Query 039398
Match_columns 172
No_of_seqs 286 out of 1040
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 15:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 6.3E-25 2.2E-29 133.3 13.8 121 39-170 4-124 (126)
2 4ga2_A E3 SUMO-protein ligase 99.9 1.3E-25 4.5E-30 140.2 10.9 130 30-170 13-143 (150)
3 4gyw_A UDP-N-acetylglucosamine 99.9 2E-23 6.7E-28 158.3 17.0 130 30-170 25-154 (723)
4 3gyz_A Chaperone protein IPGC; 99.9 1.5E-23 5E-28 130.8 12.5 119 33-162 21-139 (151)
5 2pl2_A Hypothetical conserved 99.9 7.7E-23 2.6E-27 134.9 16.1 152 6-169 8-193 (217)
6 2h6f_A Protein farnesyltransfe 99.9 5.1E-23 1.7E-27 146.1 14.3 129 30-169 113-242 (382)
7 3vtx_A MAMA; tetratricopeptide 99.9 3.1E-22 1.1E-26 128.5 16.7 146 6-162 8-176 (184)
8 2pl2_A Hypothetical conserved 99.9 1.4E-22 4.8E-27 133.7 15.0 125 30-154 55-212 (217)
9 3urz_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 130.7 15.1 142 6-170 7-199 (208)
10 4i17_A Hypothetical protein; T 99.9 2.2E-22 7.5E-27 133.4 13.6 138 30-171 58-224 (228)
11 4i17_A Hypothetical protein; T 99.9 1.2E-21 4.2E-26 129.7 17.0 143 6-170 10-162 (228)
12 2vgx_A Chaperone SYCD; alterna 99.9 5.1E-22 1.7E-26 123.6 12.5 119 35-164 8-126 (148)
13 2xcb_A PCRH, regulatory protei 99.9 8E-22 2.7E-26 121.8 10.5 122 35-167 5-126 (142)
14 2h6f_A Protein farnesyltransfe 99.9 3E-21 1E-25 137.1 13.7 129 30-169 148-282 (382)
15 3vtx_A MAMA; tetratricopeptide 99.9 3.4E-21 1.2E-25 123.6 12.5 88 30-128 89-176 (184)
16 3upv_A Heat shock protein STI1 99.9 2.3E-20 8E-25 112.8 12.9 116 45-171 1-122 (126)
17 4gco_A Protein STI-1; structur 99.9 1.3E-20 4.5E-25 114.1 11.6 110 6-137 16-125 (126)
18 3qky_A Outer membrane assembly 99.9 4.6E-20 1.6E-24 124.6 15.2 148 6-168 18-192 (261)
19 2pzi_A Probable serine/threoni 99.8 1.4E-20 4.7E-25 142.7 12.3 129 30-170 449-577 (681)
20 2e2e_A Formate-dependent nitri 99.8 1.7E-20 5.9E-25 119.7 10.6 131 29-170 25-158 (177)
21 4abn_A Tetratricopeptide repea 99.8 6.8E-20 2.3E-24 133.6 14.3 139 30-169 118-300 (474)
22 3as5_A MAMA; tetratricopeptide 99.8 5.9E-19 2E-23 112.5 17.0 129 30-169 24-152 (186)
23 2q7f_A YRRB protein; TPR, prot 99.8 1.9E-19 6.4E-24 119.8 15.1 131 30-171 107-237 (243)
24 4gyw_A UDP-N-acetylglucosamine 99.8 2.3E-20 7.8E-25 141.7 11.8 120 30-160 59-178 (723)
25 3u4t_A TPR repeat-containing p 99.8 2.4E-19 8.3E-24 121.2 14.8 131 30-168 19-149 (272)
26 1w3b_A UDP-N-acetylglucosamine 99.8 3.1E-19 1E-23 126.7 15.6 129 30-169 253-381 (388)
27 4gcn_A Protein STI-1; structur 99.8 1.3E-19 4.4E-24 109.9 11.7 114 46-171 6-126 (127)
28 1w3b_A UDP-N-acetylglucosamine 99.8 4.5E-19 1.5E-23 125.8 16.2 128 30-168 83-210 (388)
29 2hr2_A Hypothetical protein; a 99.8 1.8E-20 6.1E-25 116.3 7.7 120 47-170 10-145 (159)
30 3uq3_A Heat shock protein STI1 99.8 3.7E-19 1.3E-23 119.1 14.7 130 30-170 121-256 (258)
31 4eqf_A PEX5-related protein; a 99.8 4.2E-19 1.4E-23 125.0 15.6 136 30-169 115-289 (365)
32 3qou_A Protein YBBN; thioredox 99.8 4.8E-19 1.6E-23 121.4 14.5 130 30-170 133-264 (287)
33 3uq3_A Heat shock protein STI1 99.8 1E-18 3.4E-23 117.0 15.6 137 30-170 54-216 (258)
34 2q7f_A YRRB protein; TPR, prot 99.8 4.1E-19 1.4E-23 118.1 13.6 129 30-169 73-201 (243)
35 3sz7_A HSC70 cochaperone (SGT) 99.8 2.7E-19 9.1E-24 112.9 12.0 111 43-164 6-116 (164)
36 1p5q_A FKBP52, FK506-binding p 99.8 2.2E-20 7.6E-25 130.7 7.3 137 30-170 129-273 (336)
37 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.8E-23 122.8 16.0 154 6-170 68-256 (365)
38 2ho1_A Type 4 fimbrial biogene 99.8 6E-18 2E-22 113.2 18.7 129 30-169 87-217 (252)
39 3hym_B Cell division cycle pro 99.8 1E-18 3.6E-23 120.8 15.4 136 30-169 175-312 (330)
40 3ieg_A DNAJ homolog subfamily 99.8 6.5E-18 2.2E-22 117.9 19.5 141 30-170 170-349 (359)
41 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1.9E-18 6.4E-23 113.1 15.7 133 4-161 7-155 (213)
42 2vq2_A PILW, putative fimbrial 99.8 1.8E-18 6.3E-23 113.5 15.8 130 30-168 58-189 (225)
43 2r5s_A Uncharacterized protein 99.8 3.5E-19 1.2E-23 113.7 11.9 129 30-169 22-152 (176)
44 3rkv_A Putative peptidylprolyl 99.8 6.6E-19 2.2E-23 110.9 12.9 120 47-170 10-141 (162)
45 2vsy_A XCC0866; transferase, g 99.8 9.5E-19 3.3E-23 130.1 15.7 128 30-168 5-132 (568)
46 2fo7_A Synthetic consensus TPR 99.8 3.1E-18 1.1E-22 103.6 15.3 120 30-160 17-136 (136)
47 2dba_A Smooth muscle cell asso 99.8 3.1E-18 1.1E-22 105.6 15.0 123 41-171 21-143 (148)
48 3urz_A Uncharacterized protein 99.8 1.6E-18 5.5E-23 113.5 14.2 112 47-169 3-130 (208)
49 3q49_B STIP1 homology and U bo 99.8 9E-19 3.1E-23 107.0 12.2 118 42-170 3-125 (137)
50 1fch_A Peroxisomal targeting s 99.8 5.1E-18 1.8E-22 119.2 17.7 137 30-170 114-294 (368)
51 3hym_B Cell division cycle pro 99.8 7.1E-18 2.4E-22 116.6 18.0 130 30-170 72-202 (330)
52 2vq2_A PILW, putative fimbrial 99.8 5.3E-18 1.8E-22 111.3 16.5 129 30-169 24-155 (225)
53 4ga2_A E3 SUMO-protein ligase 99.8 5.8E-19 2E-23 110.0 11.0 102 30-142 47-149 (150)
54 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.9E-18 9.8E-23 113.6 14.4 143 5-162 6-182 (225)
55 3as5_A MAMA; tetratricopeptide 99.8 9.4E-19 3.2E-23 111.5 11.5 123 30-163 58-180 (186)
56 3ieg_A DNAJ homolog subfamily 99.8 4.1E-18 1.4E-22 118.9 15.4 137 30-170 53-197 (359)
57 2ho1_A Type 4 fimbrial biogene 99.8 2.1E-18 7.1E-23 115.5 13.3 130 30-170 53-184 (252)
58 3qky_A Outer membrane assembly 99.8 1.4E-18 4.9E-23 117.3 12.4 136 30-169 68-237 (261)
59 1fch_A Peroxisomal targeting s 99.8 6.2E-18 2.1E-22 118.8 16.0 130 29-169 196-338 (368)
60 2lni_A Stress-induced-phosphop 99.8 5.5E-18 1.9E-22 102.6 13.8 117 43-170 11-127 (133)
61 2vsy_A XCC0866; transferase, g 99.8 4.9E-18 1.7E-22 126.3 16.1 127 30-167 39-168 (568)
62 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.3E-18 1.5E-22 115.1 14.4 126 28-164 19-148 (275)
63 2pzi_A Probable serine/threoni 99.8 8.1E-19 2.8E-23 133.0 11.6 129 30-170 407-543 (681)
64 1elw_A TPR1-domain of HOP; HOP 99.8 1.4E-17 4.7E-22 98.7 14.8 114 47-171 3-116 (118)
65 3mkr_A Coatomer subunit epsilo 99.8 6.7E-18 2.3E-22 116.0 15.2 125 30-168 117-241 (291)
66 1hxi_A PEX5, peroxisome target 99.8 2E-18 6.9E-23 103.7 11.1 103 49-162 18-120 (121)
67 2xpi_A Anaphase-promoting comp 99.8 1E-17 3.5E-22 124.6 16.4 137 30-170 457-593 (597)
68 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 1.5E-19 5.1E-24 131.3 6.0 137 30-170 250-394 (457)
69 4gcn_A Protein STI-1; structur 99.8 6E-18 2.1E-22 102.5 11.4 99 30-133 24-122 (127)
70 3cv0_A Peroxisome targeting si 99.8 2.1E-17 7.2E-22 114.1 15.5 132 27-169 151-294 (327)
71 2vyi_A SGTA protein; chaperone 99.8 1.6E-17 5.4E-22 100.1 13.0 118 42-170 6-123 (131)
72 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.2E-17 1.1E-21 110.8 16.0 123 30-163 59-251 (275)
73 2fbn_A 70 kDa peptidylprolyl i 99.8 1.8E-18 6.3E-23 112.3 9.4 137 30-170 20-165 (198)
74 1a17_A Serine/threonine protei 99.8 1.8E-17 6.1E-22 104.1 13.5 116 30-156 29-146 (166)
75 2y4t_A DNAJ homolog subfamily 99.8 2.8E-17 9.5E-22 118.4 16.0 135 30-168 76-218 (450)
76 1p5q_A FKBP52, FK506-binding p 99.8 1.6E-17 5.6E-22 116.2 14.3 115 30-155 163-293 (336)
77 2xev_A YBGF; tetratricopeptide 99.8 1.9E-17 6.6E-22 100.0 12.7 114 49-170 3-119 (129)
78 3cv0_A Peroxisome targeting si 99.8 1.1E-16 3.7E-21 110.6 17.9 136 30-169 71-248 (327)
79 1zu2_A Mitochondrial import re 99.8 8.9E-18 3.1E-22 104.0 11.0 110 26-170 14-134 (158)
80 3u4t_A TPR repeat-containing p 99.8 1.2E-17 4.1E-22 112.9 12.3 129 30-170 53-185 (272)
81 1na0_A Designed protein CTPR3; 99.8 7.4E-17 2.5E-21 96.4 14.0 117 43-170 3-120 (125)
82 2y4t_A DNAJ homolog subfamily 99.8 4.5E-17 1.6E-21 117.3 15.4 129 30-169 42-185 (450)
83 3mkr_A Coatomer subunit epsilo 99.8 5.2E-17 1.8E-21 111.6 14.5 127 30-167 146-275 (291)
84 3upv_A Heat shock protein STI1 99.8 2.3E-17 7.8E-22 99.5 11.4 113 5-139 6-124 (126)
85 4abn_A Tetratricopeptide repea 99.8 2.4E-17 8.3E-22 120.2 13.4 133 26-170 80-222 (474)
86 2kck_A TPR repeat; tetratricop 99.7 7.7E-18 2.6E-22 98.9 8.6 108 43-161 1-111 (112)
87 3gyz_A Chaperone protein IPGC; 99.7 3.9E-17 1.3E-21 101.7 11.2 87 30-127 52-138 (151)
88 2ond_A Cleavage stimulation fa 99.7 2.1E-16 7.1E-21 109.2 15.8 128 30-168 32-175 (308)
89 2ond_A Cleavage stimulation fa 99.7 3.1E-16 1.1E-20 108.3 16.2 140 30-169 80-249 (308)
90 3fp2_A TPR repeat-containing p 99.7 1.7E-16 5.9E-21 116.5 15.3 138 30-167 326-502 (537)
91 3fp2_A TPR repeat-containing p 99.7 8.1E-17 2.8E-21 118.3 13.3 128 30-169 259-386 (537)
92 3sz7_A HSC70 cochaperone (SGT) 99.7 4.7E-17 1.6E-21 102.5 10.4 99 30-139 27-125 (164)
93 1qqe_A Vesicular transport pro 99.7 7E-17 2.4E-21 110.9 12.0 129 30-163 93-235 (292)
94 1a17_A Serine/threonine protei 99.7 3.2E-16 1.1E-20 98.3 14.2 111 47-168 12-122 (166)
95 1elr_A TPR2A-domain of HOP; HO 99.7 1.6E-16 5.5E-21 95.7 12.1 114 45-170 1-121 (131)
96 4g1t_A Interferon-induced prot 99.7 7.4E-17 2.5E-21 117.0 12.5 134 29-169 153-289 (472)
97 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.6E-16 9E-21 104.1 14.0 129 30-162 57-219 (225)
98 2fbn_A 70 kDa peptidylprolyl i 99.7 1.1E-16 3.7E-21 103.9 11.9 115 30-155 54-185 (198)
99 2vyi_A SGTA protein; chaperone 99.7 2.2E-16 7.6E-21 95.0 12.5 103 30-143 28-130 (131)
100 3ulq_A Response regulator aspa 99.7 1E-16 3.5E-21 113.7 12.5 136 30-169 119-272 (383)
101 2c2l_A CHIP, carboxy terminus 99.7 7.6E-17 2.6E-21 110.2 11.4 127 30-169 20-177 (281)
102 1wao_1 Serine/threonine protei 99.7 3.7E-17 1.3E-21 119.3 9.7 121 29-160 21-154 (477)
103 2gw1_A Mitochondrial precursor 99.7 7.8E-17 2.7E-21 117.6 11.5 134 30-168 354-490 (514)
104 2hr2_A Hypothetical protein; a 99.7 2.3E-17 7.8E-22 102.4 7.3 112 4-137 12-146 (159)
105 2xcb_A PCRH, regulatory protei 99.7 1.1E-16 3.7E-21 98.7 10.1 101 30-141 34-134 (142)
106 2xpi_A Anaphase-promoting comp 99.7 8.7E-16 3E-20 114.3 16.9 129 30-169 355-483 (597)
107 3rkv_A Putative peptidylprolyl 99.7 6.8E-17 2.3E-21 101.6 9.4 104 30-144 27-149 (162)
108 3k9i_A BH0479 protein; putativ 99.7 8.5E-17 2.9E-21 95.9 9.2 99 60-166 2-100 (117)
109 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-16 3.9E-21 99.3 9.8 94 30-134 37-130 (148)
110 2lni_A Stress-induced-phosphop 99.7 2.2E-16 7.6E-21 95.4 10.7 102 30-142 32-133 (133)
111 1ihg_A Cyclophilin 40; ppiase 99.7 4.7E-16 1.6E-20 110.1 13.7 120 47-170 222-350 (370)
112 2c2l_A CHIP, carboxy terminus 99.7 2.2E-16 7.4E-21 107.9 11.1 105 45-160 1-105 (281)
113 4g1t_A Interferon-induced prot 99.7 2E-16 7E-21 114.7 11.3 137 30-168 67-216 (472)
114 2gw1_A Mitochondrial precursor 99.7 3.2E-16 1.1E-20 114.4 11.6 127 30-168 253-379 (514)
115 1qqe_A Vesicular transport pro 99.7 3.2E-16 1.1E-20 107.6 10.9 128 30-162 53-193 (292)
116 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 3.3E-16 1.1E-20 113.8 11.4 109 30-149 284-407 (457)
117 1hxi_A PEX5, peroxisome target 99.7 2.2E-16 7.5E-21 94.8 8.6 101 6-128 20-120 (121)
118 2if4_A ATFKBP42; FKBP-like, al 99.7 1.1E-16 3.8E-21 112.1 8.3 122 45-170 176-307 (338)
119 3dra_A Protein farnesyltransfe 99.7 6.9E-15 2.4E-19 101.3 16.9 150 5-167 30-186 (306)
120 2if4_A ATFKBP42; FKBP-like, al 99.7 1.9E-17 6.5E-22 116.0 4.0 122 30-162 195-334 (338)
121 1elw_A TPR1-domain of HOP; HOP 99.7 2.1E-15 7.1E-20 89.1 12.2 97 30-137 20-116 (118)
122 4f3v_A ESX-1 secretion system 99.7 3.6E-15 1.2E-19 101.0 14.6 129 30-169 118-249 (282)
123 3edt_B KLC 2, kinesin light ch 99.7 1.1E-15 3.8E-20 103.3 12.0 142 24-169 18-177 (283)
124 3q15_A PSP28, response regulat 99.7 8.3E-16 2.8E-20 108.9 11.6 135 30-168 117-268 (378)
125 1ihg_A Cyclophilin 40; ppiase 99.7 1.7E-15 5.9E-20 107.2 12.7 109 30-149 239-363 (370)
126 3edt_B KLC 2, kinesin light ch 99.7 1.4E-15 4.8E-20 102.8 11.3 123 30-156 59-198 (283)
127 1dce_A Protein (RAB geranylger 99.7 9.5E-15 3.2E-19 108.6 16.5 129 30-169 45-186 (567)
128 3q49_B STIP1 homology and U bo 99.7 1.3E-15 4.4E-20 92.8 10.0 102 30-142 25-131 (137)
129 2fo7_A Synthetic consensus TPR 99.6 1.3E-14 4.3E-19 87.5 13.9 110 49-169 2-111 (136)
130 3dra_A Protein farnesyltransfe 99.6 7.9E-15 2.7E-19 101.0 14.4 130 29-169 84-228 (306)
131 1na0_A Designed protein CTPR3; 99.6 7.8E-15 2.7E-19 87.4 12.8 101 30-141 25-125 (125)
132 1dce_A Protein (RAB geranylger 99.6 2.2E-15 7.5E-20 112.0 12.3 133 26-169 85-234 (567)
133 3k9i_A BH0479 protein; putativ 99.6 4.7E-16 1.6E-20 92.7 7.1 97 30-137 6-105 (117)
134 1ouv_A Conserved hypothetical 99.6 3.6E-14 1.2E-18 96.1 17.1 115 30-157 22-144 (273)
135 3ulq_A Response regulator aspa 99.6 3.3E-15 1.1E-19 105.9 11.6 124 30-158 159-295 (383)
136 2xev_A YBGF; tetratricopeptide 99.6 1E-14 3.4E-19 87.9 12.1 117 6-141 5-124 (129)
137 1elr_A TPR2A-domain of HOP; HO 99.6 5.3E-15 1.8E-19 88.9 10.6 108 30-142 20-127 (131)
138 3dss_A Geranylgeranyl transfer 99.6 2.3E-14 8E-19 99.4 14.9 130 27-167 87-233 (331)
139 3nf1_A KLC 1, kinesin light ch 99.6 4.7E-15 1.6E-19 101.6 11.4 136 30-169 43-203 (311)
140 2r5s_A Uncharacterized protein 99.6 1E-14 3.6E-19 92.8 12.0 114 30-155 56-172 (176)
141 2dba_A Smooth muscle cell asso 99.6 1.2E-14 4.2E-19 89.3 11.7 99 30-139 44-145 (148)
142 1wao_1 Serine/threonine protei 99.6 3.1E-16 1.1E-20 114.5 5.0 114 46-170 4-117 (477)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.4E-14 1.1E-18 92.7 14.1 100 48-161 6-105 (213)
144 3u3w_A Transcriptional activat 99.6 3.7E-15 1.3E-19 102.2 9.8 124 30-157 131-267 (293)
145 3rjv_A Putative SEL1 repeat pr 99.6 2.1E-14 7.3E-19 94.1 12.7 131 30-170 69-209 (212)
146 3q7a_A Farnesyltransferase alp 99.6 6E-14 2E-18 97.8 15.4 129 30-169 105-250 (349)
147 3q7a_A Farnesyltransferase alp 99.6 5.6E-14 1.9E-18 98.0 15.1 148 5-169 51-209 (349)
148 3nf1_A KLC 1, kinesin light ch 99.6 4.4E-15 1.5E-19 101.8 9.5 126 30-159 127-310 (311)
149 3q15_A PSP28, response regulat 99.6 1.9E-14 6.7E-19 101.9 12.6 124 30-158 157-292 (378)
150 2qfc_A PLCR protein; TPR, HTH, 99.6 1.4E-14 4.9E-19 99.3 10.7 124 30-157 131-267 (293)
151 3dss_A Geranylgeranyl transfer 99.6 2.8E-13 9.6E-18 94.0 17.1 129 30-169 46-187 (331)
152 3qou_A Protein YBBN; thioredox 99.6 1.5E-14 5.1E-19 99.1 10.5 115 30-155 167-283 (287)
153 2qfc_A PLCR protein; TPR, HTH, 99.6 3.4E-13 1.2E-17 92.5 16.2 124 30-158 91-227 (293)
154 1ouv_A Conserved hypothetical 99.6 4.5E-13 1.5E-17 90.7 16.7 116 30-158 94-217 (273)
155 3ro3_A PINS homolog, G-protein 99.6 2.2E-14 7.4E-19 89.2 9.2 125 30-159 25-161 (164)
156 2ooe_A Cleavage stimulation fa 99.6 1.6E-13 5.5E-18 101.2 14.7 138 31-168 303-470 (530)
157 4a1s_A PINS, partner of inscut 99.6 2.7E-14 9.1E-19 101.8 10.1 123 30-157 64-213 (411)
158 2ifu_A Gamma-SNAP; membrane fu 99.5 1.9E-14 6.3E-19 99.5 8.6 125 30-161 92-228 (307)
159 3gw4_A Uncharacterized protein 99.5 5.3E-14 1.8E-18 91.0 10.1 125 30-158 42-178 (203)
160 2ooe_A Cleavage stimulation fa 99.5 4.1E-13 1.4E-17 99.1 15.7 123 31-164 255-393 (530)
161 2kat_A Uncharacterized protein 99.5 1.6E-13 5.6E-18 81.2 11.1 99 32-141 3-103 (115)
162 2l6j_A TPR repeat-containing p 99.5 4.5E-15 1.5E-19 87.1 4.2 95 47-152 3-103 (111)
163 2ifu_A Gamma-SNAP; membrane fu 99.5 1.7E-14 5.9E-19 99.6 7.6 125 30-160 52-188 (307)
164 3sf4_A G-protein-signaling mod 99.5 4.7E-14 1.6E-18 100.0 9.6 124 30-158 203-338 (406)
165 3u3w_A Transcriptional activat 99.5 2E-13 6.7E-18 93.6 12.0 125 30-159 91-228 (293)
166 3sf4_A G-protein-signaling mod 99.5 8.1E-14 2.8E-18 98.8 9.8 122 30-156 25-176 (406)
167 3ro2_A PINS homolog, G-protein 99.5 9.2E-14 3.1E-18 95.8 9.7 122 30-156 21-172 (338)
168 2kat_A Uncharacterized protein 99.5 2.4E-13 8.3E-18 80.4 10.2 85 65-160 2-86 (115)
169 3rjv_A Putative SEL1 repeat pr 99.5 2.3E-13 7.9E-18 89.2 10.4 130 28-170 32-171 (212)
170 1na3_A Designed protein CTPR2; 99.5 3.7E-13 1.3E-17 76.0 10.0 83 47-140 8-90 (91)
171 4a1s_A PINS, partner of inscut 99.5 6.2E-14 2.1E-18 99.9 7.5 125 30-159 102-255 (411)
172 2e2e_A Formate-dependent nitri 99.5 1.2E-13 3.9E-18 87.9 7.6 102 58-170 20-124 (177)
173 2kck_A TPR repeat; tetratricop 99.5 1.6E-13 5.6E-18 80.1 7.7 89 30-127 22-111 (112)
174 3ro2_A PINS homolog, G-protein 99.5 2.2E-13 7.4E-18 93.9 8.6 126 30-160 199-336 (338)
175 1na3_A Designed protein CTPR2; 99.4 2.9E-12 9.9E-17 72.2 10.9 80 87-170 7-86 (91)
176 1klx_A Cysteine rich protein B 99.4 1E-11 3.4E-16 76.0 13.7 124 29-169 10-137 (138)
177 3gw4_A Uncharacterized protein 99.4 3.7E-12 1.2E-16 82.2 11.9 123 30-157 8-137 (203)
178 2l6j_A TPR repeat-containing p 99.4 4.4E-12 1.5E-16 74.1 11.2 77 88-168 3-85 (111)
179 2kc7_A BFR218_protein; tetratr 99.4 5.2E-13 1.8E-17 76.8 6.0 90 52-160 4-94 (99)
