
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp-------~~a~l~~kr~sv~----lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNP-------PLAILYAKRASVF----LKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCC-------chhhhccccccee----eeccCCchhhhhhhhhhccCcccccccch
Confidence 345566778999999999999999998 6666666677666 44499999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 133 LGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 133 l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.|.....+|++++|...+..+.+++-+
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999988754
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.18 E-value=0.00039 Score=43.33 Aligned_cols=103 Identities=22% Similarity=0.148 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc------chhhhhHHH-----HHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTL------TEKEKGDAL-----FKRAEVKMSMNRRAGRVDSAIDDLTEAV 120 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l 120 (172)
...|......++.+.++..+.+++.+-..... .|....... ..........+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33455556677888888888888866532211 122211111 1111111122355699999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..+|.+..++..+-.++...|+..+|.+.|++..
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875
No 205
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.1e-05 Score=49.99 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
...+.+++.|+...|+|-+++++....+...| ....++|..|....+. =+.++|...|.++++++|.-.
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~-------~nvKA~frRakAhaa~----Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-------GNVKAYFRRAKAHAAV----WNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhcChhhH
Confidence 44788899999999999999999999999888 8888999999988766 678999999999999999765
Q ss_pred HHH
Q 039398 128 KAL 130 (172)
Q Consensus 128 ~~~ 130 (172)
.+.
T Consensus 299 svV 301 (329)
T KOG0545|consen 299 SVV 301 (329)
T ss_pred HHH
Confidence 543
No 206
>PLN03077 Protein ECB2; Provisional
Probab=98.15 E-value=0.00029 Score=56.33 Aligned_cols=107 Identities=15% Similarity=0.036 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC--CCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI--PAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
.++|...|+.. +.+..+|..+...|...|+.++|+..|++..+. .|+.. .+.....++ ...|
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~-----------~~~g 603 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCAC-----------SRSG 603 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHH-----------hhcC
Confidence 67777777765 456778888888888999999999999888753 23111 111111111 2225
Q ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQD--DNVKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
.+++|..+|+......+ .+...+..+..++.+.|++++|.+.+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555555542211 1234445555555555555555555544
No 207
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=9.7e-05 Score=53.98 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh-CCCCCCcc-chhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL-SIPAVKTL-TEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..-+....+.++....+.+.+.+..+..++..|++..|++.+...= .-.|.... ........|.++|-+...+ +
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~----~ 297 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL----G 297 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh----h
Confidence 4445555566677777889999999999999999999999876542 22221111 1222344456777766444 8
Q ss_pred CHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 108 RVDSAIDDLTEAVKI---------QD---------DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~---------~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.|.-++.+|.++++. .| ...+++++.|..+...|++-.|.+.|.++....-.+|..|..|++
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999861 11 245789999999999999999999999999999999999988865
No 208
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.15 E-value=0.0004 Score=56.44 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCcc-cHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 30 AKQAEAEADKAISFDYK-DAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.++|...|++....... +...|..+...|.+.|++++|+..|.....
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56666666666554322 456666666777777777777777776653
No 209
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.14 E-value=0.0001 Score=57.54 Aligned_cols=132 Identities=16% Similarity=0.079 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCC--CCCccchhhhhHHHHHhhhH---------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIP--AVKTLTEKEKGDALFKRAEV--------- 98 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~--------- 98 (172)
+++|...|++..+ | +..+|..+...|...|+.++|++.|++..... |+.. .+.....++...|.+
T Consensus 376 ~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 376 MEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7888888887654 2 45678888888888888888888888876432 2100 111111111111100
Q ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 99 ----------------KMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 99 ----------------~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
....+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.+.++|++..
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 011234557777777776653 2223 3556777777788888888888888888888887655
Q ss_pred HHHHH
Q 039398 163 AQAAL 167 (172)
Q Consensus 163 ~~~~l 167 (172)
.+..|
T Consensus 530 ~y~~L 534 (697)
T PLN03081 530 NYVVL 534 (697)
T ss_pred chHHH
Confidence 44444
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00015 Score=50.25 Aligned_cols=128 Identities=12% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ-GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.+.|-..|.++....+....+|...|.+.+.. ++.+.|...|+.+++.-| .....|.....++ ...++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-------~~~~~~~~Y~~~l----~~~~d 85 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-------SDPDFWLEYLDFL----IKLND 85 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-------T-HHHHHHHHHHH----HHTT-
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH----HHhCc
Confidence 77888999999877777889999999997774 555569999999998655 5555565555555 34499
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNV---KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.+.+...|++++..-|... .+|......-..-|+.+...+..+++....|++........
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999998866544 57888888888899999999999999999998776655443
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.12 E-value=1.3e-05 Score=40.59 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.++.+|..+.++|+|++|..+...+++.+|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4577888888999999999999999999999988877665543
No 212
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.12 E-value=0.00075 Score=44.28 Aligned_cols=127 Identities=24% Similarity=0.243 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhc--cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAIS--FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+..++..+...+. ..+.....+...+......+++..++..+..++...+.. .....+...+ ++ ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~----~~~~ 144 (291)
T COG0457 75 LEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-----DLAEALLALG-AL----YELG 144 (291)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-----chHHHHHHHH-HH----HHcC
Confidence 6777777777776 678888899999999999999999999999999876632 1111111111 22 4559
Q ss_pred CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-cHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQD---DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS-WTDAQAA 166 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 166 (172)
+++.|+..+.+++...| .........+..+...++++.+...+.+++...|. ....+..
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 99999999999988776 35566777777788899999999999999999988 3444433
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.00047 Score=50.44 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..+..|-..+++++..+..+...|...+.+-++......|...+.+++.+-| .....|+..-.....+ |
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-------RVdqlWyKY~ymEE~L----g 155 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-------RVDQLWYKYIYMEEML----G 155 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHh----c
Confidence 3488899999999999999999999999999999999999999999998877 4444555544444322 6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+...|...|.+-+.-.|+ ..+|...-..-..-++.+.|...|++-+-.+|+
T Consensus 156 Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 666666666666666554 345554444444455555555555555555543
No 214
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.00033 Score=51.21 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=56.9
Q ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--chhhhhHHHHHhhhHHHHHHHHhCCHHHHH
Q 039398 36 EADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL--TEKEKGDALFKRAEVKMSMNRRAGRVDSAI 113 (172)
Q Consensus 36 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 113 (172)
.|++.++.+|.|.++|+..-.+....|+-+.-.+.|+++|...|.... .|......|.+.+.+.. ....+.+.+.
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE---le~ed~ertr 386 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE---LEAEDVERTR 386 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHH
Confidence 367778889999999999988888889999999999999977663222 33334444444332221 1124555555
Q ss_pred HHHHHHHHhCCC
Q 039398 114 DDLTEAVKIQDD 125 (172)
Q Consensus 114 ~~~~~~l~~~~~ 125 (172)
+.|+.++.+-|+
T Consensus 387 ~vyq~~l~lIPH 398 (677)
T KOG1915|consen 387 QVYQACLDLIPH 398 (677)
T ss_pred HHHHHHHhhcCc
Confidence 555555555554
No 215
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.10 E-value=4.5e-06 Score=57.85 Aligned_cols=84 Identities=23% Similarity=0.109 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.|++.|..++.++|.....+..++.++..+++...|+..+..++.++|+....+...+.+. +.+|++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-----------rllg~~ 198 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-----------RLLGNW 198 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH-----------HHhhch
Confidence 899999999999999999999999999999999999999999999999985554433333333 333889
Q ss_pred HHHHHHHHHHHHhCC
Q 039398 110 DSAIDDLTEAVKIQD 124 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~ 124 (172)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999888754
No 216
>PRK10941 hypothetical protein; Provisional
Probab=98.09 E-value=9.3e-05 Score=50.77 Aligned_cols=70 Identities=7% Similarity=0.016 Sum_probs=62.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..+.+.++++.|+.+.+..+...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3456679999999999999999999999999999999999999999999999999999999876544433
No 217
>PLN03077 Protein ECB2; Provisional
Probab=98.09 E-value=0.0001 Score=58.88 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhccCcc--cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYK--DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
.++|..+|+......+- +...+..+...+.+.|++++|.+.+++. ...| ...+|..+-..+ ...+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p--------d~~~~~aLl~ac----~~~~ 671 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP--------DPAVWGALLNAC----RIHR 671 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC--------CHHHHHHHHHHH----HHcC
Confidence 45555555554422111 2344555555666666666666665554 1222 111221111111 3336
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+.+.+....+++++++|+++..+..++.+|...|++++|.+..+...
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777665543
No 218
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.08 E-value=0.00018 Score=58.39 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=99.8
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC-CCCCCccchhhhhHHHHHhhhHHH-----------
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS-IPAVKTLTEKEKGDALFKRAEVKM----------- 100 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~----------- 100 (172)
..+.|++.+.-+|+....|...-.-+.+.++.++|.+..++++. +++.......+...+++++-+.+.
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999994 444333333333344444433332
Q ss_pred ---------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 101 ---------------SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 101 ---------------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.+|.+.+.+++|.++++..+....+....|..+|..+....+-+.|...+.+|++.-|.
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 14677788999999999999988888889999999998888888888888888888887
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=0.0002 Score=49.66 Aligned_cols=102 Identities=11% Similarity=-0.079 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
+|..+.....+.+..+.|...|.++....+ ....+|...+.+.. .-.++.+.|...|+.++...|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-------~~~~vy~~~A~~E~---~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-------CTYHVYVAYALMEY---YCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------S-THHHHHHHHHHH---HTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 566777777778889999999999996443 23344554444431 22266677999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
|......+...++.+.+...|++++..-|...
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999998877765
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.0016 Score=46.38 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|.+|.....+.-+..+....++..-+...-.+|+++.+=.++.++-+..++ ..-......+... ...|++
T Consensus 100 ~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~------~~l~v~ltrarll----l~~~d~ 169 (400)
T COG3071 100 FQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD------DTLAVELTRARLL----LNRRDY 169 (400)
T ss_pred HHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC------chHHHHHHHHHHH----HhCCCc
Confidence 888999888887777776777777888889999999999999999988441 2222334444444 334999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
+.|..-..+++...|.++.++.....+|...|++.+....+.+.-+..
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988887766554
No 221
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.07 E-value=2.5e-05 Score=58.13 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=86.5
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 55 ALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
|..+...|+...|+.++..++...|. ..-....+++++.... +-.-+|-.++.+++.++...+-.++.+|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~------~~~v~~v~la~~~~~~----~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPL------QQDVPLVNLANLLIHY----GLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChh------hhcccHHHHHHHHHHh----hhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 44555679999999999999998873 2333345566655333 6778899999999999988889999999
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 135 ECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 135 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.++..+.+.+.|++.|+.+++++|+++.....|..+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999999887666544
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8.2e-05 Score=51.69 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcc----cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc
Q 039398 9 IGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYK----DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT 84 (172)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 84 (172)
.|..++...+ |..|+..|.+.+...-. ++..|.++|.+.+..|+|..|+....+++.++|.+
T Consensus 87 eGN~~fK~Kr-----------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--- 152 (390)
T KOG0551|consen 87 EGNEYFKEKR-----------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--- 152 (390)
T ss_pred HhHHHHHhhh-----------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---
Confidence 5666666666 99999999999987533 45578899999999999999999999999999944
Q ss_pred hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 039398 85 EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 123 (172)
..++++-+.+...+ .++.+|...+...++++
T Consensus 153 ----~Ka~~R~Akc~~eL----e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 153 ----LKAYIRGAKCLLEL----ERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----hhhhhhhhHHHHHH----HHHHHHHHHHhhhhhhh
Confidence 44444444444333 56566666665555543
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.00032 Score=51.39 Aligned_cols=119 Identities=18% Similarity=0.060 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC-----------Ccc--c-hhh----hhHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAV-----------KTL--T-EKE----KGDA 91 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----------~~~--~-~~~----~~~~ 91 (172)
+..-+..-.+|++++|+.++++..++.-. ..-..+|.+.++++++.... ... . ... ...+
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 67778888999999999999999988632 22345566666665532210 000 0 000 0111
Q ss_pred HHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 92 LFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD--NVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
-..++. |.+++|+.++|++.++..++.+|. +..++.++..++..++.|.++...+.+.=
T Consensus 262 KrRLAm----CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAM----CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHH----HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 223333 347789999999999999998875 46789999999999999999999888764
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00071 Score=45.04 Aligned_cols=110 Identities=13% Similarity=0.017 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN-- 126 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-- 126 (172)
..+...+.+| +.++.++|+.++++++++-.. ......-+..+..+|.++. ..+.++++||.+|+++-.-....
T Consensus 75 t~YveA~~cy-kk~~~~eAv~cL~~aieIyt~-~Grf~~aAk~~~~iaEiyE---sdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 75 TTYVEAANCY-KKVDPEEAVNCLEKAIEIYTD-MGRFTMAAKHHIEIAEIYE---SDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred HHHHHHHHHh-hccChHHHHHHHHHHHHHHHh-hhHHHHHHhhhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHcchhh
Confidence 3444444554 445888888888888875320 0000111122234455443 22378899999999987654322
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 127 ----VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 127 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
...+...+..-..+++|.+|+..|+++....-+++-.
T Consensus 150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 2456667777788899999999999998776665543
No 225
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00029 Score=49.74 Aligned_cols=130 Identities=13% Similarity=0.035 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHh--hhHHHH----HH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKR--AEVKMS----MN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~ 103 (172)
|.+|++.|.+.+.-+|.....-..+|.||+++.-|+-+.+.+.-.++.-|++.......+..+|.+ |+.... +.
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988886665444444444433 111110 00
Q ss_pred HH-hCCHHHHHHHHHH----------HHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 104 RR-AGRVDSAIDDLTE----------AVKIQDD----NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 104 ~~-~~~~~~A~~~~~~----------~l~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.. ...|+.+...++. +++.-|. -|++..++..-|.++++.++|....+ .++|..|.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~ 317 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPY 317 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChH
Confidence 00 0123333333332 1222221 25666777777777777777776665 34555554
No 226
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.03 E-value=1.2e-05 Score=36.48 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367788888888888888888888888888763
No 227
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=98.01 E-value=0.00012 Score=42.78 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=72.2
Q ss_pred HHHHHHHhCChhHHHHHHHHhhCCCCCCcc---chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 54 KALALDLQGFKTSALESFDLALSIPAVKTL---TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 54 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
++..++..|++-+|++..+..+...+.... .....+.+++.++.....-..+..-.-.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 466788889999999999999876653331 22233444444443332111121223567888999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
+.+|.-+-....|++++.-.++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988877788899998888888764
No 228
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.94 E-value=0.00031 Score=56.40 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhccCccc-----HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD-----AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
+++|...+++++...|.. ..+...+|.++...|++++|...+.+++....... .......++..++.++ .
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~----~ 542 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEIL----F 542 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHH----H
Confidence 888999999988754432 23567789999999999999999999986533111 1112233445555555 4
Q ss_pred HhCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 105 RAGRVDSAIDDLTEAVKIQDD--------NVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..|++++|...+.+++..... ....+..+|.++...|++++|...+.+++...
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 559999999999999876221 12345678889999999999999999988753
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.90 E-value=0.0027 Score=45.58 Aligned_cols=135 Identities=17% Similarity=0.135 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcc----CcccHHHHHHHHHHHHH---hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISF----DYKDAAAHILKALALDL---QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
|+.=+...+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.... ...+..+...|+++...
T Consensus 157 ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~------~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE------NPDPDTLGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC------CCChHHHHHHHHHHHHH
Confidence 55444555444433 34567788889999998 8999999999999664432 25666778888888765
Q ss_pred HHH-----hCCHHHHHHHHHHHHHhCCCCHH---------------------------------------------HHHH
Q 039398 103 NRR-----AGRVDSAIDDLTEAVKIQDDNVK---------------------------------------------ALCL 132 (172)
Q Consensus 103 ~~~-----~~~~~~A~~~~~~~l~~~~~~~~---------------------------------------------~~~~ 132 (172)
+.. ....++|+..|.++.+.+|+.-. ..-.
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~AT 310 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVAT 310 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 433 23578999999999988764310 0112
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 133 LGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 133 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++.+..-.|+++.|.+.+++++++.|........+..+
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 35556667889999999999999998877665555443
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=7.7e-05 Score=54.95 Aligned_cols=105 Identities=16% Similarity=0.032 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
...-|.-.+..+....++..|.+++...| .....+.+.+.+++.-+.+ |+.-.|+..+..+++++|...++|
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~-------~~~~~l~nraa~lmkRkW~-~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVP-------DAIYLLENRAAALMKRKWR-GDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhcc-------chhHHHHhHHHHHHhhhcc-ccHHHHHHhHHhhccCChHHHHHH
Confidence 33344444455667788888888888766 5555566666666555455 788889999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
+.|+.++..++++.+|+.....+....|.+...
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 999999999999999999888877777866543
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.88 E-value=2.9e-05 Score=36.14 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
++.++|.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888885543
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.86 E-value=1.8e-05 Score=36.23 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998766
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.83 E-value=0.00028 Score=40.18 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc--HHHHHHH
Q 039398 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW--TDAQAAL 167 (172)
Q Consensus 112 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 167 (172)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|++ ..++..|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~l 64 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRL 64 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHH
Confidence 4567888999999999999999999999999999999999999999876 4454444
No 234
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.80 E-value=9e-05 Score=51.18 Aligned_cols=64 Identities=25% Similarity=0.372 Sum_probs=59.3
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++.|+.++|...|..++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.++...-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4559999999999999999999999999999999999999999999999999999999876543
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.80 E-value=0.00067 Score=54.57 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (172)
+++|...+.+++..... ...++..+|.++...|++++|...+++++.+...... ........+..+|.++
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--- 583 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL--- 583 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH---
Confidence 77788888887754322 1346677899999999999999999999865321100 0011122233445554
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDD-----NVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
...|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.
T Consensus 584 -~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 584 -WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred -HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4449999999999999876321 24566778999999999999999999997653
No 236
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.78 E-value=6.5e-05 Score=33.30 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
.++..+|.++...|++++|...|+++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467888899999999999999999998888753
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.74 E-value=0.0018 Score=53.01 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|.++|+..++...+....|...|..++...+-+.|...+.++++--|. ..........+.+...+ |+.
T Consensus 1546 ~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-----~eHv~~IskfAqLEFk~----GDa 1616 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-----QEHVEFISKFAQLEFKY----GDA 1616 (1710)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-----hhhHHHHHHHHHHHhhc----CCc
Confidence 778888888888887777888888888888888888888888888876662 12333344455555333 888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
+.+...|+-.+.-+|.-.+.|..+...-.+.|+.+.....|++++.+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888664
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.74 E-value=0.0061 Score=43.54 Aligned_cols=130 Identities=15% Similarity=0.060 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhccCc----ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC-------------------------
Q 039398 30 AKQAEAEADKAISFDY----KDAAAHILKALALDLQGFKTSALESFDLALSIPAV------------------------- 80 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------------------------- 80 (172)
++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+.....