180 3ly7_A Transcriptional activat 99.4 3.2E-11 1.1E-15 84.3 15.6 121 30-162 215-345 (372)
181 1hz4_A MALT regulatory protein 99.4 7.9E-12 2.7E-16 88.1 12.9 125 30-159 30-167 (373)
182 3ma5_A Tetratricopeptide repea 99.4 3E-12 1E-16 73.9 8.6 70 44-124 3-72 (100)
183 3e4b_A ALGK; tetratricopeptide 99.4 2.5E-11 8.5E-16 88.1 15.3 123 29-168 194-325 (452)
184 4f3v_A ESX-1 secretion system 99.4 1.1E-12 3.8E-17 88.9 7.0 128 30-157 22-201 (282)
185 3ma5_A Tetratricopeptide repea 99.4 2.1E-12 7.3E-17 74.6 6.5 70 87-160 5-74 (100)
186 2xm6_A Protein corresponding t 99.4 1.7E-11 6E-16 89.6 12.7 127 30-169 312-448 (490)
187 3n71_A Histone lysine methyltr 99.3 7.4E-12 2.5E-16 91.5 10.4 123 30-156 325-464 (490)
188 2kc7_A BFR218_protein; tetratr 99.3 2E-11 6.9E-16 70.0 10.0 61 104-164 11-72 (99)
189 2xm6_A Protein corresponding t 99.3 1.4E-10 5E-15 84.7 16.6 123 30-167 59-189 (490)
190 3mv2_B Coatomer subunit epsilo 99.3 1.2E-10 4.1E-15 79.9 14.9 132 30-167 116-261 (310)
191 1hz4_A MALT regulatory protein 99.3 4.4E-11 1.5E-15 84.3 11.5 124 30-157 69-204 (373)
192 3ro3_A PINS homolog, G-protein 99.3 4E-11 1.4E-15 74.2 9.4 106 47-157 8-119 (164)
193 3e4b_A ALGK; tetratricopeptide 99.3 1.2E-10 4.2E-15 84.5 12.8 117 29-167 232-360 (452)
194 4b4t_Q 26S proteasome regulato 99.2 8E-11 2.7E-15 84.4 8.7 125 30-158 20-206 (434)
195 3n71_A Histone lysine methyltr 99.2 6.1E-10 2.1E-14 81.5 11.9 111 53-167 314-438 (490)
196 3bee_A Putative YFRE protein; 99.1 7.5E-10 2.6E-14 62.9 9.5 75 87-162 4-78 (93)
197 3qww_A SET and MYND domain-con 99.1 6.6E-10 2.3E-14 80.1 11.5 108 60-171 310-431 (433)
198 1pc2_A Mitochondria fission pr 99.1 5.7E-10 1.9E-14 68.5 9.4 98 65-170 15-114 (152)
199 3u64_A Protein TP_0956; tetrat 99.1 1.2E-09 4.2E-14 73.7 11.5 115 41-160 145-273 (301)
200 3qwp_A SET and MYND domain-con 99.1 4.1E-09 1.4E-13 76.0 14.6 114 53-170 292-419 (429)
201 1xi4_A Clathrin heavy chain; a 99.1 4.3E-09 1.5E-13 84.3 15.3 133 30-168 1121-1321(1630)
202 1zu2_A Mitochondrial import re 99.1 2.4E-10 8.2E-15 70.8 6.7 65 105-169 14-88 (158)
203 2v5f_A Prolyl 4-hydroxylase su 99.1 1.1E-09 3.8E-14 63.6 9.1 84 47-134 4-87 (104)
204 1pc2_A Mitochondria fission pr 99.1 2.8E-09 9.7E-14 65.4 10.9 101 27-137 11-115 (152)
205 2v5f_A Prolyl 4-hydroxylase su 99.1 2.4E-09 8.1E-14 62.1 10.3 76 89-168 5-87 (104)
206 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.5E-13 69.9 14.1 123 30-166 152-292 (310)
207 3bee_A Putative YFRE protein; 99.0 4.7E-09 1.6E-13 59.6 8.4 72 44-126 2-76 (93)
208 4h7y_A Dual specificity protei 98.9 4.8E-08 1.6E-12 59.3 12.0 118 42-164 7-131 (161)
209 1xi4_A Clathrin heavy chain; a 98.9 9.4E-08 3.2E-12 76.9 15.1 103 30-153 1092-1221(1630)
210 3qwp_A SET and MYND domain-con 98.9 8.9E-09 3E-13 74.2 8.7 106 30-139 303-425 (429)
211 3qww_A SET and MYND domain-con 98.9 4.2E-08 1.4E-12 70.8 11.8 96 30-129 314-423 (433)
212 1b89_A Protein (clathrin heavy 98.8 4.8E-08 1.6E-12 70.1 10.3 40 130-169 210-249 (449)
213 3u64_A Protein TP_0956; tetrat 98.8 6.2E-08 2.1E-12 65.5 10.2 95 22-126 171-273 (301)
214 1b89_A Protein (clathrin heavy 98.8 6.4E-09 2.2E-13 74.6 4.6 114 30-166 48-182 (449)
215 1klx_A Cysteine rich protein B 98.8 2.3E-07 7.7E-12 56.5 10.7 93 30-135 41-137 (138)
216 4e6h_A MRNA 3'-END-processing 98.7 3.3E-07 1.1E-11 69.7 12.6 116 30-156 325-463 (679)
217 4b4t_Q 26S proteasome regulato 98.7 1E-07 3.4E-12 68.3 9.1 122 30-156 111-245 (434)
218 4e6h_A MRNA 3'-END-processing 98.7 4.7E-07 1.6E-11 68.8 12.3 47 31-77 360-407 (679)
219 1nzn_A CGI-135 protein, fissio 98.7 2E-06 6.9E-11 51.0 12.4 94 30-133 17-114 (126)
220 1nzn_A CGI-135 protein, fissio 98.6 4.6E-07 1.6E-11 53.7 7.5 64 107-170 52-117 (126)
221 2uy1_A Cleavage stimulation fa 98.6 5.7E-06 1.9E-10 60.8 15.0 131 30-166 195-359 (493)
222 3ly7_A Transcriptional activat 98.5 1.1E-05 3.7E-10 56.7 14.0 119 41-167 187-316 (372)
223 3o48_A Mitochondria fission 1 98.3 2.6E-06 8.9E-11 50.7 7.0 64 107-170 57-121 (134)
224 1y8m_A FIS1; mitochondria, unk 98.2 5.5E-06 1.9E-10 49.9 7.0 64 107-170 56-120 (144)
225 3ffl_A Anaphase-promoting comp 98.1 0.00014 4.8E-09 45.1 10.7 117 49-170 21-164 (167)
226 3ffl_A Anaphase-promoting comp 97.9 5.6E-05 1.9E-09 46.8 7.0 104 29-137 35-165 (167)
227 3o48_A Mitochondria fission 1 97.7 0.0018 6.2E-08 38.6 12.1 97 30-137 23-122 (134)
228 1y8m_A FIS1; mitochondria, unk 97.7 0.0021 7.1E-08 38.8 12.1 96 30-136 22-120 (144)
229 4gns_B Protein CSD3, chitin bi 97.7 0.0032 1.1E-07 48.6 15.3 119 30-153 265-397 (754)
230 2uy1_A Cleavage stimulation fa 97.7 0.0022 7.7E-08 47.1 14.2 96 58-168 296-391 (493)
231 4g26_A Pentatricopeptide repea 97.6 0.0064 2.2E-07 44.9 15.2 123 29-162 85-212 (501)
232 1ya0_A SMG-7 transcript varian 97.5 0.0016 5.4E-08 47.9 10.4 76 91-170 154-229 (497)
233 4h7y_A Dual specificity protei 97.2 0.0092 3.1E-07 36.5 9.9 101 28-141 33-141 (161)
234 3kae_A CDC27, possible protein 97.0 0.025 8.4E-07 35.5 12.1 104 45-164 30-151 (242)
235 4b4t_R RPN7, 26S proteasome re 96.9 0.0066 2.3E-07 43.9 8.4 120 30-157 113-238 (429)
236 2ff4_A Probable regulatory pro 96.8 0.072 2.5E-06 37.9 14.1 101 55-155 122-233 (388)
237 4gns_B Protein CSD3, chitin bi 96.6 0.0043 1.5E-07 47.9 6.2 45 30-74 353-397 (754)
238 1zbp_A Hypothetical protein VP 96.6 0.017 6E-07 38.7 8.3 59 106-164 10-68 (273)
239 1zbp_A Hypothetical protein VP 96.5 0.074 2.5E-06 35.8 10.4 112 30-159 13-132 (273)
240 1ya0_A SMG-7 transcript varian 96.2 0.052 1.8E-06 40.0 9.6 79 50-139 154-232 (497)
241 4fhn_B Nucleoporin NUP120; pro 96.1 0.095 3.2E-06 42.7 11.4 108 42-153 836-964 (1139)
242 3kae_A CDC27, possible protein 96.0 0.14 4.7E-06 32.2 13.4 111 45-159 59-240 (242)
243 4g26_A Pentatricopeptide repea 95.8 0.36 1.2E-05 35.6 15.9 121 30-161 42-176 (501)
244 4b4t_S RPN3, 26S proteasome re 95.7 0.02 6.8E-07 42.2 5.5 106 44-161 177-304 (523)
245 4b4t_P 26S proteasome regulato 95.7 0.38 1.3E-05 34.9 12.8 104 48-156 137-247 (445)
246 3mkq_B Coatomer subunit alpha; 95.7 0.21 7E-06 31.5 12.1 43 30-77 21-63 (177)
247 3txn_A 26S proteasome regulato 95.6 0.39 1.3E-05 34.3 12.9 99 53-156 104-210 (394)
248 1qsa_A Protein (soluble lytic 94.9 0.9 3.1E-05 34.6 13.7 62 107-170 299-360 (618)
249 3mkq_A Coatomer beta'-subunit; 94.6 0.81 2.8E-05 35.4 11.7 30 46-75 679-708 (814)
250 3txn_A 26S proteasome regulato 94.2 0.84 2.9E-05 32.6 10.1 54 103-156 109-168 (394)
251 2ff4_A Probable regulatory pro 93.7 0.44 1.5E-05 33.9 8.0 46 30-75 187-232 (388)
252 3mkq_B Coatomer subunit alpha; 92.7 0.62 2.1E-05 29.3 6.7 45 105-154 17-61 (177)
253 3ax2_A Mitochondrial import re 92.0 0.75 2.6E-05 24.3 5.5 36 131-166 21-56 (73)
254 4b4t_S RPN3, 26S proteasome re 91.6 0.87 3E-05 33.8 7.3 73 48-126 231-303 (523)
255 3t5v_B Nuclear mRNA export pro 91.1 1 3.5E-05 32.9 7.2 97 64-160 142-254 (455)
256 1wy6_A Hypothetical protein ST 90.8 1.7 5.9E-05 26.3 6.9 53 104-156 102-154 (172)
257 3spa_A Mtrpol, DNA-directed RN 90.3 6.5 0.00022 32.1 12.6 100 50-156 129-230 (1134)
258 4b4t_R RPN7, 26S proteasome re 89.0 0.89 3E-05 32.8 5.5 62 91-156 133-197 (429)
259 4gq2_M Nucleoporin NUP120; bet 88.4 8.7 0.0003 31.0 12.4 36 40-75 832-867 (950)
260 2w2u_A Hypothetical P60 katani 87.8 2.1 7.1E-05 23.2 5.2 36 26-76 12-47 (83)
261 4b4t_P 26S proteasome regulato 87.7 6.4 0.00022 28.6 9.6 89 30-122 153-247 (445)
262 3mkq_A Coatomer beta'-subunit; 86.8 5.8 0.0002 30.6 9.2 42 107-153 666-707 (814)
263 1om2_A Protein (mitochondrial 86.7 1.4 4.9E-05 24.5 4.2 19 107-125 34-52 (95)
264 3t5x_A PCI domain-containing p 83.9 2.7 9.1E-05 27.0 5.2 55 86-144 11-70 (203)
265 2crb_A Nuclear receptor bindin 83.8 2.7 9.3E-05 23.2 4.3 29 48-76 15-43 (97)
266 3ax2_A Mitochondrial import re 82.2 2.3 7.9E-05 22.4 3.6 28 52-79 21-48 (73)
267 2wpv_A GET4, UPF0363 protein Y 79.9 7.4 0.00025 26.9 6.4 48 25-72 111-158 (312)
268 3esl_A Checkpoint serine/threo 79.6 9.9 0.00034 24.4 8.3 88 28-125 58-147 (202)
269 3t5v_B Nuclear mRNA export pro 79.3 13 0.00045 27.2 7.9 96 27-126 139-254 (455)
270 3spa_A Mtrpol, DNA-directed RN 78.5 26 0.00088 28.9 9.7 60 103-162 137-202 (1134)
271 2wpv_A GET4, UPF0363 protein Y 77.5 15 0.00052 25.4 8.6 27 125-151 132-158 (312)
272 2rpa_A Katanin P60 ATPase-cont 75.3 4.2 0.00014 21.7 3.3 27 50-76 14-40 (78)
273 3bu8_A Telomeric repeat-bindin 74.0 5.4 0.00019 25.9 4.1 35 135-169 122-156 (235)
274 2crb_A Nuclear receptor bindin 73.6 9.3 0.00032 21.1 4.4 13 106-118 28-40 (97)
275 3t5x_A PCI domain-containing p 72.5 16 0.00055 23.4 6.4 35 127-161 14-48 (203)
276 4gq2_M Nucleoporin NUP120; bet 72.1 5.8 0.0002 32.0 4.8 47 104-154 821-867 (950)
277 4abx_A DNA repair protein RECN 71.7 15 0.00053 22.8 7.1 55 25-79 67-121 (175)
278 2v6y_A AAA family ATPase, P60 71.5 9.7 0.00033 20.4 4.3 19 58-76 21-39 (83)
279 3bqo_A Telomeric repeat-bindin 69.9 3.7 0.00013 26.3 2.7 33 135-167 125-157 (211)
280 1wy6_A Hypothetical protein ST 69.3 16 0.00056 22.2 7.1 42 36-77 113-154 (172)
281 4fhn_B Nucleoporin NUP120; pro 68.4 50 0.0017 27.3 10.9 92 53-159 817-931 (1139)
282 2br9_A 14-3-3E, 14-3-3 protein 68.3 23 0.00078 23.4 8.9 46 110-155 147-201 (234)
283 3lew_A SUSD-like carbohydrate 67.7 19 0.00064 26.6 6.5 51 26-76 170-231 (495)
284 4aez_C MAD3, mitotic spindle c 67.3 19 0.00066 23.5 5.7 32 124-155 147-178 (223)
285 3kez_A Putative sugar binding 65.4 24 0.00083 25.7 6.6 52 25-76 165-224 (461)
286 3mcx_A SUSD superfamily protei 65.3 27 0.00094 25.5 6.9 52 25-76 171-230 (477)
287 2npm_A 14-3-3 domain containin 65.1 28 0.00097 23.3 9.1 47 109-155 172-226 (260)
288 3myv_A SUSD superfamily protei 63.7 21 0.00073 25.9 6.1 51 26-76 160-218 (454)
289 3lpz_A GET4 (YOR164C homolog); 61.6 39 0.0013 23.7 9.7 27 124-150 133-159 (336)
290 2v6x_A Vacuolar protein sortin 61.6 17 0.00057 19.5 4.3 20 57-76 22-41 (85)
291 2wvi_A Mitotic checkpoint seri 61.3 26 0.0009 21.7 7.1 83 28-125 44-128 (164)
292 3re2_A Predicted protein; meni 61.0 43 0.0015 24.0 7.7 46 125-170 294-345 (472)
293 3u84_A Menin; MLL, JUND, ledgf 60.6 47 0.0016 24.3 7.7 47 124-170 315-367 (550)
294 1o9d_A 14-3-3-like protein C; 60.6 35 0.0012 22.9 7.6 45 110-154 152-205 (260)
295 2cfu_A SDSA1; SDS-hydrolase, l 60.5 27 0.00093 26.9 6.3 38 105-142 461-498 (658)
296 2cpt_A SKD1 protein, vacuolar 58.7 21 0.00071 20.7 4.3 33 29-76 14-46 (117)
297 3ubw_A 14-3-3E, 14-3-3 protein 58.4 39 0.0013 22.7 10.8 46 109-154 172-226 (261)
298 2ijq_A Hypothetical protein; s 58.2 30 0.001 21.3 9.9 69 50-122 34-104 (161)
299 3snx_A SUSD homolog, putative 58.1 45 0.0015 24.3 6.9 52 26-77 156-220 (460)
300 3myv_A SUSD superfamily protei 57.1 52 0.0018 23.9 7.1 29 127-155 190-218 (454)
301 2ijq_A Hypothetical protein; s 56.7 32 0.0011 21.2 7.5 61 5-76 34-103 (161)
302 3jq1_A SUSD superfamily protei 56.0 31 0.0011 25.3 5.8 52 25-76 149-208 (481)
303 2cwy_A Hypothetical protein TT 55.2 25 0.00084 19.4 6.5 63 52-122 5-68 (94)
304 3kez_A Putative sugar binding 53.8 60 0.0021 23.6 7.0 29 127-155 196-224 (461)
305 3esl_A Checkpoint serine/threo 53.4 42 0.0014 21.6 11.3 67 87-158 78-146 (202)
306 3lew_A SUSD-like carbohydrate 53.2 65 0.0022 23.7 7.2 30 127-156 203-232 (495)
307 2cfu_A SDSA1; SDS-hydrolase, l 52.5 39 0.0014 26.0 6.1 42 128-169 450-491 (658)
308 2dl1_A Spartin; SPG20, MIT, st 51.6 33 0.0011 19.8 5.1 45 27-79 16-60 (116)
309 3qnk_A Putative lipoprotein; a 50.8 52 0.0018 24.4 6.4 51 26-76 149-210 (517)
310 3mcx_A SUSD superfamily protei 50.4 65 0.0022 23.5 6.8 47 110-156 177-231 (477)
311 3hdx_A SUSD homolog, SUSD supe 50.2 45 0.0015 24.4 5.9 51 26-76 152-225 (478)
312 2wvi_A Mitotic checkpoint seri 43.9 55 0.0019 20.2 7.9 47 112-158 79-127 (164)
313 3mkr_B Coatomer subunit alpha; 43.5 80 0.0028 22.0 8.8 113 50-162 104-233 (320)
314 3i4g_A SUSD-like carbohydrate 42.4 80 0.0027 23.5 6.2 51 26-76 163-226 (528)
315 3re2_A Predicted protein; meni 40.2 1E+02 0.0035 22.2 7.9 54 20-75 270-323 (472)
316 2e2a_A Protein (enzyme IIA); h 39.7 51 0.0018 18.6 4.0 32 45-76 17-48 (105)
317 1qsa_A Protein (soluble lytic 39.6 1.3E+02 0.0043 23.1 15.3 117 30-152 301-438 (618)
318 2vkj_A TM1634; membrane protei 39.2 48 0.0017 18.2 4.7 31 47-77 52-82 (106)
319 1wcr_A PTS system, N, N'-diace 38.9 53 0.0018 18.5 4.0 32 45-76 15-46 (103)
320 4aez_C MAD3, mitotic spindle c 38.7 81 0.0028 20.6 11.2 23 103-125 160-182 (223)
321 3jq1_A SUSD superfamily protei 38.3 1E+02 0.0036 22.5 6.3 29 127-155 180-208 (481)
322 3iqu_A 14-3-3 protein sigma; s 37.9 86 0.0029 20.7 8.5 46 109-154 149-203 (236)
323 4gq4_A Menin; tumor suppressor 37.4 1.2E+02 0.0041 22.2 8.3 45 125-169 301-351 (489)
324 3otn_A SUSD superfamily protei 36.7 61 0.0021 23.8 4.8 52 25-76 155-225 (482)
325 3mv2_A Coatomer subunit alpha; 36.7 1.1E+02 0.0037 21.4 10.9 114 50-164 116-244 (325)
326 4a1g_A Mitotic checkpoint seri 35.8 74 0.0025 19.4 10.0 49 110-158 82-132 (152)
327 3snx_A SUSD homolog, putative 35.1 1.3E+02 0.0044 21.9 6.7 31 127-157 191-221 (460)
328 3hdx_A SUSD homolog, SUSD supe 34.8 1.3E+02 0.0045 21.9 6.6 30 127-156 197-226 (478)
329 3k1s_A PTS system, cellobiose- 34.7 65 0.0022 18.4 4.0 31 46-76 20-50 (109)
330 3efz_A 14-3-3 protein; 14-3-3, 33.6 1.1E+02 0.0037 20.7 5.2 48 109-156 168-226 (268)
331 3l8r_A PTCA, putative PTS syst 33.4 73 0.0025 18.5 4.0 33 44-76 33-65 (120)
332 4b4t_O 26S proteasome regulato 33.1 1.3E+02 0.0045 21.4 8.7 89 29-121 91-197 (393)
333 3qnk_A Putative lipoprotein; a 32.7 1.5E+02 0.0051 21.9 7.3 30 127-156 182-211 (517)
334 3jys_A SUSD superfamily protei 32.6 1.4E+02 0.0049 22.0 6.2 73 4-76 121-222 (499)
335 3lvg_A Clathrin heavy chain 1; 31.6 0.34 1.2E-05 36.0 -7.4 46 103-149 239-284 (624)
336 4a5x_A MITD1, MIT domain-conta 31.5 64 0.0022 17.3 7.1 39 9-47 15-56 (86)
337 3s6n_M SurviVal motor neuron p 30.6 41 0.0014 14.7 2.2 17 107-123 16-32 (37)
338 2xze_A STAM-binding protein; h 28.9 98 0.0033 18.6 6.3 44 75-122 25-69 (146)
339 3u84_A Menin; MLL, JUND, ledgf 27.4 1.9E+02 0.0064 21.3 8.3 54 20-75 292-345 (550)
340 1ixm_A SPO0B, protein (sporula 26.9 1.1E+02 0.0037 19.3 4.2 19 104-122 43-61 (192)
341 2ca5_A MXIH; transport protein 26.8 72 0.0025 17.2 2.8 23 108-130 25-47 (85)
342 3bu8_A Telomeric repeat-bindin 26.7 89 0.003 20.5 3.7 39 104-142 125-163 (235)
343 1wfd_A Hypothetical protein 15 26.6 85 0.0029 17.1 6.9 20 26-45 34-53 (93)
344 3l22_A SUSD superfamily protei 26.5 65 0.0022 23.3 3.5 49 26-75 168-228 (441)
345 4abx_A DNA repair protein RECN 24.6 73 0.0025 19.7 3.1 49 111-159 74-122 (175)
346 3ckc_A SUSD; TPR repeat, carbo 24.3 2.1E+02 0.0073 21.0 6.6 73 4-76 130-231 (527)
347 3uzd_A 14-3-3 protein gamma; s 24.1 1.6E+02 0.0056 19.6 12.3 46 109-154 147-201 (248)
348 2zan_A Vacuolar protein sortin 23.4 17 0.00058 26.3 0.0 15 62-76 25-39 (444)
349 3i4g_A SUSD-like carbohydrate 23.0 2.4E+02 0.0081 21.0 6.4 29 127-155 198-226 (528)
350 4gq4_A Menin; tumor suppressor 22.3 2.4E+02 0.0081 20.8 7.9 52 22-75 279-330 (489)
351 3lpz_A GET4 (YOR164C homolog); 22.1 2.1E+02 0.0072 20.1 18.1 48 24-71 112-159 (336)
352 3eab_A Spastin; spastin, MIT, 21.8 1.1E+02 0.0038 16.7 4.7 20 27-46 10-29 (89)
353 3ph0_C ASCG; type III secretio 21.4 89 0.003 15.5 4.3 38 30-68 22-60 (61)
354 2yhe_A SEC-alkyl sulfatase; hy 25.7 22 0.00074 27.5 0.0 40 106-145 474-513 (668)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.93 E-value=6.3e-25 Score=133.26 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=111.5
Q ss_pred HHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 039398 39 KAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTE 118 (172)
Q Consensus 39 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (172)
++..++|+.++++..+|..++..|+|++|+..|+++++++| ....+++.+|.++ ..+|++++|+..|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~----~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACL----TKLMEFQRALDDCDT 72 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHH----HhhccHHHHHHHHHH
Confidence 45568999999999999999999999999999999999998 6777888888888 455999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 119 AVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..|.++
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998765
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.93 E-value=1.3e-25 Score=140.22 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+.+++..+|+++..++.+|.+|+..|++++|+.+|+++++++| ....+++.+|.++ ..+|++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~----~~~~~~ 81 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-------RDPKAHRFLGLLY----ELEENT 81 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHcCch
Confidence 99999999999999999999999999999999999999999999999998 7778899999988 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTA-YESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~l 170 (172)
++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..+.+|
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765 599999999999998877665
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2e-23 Score=158.35 Aligned_cols=130 Identities=26% Similarity=0.220 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++| ....+++++|.++ ..+|++
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-------~~~~a~~nLg~~l----~~~g~~ 93 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-------TFADAYSNMGNTL----KEMQDV 93 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999998 7788899999998 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++..++..|..+
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999998877643
No 4
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.91 E-value=1.5e-23 Score=130.84 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=110.3
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHH
Q 039398 33 AEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSA 112 (172)
Q Consensus 33 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 112 (172)
+-..+++++.++|+++.+++.+|.+++..|++++|+..|++++.++| ....+|+.+|.++ ..+|++++|
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-------~~~~~~~~lg~~~----~~~g~~~~A 89 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-------YNVDYIMGLAAIY----QIKEQFQQA 89 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHHccHHHH
Confidence 33446788999999999999999999999999999999999999998 7777888899888 455999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 113 IDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.+.|+.+.
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999874
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=7.7e-23 Score=134.95 Aligned_cols=152 Identities=21% Similarity=0.145 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
++..|..++...+ +++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.....+
T Consensus 8 ~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 76 (217)
T 2pl2_A 8 PLRLGVQLYALGR-----------YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGY 76 (217)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3445555555555 99999999999999999999999999999999999999999999999999665555
Q ss_pred hhhhHHHHHh-----------hhHHHH-----------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 039398 86 KEKGDALFKR-----------AEVKMS-----------------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALC 131 (172)
Q Consensus 86 ~~~~~~~~~~-----------~~~~~~-----------------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 131 (172)
...+.++... |+...+ ++..+|++++|+..|+++++++ +++.+++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 5555555555 443331 2445577777777777777776 6677777
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 132 LLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 132 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.+|.++...|++++|+..|++++.++|+++.++..+..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 77777777777777777777777777777776665544
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=5.1e-23 Score=146.11 Aligned_cols=129 Identities=9% Similarity=-0.005 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGF-KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++| ....+|+.+|.++... |+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-------~~~~a~~~~g~~~~~~----g~ 181 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-------KNYQVWHHRRVLVEWL----RD 181 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH----TC
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHc----cC
Confidence 8889999999999999999999999999999996 9999999999999888 6677788888877444 88
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++|+..|++++.++|++..+|+++|.++..+|++++|+..|++++.++|++..+|..+..
T Consensus 182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888876654
No 7
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=3.1e-22 Score=128.51 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
.+.+|..+..+.+ +++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.....+
T Consensus 8 y~~lG~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 8 YMDIGDKKRTKGD-----------FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHTC-----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence 3445666666655 99999999999999999999999999999999999999999999998888444333
Q ss_pred hhhhHHHHHhhhHHH-----------------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 86 KEKGDALFKRAEVKM-----------------------SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
...+..+...++... .++..+|++++|+..|+++++.+|+++.+++.+|.++..+|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 333333332222211 124556888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHccCCCcHH
Q 039398 143 RDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 143 ~~~A~~~~~~al~~~p~~~~ 162 (172)
+++|+..|+++++++|+++.
T Consensus 157 ~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCccCHH
Confidence 88888888888888887654
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.4e-22 Score=133.70 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----------CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ-----------GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEV 98 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (172)
+++|+..|+++++.+|+++.+++.+|.++... |++++|+..++++++++|.....+...+.++...|+.
T Consensus 55 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 89999999999999999999999999999999 9999999999999999996655555555554444433
Q ss_pred HHH----------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 99 KMS----------------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 99 ~~~----------------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..+ ++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++.
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 221 24566999999999999999999999999999999999999999999998765
No 9
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.89 E-value=4.1e-22 Score=130.68 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHH----------------HHHHHHHhCChhHHHH
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHIL----------------KALALDLQGFKTSALE 69 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~ 69 (172)
.+..|..++...+ +++|+..|++++..+|+++.+++. +|.++...|++++|+.
T Consensus 7 ~~~~g~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 7 MLQKVSAAIEAGQ-----------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-----------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555555 999999999999999999999999 9999999999999999
Q ss_pred HHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Q 039398 70 SFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK--------- 140 (172)
Q Consensus 70 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------- 140 (172)
.|+++++++| ....+++.+|.++... |++++|+..|+++++++|+++.+++.+|.++...
T Consensus 76 ~~~~al~~~p-------~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 76 FYKELLQKAP-------NNVDCLEACAEMQVCR----GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHCT-------TCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999998 6778889999988544 9999999999999999999999988888776433
Q ss_pred --------------------------cCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 141 --------------------------KMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 141 --------------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|++++|+..|+++++++|+.. +...|.++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 468899999999999999854 45556554
No 10
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=2.2e-22 Score=133.37 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|.........+.+++.+|.++ ..+|++
T Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~----~~~~~~ 133 (228)
T 4i17_A 58 YKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF----QQAGNI 133 (228)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH----HHhccH
Confidence 8999999999999999999999999999999999999999999999988865555555667788888888 445999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCH---------------------------HHHHHHHHHHHccCCCc
Q 039398 110 DSAIDDLTEAVKIQDD--NVKALCLLGECYEVKKMR---------------------------DEAKTAYESALKIEPSW 160 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~---------------------------~~A~~~~~~al~~~p~~ 160 (172)
++|+..|+++++.+|+ ++.+++.+|.++...|+. ++|+.+|+++++++|++
T Consensus 134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999 999999999999999998 99999999999999999
Q ss_pred HHHHHHHHhhh
Q 039398 161 TDAQAALDRLV 171 (172)
Q Consensus 161 ~~~~~~l~~l~ 171 (172)
+.+...+..++
T Consensus 214 ~~~~~~l~~i~ 224 (228)
T 4i17_A 214 TEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888775
No 11
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=1.2e-21 Score=129.74 Aligned_cols=143 Identities=18% Similarity=0.141 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCc-ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDY-KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT 84 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 84 (172)
.+..|..++...+ +++|+..|++++..+| .+..+++.+|.++...|++++|+..+++++..+|
T Consensus 10 ~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----- 73 (228)
T 4i17_A 10 LKNEGNDALNAKN-----------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY----- 73 (228)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHccC-----------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-----
Confidence 4445655555555 9999999999999999 8999999999999999999999999999999988
Q ss_pred hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 85 EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV-------KALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
....+++.+|.++ ..+|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|+++++++
T Consensus 74 --~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 74 --NLANAYIGKSAAY----RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT 147 (228)
T ss_dssp --SHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS
T ss_pred --chHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC
Confidence 6777888899888 455999999999999999999998 679999999999999999999999999999
Q ss_pred CC--cHHHHHHHHhh
Q 039398 158 PS--WTDAQAALDRL 170 (172)
Q Consensus 158 p~--~~~~~~~l~~l 170 (172)
|+ +..++..+..+
T Consensus 148 p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 148 SKKWKTDALYSLGVL 162 (228)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHH
Confidence 99 88888776543
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.89 E-value=5.1e-22 Score=123.63 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=109.8
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 35 AEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 35 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ....+++.+|.++ ..+|++++|+.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~~~A~~ 76 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-------YDSRFFLGLGACR----QAMGQYDLAIH 76 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-------ccHHHHHHHHHHH----HHHhhHHHHHH
Confidence 457889999999999999999999999999999999999999988 6677788888888 45599999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.|++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++...
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999999999999999876543
No 13
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.87 E-value=8e-22 Score=121.85 Aligned_cols=122 Identities=10% Similarity=0.028 Sum_probs=108.8
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 35 AEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 35 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
..|++++..+|+++..++.+|.+++..|++++|+..|++++..+| ....+++.+|.++ ..+|++++|+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~~~A~~ 73 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-------YDARYFLGLGACR----QSLGLYEQALQ 73 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHH----HHHhhHHHHHH
Confidence 467889999999999999999999999999999999999999988 6677788888888 45599999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.|++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++..+...
T Consensus 74 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 74 SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999887655443
No 14
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=3e-21 Score=137.09 Aligned_cols=129 Identities=14% Similarity=-0.013 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++| ....+|+.+|.++..+ |++
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-------~~~~a~~~lg~~~~~~----g~~ 216 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-------KNYHAWQHRQWVIQEF----KLW 216 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH----TCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-------cCHHHHHHHHHHHHHc----CCh
Confidence 89999999999999999999999999999999999999999999999998 7778888899888544 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHH-----HHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEV-KKMRDEA-----KTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+.+|+++++++|++..+|+++|.++.. .|.+++| +..|++++.++|++..+|..+..
T Consensus 217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999999999 5655888 59999999999999999988764
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=3.4e-21 Score=123.61 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
++.|+..+.+++..+|+++.++..+|.++...|++++|+..|+++++++| ....+++.+|.++ ..+|++
T Consensus 89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~lg~~~----~~~g~~ 157 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-------GFIRAYQSIGLAY----EGKGLR 157 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-------hhhhHHHHHHHHH----HHCCCH
Confidence 88999999999999999999999999999999999999999999999988 6778899999998 555999
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 039398 110 DSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~ 128 (172)
++|+..|+++++++|+++.
T Consensus 158 ~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCCccCHH
Confidence 9999999999999997643
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.3e-20 Score=112.80 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=106.6
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
|..+..+..+|..++..|++++|+..|++++.++| ....+++.+|.++ ..+|++++|+..|+++++++|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-------EDARGYSNRAAAL----AKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHH----HHhcCHHHHHHHHHHHHHhCC
Confidence 45678899999999999999999999999999988 5677888888888 445999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC------CCcHHHHHHHHhhh
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKIE------PSWTDAQAALDRLV 171 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~l~ 171 (172)
+++.+++.+|.++..+|++++|+..|++++.++ |++..++..+.++.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999988887653
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.85 E-value=1.3e-20 Score=114.15 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
+.-.|..++.+.+ +++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++++++|
T Consensus 16 ~~~~G~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------ 78 (126)
T 4gco_A 16 EKNKGNEYFKKGD-----------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS------ 78 (126)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------
Confidence 3445666665555 99999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
....+++.+|.++ ..+|++++|+..|+++++++|++..++..++.|+
T Consensus 79 -~~~~a~~~lg~~~----~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 79 -KFIKGYIRKAACL----VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -hhhHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 6777889999988 4449999999999999999999999999998874
No 18
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=4.6e-20 Score=124.57 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+..|..++...+ +++|+..|++++..+|++ +.+++.+|.+++..|++++|+..|++++...|..
T Consensus 18 ~~~~a~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~- 85 (261)
T 3qky_A 18 AFERAMEFYNQGK-----------YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID- 85 (261)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-
Confidence 4455555555555 999999999999999998 9999999999999999999999999999987732
Q ss_pred cchhhhhHHHHHhhhHHHHH----HHHhCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcc
Q 039398 83 LTEKEKGDALFKRAEVKMSM----NRRAGRVDSAIDDLTEAVKIQDDNVKAL-----------------CLLGECYEVKK 141 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~l~~~~~~~~~~-----------------~~l~~~~~~~~ 141 (172)
.....+++.+|.++... +..+|++++|+..|++++..+|+++.+. +.+|.++...|
T Consensus 86 ---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 86 ---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp ---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 24456788888887430 0005999999999999999999987665 88999999999
Q ss_pred CHHHHHHHHHHHHccCCCc---HHHHHHHH
Q 039398 142 MRDEAKTAYESALKIEPSW---TDAQAALD 168 (172)
Q Consensus 142 ~~~~A~~~~~~al~~~p~~---~~~~~~l~ 168 (172)
++++|+..|++++...|++ +.++..+.
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~ 192 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAM 192 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 9999999999999999984 44554443
No 19
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.4e-20 Score=142.66 Aligned_cols=129 Identities=16% Similarity=0.002 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++| ....+++.+|.++... |++
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------~~~~~~~~lg~~~~~~----g~~ 517 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-------GELAPKLALAATAELA----GNT 517 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-------TCSHHHHHHHHHHHHH----TCC
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHc----CCh
Confidence 99999999999999999999999999999999999999999999999998 6677788888888444 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+..+
T Consensus 518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999998776543
No 20
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.84 E-value=1.7e-20 Score=119.71 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhH-HHHHHHHhC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEV-KMSMNRRAG 107 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 107 (172)
.+++|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++.++| ....+++.+|.+ + ...|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~l~----~~~~ 93 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------ENAELYAALATVLY----YQAS 93 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------SCHHHHHHHHHHHH----HHTT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHH----HhcC
Confidence 388999999999999999999999999999999999999999999999887 456667777777 5 4449
Q ss_pred CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 108 RV--DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 108 ~~--~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++ ++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++......+..+
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 98 9999999999999999999999999999999999999999999999999987665554443
No 21
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=6.8e-20 Score=133.65 Aligned_cols=139 Identities=18% Similarity=0.106 Sum_probs=107.6
Q ss_pred H-HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHh---------hhHH
Q 039398 30 A-KQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKR---------AEVK 99 (172)
Q Consensus 30 ~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~ 99 (172)
+ ++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|. ...+...+.++... +++.
T Consensus 118 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~ 196 (474)
T 4abn_A 118 YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVM 196 (474)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHH
Confidence 7 89999999999999999999999999999999999999999999999885 33444444444444 4333
Q ss_pred HH-----------------------HHHHh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHH
Q 039398 100 MS-----------------------MNRRA--------GRVDSAIDDLTEAVKIQD---DNVKALCLLGECYEVKKMRDE 145 (172)
Q Consensus 100 ~~-----------------------~~~~~--------~~~~~A~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~ 145 (172)
.+ ++..+ |++++|+..|+++++++| .++.+++++|.++...|++++
T Consensus 197 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 197 DSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 21 23444 678888888888888888 778888888888888888888
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHh
Q 039398 146 AKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 146 A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
|+..|+++++++|++..++..+..
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 888888888888888777666544
No 22
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=5.9e-19 Score=112.47 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...| ....++..+|.++.. .|++
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~----~~~~ 92 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-------DNVKVATVLGLTYVQ----VQKY 92 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH----HTCH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHH----hcCH
Confidence 88999999999999999999999999999999999999999999998776 455667777777743 3889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..+++++..+|.++.++..+|.++...|++++|...+++++...|+++.++..+..
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999999999999888888889999999999999999999999999888888887766654
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=1.9e-19 Score=119.76 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~----~~~~~~ 175 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-------NDTEARFQFGMCL----ANEGML 175 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHH----HHcCCH
Confidence 67777777777777777777777777777777777777777777776665 3445566666666 344899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
++|+..+++++..+|+++.++..+|.++...|++++|...|++++.++|+++.++..+..+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999988888877654
No 24
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=2.3e-20 Score=141.71 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++| ....+++++|.++ ..+|++
T Consensus 59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~----~~~g~~ 127 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIH----KDSGNI 127 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999998 6778899999988 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
++|+..|+++++++|+++.++.++|.++..+|++++|.+.|++++++.|+.
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 999999999999999999999999999999999999999999999876654
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=2.4e-19 Score=121.23 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++. .|. .......+++.+|.++ ...|++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~---~~~~~~~~~~~lg~~~----~~~~~~ 90 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN---ATKAKSADFEYYGKIL----MKKGQD 90 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC---TTTCCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC---chhHHHHHHHHHHHHH----HHcccH
Confidence 99999999999999999999999999999999999999999999998 331 1122355678888888 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+.
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888776
No 26
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=3.1e-19 Score=126.66 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| ....++..+|.++ ...|++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~----~~~g~~ 321 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-------THADSLNNLANIK----REQGNI 321 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HTTTCH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------ccHHHHHHHHHHH----HHcCCH
Confidence 66666777777766776666777777777777777777777777766655 3444555555555 445888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+..
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 888888888888888888888888888888888888888888888888888877766654
No 27
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.83 E-value=1.3e-19 Score=109.88 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=98.3
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
+.+.++.++|..++..|+|++|+.+|+++++++| ....+++++|.++ ..+|++++|+..|+++++++|+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-------~~~~~~~nlg~~~----~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-------SNITFYNNKAAVY----FEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHhHHHHH----HHhhhHHHHHHHHHHHHHhCcc
Confidence 4566788999999999999999999999999998 6677888888888 4459999999999999999886
Q ss_pred CH-------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 126 NV-------KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 126 ~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
+. .++..+|.++..+|++++|++.|++++..+|+ ++....|..+.
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 53 58899999999999999999999999999885 55566666654
No 28
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=4.5e-19 Score=125.80 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+| ....++..+|.++ ..+|++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~----~~~g~~ 151 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-------DLYCVRSDLGNLL----KALGRL 151 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-------TCTHHHHHHHHHH----HTTSCH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHccCH
Confidence 66777777777777777777777777777777777777777777776666 3333344444444 333666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++.++|++..++..+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666655554443
No 29
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.83 E-value=1.8e-20 Score=116.29 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-----chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-----TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
....+..+|..++..|+|++|+..|++++.++|..+. ..+....+|.++|.++ ..+|+|++|+..|.++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al----~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL----AGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHH----HHCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999885321 1122445889999888 555999999999999999
Q ss_pred h-------CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 122 I-------QDDNVKAL----CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 122 ~-------~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+ +|++..+| +++|.++..+|++++|+..|+++++++|++..+...+.++
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9 99999999 9999999999999999999999999999887665555544
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-19 Score=119.10 Aligned_cols=130 Identities=14% Similarity=0.075 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+| ....+++.+|.++ ...|++
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~----~~~~~~ 189 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-------EDARGYSNRAAAL----AKLMSF 189 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHH----HHhCCH
Confidence 34444444444448899999999999999999999999999999999887 4567788888887 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccC------CCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIE------PSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~l 170 (172)
++|+..+++++..+|+++.++..+|.++...|++++|...|+++++++ |++..++..|.+.
T Consensus 190 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 9999999888764
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=4.2e-19 Score=124.95 Aligned_cols=136 Identities=17% Similarity=0.198 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhh----------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKE---------------------- 87 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~---------------------- 87 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.+.|.....+..
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 7777888888887788777888888888888888888888888777766532221111
Q ss_pred -----------------hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 039398 88 -----------------KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150 (172)
Q Consensus 88 -----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 150 (172)
...+++.+|.++ ..+|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLF----HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234555566555 44488999999999999888888888999999999999999999999
Q ss_pred HHHHccCCCcHHHHHHHHh
Q 039398 151 ESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 151 ~~al~~~p~~~~~~~~l~~ 169 (172)
++++.++|++..++..+..
T Consensus 271 ~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 271 TRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHH
Confidence 9999888888888776654
No 32
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.82 E-value=4.8e-19 Score=121.44 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| .........+..+ ...++.
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-------~~~~~~~~~~~~l----~~~~~~ 201 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-------DTRYQGLVAQIEL----LXQAAD 201 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------SHHHHHHHHHHHH----HHHHTS
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------chHHHHHHHHHHH----Hhhccc
Confidence 99999999999999999999999999999999999999999999998877 2223333333333 333888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc--HHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW--TDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~l 170 (172)
++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+..+
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 7777766543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-18 Score=117.00 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhccCccc-------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-------------------
Q 039398 30 AKQAEAEADKAISFDYKD-------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTL------------------- 83 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~------------------- 83 (172)
+++|+..+++++..+|++ +.++..+|.++...|++++|+..+++++.+.|....
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999999999887 799999999999999999999999999985442100
Q ss_pred chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 84 TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
..+....+++.+|.++ ...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEY----FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp CCHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCcchHHHHHHHHHHH----HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence 1125566677777777 455999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 039398 164 QAALDRL 170 (172)
Q Consensus 164 ~~~l~~l 170 (172)
+..+..+
T Consensus 210 ~~~l~~~ 216 (258)
T 3uq3_A 210 YIRKATA 216 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=4.1e-19 Score=118.07 Aligned_cols=129 Identities=23% Similarity=0.268 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~----~~~~~~ 141 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-------ENGDLFYMLGTVL----VKLEQP 141 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------CSHHHHHHHHHHH----HHTSCH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHhccH
Confidence 66666666666666666666666666666666666666666666666554 3344555555555 344777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+..
T Consensus 142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 201 (243)
T 2q7f_A 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777776665544
No 35
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.82 E-value=2.7e-19 Score=112.94 Aligned_cols=111 Identities=21% Similarity=0.118 Sum_probs=101.3
Q ss_pred cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 43 FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
.++.++..++.+|.+++..|++++|+..|++++.++| ....+++.+|.++ ..+|++++|+..|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-------ANPIYLSNRAAAY----SASGQHEKAAEDAELATVV 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------cCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh
Confidence 3566788999999999999999999999999999888 5677888888888 4459999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 123 QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
+|+++.+++.+|.++..+|++++|+..|++++.++|++..++
T Consensus 75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 999999999999999999999999999999999999988743
No 36
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=2.2e-20 Score=130.71 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--------chhhhhHHHHHhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL--------TEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 101 (172)
+++|+..+++++..+|+++.++..+|.+++..|++++|+..|++++.+.|.... .......+++++|.++
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~-- 206 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH-- 206 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH--
Confidence 566777788888888999999999999999999999999999999998884321 1122257788888888
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..+..+
T Consensus 207 --~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 207 --LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp --HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred --HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5559999999999999999999999999999999999999999999999999999999988877654
No 37
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.1e-18 Score=122.81 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
.+..|..++...+ +++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|.....+
T Consensus 68 ~~~~~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 68 AFEEGLKRLKEGD-----------LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp HHHHHHHHHHHTC-----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCC-----------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555544 99999999999999999999999999999999999999999999999998555555
Q ss_pred hhhhHHHHHhhhHHHH---------------------------------HHHHhCCHHHHHHHHHHHHHhCCC--CHHHH
Q 039398 86 KEKGDALFKRAEVKMS---------------------------------MNRRAGRVDSAIDDLTEAVKIQDD--NVKAL 130 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~ 130 (172)
...+.++...|++..+ ++...|++++|+..|++++..+|. ++.++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 5555555555443321 223456778888888888888888 89999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..+|.++...|++++|+..|++++..+|+++.++..+..+
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999988777643
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=6e-18 Score=113.24 Aligned_cols=129 Identities=13% Similarity=0.011 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC--CCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS--IPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++. ..| ....+++.+|.++ ...|
T Consensus 87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~la~~~----~~~g 155 (252)
T 2ho1_A 87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-------ERSRVFENLGLVS----LQMK 155 (252)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT-------THHHHHHHHHHHH----HHTT
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc-------ccHHHHHHHHHHH----HHcC
Confidence 88889999999888898888999999999999999999999999888 444 4556677777776 4448
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++++|+..+++++..+|.++.++..+|.++...|++++|...|++++...|++..++..+..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 217 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888877665543
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-18 Score=120.81 Aligned_cols=136 Identities=18% Similarity=0.058 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--chhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL--TEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...+.... ..+....+++.+|.++ ..+|
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC----RKLK 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH----HHTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH----HHhc
Confidence 888999999999999999999999999999999999999999998876532211 1134456778888887 4559
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++++|+..+++++..+|+++.++..+|.++...|++++|...|+++++++|+++.++..+..
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887765
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=6.5e-18 Score=117.88 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhh------------hhHHHHHhhh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKE------------KGDALFKRAE 97 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~ 97 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.....+.. .+.++...|+
T Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777777777777777777777777777788888877777777766643331110 1112222222
Q ss_pred HHH---------------------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 039398 98 VKM---------------------------SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150 (172)
Q Consensus 98 ~~~---------------------------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 150 (172)
+.. .++...|++++|+..+++++..+|+++.+++.+|.++...|++++|...|
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111 13456699999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcHHHHHHHHhh
Q 039398 151 ESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 151 ~~al~~~p~~~~~~~~l~~l 170 (172)
+++++++|+++.++..|.++
T Consensus 330 ~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 330 EAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHH
Confidence 99999999999988887765
No 41
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.81 E-value=1.9e-18 Score=113.09 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc
Q 039398 4 KRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL 83 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 83 (172)
..++..|..++...+ +++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~g~~~~~~~~-----------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKD-----------WKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---- 68 (213)
T ss_dssp HHHHHHHHHHHHTTC-----------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 344555665555555 999999999996 34 788999999999999999999999999999887
Q ss_pred chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHH
Q 039398 84 TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV----------------KALCLLGECYEVKKMRDEAK 147 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~ 147 (172)
....+++.+|.++ ..+|++++|+..|++++...|.+. .+++++|.++...|++++|.
T Consensus 69 ---~~~~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 69 ---HLAVAYFQRGMLY----YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ---TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---cchHHHHHHHHHH----HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 5667888888888 445999999999999999888776 99999999999999999999
Q ss_pred HHHHHHHccCCCcH
Q 039398 148 TAYESALKIEPSWT 161 (172)
Q Consensus 148 ~~~~~al~~~p~~~ 161 (172)
..|++++.++|++.
T Consensus 142 ~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 142 EQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTTCCSGG
T ss_pred HHHHHHHHcCcccc
Confidence 99999999999764
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.8e-18 Score=113.50 Aligned_cols=130 Identities=15% Similarity=0.008 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ-GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|+..+++++..+|+++.++..+|.++... |++++|+..+++++. .| ..+....+++.+|.++ ...|+
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~~~~~l~~~~----~~~~~ 128 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP----TYPTPYIANLNKGICS----AKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST----TCSCHHHHHHHHHHHH----HHTTC
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc----CCcchHHHHHHHHHHH----HHcCC
Confidence 67777777777777777777777777777777 777777777777776 21 1114455666666666 44488
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC-CcHHHHHHHH
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP-SWTDAQAALD 168 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 168 (172)
+++|+..+++++...|.++.++..+|.++...|++++|...+++++..+| ++..++..+.
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888 7777665543
No 43
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=3.5e-19 Score=113.69 Aligned_cols=129 Identities=14% Similarity=0.016 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ... .+...+.+.. ...+..
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~-------~~~~~~~~~~---~~~~~~ 90 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS-------YKSLIAKLEL---HQQAAE 90 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH-------HHHHHHHHHH---HHHHTS
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH-------HHHHHHHHHH---Hhhccc
Confidence 99999999999999999999999999999999999999999999998776 221 1111222211 111334
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc--HHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW--TDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~ 169 (172)
.+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+..
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999975 457766644
No 44
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.81 E-value=6.6e-19 Score=110.91 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCC--------CCCCcc---chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHH
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSI--------PAVKTL---TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDD 115 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 115 (172)
.+..+..+|..++..|+|++|+..|.+++.+ +|.... ..+....+++++|.++... |++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI----GDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHH
Confidence 4677899999999999999999999999987 221110 0335667888899888544 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH-HHHHHHHhh
Q 039398 116 LTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT-DAQAALDRL 170 (172)
Q Consensus 116 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~l 170 (172)
+.+++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...|..+
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 666666554
No 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.81 E-value=9.5e-19 Score=130.08 Aligned_cols=128 Identities=19% Similarity=0.110 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++| ....+++.+|.++ ..+|++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~ 73 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-------GHPEAVARLGRVR----WTQQRH 73 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHCCCH
Confidence 55666666666666666666666666666666666666666666666665 4445555555555 333666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..|+++++.+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+.
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666555444
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.81 E-value=3.1e-18 Score=103.60 Aligned_cols=120 Identities=25% Similarity=0.297 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...| .....++.+|.++ ...|++
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~----~~~~~~ 85 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAY----YKQGDY 85 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HTTTCH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-------CchHHHHHHHHHH----HHhcCH
Confidence 99999999999999999999999999999999999999999999998776 4455677777776 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
++|+..+.+++...|.+..++..+|.++...|++++|...+++++..+|++
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999998863
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=105.64 Aligned_cols=123 Identities=20% Similarity=0.149 Sum_probs=110.5
Q ss_pred hccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 039398 41 ISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120 (172)
Q Consensus 41 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 120 (172)
...+|.+...++.+|..++..|++++|+..|++++..+|. ......+++.+|.++ ..+|++++|+..+++++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT----PQDQAVLHRNRAACH----LKLEDYDKAETEASKAI 92 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC----HHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc----chHHHHHHHHHHHHH----HHHccHHHHHHHHHHHH
Confidence 4456889999999999999999999999999999999882 222367788888887 44599999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 121 KIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
..+|+++.+++.+|.++...|++++|...|++++.++|++..++..+.++.
T Consensus 93 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 93 EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888764
No 48
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1.6e-18 Score=113.51 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHH----------------hhhHHHHHHHHhCCHH
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFK----------------RAEVKMSMNRRAGRVD 110 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 110 (172)
+++.++..|..++..|++++|+..|++++..+| ....+++. +|.++ ..+|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~g~~~ 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-------DRTEMYYWTNVDKNSEISSKLATELALAY----KKNRNYD 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-------HHHHHHHHHHSCTTSHHHHHHHHHHHHHH----HHTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHhhhcchhhhhHHHHHHHHHHH----HHCCCHH
Confidence 567889999999999999999999999999988 56666766 78777 5559999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 111 SAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 111 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+..
T Consensus 72 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 130 (208)
T 3urz_A 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130 (208)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887754
No 49
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.81 E-value=9e-19 Score=106.99 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=105.1
Q ss_pred ccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 42 SFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
..+|.++..++.+|.+++..|++++|+..|++++..+| ....+++.+|.++ ..+|++++|+..+++++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------LVAVYYTNRALCY----LKMQQPEQALADCRRALE 71 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-------CcHHHHHHHHHHH----HHhcCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999888 5667888888888 445999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-----cHHHHHHHHhh
Q 039398 122 IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS-----WTDAQAALDRL 170 (172)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~l 170 (172)
.+|+++.+++.+|.++...|++++|+..|++++.++|+ +..++..+..+
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 77777766554
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.1e-18 Score=119.23 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchh-----------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEK----------------------- 86 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----------------------- 86 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.....+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 788888888888888888888888888888888888888888888877775443221
Q ss_pred -------------------h--hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 039398 87 -------------------E--KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDE 145 (172)
Q Consensus 87 -------------------~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (172)
. ...+++.+|.++ ...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF----NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 1 234455555555 555999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 146 AKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 146 A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|+..|++++.++|++..++..+..+
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999988887766543
No 51
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=7.1e-18 Score=116.64 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQG-FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|+..+++++..+|+++.+++.+|.++...| ++++|+..+++++..+| ....+++.+|.++... |+
T Consensus 72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~----~~ 140 (330)
T 3hym_B 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-------TYGPAWIAYGHSFAVE----SE 140 (330)
T ss_dssp HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-------TCTHHHHHHHHHHHHH----TC
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHc----cC
Confidence 889999999999999999999999999999999 99999999999999888 5566778888887444 99
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+++|+..+++++...|++..++..+|.++...|++++|...|++++..+|+++.++..+..+
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888776543
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=5.3e-18 Score=111.29 Aligned_cols=129 Identities=21% Similarity=0.175 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh-CC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA-GR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ... |+
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~----~~~~~~ 92 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-------DSAEINNNYGWFL----CGRLNR 92 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HTTTCC
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------CChHHHHHHHHHH----HHhcCc
Confidence 88999999999999999999999999999999999999999999998777 4556677788887 777 88
Q ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 109 VDSAIDDLTEAVK--IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 109 ~~~A~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++|+..+++++. ..|.+..++..+|.++...|++++|+..|++++..+|++..++..+..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999988 666667889999999999999999999999999999988887776654
No 53
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=5.8e-19 Score=109.99 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+.+|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++| ....+++.+|.++... |++
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~----~~~ 115 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-------TQKDLVLKIAELLCKN----DVT 115 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH----CSS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHc----CCh
Confidence 99999999999999999999999999999999999999999999999998 6777888899888444 999
Q ss_pred HHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 110 DSAIDD-LTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 110 ~~A~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
++|+.. ++++++++|+++.++..++.++...|+
T Consensus 116 ~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 116 DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 887765 599999999999999999999988875
No 54
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=2.9e-18 Score=113.56 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCC
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVK 81 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~ 81 (172)
..+..|..++...+ +++|+..|++++...|++ +.+++.+|.+++..|++++|+..|+++++..|..