T Consensus 162 ~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T PF02259_consen 162 FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISST 241 (352)
T ss_pred cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccccc
Confidence 7788888888877652 25788899999999999999999999888861110
Q ss_pred --CccchhhhhHHHHHhhhHHHHHH--HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------------
Q 039398 81 --KTLTEKEKGDALFKRAEVKMSMN--RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM-------------- 142 (172)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-------------- 142 (172)
........+.++..+|.+....+ ...+..++++..|.+++..+|+...+|+.+|..+...=+
T Consensus 242 ~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 321 (352)
T PF02259_consen 242 NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDR 321 (352)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHH
Confidence 11123445666777777663220 012788999999999999999999999999887655422
Q ss_pred ---HHHHHHHHHHHHccCCC
Q 039398 143 ---RDEAKTAYESALKIEPS 159 (172)
Q Consensus 143 ---~~~A~~~~~~al~~~p~ 159 (172)
...|+..|-+++...|.
T Consensus 322 ~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 322 SEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 24588999999999888
No 239
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0058 Score=41.61 Aligned_cols=121 Identities=18% Similarity=0.024 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.+-|...+++..+.+.+ ..+..+|..+.. .+++.+|.-.|+..-.-.| .....+..++.+...+
T Consensus 153 ~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~-------~T~~llnG~Av~~l~~--- 220 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP-------PTPLLLNGQAVCHLQL--- 220 (299)
T ss_pred HHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC-------CChHHHccHHHHHHHh---
Confidence 66777777777766554 334445544443 2468899999999887433 3333444555555333
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHccCCCcHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKT-AYESALKIEPSWTDA 163 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~ 163 (172)
++|++|...++.++..++++++.+.++-.+-...|...++.. .+.+....+|+.+-+
T Consensus 221 -~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 221 -GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred -cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999999999999999999999999889998766554 445555667776654
No 240
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.71 E-value=0.0001 Score=48.72 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=54.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.++.+.+.+.|.+++.+-|+....|+.+|....+.|+++.|.+.|++.++++|++..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 389999999999999999999999999999999999999999999999999998754
No 241
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00019 Score=52.55 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhC---------CCC--CCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALS---------IPA--VKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTE 118 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (172)
+|.++|.+++.+|.|.-+..+|.+++. +.| ...........++|+.|-.+... |+.-.|.++|.+
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~----grPl~AfqCf~~ 360 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS----GRPLLAFQCFQK 360 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc----CCcHHHHHHHHH
Confidence 567899999999999999999999994 122 22223344566778888888666 999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 039398 119 AVKIQDDNVKALCLLGECYEVK 140 (172)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~~~ 140 (172)
+....-.+|..|..++.|+...
T Consensus 361 av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00067 Score=47.61 Aligned_cols=109 Identities=20% Similarity=0.063 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC--
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-QDDN-- 126 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~-- 126 (172)
-....+.+.+..|++.+|...+++.++-.|.+...+.....+++.. |+.......+.+++.. +|+-
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~-----------G~~~~~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYN-----------GNQIGKKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhc-----------cchhhhhhHHHHhccccCCCCcH
Confidence 3445566777889999999999999998887777666666666644 5555666677777776 5555
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 127 -VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 127 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.-..-+++.++...|-+++|.+.-.++++++|.+..+...+..
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aH 217 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAH 217 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHH
Confidence 3455567788999999999999999999999998877665544
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.62 E-value=0.00015 Score=33.66 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
++..+|.++...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999997643
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.61 E-value=8.6e-05 Score=33.51 Aligned_cols=31 Identities=19% Similarity=-0.011 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
++++.+|.++...|++++|+..|++++...|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4789999999999999999999999998766
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.58 E-value=0.0015 Score=46.42 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhccCc-----ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 30 AKQAEAEADKAISFDY-----KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
+.+++.+-+-.+.+-. .-......+|..+..++.++.+++.|+.++......... .....++..+|.++.
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-~LElqvcv~Lgslf~---- 173 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-MLELQVCVSLGSLFA---- 173 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-eeeeehhhhHHHHHH----
Confidence 4445554444444322 223577779999999999999999999999765422221 122345666777774
Q ss_pred HhCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 105 RAGRVDSAIDDLTEAVKIQD----DN------VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~----~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
.++++++|.-+..++..+-. ++ ..+++.++..+..+|+..+|.++.+++.++.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44999999999999987732 22 2367888999999999999999999988653
No 246
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.55 E-value=0.00068 Score=41.12 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 107 GRVDSAIDDLTEAVK-IQDD-NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+..+.+..++..+. -.|. .-+..+.++..+.+.++|+.+..+....++.+|+|..+...-..+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 678899999999997 4443 346889999999999999999999999999999999987665544
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.54 E-value=0.0075 Score=44.60 Aligned_cols=108 Identities=12% Similarity=-0.056 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-QDDNV 127 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~~ 127 (172)
.+...+|+|..++|+.++|++.++..++..|. .+...+..++-.++... +.|.++...+.+--.. -|+++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-----~~~l~IrenLie~LLel----q~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-----LDNLNIRENLIEALLEL----QAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-----cchhhHHHHHHHHHHhc----CCHHHHHHHHHHhccccCCchH
Confidence 35567899999999999999999999987651 12334556666666444 9999998888885333 25566
Q ss_pred HHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHccCCCcHHHHH
Q 039398 128 KALCLLGECYEV-KKM---------------RDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 128 ~~~~~l~~~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
...+.-+....+ .++ -..|++.+.+|++.+|.-+.-..
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 666655554322 121 13477899999999998776443
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.46 E-value=0.0098 Score=38.44 Aligned_cols=104 Identities=14% Similarity=-0.001 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC--C
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ--D 124 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~ 124 (172)
-..++..+|..|.+.|++++|++.|.++..... ........++.+-++.... +++.....++.++-..- +
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~----~~~~~id~~l~~irv~i~~----~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT----SPGHKIDMCLNVIRVAIFF----GDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC----CHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHhcc
Confidence 356788999999999999999999999886543 2334444455444444333 99999999998886652 3
Q ss_pred CCHH----HHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 125 DNVK----ALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 125 ~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
.++. ....-|..+...++|..|.+.|-.+..-..
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3333 344567788889999999999987765443
No 249
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.41 E-value=0.0021 Score=36.58 Aligned_cols=47 Identities=21% Similarity=0.052 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
.+..+++.+..+|++.++.+.+|..+...|++++|++.+-.++..++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 46677888999999999999999999999999999999999999876
No 250
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.41 E-value=0.00032 Score=30.85 Aligned_cols=31 Identities=26% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
.++..+|.++...+++++|+.+++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 5688999999999999999999999998876
No 251
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0043 Score=45.75 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM-RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...|.++++.+|+++..|...-+
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 333668899999999999999999999999987776665 999999999999999999998865433
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.36 E-value=0.0052 Score=40.94 Aligned_cols=97 Identities=24% Similarity=0.226 Sum_probs=61.0
Q ss_pred hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhCC--C----CH
Q 039398 61 QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV-------DSAIDDLTEAVKIQD--D----NV 127 (172)
Q Consensus 61 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~~l~~~~--~----~~ 127 (172)
...+++|++.|.-++-............+..+..++-++ +.+++. ..|.+.|.+++.... . ..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWly----R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLY----RDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----hccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 445667777666666221111112234555566666666 444554 455666666655432 2 24
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
...+.+|.+....|++++|.++|.+++.......
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 6889999999999999999999999997654443
No 253
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0048 Score=42.14 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=65.9
Q ss_pred hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 88 KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
....+..+.+...+.+...++++.|....++.+..+|.++.-+.-.|.+|.++|.+.-|++.+...+...|+++.+-..
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3344444555555555666999999999999999999999999999999999999999999999999999998876433
No 254
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.36 E-value=0.0031 Score=49.38 Aligned_cols=90 Identities=23% Similarity=0.115 Sum_probs=74.0
Q ss_pred HHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039398 59 DLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYE 138 (172)
Q Consensus 59 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 138 (172)
...+++.+|.....+.+...| +...+....|... .++|+.++|..+++..-...+++...+-.+-.||.
T Consensus 20 ld~~qfkkal~~~~kllkk~P-------n~~~a~vLkaLsl----~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP-------NALYAKVLKALSL----FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHH----HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 356889999999999998777 3333333333333 45599999998888877778888899999999999
Q ss_pred HccCHHHHHHHHHHHHccCCC
Q 039398 139 VKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 139 ~~~~~~~A~~~~~~al~~~p~ 159 (172)
.+++.++|...|++++..+|+
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc
Confidence 999999999999999999999
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.022 Score=42.29 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=78.5
Q ss_pred hhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 25 SASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
.+.+...+-+..|+.+....+.++..|........+.+.+.+-...|.+++...|.. +..|..-+.+....
T Consensus 82 sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-------~dLWI~aA~wefe~-- 152 (568)
T KOG2396|consen 82 SDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-------PDLWIYAAKWEFEI-- 152 (568)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------chhHHhhhhhHHhh--
Confidence 344557788899999999999999999999888888888999999999999999844 44444444443322
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
.-+.+.|...+.++++.+|+++..|...
T Consensus 153 -n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 153 -NLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred -ccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 1348999999999999999999887654
No 256
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.29 E-value=0.0036 Score=47.19 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCcccHH-HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAA-AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
...|+.++..++...|.... ...++|.+...-|-...|...+.+++.+.. ...-.++.+|+.+..+ .+
T Consensus 623 ~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-------sepl~~~~~g~~~l~l----~~ 691 (886)
T KOG4507|consen 623 STFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-------SEPLTFLSLGNAYLAL----KN 691 (886)
T ss_pred cHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-------cCchHHHhcchhHHHH----hh
Confidence 67899999999999886544 588999999999999999999999998764 3444567888888766 99
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.+.|++.|++++..+|+++..-..+-.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999999999999876655543
No 257
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.28 E-value=0.018 Score=38.44 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcc------Cc-ccHHHHHHHHHHHHHhCChh-------HHHHHHHHhhCCCCCCccchhhhhHHHHHh
Q 039398 30 AKQAEAEADKAISF------DY-KDAAAHILKALALDLQGFKT-------SALESFDLALSIPAVKTLTEKEKGDALFKR 95 (172)
Q Consensus 30 ~~~A~~~~~~~~~~------~p-~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (172)
+++|+..|.-|+-. .| .-+..++.+|++|...|+.+ .|...|.+++.... .+....+...+.+.+
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~-~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED-FPIEGMDEATLLYLI 171 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc-CCCCCchHHHHHHHH
Confidence 77777777655432 22 23567888999999999954 55666666664432 111233445567778
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 039398 96 AEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV-KALCLLGECY 137 (172)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~ 137 (172)
|.+. ++.|++++|+..|.+++.....+. ..+..++.-.
T Consensus 172 geL~----rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 172 GELN----RRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHH----HHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 8877 666999999999999998744332 3555555433
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.025 Score=38.22 Aligned_cols=105 Identities=13% Similarity=-0.008 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-----C
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-----D 124 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----~ 124 (172)
.+..-+.+|...++|++|..++.++++-... ...+..-+..+-..+.+ ...+..+.++..+++++.... |
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamL----ake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAML----AKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 4445566777778888888888887742110 00111222222222222 244477778888888876652 3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+.+..-...+--.....++++|++.|++++.+-..
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 33333333333344556788888888887765443
No 259
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.012 Score=41.86 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=89.9
Q ss_pred chhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 23 KSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
........+.-+..|++|++.+|++...+..+-.+..+..+.++....+++++..+|.....|...... .+++.
T Consensus 40 ~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~--~q~~~---- 113 (321)
T PF08424_consen 40 KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF--RQSNF---- 113 (321)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH--HHHHh----
Confidence 344556688899999999999999999999998888899999999999999999888433333332211 11111
Q ss_pred HHHhCCHHHHHHHHHHHHHh-------C----C-------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 103 NRRAGRVDSAIDDLTEAVKI-------Q----D-------DNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~-------~----~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..-.++.....|.++++. . + ....++..+.......|..+.|+..++-.++++
T Consensus 114 --~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 --ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred --ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 012455555555555543 1 0 012356677888899999999999999999876
No 260
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.029 Score=38.32 Aligned_cols=121 Identities=10% Similarity=-0.036 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQG-FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
..+|+..-..++.++|.+-.+|..+-.++..++ +..+-++++...+.-+|..-..|...-.+.- ..|+
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive-----------~l~d 127 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE-----------LLGD 127 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHH-----------HhcC
Confidence 457888888888888888888888877776655 5677788888888777633222222222211 1144
Q ss_pred HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 109 VD-SAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 109 ~~-~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+. .-+++.+.++..+..+-.+|...--+...-+.++.-+.+..+.++.+-.|.
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 44 445555555555555555555544444444444444444444444443333
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.0049 Score=38.33 Aligned_cols=46 Identities=26% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+++|+..+.+++..+|.+..++..+..++...|+..+|+..|+++.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7778888888888888888888888888888888888877777765
No 262
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.21 E-value=0.035 Score=38.79 Aligned_cols=126 Identities=21% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH--
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN-- 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 103 (172)
..+|+.+|..+ .....+.+.+.+|..+.. ..++.+|..+|+++........ ..+.+.++..+..-.
T Consensus 93 ~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 93 KTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQA 164 (292)
T ss_pred HHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhh
Confidence 78899999844 456678899999999987 5599999999999998643110 222455555553210
Q ss_pred -HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 104 -RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 104 -~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
....+...|+..|.++-... ++.+.+.+|.+|.. ..++++|..+|.++..... ..+...+
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~ 229 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNL 229 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence 00013347888898887775 78899999988865 3478999999999998776 4444333
No 263
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0082 Score=40.98 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-----
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ----- 123 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----- 123 (172)
...+.+..++.-.|+|.-++..+.++++.+| +........+|++.+.. |+.+.|..+++++-..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~------e~~p~L~s~Lgr~~MQ~----GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP------EQEPQLLSGLGRISMQI----GDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC------cccHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHhhhhc
Confidence 3556678888889999999999999999775 24555567778887555 99999999998654332
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 124 -DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 124 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
..+..+..+.+.++.-.+++..|...|.+++..||.++.+-
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 22345677788889999999999999999999999987653
No 264
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.11 E-value=0.057 Score=39.12 Aligned_cols=127 Identities=21% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.+-|..+-+++....|.-+.++...-......|+++.|++..+......-... ...+...+-...+.... ... -+.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~-~~aeR~rAvLLtAkA~s--~ld-adp 245 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK-DVAERSRAVLLTAKAMS--LLD-ADP 245 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH--Hhc-CCh
Confidence 67788888888888999888888877778889999999999887664321111 11111111111111110 022 567
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
..|...-.+++++.|+...+-..-+..++..|+..++-..++.+.+.+|.-
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 888999999999999999999999999999999999999999999988863
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.011 Score=44.22 Aligned_cols=83 Identities=18% Similarity=0.053 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhccCcc----cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYK----DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.++|++.|++++..... ..-.++.+|+++..+++|++|..++...++.+. | ..+...|..|-++..+
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-----W-Ska~Y~Y~~a~c~~~l--- 353 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-----W-SKAFYAYLAAACLLML--- 353 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-----c-HHHHHHHHHHHHHHhh---
Confidence 89999999998854333 234678899999999999999999999998653 2 3444445555555444
Q ss_pred hCCH-------HHHHHHHHHHHHh
Q 039398 106 AGRV-------DSAIDDLTEAVKI 122 (172)
Q Consensus 106 ~~~~-------~~A~~~~~~~l~~ 122 (172)
++. ++|.+.+.++-..
T Consensus 354 -~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 354 -GREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -ccchhhhhhHHHHHHHHHHHHHH
Confidence 766 8888888887544
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.10 E-value=0.056 Score=38.66 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=87.5
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI- 122 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~- 122 (172)
.......|...+.+....|+++.|...+.++....+.... ..+.+.+..+.+. ...|+..+|+..++..+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~---~~~~v~~e~akll----w~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES---LLPRVFLEYAKLL----WAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC---CCcchHHHHHHHH----HHcCCHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999876531111 1333444455555 4448889999888887771
Q ss_pred CC---------------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHccCCCcHHH
Q 039398 123 QD---------------------------------DNVKALCLLGECYEVK------KMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 123 ~~---------------------------------~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
.. ....++..+|...... +..+++...|..++.++|....+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 10 0134567777777777 88999999999999999999998
Q ss_pred HHHHHhh
Q 039398 164 QAALDRL 170 (172)
Q Consensus 164 ~~~l~~l 170 (172)
|..+...
T Consensus 295 ~~~~a~~ 301 (352)
T PF02259_consen 295 WHSWALF 301 (352)
T ss_pred HHHHHHH
Confidence 8876653
No 267
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.012 Score=40.97 Aligned_cols=86 Identities=9% Similarity=-0.071 Sum_probs=70.6
Q ss_pred HHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 58 LDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
+.+..+|+.|++++..-.+..| ..-..+..+|.+| ....+|..|..+|++.-...|......+..+..+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p-------~~rAgLSlLgyCY----Y~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSP-------RSRAGLSLLGYCY----YRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCc-------cchHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3677899999999999888877 3334455666666 4448999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHH
Q 039398 138 EVKKMRDEAKTAYESAL 154 (172)
Q Consensus 138 ~~~~~~~~A~~~~~~al 154 (172)
++.+.+.+|........
T Consensus 89 Y~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLL 105 (459)
T ss_pred HHhcccHHHHHHHHHhc
Confidence 99999999988776544
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.042 Score=35.83 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.+++|+..++.++....+. .-+-..+|.+....|++++|+..+......+ -.+...-..|.++...
T Consensus 104 ~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~elrGDill~k--- 172 (207)
T COG2976 104 NLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAELRGDILLAK--- 172 (207)
T ss_pred cHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHHHhhhHHHHc---
Confidence 3999999999888654332 3356778999999999999999988775421 1222234567777544
Q ss_pred hCCHHHHHHHHHHHHHhCCCCH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
|+-++|...|.++++..+..+
T Consensus 173 -g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 -GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -CchHHHHHHHHHHHHccCChH
Confidence 999999999999999975543
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.00 E-value=0.051 Score=41.68 Aligned_cols=116 Identities=16% Similarity=0.048 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcc-----CcccHHHHHHHHHHHHHhC-----ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISF-----DYKDAAAHILKALALDLQG-----FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
.+.|+.+|+.+... .-..+.+.+.+|.+|.... ++..|+.+|.++-.. ....+.+.+|.++
T Consensus 265 ~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~---------g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 265 LESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL---------GNPDAQYLLGVLY 335 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc---------CCchHHHHHHHHH
Confidence 78888888887651 1115567888999998843 678899999999886 4455667777776
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHccC
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK----KMRDEAKTAYESALKIE 157 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~ 157 (172)
..-. .-.++..|.++|..+... .+..+.+.++.|+..- .+...|..+|.++....