T Consensus 6 ~~~~~a~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 6 EIYATAQQKLQDGN-----------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 34556666666666 999999999999998876 4789999999999999999999999999988843
Q ss_pred ccchhhhhHHHHHhhhHHHHH--------------HHHhCCHHHHHHHHHHHHHhCCCCHHHH-----------------
Q 039398 82 TLTEKEKGDALFKRAEVKMSM--------------NRRAGRVDSAIDDLTEAVKIQDDNVKAL----------------- 130 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~A~~~~~~~l~~~~~~~~~~----------------- 130 (172)
. ....+++.+|.++... +..+|++++|+..|++++..+|+++.++
T Consensus 75 ~----~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 75 P----NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp T----THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 3 2233566666655321 1234789999999999999999887544
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+.+|.++...|++++|+..|+++++..|+++.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 57788999999999999999999999998874
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=9.4e-19 Score=111.53 Aligned_cols=123 Identities=13% Similarity=0.096 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~----~~~~~~ 126 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-------INFNVRFRLGVAL----DNLGRF 126 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------HhHHHHHHHHHHH----HHcCcH
Confidence 89999999999999999999999999999999999999999999999877 4556777788777 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|++...
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999999999999999999999999999999999887653
No 56
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.1e-18 Score=118.91 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHH--------HH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVK--------MS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 101 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+| .......++..++.+. ..
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP----SEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555443 1113344444443221 12
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+..+
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 235568888888888888888888888888899999999999999999999999888888888776543
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=2.1e-18 Score=115.50 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~----~~~g~~ 121 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------RNARVLNNYGGFL----YEQKRY 121 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHH----HHHhHH
Confidence 88999999999999999999999999999999999999999999999877 4566777788777 445999
Q ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVK--IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++|+..+++++. ..|.++.++..+|.++...|++++|+..|++++..+|.+..++..+..+
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 999999999999 8888899999999999999999999999999999999999888776543
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=1.4e-18 Score=117.26 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhccCcc---cHHHHHHHHHHHHH--------hCChhHHHHHHHHhhCCCCCCccchhhh----------
Q 039398 30 AKQAEAEADKAISFDYK---DAAAHILKALALDL--------QGFKTSALESFDLALSIPAVKTLTEKEK---------- 88 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~~---------- 88 (172)
+++|+..|++++..+|+ .+.+++.+|.++.. .|++++|+..|++++...|.........
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 99999999999999885 46789999999999 9999999999999999888544322111
Q ss_pred hHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHc
Q 039398 89 GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD---NVKALCLLGECYEVK----------KMRDEAKTAYESALK 155 (172)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~----------~~~~~A~~~~~~al~ 155 (172)
...++.+|.++ ...|++++|+..|++++..+|+ .+.+++.+|.++..+ |++++|+..|++++.
T Consensus 148 ~~~~~~la~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 148 ARKQYEAARLY----ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 11126667776 5559999999999999999998 467999999999977 999999999999999
Q ss_pred cCCCcHHHHHHHHh
Q 039398 156 IEPSWTDAQAALDR 169 (172)
Q Consensus 156 ~~p~~~~~~~~l~~ 169 (172)
.+|+++.+......
T Consensus 224 ~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 224 IFPDSPLLRTAEEL 237 (261)
T ss_dssp HCTTCTHHHHHHHH
T ss_pred HCCCChHHHHHHHH
Confidence 99999766554433
No 59
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=6.2e-18 Score=118.82 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhccCcc--cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 29 LAKQAEAEADKAISFDYK--DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
.+++|+..|++++..+|+ ++.++..+|.++...|++++|+..+++++.++| ....+++.+|.++ ...
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~----~~~ 264 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-------NDYLLWNKLGATL----ANG 264 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHT
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHH----HHc
Confidence 399999999999999999 899999999999999999999999999999887 5567788888888 445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc-----------HHHHHHHHh
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW-----------TDAQAALDR 169 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~ 169 (172)
|++++|+..|++++..+|+++.++..+|.++...|++++|...|++++.+.|++ ..+|..+..
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 777776654
No 60
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-18 Score=102.63 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=106.5
Q ss_pred cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 43 FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
..|.++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++ ...|++++|+..+++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-------KDAKLYSNRAACY----TKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-------TCHHHHHHHHHHH----TTTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHH----HHhccHHHHHHHHHHHHHh
Confidence 3577899999999999999999999999999999987 4567788888877 4559999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 123 QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+..+
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777654
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=4.9e-18 Score=126.25 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++| ....+++.+|.++ ..+|++
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~----~~~g~~ 107 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP-------EHPGIALWLGHAL----EDAGQA 107 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999888 5677888888888 455999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVK---KMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
++|+..|+++++.+|++..++..+|.++..+ |++++|.+.|+++++.+|++...+..+
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 9999999999999999999999999999999 999999999999999999976655443
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=4.3e-18 Score=115.07 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhcc----CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 28 SLAKQAEAEADKAISF----DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
..+++|+..|++++.. +|.++.+++.+|.++...|++++|+..|++++..+| ....+++.+|.++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~---- 87 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYL---- 87 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHH----
Confidence 4499999999999987 456788999999999999999999999999999887 5566788888887
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++....
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 4449999999999999999999999999999999999999999999999999999987543
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=8.1e-19 Score=133.01 Aligned_cols=129 Identities=18% Similarity=0.088 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHh--------ccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH
Q 039398 30 AKQAEAEADKAI--------SFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (172)
+++|+..+++++ ..+|+++.+++.+|.++...|++++|+..|+++++.+| ....+++.+|.++..
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-------WRWRLVWYRAVAELL 479 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-------chHHHHHHHHHHHHH
Confidence 899999999999 89999999999999999999999999999999999887 677788899988854
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
. |++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++..++..+..+
T Consensus 480 ~----g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 480 T----GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp H----TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 4 999999999999999999999999999999999999999 999999999999999999877654
No 64
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=1.4e-17 Score=98.66 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.+..++.+|.++...|++++|+..+++++..+| ....+++.+|.++.. .|++++|+..+++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-------HNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCccc
Confidence 467899999999999999999999999999887 456678888888744 499999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhhh
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRLV 171 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 171 (172)
+.++..+|.++...|++++|...|++++..+|+++.++..+..+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887764
No 65
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=6.7e-18 Score=115.97 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++ |+++.++..+|.++..+|++++|+..+++++..+|... ...++..+..++...|++
T Consensus 117 ~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~---------~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 117 PDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT---------LTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH---------HHHHHHHHHHHHhCchHH
Confidence 7777777766 67777778888888888888888888888877666321 111111111111223667
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..|++++..+|+++.+++.+|.++..+|++++|...|++++..+|+++.++..+.
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777776665543
No 66
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.79 E-value=2e-18 Score=103.73 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
..++.+|..+...|++++|+..+++++..+| ....+++.+|.++ ..+|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEP-------EREEAWRSLGLTQ----AENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3578999999999999999999999999988 6778888899888 4449999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+++.+|.++...|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998764
No 67
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1e-17 Score=124.64 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|...........++..+|.++ ...|++
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~----~~~g~~ 532 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY----RKLKMY 532 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH----HHhcCH
Confidence 8899999999999999999999999999999999999999999998763311111112366778888887 555999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++|+..++++++.+|+++.++..+|.++...|++++|.+.|+++++++|+++.++..|..+
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765
No 68
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.78 E-value=1.5e-19 Score=131.28 Aligned_cols=137 Identities=17% Similarity=0.097 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc--------chhhhhHHHHHhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL--------TEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 101 (172)
+++|+..++.++...|..+..+..+|.+++..|+|++|+..|++++.+.|.... .......+++++|.++
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~-- 327 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY-- 327 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH--
Confidence 556777777888888999999999999999999999999999999998774321 1112256778888888
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.++|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+..+
T Consensus 328 --~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 328 --LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp --HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred --HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5559999999999999999999999999999999999999999999999999999999888777654
No 69
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.77 E-value=6e-18 Score=102.49 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|.....+...+.+++.+|.++. .+|++
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~----~~~~~ 99 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ----KQNDL 99 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----HTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH----HcCCH
Confidence 99999999999999999999999999999999999999999999999988766677778889999999984 44999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
++|+..|++++..+|+ ++....+
T Consensus 100 ~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 100 SLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHhhCcC-HHHHHHH
Confidence 9999999999999885 5554444
No 70
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.1e-17 Score=114.13 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
...+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...| ....++..+|.++ ...
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~----~~~ 219 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-------DDAQLWNKLGATL----ANG 219 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHT
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHc
Confidence 34589999999999999999999999999999999999999999999999887 5566778888887 445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC------------cHHHHHHHHh
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS------------WTDAQAALDR 169 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~ 169 (172)
|++++|+..++++++.+|+++.++..+|.++...|++++|...|++++...|+ +..++..+..
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 7777766654
No 71
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.77 E-value=1.6e-17 Score=100.11 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=103.8
Q ss_pred ccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 42 SFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
..+|.++..++.+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++++|+..+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-------ANAVYFCNRAAAY----SKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH----HHhhchHHHHHHHHHHHh
Confidence 34567788999999999999999999999999998877 4566777888877 444999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 122 IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+|+++.+++.+|.++...|++++|...|++++..+|+++.++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888776543
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=3.2e-17 Score=110.77 Aligned_cols=123 Identities=19% Similarity=0.136 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|. ...+++.+|.++. ..|++
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~----~~g~~ 127 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------YNYAHLNRGIALY----YGGRD 127 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CTHHHHHHHHHHH----HTTCH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-------ccHHHHHHHHHHH----HhccH
Confidence 899999999999999999999999999999999999999999999998873 3455555665553 33666
Q ss_pred HHHHHHHHHHHHhCCCC---------------------------------------------------------------
Q 039398 110 DSAIDDLTEAVKIQDDN--------------------------------------------------------------- 126 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~--------------------------------------------------------------- 126 (172)
++|+..|++++..+|++
T Consensus 128 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 66666666666555554
Q ss_pred -------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 127 -------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 127 -------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
+.++..+|.++...|++++|...|++++..+|++...
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 3567788999999999999999999999999976553
No 73
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.77 E-value=1.8e-18 Score=112.25 Aligned_cols=137 Identities=18% Similarity=0.088 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchh---------hhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEK---------EKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~ 100 (172)
++++.+.++......+..+..+..+|.+++..|+|++|+..|++++.+.|....... ....+++.+|.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~- 98 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY- 98 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH-
Confidence 444444444444445566788999999999999999999999999998774431100 0136777888877
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
..+|++++|+.++++++..+|.++.+++.+|.++..+|++++|+..|++++.++|++..++..+..+
T Consensus 99 ---~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 99 ---NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 4559999999999999999999999999999999999999999999999999999999988877654
No 74
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.77 E-value=1.8e-17 Score=104.10 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+| ....+++.+|.++ ..+|++
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~~a~~~----~~~~~~ 97 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------KYIKGYYRRAASN----MALGKF 97 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHH----HHhccH
Confidence 99999999999999999999999999999999999999999999999887 5566788888887 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGEC--YEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~ 156 (172)
++|+..|++++..+|++..++..++.+ +...|++++|+..+.++..+
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999888555554 88889999999999887644
No 75
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=2.8e-17 Score=118.41 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc---cchhhhhHH-----HHHhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT---LTEKEKGDA-----LFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~~~-----~~~~~~~~~~ 101 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|... ..+...... ++..|..+
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 153 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA-- 153 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 88899999999999999999999999999999999999999999998887433 222111111 12223323
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++..+|+++.++..+.
T Consensus 154 --~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 218 (450)
T 2y4t_A 154 --FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218 (450)
T ss_dssp --HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHH
T ss_pred --HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33477777777777777777766666777777777777777777777777666666666665554
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.77 E-value=1.6e-17 Score=116.20 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhccCccc---------------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD---------------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFK 94 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (172)
+++|+..|++++..+|++ ..++.++|.++...|++++|+.+|++++.++| ....+++.
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~ 235 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-------NNEKGLSR 235 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHH
Confidence 999999999999999998 69999999999999999999999999999988 66778899
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHc
Q 039398 95 RAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEA-KTAYESALK 155 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~ 155 (172)
+|.++ ..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++.+.
T Consensus 236 lg~~~----~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 236 RGEAH----LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHH----HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888 4449999999999999999999999999999999999999999 556777664
No 77
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.77 E-value=1.9e-17 Score=100.01 Aligned_cols=114 Identities=18% Similarity=0.059 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN-- 126 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-- 126 (172)
.+++.+|.+++..|++++|+..|++++...|.. .....+++.+|.++ ..+|++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~lg~~~----~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNG----VYTPNALYWLGESY----YATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS----TTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----cccHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHCCCCcc
Confidence 457889999999999999999999999888732 22236778888888 45599999999999999999999
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 127 -VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 127 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.+++.+|.++..+|++++|+..|++++...|+++.+...+.++
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 89999999999999999999999999999999999888776655
No 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.1e-16 Score=110.56 Aligned_cols=136 Identities=21% Similarity=0.167 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhh----------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKE---------------------- 87 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~---------------------- 87 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|........
T Consensus 71 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 8889999999999999999999999999999999999999999988877744332211
Q ss_pred --------------------hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 039398 88 --------------------KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAK 147 (172)
Q Consensus 88 --------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~ 147 (172)
...+++.+|.++ ...|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLY----NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 122333334433 55699999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHh
Q 039398 148 TAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 148 ~~~~~al~~~p~~~~~~~~l~~ 169 (172)
..|++++..+|++..++..+..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999998888776654
No 79
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.76 E-value=8.9e-18 Score=103.99 Aligned_cols=110 Identities=19% Similarity=0.118 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
....+++|+..++++++++|+++++|+++|.++...++++.+....
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al---------------------------------- 59 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK---------------------------------- 59 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------------------
Confidence 4445999999999999999999999999999999988776554422
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK-----------MRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+.+++|+..|+++++++|++..+|+++|.+|..+| ++++|+++|+++++++|++...+..+...
T Consensus 60 -~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 60 -QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp -HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23678888888888888888888888888888774 78888888888888888888877776543
No 80
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.2e-17 Score=112.88 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhccCccc----HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD----AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+..+++++. .|.+ ..++..+|.++...|++++|+..+++++..+| ....++..+|.++ ..
T Consensus 53 ~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~----~~ 120 (272)
T 3u4t_A 53 YDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-------TRLDMYGQIGSYF----YN 120 (272)
T ss_dssp HHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHH----HH
Confidence 8999999999999 4433 45689999999999999999999999999887 5566788888888 44
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+|++++|+..|++++..+|.++.+++.+|......+++++|+..|++++..+|++..++..+..+
T Consensus 121 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 49999999999999999999999999999555556699999999999999999998887666543
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.76 E-value=7.4e-17 Score=96.36 Aligned_cols=117 Identities=26% Similarity=0.335 Sum_probs=102.2
Q ss_pred cCccc-HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 43 FDYKD-AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 43 ~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
.+|.. +.+++.+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++++|+..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAY----YKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHH----HHhCCHHHHHHHHHHHHH
Confidence 34555 78899999999999999999999999998876 4556777788777 444999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 122 IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+|.++.++..+|.++...|++++|...|++++..+|+++.++..+..+
T Consensus 72 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877654
No 82
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.76 E-value=4.5e-17 Score=117.29 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++ ..+|++
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~----~~~g~~ 110 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-------DFTAARLQRGHLL----LKQGKL 110 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999887 5567788888888 445999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNV---KALCLL------------GECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++..+|++. .++..+ |.++...|++++|+..|++++..+|.+..++..+..
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999988 776655 667999999999999999999999999988877654
No 83
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5.2e-17 Score=111.56 Aligned_cols=127 Identities=15% Similarity=-0.031 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHH--HHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKAL--ALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~--~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++|+..|++++..+|++.......+. ++...|++++|+..|++++...| ....+++.+|.++ ..+|
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-------~~~~~~~~la~~~----~~~g 214 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-------PTLLLLNGQAACH----MAQG 214 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHH----HHTT
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHcC
Confidence 999999999999999998755554443 33345899999999999999887 5677788888888 4459
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHccCCCcHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDE-AKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l 167 (172)
++++|+..|++++..+|+++.++.++|.++...|++++ +.++++++++++|+++.+....
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999976 5689999999999999876544
No 84
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-17 Score=99.52 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT 84 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 84 (172)
..+..|..++...+ +++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|
T Consensus 6 ~~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----- 69 (126)
T 3upv_A 6 EARLEGKEYFTKSD-----------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP----- 69 (126)
T ss_dssp HHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHhcC-----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----
Confidence 34455666655555 99999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 039398 85 EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ------DDNVKALCLLGECYEV 139 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~l~~~~~~ 139 (172)
....+++.+|.++ ..+|++++|+..|++++.++ |++..++..++.+...
T Consensus 70 --~~~~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 --NFVRAYIRKATAQ----IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHH----HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 6677888899888 44499999999999999999 9999999988887654
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=2.4e-17 Score=120.23 Aligned_cols=133 Identities=16% Similarity=0.061 Sum_probs=121.8
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCh-hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFK-TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
....+++++..+.+.....|.++.+++.+|.++...|++ ++|+..|+++++++| ....+++.+|.++...
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~-- 150 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-------ELVEAWNQLGEVYWKK-- 150 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHc--
Confidence 334488889999999999999999999999999999999 999999999999988 6677889999888544
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK---------KMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|++++|+..|+++++.+|+ ..++..+|.++... |++++|+..|++++.++|++..+|..+..+
T Consensus 151 --g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 151 --GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp --TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999 79999999999999 999999999999999999999998877653
No 86
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.75 E-value=7.7e-18 Score=98.95 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=98.8
Q ss_pred cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 43 FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 43 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
++|+++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++ ..+|++++|+..+++++..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~~a~~~----~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-------EESKYWLMKGKAL----YNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh
Confidence 3688899999999999999999999999999999887 4566778888877 4459999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCCCcH
Q 039398 123 QDD--NVKALCLLGECYEVK-KMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 123 ~~~--~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~ 161 (172)
+|. +..++..+|.++... |++++|++.+++++...|+++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999 999999999999999 999999999999999999764
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=3.9e-17 Score=101.68 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++| ....+++.+|.++ ..+|++
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------~~~~~~~~lg~~~----~~lg~~ 120 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------NDYTPVFHTGQCQ----LRLKAP 120 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-------SCCHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-------CCcHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999998 6677888999888 444999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 039398 110 DSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~ 127 (172)
++|+..|++++++.|+.+
T Consensus 121 ~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 121 LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhCCCHH
Confidence 999999999999999864
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.1e-16 Score=109.22 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH-------hCCh-------hHHHHHHHHhhC-CCCCCccchhhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL-------QGFK-------TSALESFDLALS-IPAVKTLTEKEKGDALFK 94 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 94 (172)
.++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++| ....+|..
T Consensus 32 ~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-------~~~~~~~~ 104 (308)
T 2ond_A 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------KNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-------ccHHHHHH
Confidence 4899999999999999999999999999874 5886 999999999999 687 56667888
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 95 RAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK-ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
+|.++ ...|++++|+..|+++++.+|.++. +|..+|.++...|++++|...|+++++.+|.+..+|....