T Consensus 336 ~~g~-~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGT-KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCC-ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4331 114578999999988766 5678999999988653 46889999999999887
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.056 Score=36.67 Aligned_cols=118 Identities=15% Similarity=0.032 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|...+.++++-..+| +.++-..+++...+..+.|+...++++..+--... ....-+.++-.-+...
T Consensus 47 feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAmaleKAak~l---- 121 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMALEKAAKAL---- 121 (308)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHh----
Confidence 777777777776544433 23455667888888999999999999885321000 0011122222222222
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
.. .+.++|+.+|++++..-..+ .+.+-..+.++.....+++|...+.+-
T Consensus 122 en-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 122 EN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 23 78899999999988763322 234555667788888888887776654
No 271
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.043 Score=41.52 Aligned_cols=125 Identities=21% Similarity=0.123 Sum_probs=92.9
Q ss_pred HHHHHHHHHhccCcccHHHHHHH--HHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC-
Q 039398 32 QAEAEADKAISFDYKDAAAHILK--ALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR- 108 (172)
Q Consensus 32 ~A~~~~~~~~~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (172)
-++..+...+..+|.++..+... ...+...+....+.-....++..+| ....+..+++....- . |.
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~L~~ale~---~-~~~ 117 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNP-------ENCPAVQNLAAALEL---D-GLQ 117 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCc-------ccchHHHHHHHHHHH---h-hhH
Confidence 36666777777888888875544 7777888999899999999999888 455555555555432 2 44
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLL------GECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+.-+.....-+....|.+..+...+ +.....+|+..++....+++..+.|.++.+...+
T Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 118 FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 4444555555888888887766555 8888899999999999999999999987765443
No 272
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.93 E-value=0.0026 Score=30.16 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..++.++|.+|...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999998854
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.93 E-value=0.072 Score=37.12 Aligned_cols=128 Identities=14% Similarity=-0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcc----Cccc----HHHHHHHHHHHHHhC-ChhHHHHHHHHhhCC----CC---CCccchhhhhHHHH
Q 039398 30 AKQAEAEADKAISF----DYKD----AAAHILKALALDLQG-FKTSALESFDLALSI----PA---VKTLTEKEKGDALF 93 (172)
Q Consensus 30 ~~~A~~~~~~~~~~----~p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~----~~---~~~~~~~~~~~~~~ 93 (172)
++.|..++.++-.. +|+. ...+++.|......+ ++++|+.+++++.++ .+ .......-...++.
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 55666666655433 3433 457788899999999 999999999999876 22 11112233455555
Q ss_pred HhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 94 KRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
.++..+...... ...++|...++.+-...|+.+..+...-.++...++.+.+.+.+.+.+..-+
T Consensus 89 ~La~~~l~~~~~-~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 89 LLANAYLEWDTY-ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHcCCCh-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 566666443111 2345566666666666788777764444555557888888888888876544
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.92 E-value=0.011 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGEC 136 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 136 (172)
.++|+|++|..+++.+++..|++..+......+
T Consensus 12 ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 12 YKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 566999999999999999999998876655443
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.89 E-value=0.016 Score=40.52 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAV 80 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~ 80 (172)
.++|...|+.++.++|++++++..+|......++.-+|-.+|-+++.++|.
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 789999999999999999999999999988889999999999999999983
No 276
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.89 E-value=0.066 Score=41.20 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhccCcc----cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc---------c--chhhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYK----DAAAHILKALALDLQGFKTSALESFDLALSIPAVKT---------L--TEKEKGDALFK 94 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~--~~~~~~~~~~~ 94 (172)
.+.|-..|+++....-. -..+|..-|..-....+++.|+..++.+...-.... . .......+|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 67777778887776432 255777777777778888888888888875422101 0 12223445566
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CcHHHHH
Q 039398 95 RAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP--SWTDAQA 165 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 165 (172)
.+.+...+ |-++.....|.+++.+.--.|....+.|..+.....+++|.+.|++.+.+.| .-.+.|.
T Consensus 483 y~DleEs~----gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 483 YADLEESL----GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHh----ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 66666555 8888888888898888777788888888888888888888888888888763 3344453
No 277
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.87 E-value=0.003 Score=42.06 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=52.7
Q ss_pred HHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 57 ALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 57 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
.....++.+.+.+.|.+++.+.| .....|+.+|.+... .|+++.|...|.+.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap-------~w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAP-------EWAAGWFRLGEYTEK----AGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCc-------hhhhhhhhcchhhhh----cccHHHHHHHHHHHHcCCcccc
Confidence 45567899999999999999988 778889999999844 4999999999999999999764
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.87 E-value=0.017 Score=34.02 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCC
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIP 78 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 78 (172)
|...|..+...+.............-.+++.|.++..+.|..+..++.+|.-+.....|++++...++++.+.
T Consensus 36 h~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 36 HRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 6678888888887666666777788999999999999999999999999998888888999999999988754
No 279
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.021 Score=42.78 Aligned_cols=87 Identities=18% Similarity=0.038 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQG---FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
...++..|.+++...|.....+.+++.++.+.+ +.-.|+.....+++++| ....+++.+++++..+
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~-------s~~kah~~la~aL~el---- 458 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP-------SIQKAHFRLARALNEL---- 458 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh-------HHHHHHHHHHHHHHHH----
Confidence 788999999999999999999999999998864 44566667777888888 6667788888888555
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~ 127 (172)
+++.+|+.+...+...+|.+.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhh
Confidence 999999998888777788543
No 280
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.04 Score=43.68 Aligned_cols=105 Identities=16% Similarity=0.048 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhh----------CCCCCCccc---hhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLAL----------SIPAVKTLT---EKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
-..+++.|.-+...++.+.|+++|+++= .-+|..... .......|.-.|.+.. ..|+.+.|+.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE----S~GemdaAl~ 933 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE----SVGEMDAALS 933 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh----cccchHHHHH
Confidence 4578889999999999999999998863 222211110 0111222333455553 3488888888
Q ss_pred HHHHHHHh---------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 115 DLTEAVKI---------------------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 115 ~~~~~l~~---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+|..+-.- ...+..+.+.+|..|...|++.+|+.+|.++..+
T Consensus 934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88776432 3455678899999999999999999999988644
No 281
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.79 E-value=0.07 Score=41.07 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.....|++.+.+.--.|....+.|+.+-...-++++.+.|++.+.+-+ |+....+|...-......|.. ...
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-----~p~v~diW~tYLtkfi~rygg-~kl 566 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-----WPNVYDIWNTYLTKFIKRYGG-TKL 566 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-----CccHHHHHHHHHHHHHHHhcC-CCH
Confidence 44455667788888888899999999999999999999999999998864 344444443221111112222 568
Q ss_pred HHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 110 DSAIDDLTEAVKIQDDN-V-KALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
+.|...|++++...|.. + .++...+..-..-|--..|+..|+++...-+
T Consensus 567 EraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 99999999999988743 2 2455556666666888888888888775443
No 282
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.12 Score=37.59 Aligned_cols=136 Identities=11% Similarity=0.004 Sum_probs=100.0
Q ss_pred chhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH
Q 039398 23 KSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGF--KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (172)
........++-+.+...++..+|+...+|+.+..++.+.+. +..-+...+++++.+|.+...|...-.+ .+...
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV---~~~~~- 159 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV---VEQAE- 159 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH---HHHHh-
Confidence 34455578888999999999999999999999999987764 5788999999999998544444332211 12111
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cc------CHHHHHHHHHHHHccCCCcHHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV------KK------MRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~------~~------~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
.......+-+++..+++..++.|-.+|.....++.. .| -...-.+.-..++-.+|+|..+|.
T Consensus 160 ---~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 160 ---RSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred ---cccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 111336677889999999999999999998877762 23 134556677778888999988874
No 283
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.77 E-value=0.0066 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.055 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHccCCCc
Q 039398 128 KALCLLGECYEVKKMRDEAKTA--YESALKIEPSW 160 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~--~~~al~~~p~~ 160 (172)
+.++.+|..+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888888889999888 44777666654
No 284
>PRK10941 hypothetical protein; Provisional
Probab=96.75 E-value=0.041 Score=38.06 Aligned_cols=77 Identities=13% Similarity=-0.002 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
...++-.++.+.++++.|+.+.+..+.+.|..+. -+...|.++ .++|.+..|...++..++..|+++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-------e~RDRGll~----~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY-------EIRDRGLIY----AQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH----HHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3455677889999999999999999999994443 344455555 44499999999999999999999887
Q ss_pred HHHHHHHH
Q 039398 130 LCLLGECY 137 (172)
Q Consensus 130 ~~~l~~~~ 137 (172)
-.....+.
T Consensus 252 ~~ik~ql~ 259 (269)
T PRK10941 252 EMIRAQIH 259 (269)
T ss_pred HHHHHHHH
Confidence 65554443
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.73 E-value=0.05 Score=32.54 Aligned_cols=85 Identities=28% Similarity=0.212 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhccCcc------------cHHHHHHHHHHHHHhCChhHHHHHHHHhhC-------CCCCCccchhhhhH
Q 039398 30 AKQAEAEADKAISFDYK------------DAAAHILKALALDLQGFKTSALESFDLALS-------IPAVKTLTEKEKGD 90 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~~~~~~~~~~~~~ 90 (172)
|++|...+.+++..... +.-++-.++..+..+|+|++++.....++. +..+ .-.....
T Consensus 25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd---eGklWIa 101 (144)
T PF12968_consen 25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD---EGKLWIA 101 (144)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc---cchhHHH
Confidence 88888888887765321 445677889999999999999888888773 2210 1111122
Q ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
+.+..+... ..+|+.++|+..|+.+-+
T Consensus 102 aVfsra~Al----~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVAL----EGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHH----HHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhcCChHHHHHHHHHHHH
Confidence 224444444 333777777777766644
No 286
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=96.73 E-value=0.011 Score=40.83 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 112 AIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 112 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+...|..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998876677777766543
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.72 E-value=0.019 Score=42.64 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.-.|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-... .....+.. +.. ..++++
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~----~~~~~~~~---r~~----~~l~r~ 373 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT----DSTLRCRL---RSL----HGLARW 373 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC----chHHHHHH---Hhh----hchhhH
Confidence 3445555667788899999999999999999999999988876554321100 01111111 111 344889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
++|...-...+...-+++++...-+.....+|-++++.-+|++++.++|.....
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 999988888888777788887777777788899999999999999998865443
No 288
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.68 E-value=0.006 Score=42.54 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=63.3
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCL-LGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
+....|.....+. .+.+.|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++++|++|..|.
T Consensus 105 ~D~k~w~~y~~Y~----~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 105 NDPKIWSQYAAYV----IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3444555555444 33388899999999999999999999987 445678889999999999999999999999997
Q ss_pred HHHh
Q 039398 166 ALDR 169 (172)
Q Consensus 166 ~l~~ 169 (172)
..-+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 6544
No 289
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.028 Score=38.38 Aligned_cols=130 Identities=15% Similarity=-0.001 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChh-HHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKT-SALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
..+-++++.+.+..+|.|-..|..+-.+....|+.. .-++....++..+...-..|....-+ . +.-+.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~-------~----r~F~~ 162 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV-------L----RFFKD 162 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH-------H----HHHhh
Confidence 677889999999999999999999999999999888 88889999998765332233333222 2 22277
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c-----cCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEV-K-----KMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|+.-+.+..+.++.+-.+-.+|...-.+... . ...+.-+.+..+.+.+.|.|..+|.-|..+
T Consensus 163 ~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~ 230 (318)
T KOG0530|consen 163 YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGL 230 (318)
T ss_pred HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 8888899999988877776676554222211 1 123455677778888899999988776543
No 290
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.66 E-value=0.037 Score=40.34 Aligned_cols=100 Identities=12% Similarity=0.004 Sum_probs=66.6
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCCC-------CccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 55 ALALDLQGFKTSALESFDLALSIPAV-------KTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
|..+++.++|..|..-|..++++... ......+...+-.-+..-...||.++++.+-|+.+..+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 44566667777777777776644321 11111111111111111122356777999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..+...+.|+..+.+|.+|...+.-+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987766554
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.65 E-value=0.0062 Score=28.79 Aligned_cols=30 Identities=40% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
..++.++|.++...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999853
No 292
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.60 E-value=0.086 Score=37.55 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH--------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039398 69 ESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR--------RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK 140 (172)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 140 (172)
.-+++.+.-+| .....|..+......... ...-.+.-+..|++|++.+|++...+..+-.+..+.
T Consensus 6 ~el~~~v~~~P-------~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 6 AELNRRVRENP-------HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHHHhCc-------ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 34667777777 444455555444443311 113357788999999999999999999988888899
Q ss_pred cCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 141 KMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 141 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.+.++-.+-+++++..+|++...|.....
T Consensus 79 ~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999999999999999999977643
No 293
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.15 Score=38.05 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhccCcc-cH--HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 28 SLAKQAEAEADKAISFDYK-DA--AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~-~~--~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
..++.|...|..+.+.-.. +. -+-.++|.+|.+.|+-+.-.+..+..-..+..........+.+++..|-.. .
T Consensus 381 ~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa----f 456 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA----F 456 (629)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH----H
Confidence 3488888888888776443 33 345667999999887666555555443322111113444566667777666 4
Q ss_pred HhCCHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 105 RAGRVDSAIDDLTEAVKIQD-DN-----VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
.++++.+|...+.+.++... .+ .-.+..+|.+....|+..++....+-++.+.
T Consensus 457 ~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 44999999999999998851 11 2346678888999999999988887777554
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.55 E-value=0.091 Score=33.22 Aligned_cols=85 Identities=16% Similarity=-0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
..+.....+-...++.+++...+...--+.| .....-..-|..+ ...|+|.+|+..++.+....|..+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP-------~~~e~~~~~~~l~----i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRP-------EFPELDLFDGWLH----IVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCC-------CchHHHHHHHHHH----HHhCCHHHHHHHHHHHhccCCCChH
Confidence 4566667777778899999999888887777 4444444444444 3339999999999999999999999
Q ss_pred HHHHHHHHHHHccCHH
Q 039398 129 ALCLLGECYEVKKMRD 144 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~ 144 (172)
+--.++.|+..+|+.+
T Consensus 80 ~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 80 AKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHcCChH
Confidence 9999999999999865
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.17 Score=40.41 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=46.8
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCHHHH
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEA----------VKIQD----------DNVKALCLLGECYEVKKMRDEA 146 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~~----------~~~~~~~~l~~~~~~~~~~~~A 146 (172)
..-..|++.+..+.+- ++.+.|+++|+++ +..+| .++..|...|.-+...|+.+.|
T Consensus 856 HLr~Tyy~yA~~Lear----~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEAR----RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred ehhhhHHHHHHHHHhh----ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 3444566666666443 8888898888875 22234 3456778889999999999999
Q ss_pred HHHHHHHH
Q 039398 147 KTAYESAL 154 (172)
Q Consensus 147 ~~~~~~al 154 (172)
+.+|..+-
T Consensus 932 l~~Y~~A~ 939 (1416)
T KOG3617|consen 932 LSFYSSAK 939 (1416)
T ss_pred HHHHHHhh
Confidence 99998875
No 296
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.22 Score=36.19 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHH-HHhCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEA-VKIQDD 125 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~~~ 125 (172)
+++...++-..|...++|+.=+...+..-.+.. .. ......+-+..+..+-.- .+.|+.++|+..+..+ ....+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~-~~--~~~~~~i~~~yafALnRr-n~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPT-CD--VANQHNIKFQYAFALNRR-NKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc-cc--hhcchHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHhccCCC
Confidence 567788888899999999988888887765421 11 112233333333333111 1159999999999994 455677
Q ss_pred CHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccCCCcH
Q 039398 126 NVKALCLLGECYEVK---------KMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 161 (172)
+++.+..+|.+|... ...++|+.+|.++..++|+..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 899999999988653 247899999999999998653
No 297
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.42 E-value=0.026 Score=31.00 Aligned_cols=64 Identities=22% Similarity=0.033 Sum_probs=48.4
Q ss_pred chhhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHH---HHHHHHHhCChhHHHHHHHHhhC
Q 039398 2 QAKRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHIL---KALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+++++.-.|..++.+.. ..+|+..+.++++..++.++-+.. +..++...|+|++.+.+..+-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~-----------~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNE-----------TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccch-----------HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777776655 889999999999998877665444 45678889999998887655543
No 298
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.32 E-value=0.25 Score=35.81 Aligned_cols=132 Identities=17% Similarity=0.022 Sum_probs=91.1
Q ss_pred hcCCchhhhhHHHHHHHHHHHHhcc-------------------CcccHH---HHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 19 SSKSKSSASSLAKQAEAEADKAISF-------------------DYKDAA---AHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 19 ~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..+......++.++|+-.+++++.. .+.|-. +.+.....+.+.|-+..|.++.+-.+.
T Consensus 52 ~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 52 QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3445566777888888888755332 122322 455667788899999999999999999
Q ss_pred CCCC-CccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHccCH-------
Q 039398 77 IPAV-KTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD-----DNVKALCLLGECYEVKKMR------- 143 (172)
Q Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~------- 143 (172)
++|. ++.......+.+. -+.++|+--++.++....... .-|..-+..+.++...++.
T Consensus 132 Ldp~~DP~g~ll~ID~~A----------Lrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~ 201 (360)
T PF04910_consen 132 LDPDEDPLGVLLFIDYYA----------LRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSA 201 (360)
T ss_pred cCCCCCcchhHHHHHHHH----------HhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccc
Confidence 9995 3322222222222 233788878887777655322 1346778888889889888
Q ss_pred --------HHHHHHHHHHHccCCCc
Q 039398 144 --------DEAKTAYESALKIEPSW 160 (172)
Q Consensus 144 --------~~A~~~~~~al~~~p~~ 160 (172)
+.|...+++|+...|.-
T Consensus 202 ~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 202 QSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccccccchhHHHHHHHHHHHHhHHH
Confidence 89999999999888754
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.31 E-value=0.26 Score=35.80 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=76.7
Q ss_pred HHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC-----CCCCC------------cc--chhhhhHHHHHhhhHH
Q 039398 39 KAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS-----IPAVK------------TL--TEKEKGDALFKRAEVK 99 (172)
Q Consensus 39 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~~~~------------~~--~~~~~~~~~~~~~~~~ 99 (172)
..+..+|-..+++..++.++...|+++.|.+.+++++- ..|.. .. ....+-..+..+-+..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34567899999999999999999999999999998871 11111 00 1222222222222222
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDD-NVK-ALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..+ .+.|.+.-|.++++-.+.++|. ++- +++.+-....+.++++-=+..++....
T Consensus 111 ~~L-~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSL-GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHH-HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 233 4459999999999999999998 764 444444455666777766666665443
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.29 E-value=0.026 Score=32.36 Aligned_cols=54 Identities=26% Similarity=0.243 Sum_probs=43.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 105 RAGRVDSAIDDLTEAVKIQDD---------NVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
+.++|..|++.+.+.+..... ...++.++|.++...|++++|+..+++++.+-.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 339999999888888765321 135778899999999999999999999997754
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.27 E-value=0.28 Score=35.79 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
...|.+.-.++.++.|+...+-..-+..++..|+..++-..++.+.+..| ++.....|. . . ..-
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-----HP~ia~lY~-~--------a--r~g 308 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-----HPDIALLYV-R--------A--RSG 308 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-----ChHHHHHHH-H--------h--cCC
Confidence 67788888899999999999999999999999999999999999999887 122222221 1 1 222
Q ss_pred HHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 110 DSAIDD---LTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 110 ~~A~~~---~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+.++.- ..+.-.+.|++.+..+..+..-..-|++..|...-+.+....|...
T Consensus 309 dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 309 DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 222222 3333455677777777777777777777777777777777766543
No 302
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.26 E-value=0.045 Score=31.38 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=44.4
Q ss_pred HHHHhCChhHHHHHHHHhhCCCCCCccch--hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 57 ALDLQGFKTSALESFDLALSIPAVKTLTE--KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 57 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
-....|+|.+|++.+.+.++......... .....++..++.+. ...|++++|+..+++++++-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~----~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELH----RRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999886544222211 12344456666666 444999999999999998743
No 303
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.26 E-value=0.029 Score=39.32 Aligned_cols=91 Identities=7% Similarity=-0.091 Sum_probs=70.0
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHH
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSA 112 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 112 (172)
-+-.|.++....|+++..|...+......|.|.+-...|.+++...|.....|......- + ...++++.+
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e------~----~~~ani~s~ 161 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFE------L----FEIANIESS 161 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccch------h----hhhccHHHH
Confidence 333455666678999999999999999999999999999999999995444333321111 1 223899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 039398 113 IDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~l 133 (172)
...+.++++.+|++|..|...
T Consensus 162 Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 162 RAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHhhhccCCCCchHHHHH
Confidence 999999999999999988654
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.16 E-value=0.01 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYE 151 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~ 151 (172)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467788889999999999888765
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.15 E-value=0.12 Score=42.05 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHH
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR---VDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~ 128 (172)
......+...+.|+.|+..|++.-..-|... .--.+.|..|-.........++ +++|+..|++.- -.|.-|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 553 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRK----EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPL 553 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcc----cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCch
Confidence 3345566777888999999998887766333 3334556666665544333344 667777666532 3456667
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
-+...|.+|..+|++++-++.|.-+++..|..|..-.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 7788888999999999999999999999998887543
No 306
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.12 E-value=0.011 Score=25.04 Aligned_cols=25 Identities=28% Similarity=0.070 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDL 73 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (172)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5678999999999999999988763
No 307
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.17 Score=39.07 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
.+.+-|.-+++..+|..+++.|...+..-|.+.... ..+.....+.-+| ..+.+.|.|.++++++-+.+|.++-.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~-~FaK~qR~l~~CY----L~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD-RFAKIQRALQVCY----LKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh-HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhccccHHH
Confidence 345567788899999999999999986555333211 1133334444444 55599999999999999999999988
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
-...-.+....|.-++|..........
T Consensus 431 q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 431 QLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888888889999998888776644
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.06 E-value=0.4 Score=35.63 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
..+|+|.++.-+..=..++.| ++.++..+|.|.....+|++|..++...
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 445999999998888889999 8999999999999999999999988754
No 309
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.03 E-value=0.014 Score=27.28 Aligned_cols=29 Identities=34% Similarity=0.368 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+++..||.+-...++|++|+..|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888855
No 310
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.89 E-value=0.36 Score=33.71 Aligned_cols=120 Identities=17% Similarity=-0.024 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhccCccc-HHHHHHHHHHHHHhC-------ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH
Q 039398 29 LAKQAEAEADKAISFDYKD-AAAHILKALALDLQG-------FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (172)
.+.+|..+|.++....... ..+.+.+|..+..-. +...|...|.++.... ...+.+.+|.++.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---------~~~a~~~lg~~y~ 198 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---------NPDAQLLLGRMYE 198 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---------CHHHHHHHHHHHH
Confidence 4899999999998875444 355788888877631 2337888888887653 4445566665553
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------------CHHHHHHHHHHHHccCCCc
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK---------------MRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---------------~~~~A~~~~~~al~~~p~~ 160 (172)
.-.---.++.+|+..|.++-.... ...++.++ ++...| +...|..++..+....+..
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 221112588999999999998866 88889999 666666 7788888888887666544
No 311
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.87 E-value=0.21 Score=30.72 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHhC---ChhHHHHHHHHhhC-CCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 47 DAAAHILKALALDLQG---FKTSALESFDLALS-IPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
.....+++++++.... +..+.+..++..++ -.| ...-.+.|.++--+ .++++|+.++.+++..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~------~~rRe~lyYLAvg~----yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHP------ERRRECLYYLAVGH----YRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCc------ccchhhhhhhHHHH----HHHhhHHHHHHHHHHHHhh
Confidence 4667888888887654 45678889999886 333 23333444444333 5559999999999999999
Q ss_pred CCCCHHHHHHH
Q 039398 123 QDDNVKALCLL 133 (172)
Q Consensus 123 ~~~~~~~~~~l 133 (172)
.|++..+....
T Consensus 101 e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 101 EPNNRQALELK 111 (149)
T ss_pred CCCcHHHHHHH
Confidence 99998765543
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.54 Score=35.29 Aligned_cols=119 Identities=17% Similarity=0.027 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHH-HHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALA-LDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
...++.+++..+...|.+ +.....+|.+ +....+++.|..+++++..+...-+..+..+-.+...++.++...
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~--- 101 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL--- 101 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh---
Confidence 889999999998887764 4456667655 456789999999999999654322222223333444455554222
Q ss_pred hCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNV----KALCLLGECYEVKKMRDEAKTAYE 151 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~ 151 (172)
...+..+...+.+++++..+.+ +..+.++.++.-..++..|.+.+.
T Consensus 102 ~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 102 AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 1378899999999999977654 456778999999999999988754
No 313
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.83 E-value=0.15 Score=42.24 Aligned_cols=124 Identities=15% Similarity=-0.005 Sum_probs=90.8
Q ss_pred HHHHHHHHHHH-hccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKA-ISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~-~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
..+++..+... -...|.....+..++.++...|++++|+..-.++.-+..... ...++....+.+++.+...+ +
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~----~ 1029 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV----K 1029 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc----c
Confidence 34555566643 335788899999999999999999999999888875543222 24455566666666555444 6
Q ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 108 RVDSAIDDLTEAVKI--------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
+...|...+.++..+ .|.-.....+++.++...++++.|+.+.+.|++..
T Consensus 1030 ~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1030 NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 777888887777654 45555667888888889999999999999998743
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.67 E-value=0.27 Score=34.19 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=47.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..++++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-.
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 339999999999999999999999999999999999999999999988765
No 315
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.024 Score=40.19 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCC---CCcc----c-----hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPA---VKTL----T-----EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEA 119 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 119 (172)
-..+...+..++++.|..-|.+++..-. .... . ......+..+.+.+- .+.+.+..|+.....+
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~----lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVG----LKVKGRGGARFRTNEA 301 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhc----ccccCCCcceeccccc
Confidence 3456678888999999888888773211 1000 0 001111112222222 4558899999888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 120 VKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 120 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++.++....+++.++..+....++++|.+.++.+....|++......+...
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 888899999999999999999999999999999999999998876666543
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.52 E-value=0.34 Score=30.74 Aligned_cols=61 Identities=20% Similarity=0.079 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++.+++...+.-.-.+.|+.+..-..-|.++...|++.+|+..++.+....|..+.+.-.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 8899999999888889999999999999999999999999999999988888877654433
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.52 E-value=0.52 Score=32.89 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=72.9
Q ss_pred HHHhCChhHHHHHHHHhhCCC-CCCccchhhhhHHHHHhhhHHHHHHHHhC-CHHHHHHHHHHHHHhC----C---CC--
Q 039398 58 LDLQGFKTSALESFDLALSIP-AVKTLTEKEKGDALFKRAEVKMSMNRRAG-RVDSAIDDLTEAVKIQ----D---DN-- 126 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~----~---~~-- 126 (172)
....|+++.|..++.++-... ...+......+..+|+.|.... ..+ +++.|+..+++++..- + ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~----~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL----SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH----HcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 357899999999999988665 3333355567777888887773 338 9999999999998872 1 11
Q ss_pred -----HHHHHHHHHHHHHccCHH---HHHHHHHHHHccCCCcHHHH
Q 039398 127 -----VKALCLLGECYEVKKMRD---EAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 127 -----~~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~ 164 (172)
..++..++.++...+.++ +|......+-...|+.+...
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 246778888998887755 45555555656667766544
No 318
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.50 E-value=0.49 Score=36.13 Aligned_cols=106 Identities=19% Similarity=0.002 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-CCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-QDD 125 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~ 125 (172)
+...|......-...|+++...-.|++++.... .....|++...+..+. |+.+-+...+.++.+. .|.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA-------~Y~efWiky~~~m~~~----~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCA-------LYDEFWIKYARWMESS----GDVSLANNVLARACKIHVKK 364 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh-------hhHHHHHHHHHHHHHc----CchhHHHHHHHhhhhhcCCC
Confidence 445677777777788999999999999887544 4555677777766444 7777777777777666 356
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 126 NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
.+.+...-+......|++..|...+++.....|+...+
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 67777777778888888888888888888777776553
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.45 E-value=0.29 Score=29.45 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=60.6
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCC----CCccchh-hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-------
Q 039398 55 ALALDLQGFKTSALESFDLALSIPA----VKTLTEK-EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI------- 122 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------- 122 (172)
|.-....|-|++|...+++++.... .....+. ..+.++-.++..+ ..+|+|++++..-..++..
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~----~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGAL----AGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHH----HhhccHHHHHHHHHHHHHHHhhcccc
Confidence 4445567899999999999984332 2222221 2333344444444 4458888877766666643
Q ss_pred CCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 123 QDDNVK----ALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 123 ~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+.+.-+ +.+..+..+...|+.++|...|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444433 456789999999999999999998764
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.42 Score=30.91 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCccc--HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKD--AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
.++|+.-|...-+-.-.. .-+.+..|.+..+.|+...|+..|..+-.-.|... . ..-.+-..-+.++ ...|
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-~--~rd~ARlraa~lL----vD~g 146 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-I--GRDLARLRAAYLL----VDNG 146 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc-h--hhHHHHHHHHHHH----hccc
Confidence 567777776665544332 23567789999999999999999999876543110 0 0011112222222 3448
Q ss_pred CHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 108 RVDSAIDDLTEAV-KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 108 ~~~~A~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
.|++-..-.+..- ..+|--..+...||..-++.|++.+|...|.....
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8887766554332 23455567888999999999999999999998875
No 321
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.30 E-value=0.94 Score=34.53 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
|.-+++..-|...|+-.+...++++..-......+...++-..+...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 344488888888998888888888888888888888888888888888888866
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.75 Score=35.52 Aligned_cols=113 Identities=20% Similarity=0.089 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQG---FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.+..|+.+|.++-.. .++++.+.+|.++..-. ++..|..+|..+... ....+.+.++.++..-..-
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------GHILAIYRLALCYELGLGV 376 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhCCCc
Confidence 478899999988765 45778888998887755 578999999999875 4555666666666432122
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK-KMRDEAKTAYESAL 154 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al 154 (172)
..+...|..+++++-+.+ .+.+.+.++.++..- +.++.+.-.+....
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 268899999999999987 456566665554433 56555555444433
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.11 E-value=0.57 Score=30.92 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=42.9
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHH
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD----NVKALCLLGECYEVKKMRDEAK 147 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 147 (172)
+.+...+.+|.+| .+ .+.++++..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 139 ~t~elq~aLAtyY----~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYY----TK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHH----Hc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444555566555 44 8889999999999988543 4788999999999999998885
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.09 E-value=0.03 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.036 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
+++..+|.+....++|++|+..|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999975
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.01 E-value=0.29 Score=26.99 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
-....|.-++...+.++|+..++++++..+ +....+..+|.+..+. ...|+|.+.+.+--+-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-------~~~~rf~~lG~l~qA~-~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKIT-------DREDRFRVLGYLIQAH-MEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345567777788889999999999997655 2333444455444333 4458888888776554443
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.00 E-value=0.49 Score=29.62 Aligned_cols=83 Identities=14% Similarity=0.001 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+.....+-...++..++...+...--+.| .....-.--|.++ ...|+|.+|+..++......+..+-..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP-------~~~e~d~~dg~l~----i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRP-------NLKELDMFDGWLL----IARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------CccccchhHHHHH----HHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 44444455557888888888887777777 3333333333333 233999999999999988888888888
Q ss_pred HHHHHHHHHccCHH
Q 039398 131 CLLGECYEVKKMRD 144 (172)
Q Consensus 131 ~~l~~~~~~~~~~~ 144 (172)
-.++.|+..+|+.+
T Consensus 82 AL~A~CL~al~Dp~ 95 (153)
T TIGR02561 82 ALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHhcCChH
Confidence 88899999888865
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.95 E-value=0.18 Score=31.46 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+.++...+...--+.|+.++.-..-|.++...|+|.+|+..++...+-.+
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 77788888888888999999999999999999999999999999987665
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.92 E-value=1.6 Score=35.20 Aligned_cols=117 Identities=17% Similarity=0.066 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCC--ccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVK--TLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
+|......++......++.+|...+.++...-+.. .......+...-..+.+. ...|+.++|++..+.++..-|
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va----l~~~~~e~a~~lar~al~~L~ 489 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA----LNRGDPEEAEDLARLALVQLP 489 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHhcc
Confidence 56677788999999999999999988877433311 111111222222222222 344999999999999999877
Q ss_pred CC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc----CCCcHHHHHHH
Q 039398 125 DN-----VKALCLLGECYEVKKMRDEAKTAYESALKI----EPSWTDAQAAL 167 (172)
Q Consensus 125 ~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l 167 (172)
.+ ..+...+|.+..-.|++++|..+.+.+.+. +...-.+|..+
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 65 346788999999999999999999998877 44444445444
No 329
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.90 E-value=0.15 Score=35.20 Aligned_cols=46 Identities=22% Similarity=0.093 Sum_probs=41.0
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCC
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIP 78 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 78 (172)
|..+|.+|+.+.|++...+..+|.+....|+.-.|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999999999999554
No 330
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.35 Score=37.50 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=53.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
.+..+|..+++.|...+...|.+ .+....++.||..+.+.+.|.+++++|-+.+|.++-...
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34499999999999999887765 457788999999999999999999999999998875443
No 331
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.1 Score=32.93 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcc----Cc-----ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF----DY-----KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~----~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (172)
+.+|...-+..+.. +. -.+..|+.+..++-..|+...-...+...+....-.. .....+... ++..
T Consensus 142 ~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh-d~e~qavLi----N~LL 216 (493)
T KOG2581|consen 142 YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH-DEEGQAVLI----NLLL 216 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC-cchhHHHHH----HHHH
Confidence 66666665544332 11 1345677788888888886666655555553221000 011122222 2222
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQ----DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
.+|.--+.|+.|-....++.-.. ...+..++.+|.+..-+++|..|.+++-.|+...|.+.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 22222278899988777764221 12356788899999999999999999999999999743
No 332
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.76 E-value=0.092 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 142 MRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 142 ~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+++.+...|++++...|.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34445555555555555555555443
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.72 E-value=1.5 Score=33.74 Aligned_cols=131 Identities=15% Similarity=-0.026 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.....|++++--.......|...+.-....|+.+-|-..+..+.++.. +....+....+.+.. ..|++
T Consensus 313 ~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------k~~~~i~L~~a~f~e----~~~n~ 382 (577)
T KOG1258|consen 313 FSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV------KKTPIIHLLEARFEE----SNGNF 382 (577)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------CCCcHHHHHHHHHHH----hhccH
Confidence 56666677777766667778888888877777888888777777776543 122223333333332 22777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------------HHccCHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECY-----------------------------------------EVKKMRDEAKT 148 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~-----------------------------------------~~~~~~~~A~~ 148 (172)
+.|...++++.+..|+...+-....... .-.++.+.|..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777777666665544333222222 33455666777
Q ss_pred HHHHHHccCCCcHHHHHHHHhh
Q 039398 149 AYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 149 ~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+.+++...|++...+..+.++
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHHhhhcCCccHHHHHHHHHH
Confidence 7777777777776666555443
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=1.2 Score=35.72 Aligned_cols=53 Identities=19% Similarity=0.057 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHhccCccc-HHHHHHHHHHHHHhCChhHHHHHHHHhhC-CCCC
Q 039398 27 SSLAKQAEAEADKAISFDYKD-AAAHILKALALDLQGFKTSALESFDLALS-IPAV 80 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~~~ 80 (172)
+.+|+-|+...+.. ..+++. ...+...|.-++..|++++|+..|-++|. ++|.
T Consensus 347 K~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred hhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 34477888766543 344443 45677789999999999999999999994 4553
No 335
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.66 E-value=0.17 Score=39.72 Aligned_cols=109 Identities=20% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCL 132 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 132 (172)
.-|..++..+++.++.-.|..++.+-|.+. ...+....+...+++ ....++|..++....-++...|....++..
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~---~~~a~~~~~~~s~~m--~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDH---HVVATLRSNQASCYM--QLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccc---hhhhhHHHHHHHHHh--hcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 347788888999999888888888777322 122222333333332 134589999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 133 LGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 133 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
.+.+|...+.++-|.+...-....+|.+..+-..