T Consensus 105 ~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 175 (308)
T 2ond_A 105 YADYE----ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175 (308)
T ss_dssp HHHHH----HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred HHHHH----HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 88877 4449999999999999999999887 8999999999999999999999999999988877765543
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=3.1e-16 Score=108.34 Aligned_cols=140 Identities=12% Similarity=0.010 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHHH------
Q 039398 30 AKQAEAEADKAIS-FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKMS------ 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~------ 101 (172)
+++|+..|++++. ++|++..+|..+|.++...|++++|...|++++.+.|.... .+...+.++...|....+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5899999999999 69999999999999999999999999999999998885443 344444433333332221
Q ss_pred -----------------H-HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc---CCC-
Q 039398 102 -----------------M-NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI---EPS- 159 (172)
Q Consensus 102 -----------------~-~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~- 159 (172)
+ +...|++++|+..|++++..+|+++.+|..+|.++...|++++|...|++++.. .|+
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 0 011477777777777777777777777777777777777777777777777774 443
Q ss_pred cHHHHHHHHh
Q 039398 160 WTDAQAALDR 169 (172)
Q Consensus 160 ~~~~~~~l~~ 169 (172)
...+|..+..
T Consensus 240 ~~~l~~~~~~ 249 (308)
T 2ond_A 240 SGEIWARFLA 249 (308)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556665543
No 90
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=1.7e-16 Score=116.54 Aligned_cols=138 Identities=20% Similarity=0.111 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH--------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS-------- 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 101 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.....+...+.++...|+...+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777665444444444444444443321
Q ss_pred ---------------------HHHHh----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 039398 102 ---------------------MNRRA----------GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAY 150 (172)
Q Consensus 102 ---------------------~~~~~----------~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 150 (172)
++..+ |++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 23445 89999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcHHHHHHH
Q 039398 151 ESALKIEPSWTDAQAAL 167 (172)
Q Consensus 151 ~~al~~~p~~~~~~~~l 167 (172)
++++.++|++......+
T Consensus 486 ~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 486 EDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHC--CHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHH
Confidence 99999999988765443
No 91
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=8.1e-17 Score=118.27 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+ +.++..+|.++...|++++|+..+++++..+| ....+++.+|.++ ...|++
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~----~~~~~~ 326 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-------EYPPTYYHRGQMY----FILQDY 326 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-------CCHHHHHHHHHHH----HhcCCH
Confidence 68888888888888888 88888888888888899999999988888777 4566677777777 344888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+..
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888877766654
No 92
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.73 E-value=4.7e-17 Score=102.54 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++| ....+++.+|.++ ..+|++
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~ 95 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------KYSKAWSRLGLAR----FDMADY 95 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHccCH
Confidence 99999999999999999999999999999999999999999999999988 5677888899888 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEV 139 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 139 (172)
++|+..|+++++++|++..+++.++.....
T Consensus 96 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 96 KGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999988777765543
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=7e-17 Score=110.88 Aligned_cols=129 Identities=17% Similarity=0.113 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHh-CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQ-GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+++|+.+|++++.+.|.. ..++.++|.++... |++++|+.+|++++.+.|.... ......++..+|.++
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~--- 168 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLK--- 168 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH---
Confidence 899999999999987753 56899999999996 9999999999999987652211 112355678888888
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVK-------ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDA 163 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 163 (172)
..+|++++|+.+|++++...|++.. ++.++|.++..+|++++|+..|++++.++|+....
T Consensus 169 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 169 -ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp -HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred -HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 5559999999999999999887643 68899999999999999999999999999987654
No 94
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.73 E-value=3.2e-16 Score=98.32 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.+..+..+|.+++..|++++|+..|++++..+| ....+++.+|.++ ...|++++|+..+.+++..+|.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~a~~~----~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP-------SNAIYYGNRSLAY----LRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCccc
Confidence 467889999999999999999999999999887 5567788888887 44599999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
+.+++.+|.++...|++++|+..|++++..+|++..++..+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999999998875443
No 95
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.72 E-value=1.6e-16 Score=95.70 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=97.1
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
|..+..++.+|.++...|++++|+..+++++..+| ....+++.+|.++.. .|++++|+..+++++...|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-------TNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999999999998877 456677888887744 4999999999999999988
Q ss_pred CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 125 DN-------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 125 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+ +.+++.+|.++...|++++|...|++++...| ++..+..+..+
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 77 88999999999999999999999999999998 56666666544
No 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=7.4e-17 Score=116.99 Aligned_cols=134 Identities=15% Similarity=0.052 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHH---hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDL---QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.|++|+.+|++++.++|+++.++..+|.++.. .+++++|+..++++++++| ....++..+|..+..++..
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-------~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-------DNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-------SCHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-------cchHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999988654 5778899999999999988 4444555555554444344
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.+++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+..
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999998876653
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=2.6e-16 Score=104.10 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhccCcccHH---HHHHHHHHHHH------------------hCChhHHHHHHHHhhCCCCCCccchhhh
Q 039398 30 AKQAEAEADKAISFDYKDAA---AHILKALALDL------------------QGFKTSALESFDLALSIPAVKTLTEKEK 88 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 88 (172)
+++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|++++...|.....+...
T Consensus 57 ~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 57 LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999998764 89999999987 5789999999999999999655422111
Q ss_pred ----------hHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 89 ----------GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV---KALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 89 ----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
....+.+|.++ ...|++++|+..|++++...|+++ .+++.+|.++..+|++++|++.++++..
T Consensus 137 ~~l~~~~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 137 KRLVFLKDRLAKYEYSVAEYY----TERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 11123445444 555999999999999999999986 6899999999999999999999999999
Q ss_pred cCCCcHH
Q 039398 156 IEPSWTD 162 (172)
Q Consensus 156 ~~p~~~~ 162 (172)
..|++.+
T Consensus 213 ~~~~~~~ 219 (225)
T 2yhc_A 213 NSSNTLE 219 (225)
T ss_dssp CCSCCCC
T ss_pred hCCCchh
Confidence 9887643
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.72 E-value=1.1e-16 Score=103.89 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhccCcccH----------------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA----------------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALF 93 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (172)
+++|+..|.+++...|.++ .++.++|.++...|++++|+.++++++.++| ....+++
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~ 126 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------NNVKALY 126 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------ccHHHHH
Confidence 9999999999999999887 8999999999999999999999999999887 6677888
Q ss_pred HhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHc
Q 039398 94 KRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAK-TAYESALK 155 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~ 155 (172)
.+|.++... |++++|+..|++++.++|++..++..++.++...++..++. ..|.+.+.
T Consensus 127 ~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 127 KLGVANMYF----GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHH----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHc----ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899888544 99999999999999999999999999999999999888887 44555443
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.72 E-value=2.2e-16 Score=94.98 Aligned_cols=103 Identities=17% Similarity=0.049 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...| ....+++.+|.++ ...|++
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~ 96 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------AYSKAYGRMGLAL----SSLNKH 96 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------cCHHHHHHHHHHH----HHhCCH
Confidence 99999999999999999999999999999999999999999999999887 4566788888887 455999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMR 143 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 143 (172)
++|+..+++++..+|+++.++..+|.++...|++
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998875
No 100
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.72 E-value=1e-16 Score=113.73 Aligned_cols=136 Identities=14% Similarity=0.028 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcc------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISF------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.+|++++.. .+..+.++..+|.++...|++++|+.++++++.+.+.........+.++..+|.++
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~---- 194 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF---- 194 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH----
Confidence 99999999999987 23356899999999999999999999999999876544333456677788888888
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHc-----cC-CCcHHHHHHHHh
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNV------KALCLLGECYEVKKMRDEAKTAYESALK-----IE-PSWTDAQAALDR 169 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~ 169 (172)
..+|++++|+.+|++++...+... .++.++|.++..+|++++|+.+|++++. .+ |....++..+..
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 444999999999999887754332 4788899999999999999999999888 45 666555555543
No 101
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.72 E-value=7.6e-17 Score=110.18 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++++|.++...|++++|+..+++++.++| ....+++.+|.++ ..+|++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~ 88 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKAHFFLGQCQ----LEMESY 88 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999998 6677888888888 444999
Q ss_pred HHHHHHHHHHHHhCCCCH-----HH--------------------------HHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 110 DSAIDDLTEAVKIQDDNV-----KA--------------------------LCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~-----~~--------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
++|+..|++++.++|+++ .+ ...++.. ..|++++|++.|++++..+|
T Consensus 89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p 166 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHE 166 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTS
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhcccc
Confidence 999999999999988652 11 1222222 36889999999999999999
Q ss_pred CcHHHHHHHHh
Q 039398 159 SWTDAQAALDR 169 (172)
Q Consensus 159 ~~~~~~~~l~~ 169 (172)
++......+..
T Consensus 167 ~~~~~~~~l~~ 177 (281)
T 2c2l_A 167 DDGHIRAQQAC 177 (281)
T ss_dssp CHHHHTHHHHH
T ss_pred chhhhhhHHHH
Confidence 98776655543
No 102
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.71 E-value=3.7e-17 Score=119.34 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.+++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++| ....+++.+|.++... |+
T Consensus 21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~~~~~lg~~~~~~----g~ 89 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------KYIKGYYRRAASNMAL----GK 89 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------TCHHHHHHHHHHHHHH----TC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHc----CC
Confidence 399999999999999999999999999999999999999999999999988 6677888889888544 99
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHccCCCc
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGEC--YEVKKMRDEAKTAYE-----------SALKIEPSW 160 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~al~~~p~~ 160 (172)
+++|+..|+++++.+|++..++..++.+ +...|++++|++.++ +++.++|++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999999998 889999999999999 888888765
No 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.8e-17 Score=117.61 Aligned_cols=134 Identities=18% Similarity=0.074 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH---h
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR---A 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 106 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|..... .....+++.+|.++ .. .
T Consensus 354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~----~~~~~~ 428 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLL----TRNPTV 428 (514)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC-SSCSHHHHHHHHHH----HTSCCT
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHH----hhhhhc
Confidence 8889999999999999999999999999999999999999999998776522211 01133677777777 44 5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
|++++|+..+++++..+|+++.++..+|.++...|++++|...|++++.++|+++.++..+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887664
No 104
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=2.3e-17 Score=102.36 Aligned_cols=112 Identities=21% Similarity=0.143 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcc-------cHH-----HHHHHHHHHHHhCChhHHHHHH
Q 039398 4 KRHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYK-------DAA-----AHILKALALDLQGFKTSALESF 71 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~ 71 (172)
..++..|..++...+ |++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.++
T Consensus 12 ~~~~~~G~~l~~~g~-----------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 12 YLALSDAQRQLVAGE-----------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344555666665555 99999999999999999 444 9999999999999999999999
Q ss_pred HHhhCC-------CCCCccchhhhhHHH----HHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 72 DLALSI-------PAVKTLTEKEKGDAL----FKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 72 ~~~l~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
+++|.+ +| +...+| +++|.++. .+|++++|+..|+++++++|++..+.-.+..+.
T Consensus 81 ~kAL~l~n~~~e~~p-------d~~~A~~~~~~~rG~aL~----~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 81 DKALHYFNRRGELNQ-------DEGKLWISAVYSRALALD----GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHCCTTS-------THHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHhhhccccCCC-------chHHHHHHHHHhHHHHHH----HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999998 88 777788 99999984 449999999999999999998876555554443
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=1.1e-16 Score=98.67 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++| ....+++.+|.++ ..+|++
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~ 102 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------NEPRFPFHAAECH----LQLGDL 102 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHH----HHcCCH
Confidence 99999999999999999999999999999999999999999999999988 5667788888888 444999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKK 141 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 141 (172)
++|+..|++++..+|+++........+...++
T Consensus 103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999988876665555544433
No 106
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=8.7e-16 Score=114.25 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+| ....++..++..+. ..|++
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~----~~g~~ 423 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-------QFGPAWIGFAHSFA----IEGEH 423 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHH----HHTCH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----HcCCH
Confidence 66777777777777777777777788888888888888888888777665 44555666666663 33788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++...|++..++..+|.++...|++++|.+.|++++..+|+++.++..+..
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888777777777777788888888888888888888887777777777665543
No 107
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.71 E-value=6.8e-17 Score=101.63 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcc------------------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHH
Q 039398 30 AKQAEAEADKAISF------------------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDA 91 (172)
Q Consensus 30 ~~~A~~~~~~~~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 91 (172)
+++|+..|.+++.. +|.++.++.++|.++..+|++++|+..+++++.++| ....+
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a 99 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE-------TNEKA 99 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-------TCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-------cchHH
Confidence 99999999999998 777889999999999999999999999999999988 67788
Q ss_pred HHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHH
Q 039398 92 LFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV-KALCLLGECYEVKKMRD 144 (172)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~ 144 (172)
++.+|.++. .+|++++|+..|++++.++|+++ .+...++.+....++..
T Consensus 100 ~~~~g~~~~----~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 100 LFRRAKARI----AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999884 44999999999999999999998 67778887776655443
No 108
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.71 E-value=8.5e-17 Score=95.91 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=84.4
Q ss_pred HhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039398 60 LQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV 139 (172)
Q Consensus 60 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 139 (172)
..|++++|+..|++++.+.+ ..+....+++.+|.++ ..+|++++|+..|+++++.+|+++.+++.+|.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~----~~p~~~~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL----QGKDLAECYLGLGSTF----RTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCC----CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC----CCccHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 46899999999999999842 1237788899999988 555999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 140 KKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 140 ~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
.|++++|+..|++++...|+++.+...
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999886543
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=1.1e-16 Score=99.34 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++| ....+++.+|.++. .+|++
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~~~~~lg~~~~----~~g~~ 105 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------XEPRFPFHAAECLL----QXGEL 105 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHHHHHHHHHHH----HTTCH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchHHHHHHHHHH----HcCCH
Confidence 99999999999999999999999999999999999999999999999988 66677888888884 44999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLG 134 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~ 134 (172)
++|+..|+++++.+|+++.......
T Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 106 AEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCcchHHHH
Confidence 9999999999999998876544333
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=95.45 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++ ..+|++
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~----~~~~~~ 100 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------TFIKGYTRKAAAL----EAMKDY 100 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CchHHHHHHHHHH----HHHhhH
Confidence 89999999999999999999999999999999999999999999999887 5667788888887 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
++|+..|++++..+|.+..++..++.++..+|+
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988764
No 111
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.70 E-value=4.7e-16 Score=110.14 Aligned_cols=120 Identities=18% Similarity=0.091 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc---------cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHH
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKT---------LTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLT 117 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (172)
.+..+..+|..++..|++++|+..|++++.+.+... ...+....+++++|.++ ..+|++++|+.+++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK----LKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHH----HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHH----HhccCHHHHHHHHH
Confidence 355789999999999999999999999998322100 01225677788888888 55599999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 118 EAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 118 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877654
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=2.2e-16 Score=107.93 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD 124 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 124 (172)
|.++..++.+|..++..|++++|+..|++++..+| ....+++.+|.++ ..+|++++|+..++++++++|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------LVAVYYTNRALCY----LKMQQPEQALADCRRALELDG 69 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHH----HHTTCHHHHHHHHHHHTTSCT
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHhCC
Confidence 56788999999999999999999999999999888 5677888888888 445999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
+++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999876
No 113
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=114.65 Aligned_cols=137 Identities=11% Similarity=-0.026 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcc---------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISF---------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 99 (172)
+++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++.+.+.... .....+.++...|..+
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 88999999998775 5677889999999999999999999999999976542221 2223455666666655
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV---KKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
..+ ..++|++|+.+|+++++++|+++.++..+|.++.. .++.++|++.|+++++++|+++.++..+.
T Consensus 147 ~~~--~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 147 LKC--GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHH--CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHH--ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 332 22579999999999999999999999999988654 46778999999999999999988776553
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-16 Score=114.40 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+ +.++..+|.++...|++++|+..+++++..+| ....++..+|.++ ...|++
T Consensus 253 ~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~----~~~~~~ 320 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-------NNSSVYYHRGQMN----FILQNY 320 (514)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-------TCTHHHHHHHHHH----HHTTCT
T ss_pred HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-------CCHHHHHHHHHHH----HHhCCH
Confidence 78888888888888888 88888888888888888888888888888877 3344555566555 333666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 77777777777666666666666676666667777777777776666666666555443
No 115
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=3.2e-16 Score=107.61 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..|.+++.+.+. .+.++.++|.++...|++++|+.+|++++.+.+... .....+.++..+|.++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~---- 127 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEIL---- 127 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH----
Confidence 78888888888887432 367899999999999999999999999998765211 1223356778888877
Q ss_pred HHh-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 104 RRA-GRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 104 ~~~-~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
... |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.+.|++..
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 664 99999999999999998754 467899999999999999999999999999987653
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.68 E-value=3.3e-16 Score=113.77 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhccCccc---------------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD---------------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFK 94 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (172)
|++|+..|++++..+|.+ ..+++++|.++..+|++++|+.++++++.++| ....+++.
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~ 356 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-------ANEKGLYR 356 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------ccHHHHHH
Confidence 999999999999999998 78999999999999999999999999999988 66788899
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 039398 95 RAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTA 149 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 149 (172)
+|.++. .+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 357 ~g~a~~----~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 357 RGEAQL----LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHH----HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999884 449999999999999999999999999999999999999887754
No 117
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.68 E-value=2.2e-16 Score=94.78 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccch
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTE 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 85 (172)
.+..|..++...+ +++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|
T Consensus 20 ~~~~g~~~~~~g~-----------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------ 82 (121)
T 1hxi_A 20 PMEEGLSMLKLAN-----------LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------ 82 (121)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 3445555555544 99999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
....+++.+|.++... |++++|+..|+++++.+|++..
T Consensus 83 -~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 -KDIAVHAALAVSHTNE----HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -TCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-------
T ss_pred -CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCCC
Confidence 6667888888888544 9999999999999999998654
No 118
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=112.09 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=90.7
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc----------hhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT----------EKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
+.....+..+|..++..|+|++|+..|++++.+.|..... ......+++++|.++ ..+|+|++|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~----~~~g~~~~A~~ 251 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL----IKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHH----HTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHH----HHcCCHHHHHH
Confidence 4467789999999999999999999999999887732100 000113677777777 56699999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+|++++..+|++..+++++|.++..+|++++|+..|++++.++|++..++..|..+
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887765
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=6.9e-15 Score=101.29 Aligned_cols=150 Identities=8% Similarity=-0.084 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--ChhHHHHHHHHhhCCCCCCc
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG--FKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~~~~~ 82 (172)
..|..+...+......... .++|+..+++++.++|++..+|..++.++..+| ++++++..+..++..+|
T Consensus 30 ~~y~~~~~~~~a~~~~~e~------s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--- 100 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEY------SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--- 100 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCC------SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc---
Confidence 3444555544444422222 568999999999999999999999999999999 99999999999999998
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHccC
Q 039398 83 LTEKEKGDALFKRAEVKMSMNRRA---GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD--EAKTAYESALKIE 157 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~ 157 (172)
....+|...+.+...+.... +++++++.++.+++..+|.+..+|..++.+....|.++ ++++.+.+++..+
T Consensus 101 ----k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 101 ----KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp ----TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred ----ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 44455555555553332333 78999999999999999999999999999999999998 9999999999999
Q ss_pred CCcHHHHHHH
Q 039398 158 PSWTDAQAAL 167 (172)
Q Consensus 158 p~~~~~~~~l 167 (172)
|.|..+|...
T Consensus 177 ~~N~sAW~~R 186 (306)
T 3dra_A 177 LKNNSAWSHR 186 (306)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999998654
No 120
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=1.9e-17 Score=115.96 Aligned_cols=122 Identities=23% Similarity=0.230 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhccCcccH-----------------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHH
Q 039398 30 AKQAEAEADKAISFDYKDA-----------------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDAL 92 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 92 (172)
+++|+..|++++...|++. .+++++|.++..+|++++|+.++++++.++| ....++
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~ 267 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-------KNPKAL 267 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHH
Confidence 8999999999999999887 4899999999999999999999999999988 667788
Q ss_pred HHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 93 FKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGEC-YEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+.+|.++ ..+|++++|+..|++++.++|++..++..++.+ ....+..+.+...|.+++...|+++.