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ei 166 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEI 166 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 9999999999999999999899999999664443
No 336
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.65 E-value=0.15 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGEC 136 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 136 (172)
|+.+.+...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999999887654
No 337
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.63 E-value=1.3 Score=33.85 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=63.7
Q ss_pred HHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHH
Q 039398 38 DKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLT 117 (172)
Q Consensus 38 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (172)
++-++.+|.+.++|+.+-.-+-.. .+++..+.|++.+..-| ..+.+|.....-.. .. ++|+.-...|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-------~s~r~W~~yi~~El---~s-kdfe~VEkLF~ 77 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-------SSPRAWKLYIEREL---AS-KDFESVEKLFS 77 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-------CCcHHHHHHHHHHH---Hh-hhHHHHHHHHH
Confidence 567888999999999998877555 99999999999999888 34444433322221 22 88999999999
Q ss_pred HHHHhCCCCHHHHH-HHHHHHHHccCHHH
Q 039398 118 EAVKIQDDNVKALC-LLGECYEVKKMRDE 145 (172)
Q Consensus 118 ~~l~~~~~~~~~~~-~l~~~~~~~~~~~~ 145 (172)
+||..-=+ .+.|. .+..+....|....
T Consensus 78 RCLvkvLn-lDLW~lYl~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 78 RCLVKVLN-LDLWKLYLSYVRETKGKLFG 105 (656)
T ss_pred HHHHHHhh-HhHHHHHHHHHHHHccCcch
Confidence 99865332 34443 23334444444333
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.54 E-value=0.24 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+.++.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.42 E-value=0.11 Score=23.96 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHH--HhhCCCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFD--LALSIPA 79 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~--~~l~~~~ 79 (172)
++.++.+|..+...|++++|+..++ -+..+++
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3568889999999999999999944 6555443
No 340
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.14 E-value=1.9 Score=35.50 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
.|-.|-.++.++...... ..+++|+..|++.. ..|.-|--+...|.+|-.+|+|+|-++++.-+++.-|.++...
T Consensus 515 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 515 QFRLGITLLEKASEQGDP----RDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 345566677766633322 45999999998864 4577788899999999999999999999999999888777633
Q ss_pred hhhhHHHHHh
Q 039398 86 KEKGDALFKR 95 (172)
Q Consensus 86 ~~~~~~~~~~ 95 (172)
.-.....+.+
T Consensus 590 ~~~~~~~~~~ 599 (932)
T PRK13184 590 RLRDHLVYRL 599 (932)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 341
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.4 Score=30.94 Aligned_cols=111 Identities=21% Similarity=0.133 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
..+.-+..+.-....|++.+|...+..++...| ..+.+...++.++... |+.+.|...+...=......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-------~~~~~~~~la~~~l~~----g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAP-------ENSEAKLLLAECLLAA----GDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc-------ccchHHHHHHHHHHHc----CChHHHHHHHHhCcccchhh
Confidence 445567778888899999999999999999887 5566667777777555 99999888776532221111
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 127 -VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 127 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
...+...-..+.......+. ..+++.+..+|+|.++...+..
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~ 244 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALAD 244 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHH
Confidence 11111111233333333332 3456677889999887766643
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.04 E-value=0.38 Score=33.69 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
...|.+.+|+...++++..+|-+...+..+-.++..+|+--.+.+.|++.
T Consensus 290 le~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 290 LEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44499999999999999999999999999999999999977777777654
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.92 E-value=1.3 Score=30.98 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhccCcccH----HHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 29 LAKQAEAEADKAISFDYKDA----AAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
.+++|+..|.+++++.|... .++..+-.+.+.+++|++-++.|.+.+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 48999999999999988754 367777889999999999999888876
No 344
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.65 E-value=1.6 Score=32.24 Aligned_cols=109 Identities=10% Similarity=0.012 Sum_probs=65.4
Q ss_pred cCcccHHHHHHHHH--HHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH----HHHHhCCHHHHHHHH
Q 039398 43 FDYKDAAAHILKAL--ALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS----MNRRAGRVDSAIDDL 116 (172)
Q Consensus 43 ~~p~~~~~~~~~a~--~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~A~~~~ 116 (172)
.+|+-..+...+.. .+....+..+-++..+.... |............+..+|.+... ++.-+|+|..|++.+
T Consensus 68 ~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~--~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 68 NNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGED--PDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred hccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCC--chhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 34554443333333 33444556666666665432 21111112344445555554332 345679999999987
Q ss_pred HHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 117 TEAVKI---------QDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 117 ~~~l~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+.. .+ .+.....++..|.+|..+++|.+|++.|...+
T Consensus 146 ~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 146 ENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 22 22345678999999999999999999999877
No 345
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.27 Score=33.89 Aligned_cols=51 Identities=16% Similarity=0.065 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAV 80 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~ 80 (172)
++.|....++.+..+|.++..+--.|.+|.++|.+.-|++.+...+...|+
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 889999999999999999999999999999999999999999999888773
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.29 E-value=1.4 Score=29.70 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
+..++++...+.-++.+|.+......+-..+.-.|++++|...++-+-.+.|.+..-
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 888999999999999999999999999999999999999999999999999987653
No 347
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=3.4 Score=31.93 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHH-hhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDL-ALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
...+.-.+...+..+|.+..+..++|......|....+...+.. +....|............ +.++++...+ ++
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l----~~ 157 (620)
T COG3914 83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF-YQLGRYLKLL----GR 157 (620)
T ss_pred chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH-HHHHHHHHHh----cc
Confidence 34566777888999999999999999888888877777666665 667766444333333333 3367777555 89
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
..++...+.++....|.++.+...+
T Consensus 158 ~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 158 TAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 9999999999999988886654433
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.70 E-value=0.94 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-.
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999988765
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.49 E-value=1.7 Score=29.32 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
..+++...+.-++..|.+......+-.++.-.|+|++|...++-+-.++|
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 89999999999999999999999999999999999999999999999888
No 350
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.48 E-value=1.7 Score=32.53 Aligned_cols=25 Identities=20% Similarity=-0.069 Sum_probs=12.6
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 55 ALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
|..++..|+|.++.-+-.-..+++|
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP 493 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP 493 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3344455555555555555555444
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.37 E-value=1.8 Score=32.03 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTL--TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
+...+..++.-+|+|..|++.++.. +++..... ........+|..|-+++-+ ++|.+|++.|..++-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMl----rRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLML----RRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4455677888999999999988754 33322111 2233445567777777544 9999999999998743
No 352
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=3.5 Score=30.38 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------------CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ------------GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAE 97 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (172)
-++++..-.+.+..+|+...+|...-.++... .-+++-+.....++..+| ..-.+|.....
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~np-------ksY~aW~hR~w 117 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNP-------KSYGAWHHRKW 117 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCc-------hhHHHHHHHHH
Confidence 56777777888888998877776654443322 235566777788888877 33333433333
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----HHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 98 VKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM----RDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+.... .. .++..-+..+.++++.+|.+..+|...-.+...... ..+-+++..+++..++.|..+|..-
T Consensus 118 ~L~~~-p~-~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 118 VLQKN-PH-SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred HHHhC-CC-chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHH
Confidence 33111 01 246788889999999999998888776555444332 4667788888888899888888543
No 353
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.11 E-value=2 Score=28.13 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
.+..++..++.+...| ++..+..++.++...|+.++|.....++..+.|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 4555566677777777 489999999999999999999999999999999543
No 354
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=3.1 Score=29.14 Aligned_cols=138 Identities=12% Similarity=-0.070 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQ--GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
...+.+.-+.++..++..+|.+-..|..+-.++..- ..+..-....++.++.++..--.|.....++.. +.-...+
T Consensus 86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~- 163 (328)
T COG5536 86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNF- 163 (328)
T ss_pred chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccc-
Confidence 345577788889999999999999999988877665 678888888999999888544433333222211 1111111
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHccC------HHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLL---GECYEVKKM------RDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l---~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
..+.+-.++-..++..++.+..+|... -......|+ +++-+++...++-.+|++..+|..+.
T Consensus 164 ---S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 164 ---SDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred ---hhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 344455677777888899999998877 233333443 56667788888889999999887654
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.00 E-value=0.41 Score=23.20 Aligned_cols=27 Identities=19% Similarity=-0.039 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 51 HILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
.+.+|..|..+|+.+.|...++.++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367899999999999999999999953
No 356
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=4.7 Score=31.21 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcc------------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhh-----CCCCCCc--------c-
Q 039398 30 AKQAEAEADKAISF------------DYKDAAAHILKALALDLQGFKTSALESFDLAL-----SIPAVKT--------L- 83 (172)
Q Consensus 30 ~~~A~~~~~~~~~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-----~~~~~~~--------~- 83 (172)
|+++...|.-+... .|-..+.++.++.+....|+.+-|.....++| .+.|... .
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 77777777655443 45567899999999999999998888777776 2222111 1
Q ss_pred chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHH
Q 039398 84 TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD-NVKA 129 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~ 129 (172)
..+..-..|..+-+....+ .+.|.+.-|.++++-.+.++|. +|-+
T Consensus 334 ~~~eNR~FyL~l~r~m~~l-~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSL-AQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred cchhhHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 1122222222222223333 4449999999999999999997 6543
No 357
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.91 E-value=0.94 Score=24.79 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
|.+|++.+.+++...|+++.-.....
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 34444444445555666555433333
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.76 E-value=5.3 Score=31.40 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCC-------C---CCccchhhhhHHHHHhh----hHHHH-HHHHhCCHHHHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIP-------A---VKTLTEKEKGDALFKRA----EVKMS-MNRRAGRVDSAID 114 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~---~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~A~~ 114 (172)
+++.-|.+....+..+.|.+++.++++.- + ..+.........|+..- ..+.. +..-.+++..+..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 34444777777787778888887777321 1 11110011111111111 11111 1233488988988
Q ss_pred HHHHHHHhC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 039398 115 DLTEAVKIQ---DD------NVKALCLLGECYEVKKMRDEAKTAYE 151 (172)
Q Consensus 115 ~~~~~l~~~---~~------~~~~~~~l~~~~~~~~~~~~A~~~~~ 151 (172)
....+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 888776542 22 36778999999999999999999998
No 359
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.71 E-value=3.8 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=23.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
...++.|-.++|+..+|++.++...+..|
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 45678888999999999999988877766
No 360
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=91.42 E-value=4.3 Score=29.62 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHh
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLA 74 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 74 (172)
.....-+|+-.++.++...|.|......+..+|..+|-...|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3444788999999999999999999999999999999999999998653
No 361
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.20 E-value=3.5 Score=28.27 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 50 AHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
....+|..|+..|++++|+..++.+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566777777777777777777774
No 362
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.14 E-value=2.9 Score=27.13 Aligned_cols=90 Identities=7% Similarity=-0.067 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYK---DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
.+.|++.|.++...... -.+.++.+-.+.+..+++.....++.++-.+-.. ...|......-...|-... ..
T Consensus 52 ~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrlk~~~gL~~l----~~ 126 (177)
T PF10602_consen 52 LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRLKVYEGLANL----AQ 126 (177)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHH----Hh
Confidence 88999999998776543 3567788888899999999999999998754321 1123333333333343443 33
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 039398 107 GRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~ 124 (172)
++|..|...|-.+.....
T Consensus 127 r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 127 RDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHHHHHHHccCcCCC
Confidence 999999999987765543
No 363
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.08 E-value=2.4 Score=33.71 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch--------hhhhHHHHHhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE--------KEKGDALFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 101 (172)
.++|+++. +-+| .|..|..+|......-.++-|...|-++-.......... ...+.+- .++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~----~~~-- 747 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS----AFY-- 747 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh----hhh--
Confidence 44555443 3345 578899999888887778888777766654332111000 0111111 111
Q ss_pred HHHHhCCHHHHHHHHHHHH-------------------H---h---C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAV-------------------K---I---Q---DDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l-------------------~---~---~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
|++++|.+.|-.+- + . + .....++.++|..+..+..+++|.++|...
T Consensus 748 -----g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 -----GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred -----cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44544444443221 1 1 1 112468999999999999999999999876
Q ss_pred H
Q 039398 154 L 154 (172)
Q Consensus 154 l 154 (172)
-
T Consensus 823 ~ 823 (1189)
T KOG2041|consen 823 G 823 (1189)
T ss_pred c
Confidence 4
No 364
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=8 Score=35.11 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=77.1
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 123 (172)
+..-.+.|...|.+....|+++.|..++-.+.+.. .+.++...+.+. ...|+...|+..+++.+..+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~l----W~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLL----WQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHH----HhhccHHHHHHHHHHHHHhh
Confidence 34467899999999999999999999999888753 445566667666 44499999999999999764
Q ss_pred CCC-----------------HHHHHHHHHHHHHccCH--HHHHHHHHHHHccCCCcHH
Q 039398 124 DDN-----------------VKALCLLGECYEVKKMR--DEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 124 ~~~-----------------~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~ 162 (172)
-.+ ..+...++......+++ ++-++.|+.+.++.|....
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 222 12344455555555553 4677889999999985443
No 365
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.61 E-value=2.4 Score=28.90 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHH-HHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKI-----QDDNVK---ALCLLGECY-EVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~~-----~~~~~~---~~~~l~~~~-~~~~~~~~A~~~~~~al 154 (172)
.+.|...|++++.. .|.+|- ...+.+..+ ..+|+.++|.+.-++++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 36777777777654 566653 445556554 55899999998888777
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.51 E-value=4.3 Score=28.13 Aligned_cols=103 Identities=17% Similarity=0.018 Sum_probs=58.6
Q ss_pred hhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 24 SSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+.......+|+.+- +.-...-.+++.+..+|..+++.|++.+|..++-..-. ....+..
T Consensus 67 p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----------~~~~~~~---------- 125 (260)
T PF04190_consen 67 PERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----------PSAFAYV---------- 125 (260)
T ss_dssp TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----------HHHHHHH----------
T ss_pred chHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----------hhHHHHH----------
Confidence 34566677777777 33333345788999999999999999888888743311 1111110
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHcc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE-CYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~ 156 (172)
.-...-...-.|...+.+...+. .|...++...|...+...++.
T Consensus 126 ---------~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 126 ---------MLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---------HHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00011112334555666666665 477778888888877666654
No 367
>PF12854 PPR_1: PPR repeat
Probab=90.06 E-value=1 Score=20.22 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 126 NVKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
+...|..+-..+.+.|+.++|.+.|.+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777788888888999999888764
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=8.1 Score=30.05 Aligned_cols=130 Identities=21% Similarity=0.089 Sum_probs=83.2
Q ss_pred hcCCchhhhhHHHHHHHHHHHHhcc--------------CcccHHHH---HHHHHHHHHhCChhHHHHHHHHhhCCCCC-
Q 039398 19 SSKSKSSASSLAKQAEAEADKAISF--------------DYKDAAAH---ILKALALDLQGFKTSALESFDLALSIPAV- 80 (172)
Q Consensus 19 ~~~~~~~~~~~~~~A~~~~~~~~~~--------------~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~l~~~~~- 80 (172)
.........++.++|+-.+++++.- .|.|-..+ +..-.-+.+.|-+.-|.++.+-.++++|.
T Consensus 296 ~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e 375 (665)
T KOG2422|consen 296 FQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE 375 (665)
T ss_pred HhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC
Confidence 4445566777899999999998763 23343333 33344556789999999999999999995
Q ss_pred CccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHH
Q 039398 81 KTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEA-----VKIQDDNVKALCLLGECYEVKKM---RDEAKTAYES 152 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----l~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 152 (172)
++.........+...+ .+|+--|+.++.. +..-|+ ...-..++..|..... ...|...+.+
T Consensus 376 DPl~~l~~ID~~ALra----------reYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 376 DPLGILYLIDIYALRA----------REYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred CchhHHHHHHHHHHHH----------HhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 3334444444444333 5566666655554 223343 3344455666665555 5678888999
Q ss_pred HHccCCC
Q 039398 153 ALKIEPS 159 (172)
Q Consensus 153 al~~~p~ 159 (172)
|+...|.
T Consensus 445 Al~~~P~ 451 (665)
T KOG2422|consen 445 ALKHHPL 451 (665)
T ss_pred HHHhCcH
Confidence 9988883
No 369
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.79 E-value=5.8 Score=32.01 Aligned_cols=79 Identities=16% Similarity=0.011 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+-.++.-|...|+|+.|.+.|.++=.. ..+...| -+.|+|.+|...-.++...... ...+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~---------~dai~my----------~k~~kw~da~kla~e~~~~e~t-~~~y 827 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLF---------KDAIDMY----------GKAGKWEDAFKLAEECHGPEAT-ISLY 827 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchh---------HHHHHHH----------hccccHHHHHHHHHHhcCchhH-HHHH
Confidence 344566777778888887777665321 2222222 3337777777766665433211 2233
Q ss_pred HHHHHHHHHccCHHHHHHH
Q 039398 131 CLLGECYEVKKMRDEAKTA 149 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~ 149 (172)
...+.-+-..|+|.+|.+.
T Consensus 828 iakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHhHHhHHhhcchhhhhhe
Confidence 3344444445554444433
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.63 E-value=3.6 Score=29.09 Aligned_cols=58 Identities=17% Similarity=-0.042 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEA 119 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 119 (172)
+...+..|...|.+.+|+...++++.++| .....+..+-+.+. .+|+--.++.+|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-------L~e~~nk~lm~~la----~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-------LSEQDNKGLMASLA----TLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-------hhhHHHHHHHHHHH----HhccchhhhhHHHHH
Confidence 34457778899999999999999999998 33333333333332 226666666655543
No 371
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=14 Score=31.17 Aligned_cols=40 Identities=18% Similarity=-0.029 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+.|+.|.-.|. +..-|..++..+..+|+|..|+..-+++-
T Consensus 1208 ~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1208 KMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55555555553 24567788889999999999988877764
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.30 E-value=6.4 Score=31.50 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
.+++.++|..+..+..+++|.++|...-... ....+++.+ ..|++ ++.+...-|++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~l-----------e~f~~----LE~la~~Lpe~s 852 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYRL-----------ELFGE----LEVLARTLPEDS 852 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHHH-----------Hhhhh----HHHHHHhcCccc
Confidence 4578888888888888888888887775432 344444422 23332 233334457778
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
+.+-.+|.++...|.-++|++.|-+
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHh
Confidence 8888888888888888888887754
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.93 E-value=3.2 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.048 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+....+..++..++.+...| ++..+..++.++...|+.++|.....++..+-|
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33446677777788888888 688899999999999999999999999998776
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.91 E-value=1.4 Score=24.19 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHh
Q 039398 107 GRVDSAIDDLTEAVKI 122 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~ 122 (172)
|+|++|+.+|.++++.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8899999999888876
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.82 E-value=12 Score=29.55 Aligned_cols=131 Identities=13% Similarity=-0.048 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHhccCcc----cHHHHHHHHHHHH-HhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH
Q 039398 27 SSLAKQAEAEADKAISFDYK----DAAAHILKALALD-LQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (172)
..+..-|+.+++-+++..+- ...+.+.+|.+++ ...++++|..++++++.+... .......-.+.+.++.++
T Consensus 34 ~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~-- 110 (608)
T PF10345_consen 34 YKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIY-- 110 (608)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHH--
Confidence 34466778888887742221 3557888998888 789999999999999977643 111111222233334433
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHH--HHHHHccCHHHHHHHHHHHHccC--CCcHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDD----NVKALCLLG--ECYEVKKMRDEAKTAYESALKIE--PSWTDA 163 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 163 (172)
.+.+... |...+++.++...+ .+...+.+- ......+++..|.+.++...... +.++.+
T Consensus 111 --~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 111 --FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred --HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 5534444 99999998887544 222222332 22222379999999999888766 455554
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.35 E-value=10 Score=28.40 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTE 118 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (172)
.-.+..||..+++.+.|+.+..+.|.++|.....+...+.++ +.+.+|.+|-.-+.-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf-----------R~LeRy~eAarSami 287 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF-----------RRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345789999999999999999999999994443333333222 444666666554433
No 377
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=1.1 Score=32.27 Aligned_cols=82 Identities=18% Similarity=0.035 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
...+++.+-...+.+..|+..-..++..++ ....+++..+..+... .++++|++.+..+....|++..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~-------s~tka~~Rr~~~~~~~----~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDER-------SKTKAHYRRGQAYKLL----KNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccCh-------hhCcHHHHHHhHHHhh----hchhhhHHHHHHhhccCcchHHH
Confidence 445577888888888888888877777665 6667788888887444 99999999999999999999887
Q ss_pred HHHHHHHHHHccC
Q 039398 130 LCLLGECYEVKKM 142 (172)
Q Consensus 130 ~~~l~~~~~~~~~ 142 (172)
...+...-....+
T Consensus 346 ~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 346 EEELENVRQKKKQ 358 (372)
T ss_pred HHHHHHhhhHHHH
Confidence 7666555444433
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.71 E-value=11 Score=27.88 Aligned_cols=48 Identities=10% Similarity=-0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccCcccHH--HHH--HHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 30 AKQAEAEADKAISFDYKDAA--AHI--LKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~--~~~--~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
|..|...+......-|.... .+. ..|..++..-++++|.+.++..+..
T Consensus 147 y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 147 YGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888775333332 333 3456667888999999999988763
No 379
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.45 E-value=7.3 Score=25.69 Aligned_cols=104 Identities=15% Similarity=0.039 Sum_probs=72.3
Q ss_pred cccHHHHHHHHHHHHH-hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH-HHHhCCHHHHHHHHHHHHHh
Q 039398 45 YKDAAAHILKALALDL-QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM-NRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~ 122 (172)
...|+..+.+|..+.- ..+|++|...|..-..-+ ..+...|.+|.++..- --..++...|++.+..+-.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden--------~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~- 101 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN--------SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD- 101 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc-
Confidence 4578888888876653 568999999998877644 3444566666665431 0112678889999888766
Q ss_pred CCCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHccCC
Q 039398 123 QDDNVKALCLLGECYEVKK-------MRDEAKTAYESALKIEP 158 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~al~~~p 158 (172)
.+.+.+...+|.+++.-. +...|.+++.++..++-
T Consensus 102 -~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 102 -ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred -cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC
Confidence 456788888888876532 26688889988876653
No 380
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=86.40 E-value=1.5 Score=32.05 Aligned_cols=38 Identities=26% Similarity=0.075 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Q 039398 24 SSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGF 63 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 63 (172)
.....+...|+.+++++.. .++|+.|..+|.+++.+|+
T Consensus 328 ~~a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 328 KIAQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4566779999999999865 5678888998888887775
No 381
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=86.26 E-value=11 Score=27.65 Aligned_cols=74 Identities=22% Similarity=0.172 Sum_probs=56.8
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-DD--------NVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+..-...+.+++....+|.++++.+-+...++..-..+ |+ -....+.+|.++....++.+|...+..++..
T Consensus 170 ~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~ 249 (413)
T COG5600 170 PSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQ 249 (413)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34555667788888888899899988877665443311 22 2346899999999999999999999999988
Q ss_pred CCC
Q 039398 157 EPS 159 (172)
Q Consensus 157 ~p~ 159 (172)
.|.
T Consensus 250 c~~ 252 (413)
T COG5600 250 CPW 252 (413)
T ss_pred Chh
Confidence 887
No 382
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.05 E-value=3.9 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
.+-.++..|...|+|+-|.+.|.++
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc
Confidence 3445677788888888887777654
No 383
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.02 E-value=13 Score=28.14 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
|+.+.|.+..+ ..+++..|..||.....+|+++-|.+.|+++
T Consensus 332 g~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 332 GNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp T-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555555332 2335566666666666666666666666655
No 384
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=85.85 E-value=3.7 Score=24.84 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 132 LLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 132 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.+|..+...|++++|...|-+|+...|.-.+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 345555556666666666666666665544433
No 385
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=85.84 E-value=6.1 Score=24.20 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFD 72 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (172)
+...+.+++..+..++.++..+..+..++... +..+.+..+.
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 78899999999998888888888888888754 4456666666
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.76 E-value=4.9 Score=25.07 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=30.3
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD 144 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 144 (172)
..|++.-|.++...++..+|++..+....+.++..+|.-.
T Consensus 82 ~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 82 AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999988888888877543
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.07 E-value=4.6 Score=22.14 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=25.0
Q ss_pred cCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHH
Q 039398 20 SKSKSSASSLAKQAEAEADKAISFDYKDAAAHILK 54 (172)
Q Consensus 20 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 54 (172)
.+...+....|.+|++.+.+++...|+++.-....
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34445667778888888888888888877644433
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.81 E-value=10 Score=26.01 Aligned_cols=58 Identities=24% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 93 FKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..+|..+ ...|++++|+.+|+.+....... ..++..+..|....|+.++.+...-+.+
T Consensus 182 ~~~A~ey----~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEY----FRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHH----HHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4555555 44599999999999996553321 3566777889999999888877655443
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.58 E-value=15 Score=31.47 Aligned_cols=123 Identities=18% Similarity=0.072 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhc-------cC-cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAIS-------FD-YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~-------~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 100 (172)
+++|+..-.++.- .+ |+....+.+++...+..++...|+..+.++..+..-... ..+.......+++.++.
T Consensus 989 ~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 989 NQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred hHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 5556555544433 22 456678888999999999999999999988854321111 34455555566676665
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDD--------NVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
.+ ++++.|+.+.+.++..+-. ....+..++..+...+++..|....+....+
T Consensus 1069 ~v----~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1069 GV----EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hH----HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 55 8999999999999886421 2345667788888888887777766665543
No 390
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.45 E-value=6.6 Score=26.12 Aligned_cols=38 Identities=8% Similarity=-0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhccCcc----cHHHHHHHHHHHHHhCChhHH
Q 039398 30 AKQAEAEADKAISFDYK----DAAAHILKALALDLQGFKTSA 67 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~~~~~~~A 67 (172)
.++++..+-+++++.+. +++.+..++.++...|+++.|
T Consensus 156 ~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 156 PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443221 344444444444444444444
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.35 E-value=6.1 Score=24.65 Aligned_cols=45 Identities=7% Similarity=-0.046 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
...+.....+......|++.-|.+....++..+|++..++.....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~ 112 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKAD 112 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345677777888888999999999999999999999988766543
No 392
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=84.33 E-value=2.3 Score=17.96 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=14.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
|..+-..|.+.|++++|.+.|.+-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444556666666666666665543
No 393
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.30 E-value=1.2 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=11.2
Q ss_pred HhCChhHHHHHHHHhhC
Q 039398 60 LQGFKTSALESFDLALS 76 (172)
Q Consensus 60 ~~~~~~~A~~~~~~~l~ 76 (172)
..|+|++|..+|..+++
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33777777777776664
No 394
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.82 E-value=15 Score=33.60 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 63 FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 63 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
+..+-+-.+++++-..-.........+.+|...+++. ++.|+++.|-..+-.+.+.. -+.+....|..++..|+
T Consensus 1644 ~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAria----R~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1644 RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIA----RLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGD 1717 (2382)
T ss_pred HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHH----HhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhcc
Confidence 3556666666665211001113346788888888887 66699999999999988876 47899999999999999
Q ss_pred HHHHHHHHHHHHccC
Q 039398 143 RDEAKTAYESALKIE 157 (172)
Q Consensus 143 ~~~A~~~~~~al~~~ 157 (172)
...|+..+++.+..+
T Consensus 1718 ~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999654
No 395
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.64 E-value=19 Score=28.20 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=55.8
Q ss_pred HHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 56 LALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
..+.+....+.+....+.-+.-.. ..+...+..+.....+ +..++|-.+|++.+..+|+ +.++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 82 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEA-------LTSLAMLKKAEFLHDV----NETERAYALYETLIAQNND--EARYEYAR 82 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccc-------hhHHHHHHHhhhhhhh----hhhHhHHHHHHHHHHhCCc--chHHHHHH
Confidence 334455566666666666554332 3444455556666444 7888888888888888887 67777788
Q ss_pred HHHHccCHHHHHHHHH
Q 039398 136 CYEVKKMRDEAKTAYE 151 (172)
Q Consensus 136 ~~~~~~~~~~A~~~~~ 151 (172)
-+.+.|-..+|...++
T Consensus 83 ~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 83 RLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 8888887777777766
No 396
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.38 E-value=15 Score=26.56 Aligned_cols=101 Identities=12% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCC-CCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH--HhCCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPA-VKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV--KIQDD 125 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~ 125 (172)
.....+|.+|-..++|+.|...+... ..+. ........+...+..+|+.|..+ ++..+|..+..++- ..+..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~----~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLED----DDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHhhhccc
Confidence 46778899999999999998877543 3332 22223444556677888888666 99999998888763 33445
Q ss_pred CHHHHHH----HHHHHHHccCHHHHHHHHHHHH
Q 039398 126 NVKALCL----LGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 126 ~~~~~~~----l~~~~~~~~~~~~A~~~~~~al 154 (172)
|...... .++++-..++|-+|.+.|-+..
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 3445555666666666555544
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.26 E-value=17 Score=27.16 Aligned_cols=99 Identities=15% Similarity=-0.006 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC----
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ---- 123 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---- 123 (172)
-.++-.+|.-|...|+++.|++.|-++-.... ........+.+.-.+. -.+|+|..-..+..++.+.-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT----s~khvInm~ln~i~VS----I~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCT----SAKHVINMCLNLILVS----IYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc----chHHHHHHHHHHHHHH----HhhcchhhhhhHHHHHHhCchhhh
Confidence 34677789999999999999999999654332 1122223333222222 12266666666666655441
Q ss_pred ---C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 124 ---D-DNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 124 ---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+ -.+.+.+.-|.+...++.|+.|.++|-.+.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 012355666777777789999999887664
No 398
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.76 E-value=3.4 Score=21.96 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 52 ILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
...|.-.-+.|++++|+.+|..++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555556777777777777764
No 399
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.59 E-value=26 Score=28.89 Aligned_cols=107 Identities=19% Similarity=0.070 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCcc---------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISFDYK---------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (172)
+.+|...+.++...-|. ....--..|.+....|++++|++..+.++..-|... +.....++...|.+..
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSVLGEAAH 508 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhhhhhHHHH
Confidence 66666666655443222 234455568888999999999999999997655222 2344555566666664
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHccC
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDD----NV--KALCLLGECYEVKKM 142 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~----~~--~~~~~l~~~~~~~~~ 142 (172)
.. |++++|..+.+++.+.... .. .+.+..+.++..+|+
T Consensus 509 ~~----G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 509 IR----GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred Hh----chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 33 9999999999998877322 22 234455777888884
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.72 E-value=9.4 Score=23.22 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 039398 66 SALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120 (172)
Q Consensus 66 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 120 (172)
++.+.|..+....- -...+..|...|.++ ...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~I-----G~~~A~fY~~wA~~l----e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGI-----GTKLALFYEEWAEFL----EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTT-----STTBHHHHHHHHHHH----HHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc-----cHHHHHHHHHHHHHH----HHcCCHHHHHHHHHhhC
Confidence 56666655543110 013333444444444 33377777777776653
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.70 E-value=22 Score=27.40 Aligned_cols=93 Identities=17% Similarity=0.033 Sum_probs=55.9
Q ss_pred HHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039398 59 DLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYE 138 (172)
Q Consensus 59 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 138 (172)
+..|+...|-.....++...| ..+......+.+. ..+|.|+.+...+..+-..-.....+...+-....
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~-------~~p~~i~l~~~i~----~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQ-------QDPVLIQLRSVIF----SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCC-------CCchhhHHHHHHH----HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 345777777777777776555 2222222233333 23377888877776665554444555666666777
Q ss_pred HccCHHHHHHHHHHHHccCCCcHH
Q 039398 139 VKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 139 ~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
.+|++++|...-.-.+...-++++
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEE 392 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChh
Confidence 788888887777666655544444
No 402
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.41 E-value=7 Score=28.55 Aligned_cols=46 Identities=28% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
...-+|+-.++.++..+|.+......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999998864
No 403
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.16 E-value=22 Score=27.12 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=36.0
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+...|++.-|...|+-.+...|+++......-..+...++-+.|...|+.++.
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 34447777777777777777777766666666666667777777777775553
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.75 E-value=9.6 Score=29.29 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhh
Q 039398 52 ILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+.+|.++.++|+...|..+|..++
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444666666666666666665555
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.14 E-value=20 Score=26.10 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC--------------CCccchhhhhHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA--------------VKTLTEKEKGDALFKR 95 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~ 95 (172)
..+-+.....+++++|..+.++..++.--. --..+|...++++++... ...........++..+
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YI 277 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYI 277 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHH
Confidence 344566667889999999999988875432 224556666666663221 0000000111111111
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHH
Q 039398 96 AEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN--VKALCLLGECYEVKKMRDEAKT 148 (172)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 148 (172)
-+-..-|.+++|+..+|++.++...+..|-. ..++-++-..+....-|.+...
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234588899999999999988887732 2344555555555544444333
No 406
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=79.20 E-value=5.7 Score=29.28 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHcc
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM------------RDEAKTAYESALKI 156 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~ 156 (172)
...|+.+++++.. .++|..|..+|.++..+|+ |.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666544 5667888888888888876 67788888877654
No 407
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=24 Score=26.39 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcc--Cccc--HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHHHHHH
Q 039398 30 AKQAEAEADKAISF--DYKD--AAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 104 (172)
|++|-....+..-- +.++ +...+.+|.+..-+++|..|.+++-+++...|.... .......-|.-....+
T Consensus 225 ydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll----- 299 (493)
T KOG2581|consen 225 YDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELL----- 299 (493)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHH-----
Confidence 56665555554311 1222 445677899999999999999999999998884222 2222222222111111
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHccCCCc
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGEC--YEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
+|++.+-.-+.+..++. +...++.|..+ ......|.+-++-|..-+..+...
T Consensus 300 -~geiPers~F~Qp~~~k---sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 300 -LGEIPERSVFRQPGMRK---SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred -cCCCcchhhhcCccHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 15555433333222221 23344444332 333445666666666666555444
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.65 E-value=18 Score=24.68 Aligned_cols=103 Identities=14% Similarity=-0.011 Sum_probs=53.7
Q ss_pred HHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHH--HHhhhHHHHHHHHhCCH-HHHH-HHHHHHHHh--CCCC--HHH
Q 039398 58 LDLQGFKTSALESFDLALSIPAVKTLTEKEKGDAL--FKRAEVKMSMNRRAGRV-DSAI-DDLTEAVKI--QDDN--VKA 129 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~A~-~~~~~~l~~--~~~~--~~~ 129 (172)
.+..|+|+.|++....+|..+-.-+..+.....+. -.++.+.... ...|+. +-.. ..+..+... =|+. ++.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~-~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKA-ASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 35689999999999999965532222111111111 1112211111 122432 2111 112222111 1222 344
Q ss_pred HHHHHHHHH---------HccCHHHHHHHHHHHHccCCCcH
Q 039398 130 LCLLGECYE---------VKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 130 ~~~l~~~~~---------~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+-..|..+. ..++...|..++++|+.++|...
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 556677663 45678899999999999998753
No 409
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=78.62 E-value=4.9 Score=18.11 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHHHHH--HHHHHcc-----CHHHHHHHHHHHHc
Q 039398 128 KALCLLG--ECYEVKK-----MRDEAKTAYESALK 155 (172)
Q Consensus 128 ~~~~~l~--~~~~~~~-----~~~~A~~~~~~al~ 155 (172)
.+.+.+| .++..-. ++++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4556666 3333322 35677777776654
No 410
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=77.88 E-value=5.1 Score=17.91 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
+++.|...|++.+...|+ +..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 345555666666655544 44554444
No 411
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=77.86 E-value=4.9 Score=17.67 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHc----cCHHHHHHHHHHHHc
Q 039398 129 ALCLLGECYEVK----KMRDEAKTAYESALK 155 (172)
Q Consensus 129 ~~~~l~~~~~~~----~~~~~A~~~~~~al~ 155 (172)
+.+.+|.++..- .+..+|..+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455566555432 256667776666653
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.57 E-value=6.3 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=15.7
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhC
Q 039398 53 LKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..|.-.-..|+|++|+.+|..+++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444556777777777777765
No 413
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.53 E-value=30 Score=26.49 Aligned_cols=122 Identities=14% Similarity=-0.009 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHH--HHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDAL--FKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 107 (172)
+.+-+ -++.-++-+|++.-.|+.+-..+...|.+++-.+.|++.....| -...+| +.-|.+. . +
T Consensus 25 ~~D~l-rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-------~~~~aw~ly~s~ELA-----~-~ 90 (660)
T COG5107 25 HGDEL-RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-------IMEHAWRLYMSGELA-----R-K 90 (660)
T ss_pred CchHH-HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-------cccHHHHHHhcchhh-----h-h
Confidence 33444 56777889999999999999999999999999999999998777 223333 3222222 2 6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc----c----CHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGE-CYEVK----K----MRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~-~~~~~----~----~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
++......|.+++...-+ .+.|...-. +.... | ..-+|.++--.+.-.+|.....|..