T Consensus 268 ~~lg~a~----~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 268 FRRGKAK----AELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHH----HTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHH----HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999888 455999999999999999999999999999988 55567788999999999999998865
No 121
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=2.1e-15 Score=89.13 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ....+++.+|.++ ..+|++
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~----~~~~~~ 88 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGYSRKAAAL----EFLNRF 88 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHH----HHHhhH
Confidence 99999999999999999999999999999999999999999999999887 5566778888887 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
++|+..+++++..+|+++.++..++.+.
T Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999998775
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=3.6e-15 Score=100.95 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
|++|.+.|..++...|++. ..+.+|.+++..++|++|+..++.++...+ ......+++.+|.++ ..+|++
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~~~~~~a~~~LG~al----~~LG~~ 187 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----KFLAGAAGVAHGVAA----ANLALF 187 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----HHHHHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----cccHHHHHHHHHHHH----HHCCCH
Confidence 9999999999999999999 999999999999999999999998876532 112345788899888 555999
Q ss_pred HHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 110 DSAIDDLTEAVKIQ--DD-NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 110 ~~A~~~~~~~l~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++|+..|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+ ..++..|..
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999998654 55 5689999999999999999999999999999999 888888754
No 123
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=1.1e-15 Score=103.29 Aligned_cols=142 Identities=23% Similarity=0.182 Sum_probs=114.2
Q ss_pred hhhhhHHHHHHHHHHHHhccC-cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHHH
Q 039398 24 SSASSLAKQAEAEADKAISFD-YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 101 (172)
......+++|++.+.+....+ |..+.++..+|.++...|++++|+..+++++.+..... ...+....++..+|.++
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-- 95 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY-- 95 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH--
Confidence 445666888888888777655 77889999999999999999999999999996531000 01236677888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCcHHHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAVKI--------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKI--------EPSWTDAQA 165 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~ 165 (172)
..+|++++|+..|.+++.. +|....++..+|.++...|++++|...|++++.+ .|....++.
T Consensus 96 --~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 96 --GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp --HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred --HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5559999999999999988 4667789999999999999999999999999998 565566665
Q ss_pred HHHh
Q 039398 166 ALDR 169 (172)
Q Consensus 166 ~l~~ 169 (172)
.+..
T Consensus 174 ~la~ 177 (283)
T 3edt_B 174 NLAS 177 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 124
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=8.3e-16 Score=108.93 Aligned_cols=135 Identities=18% Similarity=0.040 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccCc------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDY------KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.+|++++...+ ..+.+++.+|.++...|++++|+.++++++.+.+.........+.++..+|.++.
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~--- 193 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD--- 193 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH---
Confidence 9999999999988742 3567899999999999999999999999997655333223456677778887774
Q ss_pred HHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----cCCCcHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDD------NVKALCLLGECYEVKKMRDEAKTAYESALK-----IEPSWTDAQAALD 168 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~ 168 (172)
.+|++++|+.+|++++...+. ...++.++|.++..+|++++|+.+|++++. .+|....++..+.
T Consensus 194 -~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 194 -DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred -HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 447788888777777765321 234677777777777777777777777777 5665555554443
No 125
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.66 E-value=1.7e-15 Score=107.24 Aligned_cols=109 Identities=18% Similarity=0.107 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhc----------------cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHH
Q 039398 30 AKQAEAEADKAIS----------------FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALF 93 (172)
Q Consensus 30 ~~~A~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (172)
+++|+..|++++. .+|.++.++.++|.++..+|++++|+.++++++.++| ....+++
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~ 311 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-------SNTKALY 311 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-------hhHHHHH
Confidence 8999999999998 7888899999999999999999999999999999998 6778889
Q ss_pred HhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 039398 94 KRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTA 149 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 149 (172)
.+|.++ ..+|++++|+..|+++++++|++..++..++.++...++++++.+.
T Consensus 312 ~lg~~~----~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 312 RRAQGW----QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 4449999999999999999999999999999999999998887654
No 126
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=1.4e-15 Score=102.77 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcc--------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-chhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF--------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTL-TEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 100 (172)
+++|+..+++++.. .|..+.++..+|.++...|++++|+..+++++.+...... ..+....++..+|.++
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~- 137 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC- 137 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Confidence 88999999998876 4677889999999999999999999999999976210000 1236677888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKI--------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+|++++|+..+++++.. .|....++..+|.++...|++++|...|++++.+
T Consensus 138 ---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 138 ---QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp ---HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5559999999999999998 6777889999999999999999999999999986
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=9.5e-15 Score=108.58 Aligned_cols=129 Identities=8% Similarity=-0.064 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC----------hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGF----------KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
.++|+..+++++..+|++..+|..++.++...|+ +++++..+++++..+| ....+|+..+.+.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-------K~y~aW~hR~w~l 117 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------KSYGTWHHRCWLL 117 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH
Confidence 5789999999999999999999999999999998 9999999999999998 5666677676666
Q ss_pred HHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 100 MSMNRRAG--RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK-MRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 100 ~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
..++ +++++++.+.++++.+|.+..+|..++.+....| .++++++++.++++.+|++..+|.....
T Consensus 118 ----~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 118 ----SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp ----HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred ----HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 4448 6799999999999999999999999999999999 9999999999999999999999976543
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.65 E-value=1.3e-15 Score=92.81 Aligned_cols=102 Identities=19% Similarity=0.067 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|.+++..+|+++.+++.+|.++...|++++|+..+++++.++| ....+++.+|.++ ..+|++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~----~~~~~~ 93 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKAHFFLGQCQ----LEMESY 93 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHH----HHHhhH
Confidence 99999999999999999999999999999999999999999999999888 5677888888888 444999
Q ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQDD-----NVKALCLLGECYEVKKM 142 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~ 142 (172)
++|+..|++++..+|+ +..+...+..+......
T Consensus 94 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 94 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 67777777777665543
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=1.3e-14 Score=87.51 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK 128 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 128 (172)
.+++.+|.++...|++++|+..+++++...| .....++.+|.++.. .|++++|+..+++++...|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-------cchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchH
Confidence 4688999999999999999999999998776 445667777777744 49999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
++..+|.++...|++++|...+++++...|.+..++..+..
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999888776654
No 130
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=7.9e-15 Score=101.00 Aligned_cols=130 Identities=11% Similarity=-0.063 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHH----HHh---CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALAL----DLQ---GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (172)
.+++++.+++.++..+|.+..+|..++.++ ... +++++++..+.+++..+| ....+|...+.+.
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-------kny~aW~~R~~vl-- 154 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-------KNHHVWSYRKWLV-- 154 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH--
Confidence 399999999999999999999999999999 777 899999999999999998 6666777777666
Q ss_pred HHHHhCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC------HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 102 MNRRAGRVD--SAIDDLTEAVKIQDDNVKALCLLGECYEVKKM------RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 102 ~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
..++.++ ++++++.++++.+|.+..+|..++.+....+. ++++++++.+++..+|+|..+|..+.-
T Consensus 155 --~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ 228 (306)
T 3dra_A 155 --DTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG 228 (306)
T ss_dssp --HHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred --HHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 3348888 99999999999999999999999999999988 999999999999999999999976543
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.65 E-value=7.8e-15 Score=87.42 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...| .....++.+|.++ ...|++
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~----~~~~~~ 93 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAY----YKQGDY 93 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHH----HHhcCH
Confidence 99999999999999999999999999999999999999999999998877 4456677788777 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKK 141 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 141 (172)
++|+..+++++..+|+++.++..+|.++...|
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999987654
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.2e-15 Score=111.96 Aligned_cols=133 Identities=11% Similarity=-0.059 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG--FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
....+++++..+++++..+|++..+|+.++.++...+ ++++++..+.++++.+| ....+|...+.+.
T Consensus 85 ~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------~N~~aW~~R~~~l---- 153 (567)
T 1dce_A 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RNFHCWDYRRFVA---- 153 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------ccccHHHHHHHHH----
Confidence 3445999999999999999999999999999999999 67999999999999998 5666777777666
Q ss_pred HHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 104 RRAG-RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK--------------KMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 104 ~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
...| .++++++++.++++.+|.+..+|+.+|.++... +.++++++++.+++.++|++..+|..+.
T Consensus 154 ~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~ 233 (567)
T 1dce_A 154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (567)
T ss_dssp HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 3347 899999999999999999999999999999885 6689999999999999999999998765
Q ss_pred h
Q 039398 169 R 169 (172)
Q Consensus 169 ~ 169 (172)
-
T Consensus 234 ~ 234 (567)
T 1dce_A 234 W 234 (567)
T ss_dssp H
T ss_pred H
Confidence 4
No 133
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.65 E-value=4.7e-16 Score=92.68 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcc---CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISF---DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
+++|+..|+++++. +|+++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++...
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~---- 74 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------NHQALRVFYAMVLYNL---- 74 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHc----
Confidence 88999999999999 699999999999999999999999999999999988 5677888888888544
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
|++++|+..+++++...|+++........+.
T Consensus 75 g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999999999999988765444333
No 134
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=3.6e-14 Score=96.13 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ...+++.+|.++......
T Consensus 22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHhCCCCc
Confidence 7778888887776 6677778888888887 788888888888877652 344556666665320000
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccC
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIE 157 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~ 157 (172)
.+++++|+..|++++..+ ++.+++.+|.++.. .+++++|+.+|++++..+
T Consensus 91 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 377777777777776653 56777777777777 777777777777777654
No 135
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=3.3e-15 Score=105.94 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhccCc-------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDY-------KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+++|+.++.+++...+ ....++..+|.++...|++++|+.++++++.+.+.. ......+.++..+|.++
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y--- 234 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCK--- 234 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHH---
Confidence 8889999999888743 345689999999999999999999999999765422 12345566788899888
Q ss_pred HHHhCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 103 NRRAGRVDSAIDDLTEAVK-----IQ-DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~-----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
..+|++++|+.++++++. .+ |..+.++.++|.++..+|++++|...+++++.+.+
T Consensus 235 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 235 -NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455999999999999999 46 77789999999999999999999999999998853
No 136
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.63 E-value=1e-14 Score=87.91 Aligned_cols=117 Identities=10% Similarity=-0.014 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccH---HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc
Q 039398 6 HFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDA---AAHILKALALDLQGFKTSALESFDLALSIPAVKT 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~ 82 (172)
.+..|..++...+ +++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|..
T Consensus 5 ~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~- 72 (129)
T 2xev_A 5 AYNVAFDALKNGK-----------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH- 72 (129)
T ss_dssp HHHHHHHHHHTTC-----------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-
T ss_pred HHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-
Confidence 3445555555544 9999999999999999988 899999999999999999999999999988722
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 039398 83 LTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK 141 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 141 (172)
.....+++.+|.++ ..+|++++|+..|++++..+|+++.+...+..+....+
T Consensus 73 ---~~~~~~~~~la~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 73 ---DKAAGGLLKLGLSQ----YGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp ---TTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ---cccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 12366788888888 45599999999999999999999887776666554444
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.63 E-value=5.3e-15 Score=88.94 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|...........+++.+|.++ ...|++
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~ 95 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY----FKEEKY 95 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH----HHhccH
Confidence 9999999999999999999999999999999999999999999999887643333334477888888888 445999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
++|+..|++++...| ++..+..++.+....++
T Consensus 96 ~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 96 KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999998 68888888888766543
No 138
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=2.3e-14 Score=99.36 Aligned_cols=130 Identities=11% Similarity=-0.064 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGF--KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
...+++++.+++.++..+|.+..+|..++.++...++ +++++.++.+++..+| ....+|...+.+..
T Consensus 87 ~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-------rNy~AW~~R~~vl~---- 155 (331)
T 3dss_A 87 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RNFHCWDYRRFVAA---- 155 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----
Confidence 3448899999999999999999999999999999994 8999999999999998 56666666666663
Q ss_pred HhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 105 RAGR-VDSAIDDLTEAVKIQDDNVKALCLLGECYEVK--------------KMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 105 ~~~~-~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
..|. ++++++++.+++..+|.+..+|+.++.++... +.++++++++.+++..+|+|..+|..+
T Consensus 156 ~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 156 QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3377 69999999999999999999999999999887 568999999999999999999999754
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=4.7e-15 Score=101.65 Aligned_cols=136 Identities=20% Similarity=0.128 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcc--------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF--------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 100 (172)
+++|+..+++++.. .|..+.++..+|.++...|++++|+..+++++.+..... ........++..+|.++
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~- 121 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY- 121 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-
Confidence 88999999999884 677888999999999999999999999999997521000 01235677788888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCcHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKIQ--------DDNVKALCLLGECYEVKKMRDEAKTAYESALKI--------EPSWTDAQ 164 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~ 164 (172)
...|++++|+.++++++... |....++..+|.++...|++++|+..|++++.. .|....++
T Consensus 122 ---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 122 ---GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp ---HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred ---HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55599999999999999874 556678999999999999999999999999988 55555556
Q ss_pred HHHHh
Q 039398 165 AALDR 169 (172)
Q Consensus 165 ~~l~~ 169 (172)
..+..
T Consensus 199 ~~la~ 203 (311)
T 3nf1_A 199 NNLAS 203 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 140
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=1e-14 Score=92.83 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHH-HhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALD-LQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
+++|+..+++++..+| ++..+...+.+.. ..+...+|+..+++++..+| ....+++.+|.++ ...|+
T Consensus 56 ~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-------~~~~~~~~la~~~----~~~g~ 123 (176)
T 2r5s_A 56 FELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANP-------DNFELACELAVQY----NQVGR 123 (176)
T ss_dssp HHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-------TCHHHHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHccc
Confidence 9999999999999999 8877766665533 33455678999999999888 6777888888888 44499
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 109 VDSAIDDLTEAVKIQDDN--VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
+++|+..|+++++.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999875 66999999999999999999999999874
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=89.33 Aligned_cols=99 Identities=21% Similarity=0.136 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
+++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+| ....+++.+|.++...
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~---- 112 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------GDVKALYRRSQALEKL---- 112 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------CCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------cCHHHHHHHHHHHHHc----
Confidence 999999999999999998 89999999999999999999999999999887 4567788888888444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV 139 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 139 (172)
|++++|+..|++++..+|++..++..++.+...
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999888877543
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.62 E-value=3.1e-16 Score=114.49 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
..+.++..+|.++...|++++|+..|+++++++| ....+++.+|.++ ..+|++++|+..++++++++|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-------~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-------SNAIYYGNRSLAY----LRTECYGYALGDATRAIELDKK 72 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHhCCC
Confidence 3455677788899999999999999999999988 5677888888888 4559999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 126 NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++.+++++|.++..+|++++|++.|+++++++|++..++..+..+
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998887766543
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=3.4e-14 Score=92.75 Aligned_cols=100 Identities=14% Similarity=0.012 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 127 (172)
...++.+|.++...|++++|+..|++++.. ...+++.+|.++ ..+|++++|+..|++++..+|+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDP----------HSRICFNIGCMY----TILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC----------CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----------ChHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCccch
Confidence 345788999999999999999999999632 345788888888 445999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
.+++.+|.++...|++++|+..|++++...|++.
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999888766
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.61 E-value=3.7e-15 Score=102.25 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.+|++++...+.. ..++..+|.+|...|++++|+.+|++++...............+++++|.++
T Consensus 131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y---- 206 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL---- 206 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH----
Confidence 899999999999864432 3479999999999999999999999999532211113456677889999988
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC-HHHHHHHHHHHHccC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKM-RDEAKTAYESALKIE 157 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~ 157 (172)
..+|+|++|+.++++++.+.+.. +.+++++|.++..+|+ +++|..+|++++.+.
T Consensus 207 ~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 55599999999999999886543 7899999999999995 799999999999653
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=2.1e-14 Score=94.14 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+.+|+++. ++.++.+++.+|.++.. .+++++|+.+|++++...|. ...+.+++.+|.++..-..-
T Consensus 69 ~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-----~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 69 YPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-----DAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-----HHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-----cchHHHHHHHHHHHHcCCCC
Confidence 445555555543 23445555555555544 44555555555555544320 01244455555554220000
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVK-K-----MRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+++++|+.+|+++... |.++.+++++|.+|... | ++++|+.+|+++.+. .++.+...|.+|
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l 209 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRI 209 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHh
Confidence 24555555555555555 44445555555555443 2 455555555555543 233444444443
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.61 E-value=6e-14 Score=97.80 Aligned_cols=129 Identities=12% Similarity=-0.045 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-C-ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQ-G-FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++++..++.++..+|++..+|..++.++... + ++++++..+.+++..+| ....+|...+.+.. ..+
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-------kNy~AW~~R~wvl~----~l~ 173 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-------KNYHTWAYLHWLYS----HFS 173 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-------TCHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHH----Hhc
Confidence 55555666666666666666666666655555 5 55566666666665555 33334444443332 225
Q ss_pred CHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 108 RVD--------SAIDDLTEAVKIQDDNVKALCLLGECYEVKKM-------RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 108 ~~~--------~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.++ ++++++.++++.+|.+..+|+.++.++...+. ++++++++.+++..+|+|..+|..+..
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555 99999999999999999999999999999987 799999999999999999999976543
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.61 E-value=5.6e-14 Score=97.97 Aligned_cols=148 Identities=9% Similarity=-0.025 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-ChhHHHHHHHHhhCCCCCCcc
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG-FKTSALESFDLALSIPAVKTL 83 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~~~~~~ 83 (172)
+.|..+...+......... .++|+..+++++..+|++..+|..++.++...| .+++++..+..++..+|
T Consensus 51 ~~y~~~~~~~r~~~~~~e~------se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---- 120 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEK------SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---- 120 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC------SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----
Confidence 3455555555444433333 568999999999999999999999999999999 59999999999999998
Q ss_pred chhhhhHHHHHhhhHHHHHHHHh-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHH
Q 039398 84 TEKEKGDALFKRAEVKMSMNRRA-G-RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD--------EAKTAYESA 153 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a 153 (172)
....+|...+.+. ..+ + ++++++.++.+++..+|.+..+|..++.+....|.++ ++++++.++
T Consensus 121 ---Kny~aW~hR~wlL----~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 121 ---KSYQVWHHRLLLL----DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ---CCHHHHHHHHHHH----HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHH----HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 5555566555555 333 5 7899999999999999999999999999999999888 999999999
Q ss_pred HccCCCcHHHHHHHHh
Q 039398 154 LKIEPSWTDAQAALDR 169 (172)
Q Consensus 154 l~~~p~~~~~~~~l~~ 169 (172)
+..+|.|..+|....-
T Consensus 194 I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 194 LRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHH
Confidence 9999999999976543
No 148
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=101.77 Aligned_cols=126 Identities=20% Similarity=0.112 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhccC--------cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISFD--------YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 100 (172)
+++|+.++++++... |....++..+|.++...|++++|+.++++++....... ...+....++..+|.++.
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 888999999888764 66778899999999999999999999999997611000 012356677888888884
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKI-------------------------------------------------QDDNVKALC 131 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~-------------------------------------------------~~~~~~~~~ 131 (172)
.. |++++|+..+++++.. .|..+.++.
T Consensus 207 ~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (311)
T 3nf1_A 207 KQ----GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK 282 (311)
T ss_dssp HH----TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred Hc----CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 44 9999999999999974 355678899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 132 LLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 132 ~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.+|.++...|++++|...|++++++.|.
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988775
No 149
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.60 E-value=1.9e-14 Score=101.90 Aligned_cols=124 Identities=16% Similarity=0.047 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhccCc-------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDY-------KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+++|+.++.+++...+ ..+.++..+|.++...|++++|+.++++++.+.+... .....+.++..+|.++...
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-NDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHC
Confidence 7888888888887644 2356888999999999999999999999997543111 2235667788899888444
Q ss_pred HHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 103 NRRAGRVDSAIDDLTEAVK-----IQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
|++++|+.++++++. .+|..+.++..+|.++..+|++++|..++++++.+.+
T Consensus 236 ----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 236 ----GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ----CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 7788889999999999999999999999999998854
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=1.4e-14 Score=99.30 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.++.+++...+.. ..++..+|.++...|++++|+.+|++++.+.............+++++|.++
T Consensus 131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y---- 206 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL---- 206 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH----
Confidence 899999999999765443 5689999999999999999999999999432111111112236788888888
Q ss_pred HHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHH-HHHHHHHHccC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDD------NVKALCLLGECYEVKKMRDEA-KTAYESALKIE 157 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~ 157 (172)
..+|+|++|+.++++++...+. ...+++++|.++..+|++++| ..+|++++.+.