T Consensus 91 df~svE~lf~rCL~k~l~-ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~e 157 (660)
T COG5107 91 DFRSVESLFGRCLKKSLN-LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDE 157 (660)
T ss_pred hHHHHHHHHHHHHhhhcc-HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHH
Confidence 777777888888766333 444433211 11111 1 1234444444444556665555543
No 414
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.24 E-value=32 Score=26.69 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHH
Q 039398 31 KQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVD 110 (172)
Q Consensus 31 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
+.+.+.+.......|.++...+..+..+...|+.+.|+..++..++ + ....-...+++.++-..... .+|.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~---~~kQ~~~l~~fE~aw~~v~~----~~~~ 320 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--I---RMKQVKSLMVFERAWLSVGQ----HQYS 320 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--H---HHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 5666666677777899998888999999999998888888888887 2 12223344456666666444 7888
Q ss_pred HHHHHHHHHHHhCC
Q 039398 111 SAIDDLTEAVKIQD 124 (172)
Q Consensus 111 ~A~~~~~~~l~~~~ 124 (172)
+|...+......+.
T Consensus 321 ~aad~~~~L~desd 334 (546)
T KOG3783|consen 321 RAADSFDLLRDESD 334 (546)
T ss_pred HHhhHHHHHHhhhh
Confidence 88888877766643
No 415
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.22 E-value=17 Score=25.72 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNV----KALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
.+.++|+.-|++++++.+... .++-.+-.+.+.++++++-...|.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 688999999999999988753 467777788899999998888888766
No 416
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.05 E-value=4.9 Score=17.24 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=16.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
|..+-..+.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455567777777777777766543
No 417
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=32 Score=27.33 Aligned_cols=35 Identities=17% Similarity=-0.095 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
.++..-|-.+|......+++..|.+++.++-.+..
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDLGS 697 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhh
Confidence 45667788899999999999999999999876543
No 418
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.32 E-value=21 Score=29.14 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-ChhHHHHHHHHhhCCCCCC-ccchhhhhHHHHHhhhHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG-FKTSALESFDLALSIPAVK-TLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+....+.|+.+|+++.+..|.. .+=.+++.++...| +|+...+.-.-.+.++.-- .........-|...|.+..+.
T Consensus 299 Da~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~as- 376 (1226)
T KOG4279|consen 299 DAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEAS- 376 (1226)
T ss_pred chhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhh-
Confidence 3334889999999999999963 23345555555555 3455544444343332100 001111222233333333332
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.-.++|.+|+..-+....+.|..+-.-..++.
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 23388999999999999988865544333433
No 419
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.05 E-value=12 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=20.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 132 LLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 132 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.+|..+...|+++++...+-.|+.+.|.-......+
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 345566666666666666666666665554444333
No 420
>PF15469 Sec5: Exocyst complex component Sec5
Probab=75.29 E-value=20 Score=23.30 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 141 KMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 141 ~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
...++........+.++|+...+|..|.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3566777777888888887777787664
No 421
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.08 E-value=12 Score=20.62 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=5.8
Q ss_pred HhCChhHHHHHHHHh
Q 039398 60 LQGFKTSALESFDLA 74 (172)
Q Consensus 60 ~~~~~~~A~~~~~~~ 74 (172)
..|+|++|+.+|..+
T Consensus 18 ~~g~y~eAl~~Y~~a 32 (77)
T cd02683 18 QEGRFQEALVCYQEG 32 (77)
T ss_pred HhccHHHHHHHHHHH
Confidence 334444433333333
No 422
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.05 E-value=53 Score=28.16 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
+.+..|..+|....+.|...+|++.|-++=.. ..+...-+.. .+.|.|++-+.++..+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadDp------------s~y~eVi~~a----~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADDP------------SNYLEVIDVA----SRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCCc------------HHHHHHHHHH----HhcCcHHHHHHHHHHHHHh
Confidence 46788999999999999999999998776332 1222222222 3337777777777666543
No 423
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.94 E-value=12 Score=21.96 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
+..+-.||.+|...|+.+.+.+-|+.--.+.|++..-...|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 56788899999999999999999998888889876654443
No 424
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.69 E-value=33 Score=27.54 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=33.7
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN-VKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
...++|++|...-++ .|+. +++++-.|..+....+|++|.+.|.++=
T Consensus 784 ve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred eecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 344888888776654 3443 3567778888888888888888887763
No 425
>PF13041 PPR_2: PPR repeat family
Probab=74.58 E-value=8.3 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555556666666666666665553
No 426
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=74.33 E-value=27 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD 144 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 144 (172)
-.+.|...+.+++.++|....+...+-.+-...|+++
T Consensus 114 ~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 114 ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 3588999999999999999888887777776777654
No 427
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=73.55 E-value=9.5 Score=28.47 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
..+-..+.-+|++.. -.+.++++|...........+.|..|-.|+.+ ++|.+|++.|..++-.
T Consensus 239 ~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmm----rryadai~~F~niLly 301 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMM----RRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344455666788544 45556777755554444444457778777555 9999999999888643
No 428
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.72 E-value=9 Score=21.25 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHhC
Q 039398 107 GRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~ 123 (172)
+.|+.|.+...+++..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 44667777777766654
No 429
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=71.95 E-value=32 Score=24.28 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 111 SAIDDLTEAVKIQDDNVKALCLLGECYEVKK----------------------MRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 111 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.....++.=++..|++..++..+|..+.... -.+.|...+.+++.++|....+...+.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3556667778889999999888888776542 167899999999999999999888776
Q ss_pred hh
Q 039398 169 RL 170 (172)
Q Consensus 169 ~l 170 (172)
++
T Consensus 141 ~~ 142 (277)
T PF13226_consen 141 NI 142 (277)
T ss_pred HH
Confidence 55
No 430
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=71.08 E-value=17 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHHHcc-CHHHHHHHHHHHHccCCCcHHHH
Q 039398 132 LLGECYEVKK-MRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 132 ~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.+|..+...| +.+++...|-+|+...|.=.+..
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666666 66666666666666666544433
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.02 E-value=13 Score=19.39 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 116 LTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 116 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
+-..++....+..-+...-.-+...|++++|.+++....
T Consensus 12 ~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 12 LIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444555556666667788888888888887765
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.19 E-value=48 Score=25.21 Aligned_cols=31 Identities=19% Similarity=-0.024 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+++..|..+|......|+++-|..+|+++-.
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3566666667666666777777666666643
No 433
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.88 E-value=43 Score=24.53 Aligned_cols=142 Identities=13% Similarity=0.031 Sum_probs=84.0
Q ss_pred chhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------------------------CChhHHHHHHHHhhC
Q 039398 23 KSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQ--------------------------GFKTSALESFDLALS 76 (172)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~~l~ 76 (172)
.....++-++|+..-.-...+-|..|+++-..+...++. +-.+++...+.+++.
T Consensus 205 ~~~ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 205 EPTRADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALA 284 (415)
T ss_pred CcccchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHH
Confidence 344677789999999999999999999988888877653 224566666777664
Q ss_pred CCCCCccchhhhhHHHHHhhhHHHHH-HHHhCCHHHHHHHHHHHHHhCC-------------------------------
Q 039398 77 IPAVKTLTEKEKGDALFKRAEVKMSM-NRRAGRVDSAIDDLTEAVKIQD------------------------------- 124 (172)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~~------------------------------- 124 (172)
..... .+.-.+.+ +.++..- ....-+|..-..+|.-.....|
T Consensus 285 ~~~pG--PYqlqAAI----aa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~ 358 (415)
T COG4941 285 SRRPG--PYQLQAAI----AALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLAR 358 (415)
T ss_pred cCCCC--hHHHHHHH----HHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcc
Confidence 32100 00000000 0000000 0000122222222222222211
Q ss_pred ----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 125 ----DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 125 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.....+-..|..+.++|+.++|...|.+++.+.++..+......++
T Consensus 359 ~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 359 PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2334566678999999999999999999999999988766555543
No 434
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=68.52 E-value=18 Score=21.94 Aligned_cols=29 Identities=28% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
-..+|..+...|++++|..+|-+++...|
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 35679999999999999999999999876
No 435
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=68.43 E-value=39 Score=26.52 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCcHHHHHHHHhh
Q 039398 112 AIDDLTEAVKI-----QDDNVKALCLLGECYEVKKMRDEAKTAYESALKI------EPSWTDAQAALDRL 170 (172)
Q Consensus 112 A~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~l 170 (172)
++..|.+++.. +....-.+..+|-.+++.+++.+|+..|..+-.. ..+|.++++.+..+
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34444444433 2344567888999999999999999999887533 23556666655443
No 436
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.10 E-value=27 Score=21.86 Aligned_cols=41 Identities=15% Similarity=-0.064 Sum_probs=29.4
Q ss_pred HHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 37 ADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 37 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
+......+..+|..+..+|..|.+.|+..++-+.+.++.+.
T Consensus 109 ~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 109 YNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444345568999999999999999999999999999864
No 437
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=67.63 E-value=45 Score=24.28 Aligned_cols=82 Identities=12% Similarity=0.004 Sum_probs=52.0
Q ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh--CCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 32 QAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL--SIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 32 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.-++.+.+-....|+..++.+..+.-.++.|+|..|..++-... ..+| ........| |.+...+ . +.+|
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~----d~n~lsalw---GKlASEI-L-~qnW 183 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDP----DRNYLSALW---GKLASEI-L-TQNW 183 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc----chhhHHHHH---HHHHHHH-H-HhhH
Confidence 34556666667788889999999999999999999987754433 3222 111112222 3332222 1 2688
Q ss_pred HHHHHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKI 122 (172)
Q Consensus 110 ~~A~~~~~~~l~~ 122 (172)
+.|.+.+.+.-+.
T Consensus 184 d~A~edL~rLre~ 196 (432)
T KOG2758|consen 184 DGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 8998888776543
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.71 E-value=26 Score=21.27 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKI--QDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
.+.+.+.|...... ....+..|...|..+...|++++|.+.|+.++
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34777888777654 45678889999999999999999999998764
No 439
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.68 E-value=65 Score=25.75 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+-+...+.++++.+.++. +-.+ .+..+.|+++.|.....++-. ..-|-.+|++.... +++
T Consensus 623 Fle~~g~~e~AL~~s~D~-d~rF---elal~lgrl~iA~~la~e~~s------------~~Kw~~Lg~~al~~----~~l 682 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDP-DQRF---ELALKLGRLDIAFDLAVEANS------------EVKWRQLGDAALSA----GEL 682 (794)
T ss_pred HhhhccchHhhhhcCCCh-hhhh---hhhhhcCcHHHHHHHHHhhcc------------hHHHHHHHHHHhhc----ccc
Confidence 455566667787776643 2233 344577888888877666532 22355566655333 888
Q ss_pred HHHHHHHHHHHHh--------CCCCHHHH------------HHHH-HHHHHccCHHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKI--------QDDNVKAL------------CLLG-ECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 110 ~~A~~~~~~~l~~--------~~~~~~~~------------~~l~-~~~~~~~~~~~A~~~~~~al 154 (172)
..|.+++.++... ...+.+.+ ++++ .+++..|+++++.+.+...-
T Consensus 683 ~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 683 PLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 8888888887443 22333322 3333 46777888888888876653
No 440
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=66.44 E-value=10 Score=16.36 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039398 113 IDDLTEAVKIQDDNVKALCLLGECYE 138 (172)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~l~~~~~ 138 (172)
+++...++..+|.+..+|..+--+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45667777778888777776655543
No 441
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.04 E-value=32 Score=21.56 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+|+-++--+.+......+..+++.+..+|.+|.+.|+..++-+.+.+|.+.
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45577777667777776666677999999999999999999999999998754
No 442
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.87 E-value=50 Score=32.00 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC----HHHHHHHHHHHHHh
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR----VDSAIDDLTEAVKI 122 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~~ 122 (172)
.++.+...|....+.|+.++|-..|..|++++. ..+.+|...|.+....+.+.+. -..|+.+|-++...
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~-------~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~ 2883 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD-------GLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARL 2883 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcc
Confidence 456777889999999999999999999999875 6688888888887765444333 25667777777665
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 123 QDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
.. +..+.-.++.+++-+. +++|.....++
T Consensus 2884 ~~-~skaRk~iakvLwLls-~dda~~~l~~~ 2912 (3550)
T KOG0889|consen 2884 YN-SSKARKLIAKVLWLLS-FDDSLGTLGDV 2912 (3550)
T ss_pred cc-chhhHHHHHHHHHHHH-hccccchHHHH
Confidence 42 3455556666555443 33333333333
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.72 E-value=38 Score=22.40 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=27.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 133 LGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 133 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
...++.+.|.+++|.+.+++... +|++......|..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~ 152 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHH
Confidence 34578889999999999999888 7777665555443
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=55 Score=23.89 Aligned_cols=106 Identities=12% Similarity=-0.016 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
-.+++..+|..|.+.|+-+.|.+.+.+..+-.-. .....+..-....+|.++... .-..+.++-.+..++.. .+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-~g~kiDVvf~~iRlglfy~D~----~lV~~~iekak~liE~G-gD 176 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-LGHKIDVVFYKIRLGLFYLDH----DLVTESIEKAKSLIEEG-GD 176 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHhhccH----HHHHHHHHHHHHHHHhC-CC
Confidence 4678999999999999999999998887642210 001112222335566666333 22334444444444442 33
Q ss_pred HH----HHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 127 VK----ALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 127 ~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
++ .-...|.......+|.+|...|-.++....
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33 334457777778889999999988875543
No 445
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.64 E-value=21 Score=19.52 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=12.2
Q ss_pred HHHHHhCChhHHHHHHHHhhC
Q 039398 56 LALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 56 ~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.-.-..|+|++|+.+|..+++
T Consensus 14 v~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 333445666666666666653
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=61.63 E-value=45 Score=24.43 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 110 DSAIDDLTEAVKIQDD---NVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
++....+...+..-|+ .+..|..++.+....|.+++.+..|++|+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 4666677777777675 3578999999999999999999999999977654
No 447
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=61.03 E-value=13 Score=15.84 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=15.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
|..+-.++.+.|+++.|...|..-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566666777777776666543
No 448
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.17 E-value=37 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 039398 107 GRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~ 126 (172)
++...|+.+++++++++|+.
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 57789999999999999874
No 449
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=60.05 E-value=26 Score=18.89 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHhCChhHHHHHHHHhhC
Q 039398 57 ALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 57 ~~~~~~~~~~A~~~~~~~l~ 76 (172)
-.-..|++++|+.+|..+++
T Consensus 15 ~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 15 KEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33344666666666666653
No 450
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.49 E-value=72 Score=24.39 Aligned_cols=26 Identities=38% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+..-|.+.+.+|+-++|.+.++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44569999999999999999998863
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.83 E-value=73 Score=23.68 Aligned_cols=53 Identities=17% Similarity=-0.103 Sum_probs=39.6
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHccCHHHHHHHHHHHHcc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVK--ALCL--LGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
.+.++|..|...+......-|.... .+.. .|..++..-++++|.+.++..+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3449999999999999886344333 3333 455677888999999999988765
No 452
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.15 E-value=92 Score=24.63 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 22 SKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+......+|.+|+..-+.-.. ......+..+|-.+++.++|.+|+..+-.+-
T Consensus 294 ~r~~~~~l~~~AI~sa~~~Y~--n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 294 GRPTPLELFNEAISSARTYYN--NHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp TS--HHHHHHHHHHHHHHHCT--T--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc--CCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665555433 2344567888999999999999999998875
No 453
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=57.53 E-value=40 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 039398 107 GRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~ 125 (172)
|..-+|+..|..|+++.|+
T Consensus 33 G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 33 GSLYDAINFYRDALQIVPD 51 (366)
T ss_pred CcHHHHHHHHHhhhcCCch
Confidence 5555555555555555444
No 454
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.47 E-value=12 Score=26.36 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHH------HHhCChhHHHHHHHHhhCCCCCCccchhhh---hHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALAL------DLQGFKTSALESFDLALSIPAVKTLTEKEK---GDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 100 (172)
+..-+...++.++.||.|...|..+-.+. .....+....++-...|..++.....|... ...+++.|.+-
T Consensus 126 ~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vi- 204 (328)
T COG5536 126 WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVI- 204 (328)
T ss_pred cchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccc-
Confidence 55666677888999999988887765555 444555666777777778777555444444 22233333332
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.+ .-+++-+++....+..+|++..+|..+--
T Consensus 205 ---sq-k~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 205 ---SQ-KYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred ---hH-HHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 11 22566777777788889999888776543
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.46 E-value=11 Score=30.49 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-CC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-DD 125 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~ 125 (172)
.++...++-..|....+|+.-++..+..-.+-.... ......+.|..+-.+..- .+-|+-++|+...-.+++.+ |-
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~--vve~~nv~f~YaFALNRR-Nr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK--VVETHNVRFHYAFALNRR-NRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh--hhccCceEEEeeehhccc-CCCccHHHHHHHHHHHHHhcCCC
Confidence 577888888899999999988887777655421111 111111122222111111 12278889998888888775 44
Q ss_pred CHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccCCCc
Q 039398 126 NVKALCLLGECYEVK---------KMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~ 160 (172)
.++.++.-|.+|..+ +..+.|+++|+++++..|.-
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 567777777777543 45678999999999999964
No 456
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.71 E-value=1.1e+02 Score=25.09 Aligned_cols=92 Identities=27% Similarity=0.177 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhccCcc----cHHHHHHHHHHHHH--hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 29 LAKQAEAEADKAISFDYK----DAAAHILKALALDL--QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
.+..+.--|..++.+-|. ......+.+.++.. .|+|..++.-..-++...| ....+++..+..|.+.
T Consensus 68 d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p-------~i~~~Ll~r~~~y~al 140 (748)
T KOG4151|consen 68 DYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP-------RISKALLKRARKYEAL 140 (748)
T ss_pred hhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc-------hHHHHHhhhhhHHHHH
Confidence 377777777777777663 34456666777665 4688888888888888776 5666677777777666
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALC 131 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 131 (172)
+..+-|++.+.-.....|++..+-.
T Consensus 141 ----~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 141 ----NKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred ----HHHHHHHHHHHHHhcCCCCcchHHH
Confidence 7788888887777888888854433
No 457
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.68 E-value=1.2e+02 Score=25.31 Aligned_cols=118 Identities=11% Similarity=-0.003 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
.++-+.-++.-+.+++.+...+..+-.+++..|++++-...-..+..+.|..+..|...... ...+... +..
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d-------~~~mt~s-~~~ 166 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKD-------ELSMTQS-EER 166 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHH-------HHhhccC-cch
Confidence 45566777778888888888999999999999999888777777777776333333332222 2222123 677
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHccCHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGEC-------YEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~-------~~~~~~~~~A~~~~~~al~~ 156 (172)
.++...|.+++.-. .++..|...+.. +...++++.-...|.+++..
T Consensus 167 ~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 167 KEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred hHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 88888999988653 344555444433 34445677777777777754
No 458
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.42 E-value=25 Score=25.83 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 101 (172)
.-+...|.-.+.++++++|...|..+..+..... ........++|..|..++.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLe 95 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLE 95 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999997654322 2455666677777766654
No 459
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.74 E-value=42 Score=19.69 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
......|......|++..|.+...++-+..+
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3446667778888888888888888866543
No 460
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.70 E-value=1.4e+02 Score=29.37 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
++.+...|..+.+.|+.++|-..|..|++++-.-+.+|.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~ 2850 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWA 2850 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHH
Confidence 445556677777777777777777777766665555553
No 461
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=54.49 E-value=62 Score=21.58 Aligned_cols=113 Identities=18% Similarity=0.103 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CC--hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH-
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ-----GF--KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (172)
+..|++.+..+-. .+.+.+...+|.++..- ++ .++|.+++.++..+. .+.+.+.+...+..
T Consensus 89 l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~---------~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 89 LSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE---------DGEACFLLSTMYMGG 157 (248)
T ss_pred HHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC---------CchHHHHHHHHHhcc
Confidence 7788888888765 56788899999888753 23 678999999998874 33334444433331
Q ss_pred -------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHc
Q 039398 102 -------------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK----KMRDEAKTAYESALK 155 (172)
Q Consensus 102 -------------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~ 155 (172)
.+.-.++-+.|..+--++-++ +++.+.-++...|..- ++-++|..+-.++.+
T Consensus 158 ~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 158 KEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred chhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 122235667777777666666 3455666666665432 235566665555543
No 462
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.63 E-value=1.1e+02 Score=24.37 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=45.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+.+..+.+....+.-+.-...+....+..+..+...+..++|...|++.+..+|++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEAR 77 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchH
Confidence 3366777777666655555556677788888999999999999999999999999654
No 463
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=51.90 E-value=78 Score=21.94 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH-HHHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKI-----QDDNVK---ALCLLGEC-YEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~~-----~~~~~~---~~~~l~~~-~~~~~~~~~A~~~~~~al 154 (172)
.+.|...|+.++.+ .|.+|- ...+.+.. |.-+++.++|.+.-++++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888764 466553 34444554 445688888887666655
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.37 E-value=73 Score=23.38 Aligned_cols=50 Identities=16% Similarity=-0.041 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 30 AKQAEAEADKAISFDYK---DAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
.++....+...+..-|+ .+..|..+|.+.-..|.+++.+..|+.|+....
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 34555556666666675 456789999999999999999999999997654
No 465
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.32 E-value=60 Score=24.01 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQ--------DDNVKALCLLGECYEVKKMRDEAKT 148 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~ 148 (172)
++++.|...|..+..+. -++.++++..|..++..++++..+-
T Consensus 55 ~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 55 NDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999987763 2346788999999999888776653
No 466
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=49.00 E-value=63 Score=20.03 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
-+.+.|..+|..+++.+|+...++..+-...
T Consensus 90 le~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 90 LEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp S-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 4456666666666666666666555554443
No 467
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.90 E-value=31 Score=20.40 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
.-+..++..|...|.+++|.+.+.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3567789999999999999999998776
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.59 E-value=1.1e+02 Score=22.21 Aligned_cols=105 Identities=8% Similarity=-0.106 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
..+++.++|..|.+.++.+.+.+.+.+.++-.-... ...+.--+-..+|.++... .=.++.++.....++... +
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~----~vV~e~lE~~~~~iEkGg-D 187 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDR----KVVEESLEVADDIIEKGG-D 187 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccH----HHHHHHHHHHHHHHHhCC-C
Confidence 467999999999999999999999888774221000 0111111224455555222 334566666666666533 2
Q ss_pred HH----HHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 127 VK----ALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 127 ~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
++ .-...|.......+|.+|...+-..+...
T Consensus 188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 32 33445777777788999988888777543
No 469
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.50 E-value=48 Score=18.21 Aligned_cols=26 Identities=4% Similarity=-0.169 Sum_probs=16.5
Q ss_pred CchhhhhHHHHHHHHHHHHhccCccc
Q 039398 22 SKSSASSLAKQAEAEADKAISFDYKD 47 (172)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 47 (172)
.......+|.+|++.|..++...|+.
T Consensus 21 ~y~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 21 RFQEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 34455566777777777777666654
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.35 E-value=91 Score=21.41 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhc-----cCcccHH---HHHHHHHHH-HHhCChhHHHHHHHHhhC
Q 039398 29 LAKQAEAEADKAIS-----FDYKDAA---AHILKALAL-DLQGFKTSALESFDLALS 76 (172)
Q Consensus 29 ~~~~A~~~~~~~~~-----~~p~~~~---~~~~~a~~~-~~~~~~~~A~~~~~~~l~ 76 (172)
..++|...|++|+. +.|.+|. ...+.+..+ -..|+.++|+...++++.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555555543 3455553 344445444 348999999999888874
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.91 E-value=1.6e+02 Score=23.83 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
++++.....+...-....+.....+.+|..+...|+.++|...|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877777765443445678889999998889999999999999854
No 472
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.83 E-value=1.6e+02 Score=25.75 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.2
Q ss_pred HHHhCChhHHHHHHHHh
Q 039398 58 LDLQGFKTSALESFDLA 74 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~ 74 (172)
|...|+.++|+..|+.+
T Consensus 962 Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 962 YERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 33344444444444433
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.61 E-value=1.3e+02 Score=22.82 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc---chhhhhHHHHHhhhHHH-----HHHHHh---CCHHHHHHHHHHH
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAVKTL---TEKEKGDALFKRAEVKM-----SMNRRA---GRVDSAIDDLTEA 119 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~A~~~~~~~ 119 (172)
.+..|.-++..|++.+|+..|+..|..-|--.. .......-+..+.+-|. .+.++. ...++..+.++-+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 444677888999999999999998843221111 11111111222222221 111110 1112222222221
Q ss_pred H-----HhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 120 V-----KIQDDNVKALCLLG-ECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 120 l-----~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
. .+.|.+...-...| ...++.++|..|..+-++.+++.|....+
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 1 11222222222222 24567899999999999999999987653
No 474
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.38 E-value=66 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHHHHHhC-ChhHHHHHHHHhhCCCC
Q 039398 52 ILKALALDLQG-FKTSALESFDLALSIPA 79 (172)
Q Consensus 52 ~~~a~~~~~~~-~~~~A~~~~~~~l~~~~ 79 (172)
..+|..+...| +..++..+|-++|...|
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~ 122 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYP 122 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 45799999999 99999999999998876
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.39 E-value=2e+02 Score=24.49 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc---chhhhhHHHHHhhhHHHH-----H-HHHh--CCHHHH--HHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTL---TEKEKGDALFKRAEVKMS-----M-NRRA--GRVDSA--IDDL 116 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~-~~~~--~~~~~A--~~~~ 116 (172)
-....|.-+...|++.+|++.|+..|-.-|.-.. .....+..+...+.-|.. . -+++ ...+.+ +..|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 4456677788899999999999998854441111 111222223333322221 0 0111 222333 2222
Q ss_pred HHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHH
Q 039398 117 TEAVKIQDDNVK-ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQA 165 (172)
Q Consensus 117 ~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 165 (172)
-.-..+.|...- ++..--.++++.+++..|..+-.+.+++.|..+.+..
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 222233343322 3333335788999999999999999999998776543
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.87 E-value=49 Score=17.29 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
+..|..+++.|+|=+|-+.++......+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~ 30 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAP 30 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCC
Confidence 3457778899999999999999987544
No 477
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=43.44 E-value=40 Score=16.17 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEA 146 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A 146 (172)
.|..++..+|++...+...+..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46678888999999999999999999998654
No 478
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=41.79 E-value=1.5e+02 Score=22.24 Aligned_cols=67 Identities=7% Similarity=-0.183 Sum_probs=46.6
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCC-CCCcc-chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 039398 55 ALALDLQGFKTSALESFDLALSIP-AVKTL-TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
-.+|+++++++-+...++..-..+ |+... .........|.+|.++.-. .++.+|...++.++...|.
T Consensus 184 ~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~----en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 184 FQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLN----ENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHH----HhHHHHHHHHHHHHHhChh
Confidence 457888999999888777665422 22222 2223444568888888544 8889999999999988776
No 479
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.49 E-value=85 Score=19.36 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhhCCCCC----Cccchhh----hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH--
Q 039398 51 HILKALALDLQGFKTSALESFDLALSIPAV----KTLTEKE----KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV-- 120 (172)
Q Consensus 51 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-- 120 (172)
+..+|...++.+++-.++-+|++++.+... ......+ .....-++++++ +.+|+.+=.+++++-+-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FW----R~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFW----RSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHH----HHcCChHHHHHHHHHHHHH
Confidence 456788888889999999999998844321 1111111 122234566666 66699998888887654
Q ss_pred --HhCCCC
Q 039398 121 --KIQDDN 126 (172)
Q Consensus 121 --~~~~~~ 126 (172)
.+-|..
T Consensus 80 VltLiPQC 87 (140)
T PF10952_consen 80 VLTLIPQC 87 (140)
T ss_pred HHHhccCC
Confidence 445544
No 480
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=41.22 E-value=64 Score=17.90 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDL 73 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (172)
+..+.++|...+.-.-.+-|+.-.-...-+.+++-+|+-..|+..+..
T Consensus 18 NH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 18 NHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred ccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 344577888888777777787777788889999999999999998876
No 481
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.12 E-value=1.6e+02 Score=22.48 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNV-------KALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
.-+|+++. -.+.+.++|... .+-+..|.+|..+++|.+|+..|-.++
T Consensus 246 ~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 246 ILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 33477444 344556665431 123788999999999999999998776
No 482
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=40.24 E-value=2.1e+02 Score=23.55 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHH---HHccCCCcHHHHHHH
Q 039398 123 QDDNVKALCLLGECYEVKKMRDEAKTAYES---ALKIEPSWTDAQAAL 167 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~l 167 (172)
.|.+..-+..-|---...|++..+..+... +..+-|+-..+...|
T Consensus 649 PPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml 696 (843)
T KOG1076|consen 649 PPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDML 696 (843)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHH
Confidence 567777777777777889999999987654 445556655544433
No 483
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=1.5e+02 Score=21.50 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhccCc--------ccHHHHHHHHHHHHHhCChhHHHH-------------------HHHHhhCCCCCC
Q 039398 29 LAKQAEAEADKAISFDY--------KDAAAHILKALALDLQGFKTSALE-------------------SFDLALSIPAVK 81 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~-------------------~~~~~l~~~~~~ 81 (172)
.+++|+..|.+.+.... ....+...++.+|...|++..--+ ..+..++.-|..
T Consensus 18 ~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~ 97 (421)
T COG5159 18 DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYS 97 (421)
T ss_pred hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCC
Confidence 39999999999887732 134578889999999988753211 222223222222
Q ss_pred ccchhhhhHHHHHhhhHH----------------HHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 039398 82 TLTEKEKGDALFKRAEVK----------------MSMNRRAGRVDSAIDDLTEAVKI------QDDNVKALCLLGECYEV 139 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~l~~~~~~ 139 (172)
+.........+...-.+. ...+.+.|.|.+|+......+.. .|.-...+..-..+|..
T Consensus 98 ~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~ 177 (421)
T COG5159 98 SDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE 177 (421)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH
Confidence 222222111111100000 01244558888888887776543 23344566667777877
Q ss_pred ccCHHHHHHHHHHHH
Q 039398 140 KKMRDEAKTAYESAL 154 (172)
Q Consensus 140 ~~~~~~A~~~~~~al 154 (172)
..+...+...+..|.
T Consensus 178 irnv~KskaSLTaAr 192 (421)
T COG5159 178 IRNVSKSKASLTAAR 192 (421)
T ss_pred HHhhhhhhhHHHHHH
Confidence 777777776666554
No 484
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=38.55 E-value=74 Score=21.62 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
-+++++..|.++..+|+..+|+..++++-.
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 478999999999999999999999998763
No 485
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.49 E-value=1.5e+02 Score=25.83 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=12.0
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 039398 134 GECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 134 ~~~~~~~~~~~~A~~~~~~a 153 (172)
|.+|...|+.++|++.|+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 45556666666666666554
No 486
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=38.30 E-value=82 Score=18.27 Aligned_cols=31 Identities=26% Similarity=0.170 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.++...+.-|.-..+.|+|++|...++++-+
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566667777777888999999888887753
No 487
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=37.98 E-value=68 Score=17.24 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH---hcCCchhhhhHHHHHHHHHHHHhccCcc
Q 039398 8 VIGAQLLAQAR---SSKSKSSASSLAKQAEAEADKAISFDYK 46 (172)
Q Consensus 8 ~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 46 (172)
..|..++.++. ...........|.+|++.|..++...|+
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34444444443 2333344556666777777776666654
No 488
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=37.82 E-value=83 Score=18.18 Aligned_cols=31 Identities=26% Similarity=0.111 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.++...+..|.-..+.|+|++|...+.++-+
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777777888888888888877743
No 489
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=37.32 E-value=86 Score=18.26 Aligned_cols=32 Identities=25% Similarity=0.074 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..+....+.-|.-..+.|+|++|.+.+..+-+
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777778889999999888877743
No 490
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=36.87 E-value=1.6e+02 Score=21.35 Aligned_cols=54 Identities=22% Similarity=0.098 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHHHhccCcc-----------------cHHHHHHHHHHHHHhC-----ChhHHHHHHHHhhCC
Q 039398 24 SSASSLAKQAEAEADKAISFDYK-----------------DAAAHILKALALDLQG-----FKTSALESFDLALSI 77 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~-----------------~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~l~~ 77 (172)
.+....++..+..++.++..-|. ...+...++.++...+ ++++|+.....++..
T Consensus 135 ~s~~evy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 135 DSQEEVYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 33555678888888887765332 1335667788899988 899999999999864
No 491
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=36.73 E-value=91 Score=18.36 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..++...+.-|.-..+.|+|++|...+..+-+
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777778888889999999988888754
No 492
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=36.05 E-value=2e+02 Score=22.19 Aligned_cols=118 Identities=14% Similarity=-0.016 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC----C-------Cc--cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPA----V-------KT--LTEKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~----~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
....+.-|...+..+++.+++..++++|+..- + .. ...+......-..|-.+. ..-|.+-+-..
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~---a~fg~~le~a~ 107 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYL---AIFGHLLERAA 107 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHH---HHHHHHHHHHH
Confidence 45666778888888999999998888884211 0 00 000000000000010000 00133333334
Q ss_pred HHHHHHHh---CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 115 DLTEAVKI---QDDN----------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 115 ~~~~~l~~---~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++.++..- .|.+ -..+..|=.+|.+.|+..+|++.-...+-.+|++..+...+.
T Consensus 108 Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ld 174 (471)
T KOG4459|consen 108 CLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLD 174 (471)
T ss_pred HHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHH
Confidence 44444332 1221 145667778899999999999999999999999998887764
No 493
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.37 E-value=1.4e+02 Score=19.93 Aligned_cols=98 Identities=11% Similarity=-0.048 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCcc--c--HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYK--D--AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~--~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
-..|+..|..+-.-.|. - -.+...-+.++...|-|+.-....+..-.- ..+....+--.+|... .+
T Consensus 110 ta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d------~n~mR~sArEALglAa----~k 179 (221)
T COG4649 110 TAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD------GNPMRHSAREALGLAA----YK 179 (221)
T ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC------CChhHHHHHHHHhHHH----Hh
Confidence 67889999887655432 2 234566678888999998877666554321 1112333333344333 44
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYE 138 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 138 (172)
.|++.+|...|.++.. +.+.+....+.+.+..
T Consensus 180 agd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 180 AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 4999999999988776 5666676666666554
No 494
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=34.40 E-value=99 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+++++..|.++..+|+..+|++.+.++..
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67888999999999999999988888764
No 495
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.30 E-value=1.8e+02 Score=20.94 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=38.9
Q ss_pred chhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHh
Q 039398 23 KSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLA 74 (172)
Q Consensus 23 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 74 (172)
.+........|+++-.+--.-.-.+|..+..+|..++..++..+|..+|-.+
T Consensus 102 eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 102 EPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 3445566677777665543444568999999999999999999999998544
No 496
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=34.13 E-value=1.1e+02 Score=18.47 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+..++...+.-|.-..+.|+|++|...+..+-+
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777888888889999999999999888754
No 497
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=34.11 E-value=80 Score=16.90 Aligned_cols=46 Identities=22% Similarity=0.113 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHH
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDL 73 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 73 (172)
.+..+|...+.-.-.+-|+...-...-+.+++-+|+...|...+..
T Consensus 7 gL~~ea~aIL~alP~Li~D~~~r~~c~alllfGL~~~~~Al~~L~~ 52 (66)
T PF06287_consen 7 GLLKEARAILNALPQLIPDEEDRAVCEALLLFGLGEQAAALQLLAD 52 (66)
T ss_pred ccHHHHHHHHHhchhhcCCHhHHHHHHHHHHHHcCChHHHHHHHhC
Confidence 4466777777776667777777778889999999999999988866
No 498
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=33.98 E-value=88 Score=17.48 Aligned_cols=18 Identities=0% Similarity=0.115 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhCCCCHHH
Q 039398 112 AIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 112 A~~~~~~~l~~~~~~~~~ 129 (172)
++....+.++.+|++|..
T Consensus 26 ~l~~Al~~l~~~pdnP~~ 43 (80)
T PRK15326 26 QVTEALDKLAAKPSDPAL 43 (80)
T ss_pred HHHHHHHHhhcCCCCHHH
Confidence 333333344455555544
No 499
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=33.95 E-value=85 Score=17.19 Aligned_cols=49 Identities=16% Similarity=-0.082 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
.++..+|...+.-.-.+-|+.-.-....+.+++-+++-.+|+..+...-
T Consensus 7 H~L~~qa~aiLnvlPqLIpD~~~r~vC~alllfGLne~~~A~~~La~~~ 55 (75)
T PRK15356 7 HSLISQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEPLKAAKILSDID 55 (75)
T ss_pred cchHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 3456677777777777778877778889999999999999999887654
No 500
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.89 E-value=1.2e+02 Score=18.57 Aligned_cols=42 Identities=7% Similarity=-0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 111 SAIDDLTEAVKIQ--DDNVKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 111 ~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
+..+.|.-..... ...+..+...|..+...|++.+|.+.|+.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455565555443 34566777889999999999999998864
Done!