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5559999999999999987543 267899999999999999999 88899998654
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.59 E-value=2.8e-13 Score=94.00 Aligned_cols=129 Identities=8% Similarity=-0.061 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC----------hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGF----------KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
.++|+..+.+++..+|++..+|..++.++...+. +++++..+..++..+| ....+|...+.+.
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------Kny~aW~hR~wlL 118 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------KSYGTWHHRCWLL 118 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH
Confidence 5689999999999999999999999999988876 7899999999999988 5555666666555
Q ss_pred HHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 100 MSMNRRAG--RVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM-RDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 100 ~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
. .++ .+++++.++.+++..+|.+..+|...+.+....|. ++++++++.+++..+|.|..+|.....
T Consensus 119 ~----~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 119 S----RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp H----HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred h----ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3 336 58999999999999999999999999999999998 699999999999999999999976543
No 152
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.58 E-value=1.5e-14 Score=99.08 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|+..+++++..+|+........+..+...++.++|+..+++++..+| +...+++.+|.++. ..|++
T Consensus 167 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-------~~~~~~~~la~~l~----~~g~~ 235 (287)
T 3qou_A 167 SEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-------EDAALATQLALQLH----QVGRN 235 (287)
T ss_dssp HHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-------TCHHHHHHHHHHHH----HTTCH
T ss_pred HHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-------ccHHHHHHHHHHHH----HcccH
Confidence 89999999999999998887888888889999999999999999999988 77888899998884 44999
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 110 DSAIDDLTEAVKIQDDN--VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
++|+..|.++++.+|++ ..++..+|.++...|+.++|...|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999998 88999999999999999999999999874
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=3.4e-13 Score=92.45 Aligned_cols=124 Identities=10% Similarity=-0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhccCcccH------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|++.+.+++...|... ..++.+|.++...|++++|+..+++++...+.... ......+++.+|.++
T Consensus 91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y---- 165 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-VYQNLYIENAIANIY---- 165 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-TTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----
Confidence 8999999999998877644 34667889999999999999999999987653222 223466788889888
Q ss_pred HHhCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 104 RRAGRVDSAIDDLTEAV---KIQDDNV----KALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l---~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
..+|++++|+.+|++++ ...|++. .+++++|.++..+|++++|+.++++++.+.+
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55599999999999999 4556543 6899999999999999999999999998754
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=4.5e-13 Score=90.71 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+.+|++++.. +++.+++.+|.++.. .+++++|+.+|+++++.++ ..+++.+|.++......
T Consensus 94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---------GDGCTILGSLYDAGRGT 162 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHcCCCC
Confidence 67777777777665 366777777777777 7777777777777776532 23344445444220000
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCC
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p 158 (172)
.+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++..|
T Consensus 163 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 35666666666666554 235555666666666 5666666666666655544
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=2.2e-14 Score=89.18 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.++.+++...+.. ..++..+|.++...|++++|+..+++++.+.+... .......+++.+|.++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~---- 99 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTY---- 99 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHH----
Confidence 889999999998876543 25889999999999999999999999997654211 2233466777888887
Q ss_pred HHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDD------NVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
..+|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.+...
T Consensus 100 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 100 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4459999999999999987432 2467899999999999999999999999876543
No 156
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=1.6e-13 Score=101.24 Aligned_cols=138 Identities=12% Similarity=-0.019 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhc-cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHHH-------
Q 039398 31 KQAEAEADKAIS-FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKMS------- 101 (172)
Q Consensus 31 ~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------- 101 (172)
++|+..|++++. ..|+++.+|..+|..+...|++++|...|++++.+.|... ..+...+......|....+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 489999999997 7999999999999999999999999999999999887543 2333333333222221110
Q ss_pred -----------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH--
Q 039398 102 -----------------MNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD-- 162 (172)
Q Consensus 102 -----------------~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 162 (172)
.+...|++++|...|+++++.+|+++.+|..++.++...|++++|...|++++...|.++.
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 1223578888888888888888888888888888888888888888888888877665543
Q ss_pred --HHHHHH
Q 039398 163 --AQAALD 168 (172)
Q Consensus 163 --~~~~l~ 168 (172)
+|....
T Consensus 463 ~~lw~~~~ 470 (530)
T 2ooe_A 463 GEIWARFL 470 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 565443
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.7e-14 Score=101.79 Aligned_cols=123 Identities=19% Similarity=0.112 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhccCcccH----HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA----AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+..|++++..+|+++ .++..+|.++...|++++|+..+++++.+.... ........++..+|.++ ..
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~----~~ 138 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-NDRLGEAKSSGNLGNTL----KV 138 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHHHH----HH
Confidence 9999999999999999987 589999999999999999999999999752110 12346677888888888 45
Q ss_pred hCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHccC
Q 039398 106 AGRVDSAIDDLTEAVKI------QDDNVKALCLLGECYEVKKM-----------------RDEAKTAYESALKIE 157 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~------~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~al~~~ 157 (172)
+|++++|+.++.+++.. .|....++..+|.++...|+ +++|+..+++++.+.
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 59999999999999988 55667799999999999999 999999999998764
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=1.9e-14 Score=99.46 Aligned_cols=125 Identities=12% Similarity=0.025 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.+|++++.+.+. ...++.++|.++.. |++++|+.+|++++.+.+... .......++..+|.++
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~---- 165 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE-RLRQAAELIGKASRLL---- 165 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHH----
Confidence 77888888888777432 25688899999998 999999999999998755211 1223456778888888
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+..|++++ ++|+..
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 55599999999999999986654 3478889999999999999999999999 999754
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.55 E-value=5.3e-14 Score=90.96 Aligned_cols=125 Identities=16% Similarity=0.084 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhc------cCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAIS------FDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.++++++. ..|....++..+|.++...|++++|+..+++++.+...........+.++..+|.++...
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~- 120 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF- 120 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-
Confidence 8899999999888 556677899999999999999999999999999763211112235566778888888444
Q ss_pred HHhCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQD--DN----VKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
|++++|+..+++++...+ .+ ..++..+|.++...|++++|...+++++.+..
T Consensus 121 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 121 ---GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999997632 22 23568999999999999999999999997743
No 160
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=4.1e-13 Score=99.10 Aligned_cols=123 Identities=10% Similarity=0.016 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHH-------hCChh-------HHHHHHHHhhC-CCCCCccchhhhhHHHHHh
Q 039398 31 KQAEAEADKAISFDYKDAAAHILKALALDL-------QGFKT-------SALESFDLALS-IPAVKTLTEKEKGDALFKR 95 (172)
Q Consensus 31 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 95 (172)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++++. ..| ....+|+.+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-------~~~~l~~~~ 327 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------KNMLLYFAY 327 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-------ccHHHHHHH
Confidence 477889999999999999999999999986 79987 99999999997 777 556677777
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 96 AEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNV-KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
+.++ ...|++++|...|++++..+|.++ .+|..+|.++...|++++|...|+++++..|.+...+
T Consensus 328 ~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 328 ADYE----ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp HHHH----HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred HHHH----HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 7777 444899999999999999988885 5888888887777777777777777777776654443
No 161
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.54 E-value=1.6e-13 Score=81.17 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHH
Q 039398 32 QAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDS 111 (172)
Q Consensus 32 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (172)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ....+++.+|.++... |++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~----g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------TYSVAWKWLGKTLQGQ----GDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH----TCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHc----CCHHH
Confidence 467788888888888888888888888888888888888888888777 4556677777777443 88888
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Q 039398 112 AIDDLTEAVKIQDD--NVKALCLLGECYEVKK 141 (172)
Q Consensus 112 A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~ 141 (172)
|+..|++++...|. +......+...+...+
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 88888888887764 3444444544444433
No 162
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.5e-15 Score=87.10 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
++.+++.+|.+++..|++++|+..|++++.++| ....+++.+|.++ ..+|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------QNPVGYSNKAMAL----IKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHhCCCc
Confidence 467889999999999999999999999999887 5567788888887 44499999999999999999998
Q ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 127 ------VKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 127 ------~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
..+++.+|.++...|+++.|+..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88899999999999988887766554
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.54 E-value=1.7e-14 Score=99.62 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYK------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..|.+++.+.+. ...++..+|.++...|++++|+.+|++++.+.+... .....+.++..+|.++
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~---- 126 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLM---- 126 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH----
Confidence 77888888888877553 256889999999999999999999999997643111 1223456777888777
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.+.|.+
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 66 99999999999999987653 5789999999999999999999999999987644
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.7e-14 Score=99.98 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhccCcccH------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..+++++...|... .++..+|.++...|++++|+.++++++.+.+... .......++..+|.++
T Consensus 203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~---- 277 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTY---- 277 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHH----
Confidence 8899999999988766543 3899999999999999999999999997654221 2233466778888887
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
..+|++++|+.++++++...+.. ..++..+|.++...|++++|..+|++++.+.+
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45599999999999999885544 66899999999999999999999999998743
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=2e-13 Score=93.64 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhccCcccHH------HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAA------AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..+++++...+.++. .+..+|.++...+++++|+.++++++.+.+... .+.....++..+|.++
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y---- 165 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIY---- 165 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-CTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH----
Confidence 89999999999998776655 233588888888999999999999998654322 2234455788888888
Q ss_pred HHhCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 104 RRAGRVDSAIDDLTEAVKI-------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
..+|++++|+.+|++++.. .+....+++++|.++..+|++++|+.++++++.+.+.
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4559999999999999953 1223468999999999999999999999999987643
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=8.1e-14 Score=98.79 Aligned_cols=122 Identities=20% Similarity=0.130 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhccCcccH----HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA----AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+..|++++...|+++ .++..+|.++...|++++|+.++++++.+.+.. ........++..+|.++ ..
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~----~~ 99 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEAKASGNLGNTL----KV 99 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH----HH
Confidence 9999999999999999884 578999999999999999999999998653211 12345677788888888 45
Q ss_pred hCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHcc
Q 039398 106 AGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKM--------------------RDEAKTAYESALKI 156 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al~~ 156 (172)
+|++++|+..+.+++...|.. ..++..+|.++...|+ +++|+..|.+++.+
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999986643 4589999999999999 99999999999876
No 167
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=9.2e-14 Score=95.80 Aligned_cols=122 Identities=20% Similarity=0.133 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhccCcccH----HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA----AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+..|++++..+|+++ .++..+|.++...|++++|+..+++++.+.+.. ........++..+|.++ ..
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~----~~ 95 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEAKASGNLGNTL----KV 95 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHH----HH
Confidence 9999999999999999984 678899999999999999999999998653211 12235567778888887 45
Q ss_pred hCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHcc
Q 039398 106 AGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKM--------------------RDEAKTAYESALKI 156 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al~~ 156 (172)
.|++++|+..+.+++...|.. ..++..+|.++...|+ +++|...+++++.+
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999886543 3489999999999999 99999999998876
No 168
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.51 E-value=2.4e-13 Score=80.44 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 039398 65 TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRD 144 (172)
Q Consensus 65 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 144 (172)
++|+..|++++..+| ....+++.+|.++ ...|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus 2 ~~a~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQGT-------DNMLLRFTLGKTY----AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTTTC-------CCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 468899999999988 5667888888888 44499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCc
Q 039398 145 EAKTAYESALKIEPSW 160 (172)
Q Consensus 145 ~A~~~~~~al~~~p~~ 160 (172)
+|+..|++++.+.|..
T Consensus 71 ~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 71 GARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999998853
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.50 E-value=2.3e-13 Score=89.20 Aligned_cols=130 Identities=21% Similarity=0.072 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC----ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 28 SLAKQAEAEADKAISFDYKDAAAHILKALALDLQG----FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
..+++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++++. ....+++.+|.++..-.
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---------g~~~a~~~Lg~~y~~g~ 99 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---------GSKSGEIVLARVLVNRQ 99 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTCGG
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCC
Confidence 3489999999999764 688999999999988 7 899999999999764 45667888888884311
Q ss_pred HHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 104 RRAGRVDSAIDDLTEAVKIQD--DNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.-.+++++|+.+|+++....| .++.+++++|.+|.. .+++++|+.+|++++.. |.++.+...|..+
T Consensus 100 g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 100 AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM 171 (212)
T ss_dssp GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 114899999999999999887 358999999999999 88999999999999998 7788887777653
No 170
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.50 E-value=3.7e-13 Score=75.97 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
++.+++.+|.++...|++++|+..+++++..+| ....+++.+|.++ ...|++++|+..+++++..+|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAY----YKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHH----HHHhhHHHHHHHHHHHHhcCCCC
Confidence 445566666666666666666666666665554 3344455555555 23366666666666666666666
Q ss_pred HHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVK 140 (172)
Q Consensus 127 ~~~~~~l~~~~~~~ 140 (172)
+.++..+|.++...
T Consensus 77 ~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 AEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555543
No 171
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=6.2e-14 Score=99.87 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcc------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISF------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+.++++++.. .|....++..+|.++...|++++|+.++++++.+.+.. ........++..+|.++...
T Consensus 102 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~- 179 (411)
T 4a1s_A 102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAK- 179 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHc-
Confidence 88999999998887 57788899999999999999999999999999763211 01235566777777777444
Q ss_pred HHhCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 104 RRAGR-----------------VDSAIDDLTEAVKIQ------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 104 ~~~~~-----------------~~~A~~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
|+ +++|+.++++++.+. +....++..+|.++...|++++|+..|++++.+.|.
T Consensus 180 ---g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 180 ---GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp ---HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88 888888888887763 233457888888888888888888888888877664
No 172
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=1.2e-13 Score=87.85 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=86.9
Q ss_pred HHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 039398 58 LDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGEC- 136 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~- 136 (172)
+...|++++|+..+++++..+| ....+++.+|.++ ...|++++|+..|++++..+|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-------QNSEQWALLGEYY----LWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-------SCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567899999999999999887 5667788888888 444999999999999999999999999999999
Q ss_pred HHHccCH--HHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 137 YEVKKMR--DEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 137 ~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+...|++ ++|+..|++++..+|+++.++..+..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASD 124 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8899999 999999999999999999988777543
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=1.6e-13 Score=80.14 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh-CC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA-GR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (172)
+++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++...|. .....+++.+|.++ ..+ |+
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~l~~~~----~~~~~~ 92 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYNKDVWAAKADAL----RYIEGK 92 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTCHHHHHHHHHHH----TTCSSC
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHHH----HHHhCC
Confidence 999999999999999999999999999999999999999999999999882 11566778888777 889 99
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 039398 109 VDSAIDDLTEAVKIQDDNV 127 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~ 127 (172)
+++|+.++++++...|.++
T Consensus 93 ~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 93 EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhhcccCCC
Confidence 9999999999999998753
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.2e-13 Score=93.92 Aligned_cols=126 Identities=16% Similarity=0.083 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..+++++...|.. ..++..+|.++...|++++|+..+++++.+.+... .......++..+|.++
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~---- 273 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTY---- 273 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHH----
Confidence 888999999888775543 33889999999999999999999999997654211 2233466677788777
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDN------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
..+|++++|+..+++++...+.. ..++..+|.++...|++++|..+|++++.+.+..
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 45599999999999999875532 4588899999999999999999999999887653
No 175
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.45 E-value=2.9e-12 Score=72.24 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=72.4
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
.....++.+|..+ ...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..
T Consensus 7 ~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAY----YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHH----HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4566778888887 444999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhh
Q 039398 167 LDRL 170 (172)
Q Consensus 167 l~~l 170 (172)
+..+
T Consensus 83 l~~~ 86 (91)
T 1na3_A 83 LGNA 86 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 176
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1e-11 Score=76.00 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.+++|+.+|+++.+..+... . +|.+|...+..++|+.+|+++.+. ..+.+++.+|.++..-.--.++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL---------NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCC
T ss_pred CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHcCCCCCcc
Confidence 38999999999998874444 4 999999999999999999999985 4566788888888430001489
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 109 VDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+...|.+
T Consensus 77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 77 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 99999999999887 679999999999999 89999999999999977 45555555543
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=3.7e-12 Score=82.22 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|...++......+..+.++..+|.++...|++++|+..+++++.+..... .......++..+|.++ ..+|++
T Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~----~~~g~~ 82 (203)
T 3gw4_A 8 YALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVE----RMAGNW 82 (203)
T ss_dssp HHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH----HHTTCH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH----HHcCCH
Confidence 78888855444443336788999999999999999999999999997432111 2335677788888888 455999
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKI---QDDN----VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 110 ~~A~~~~~~~l~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
++|+..+.+++.. .+++ ..++.++|.++...|++++|...+++++.+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999988 4433 4678999999999999999999999999764
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.4e-12 Score=74.12 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=67.5
Q ss_pred hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc------H
Q 039398 88 KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW------T 161 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~ 161 (172)
.+..++.+|..+ ...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|++ .
T Consensus 3 ~~~~~~~~g~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSL----FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHH----HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 345677778777 555999999999999999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHH
Q 039398 162 DAQAALD 168 (172)
Q Consensus 162 ~~~~~l~ 168 (172)
.++..+.
T Consensus 79 ~~~~~~~ 85 (111)
T 2l6j_A 79 KLQYRLE 85 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 179
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.40 E-value=5.2e-13 Score=76.78 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhH-HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGD-ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
+.+|.++...|++++|+..+++++..+| .... +++.+|.++... |++++|+..|++++..+|++..++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-------VGKDEAYYLMGNAYRKL----GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-------STHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4567777777777777777777777666 3444 666666666333 777777777777777777777666
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
.. +.+.++...|+++...+|++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHhccCccc
Confidence 43 45566666666666666654
No 180
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.40 E-value=3.2e-11 Score=84.30 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCh----hHHHH----HHHH--hhCCCCCCccchhhhhHHHHHhhhHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFK----TSALE----SFDL--ALSIPAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~~A~~----~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
..+|+.+|+++++++|+++.++..++.++.....+ ..... .+.. ++..+| ..+.++..++...
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~-------~~a~~~~alal~~ 287 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN-------NLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC-------cCHHHHHHHHHHH
Confidence 78999999999999999999999999888632111 11111 1222 122233 4555555555444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
... |++++|+..+++++.++|+ +.++..+|.++...|++++|.+.|.+|+.++|..+.
T Consensus 288 l~~----gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 288 LVK----GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHH----TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HhC----CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 222 9999999999999999974 788899999999999999999999999999998864
No 181
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=7.9e-12 Score=88.12 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhccCcccH-----HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDA-----AAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
+++|+..+++++...|.+. .++..+|.++...|++++|...+++++.+.+... .......++..+|.++ .
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~----~ 104 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEIL----F 104 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHH----H
Confidence 8899999999988876542 2677889999999999999999999997654221 1122344456666666 4
Q ss_pred HhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 105 RAGRVDSAIDDLTEAVKIQ--------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.+|++++|+..+++++... |....++.++|.++...|++++|...+++++.+.|.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4599999999999998764 233457778899999999999999999999888765
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.39 E-value=3e-12 Score=73.92 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 123 (172)
+|+++.+++.+|.++...|++++|+..|+++++++| ....+++.+|.++ ..+|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-------DYVGTYYHLGKLY----ERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhh
Confidence 566777777777777777777777777777776666 4445566666666 33377777777777776665
Q ss_pred C
Q 039398 124 D 124 (172)
Q Consensus 124 ~ 124 (172)
|
T Consensus 72 ~ 72 (100)
T 3ma5_A 72 R 72 (100)
T ss_dssp H
T ss_pred h
Confidence 4
No 183
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=2.5e-11 Score=88.11 Aligned_cols=123 Identities=16% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQ----GFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNR 104 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
.+++|+.+|+++....|..+..++.+|.+|... +++++|+.+|+++. | ..+.+++.+|.++.....
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-------g~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P-------GYPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-------GSTHHHHHHHHHHHHSGG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-------CCHHHHHHHHHHHHhCCC
Confidence 377777777777777777777777777777554 67777777777776 3 445555666655321112
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK-----MRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.+++++|+.+|+++... .++.+++++|.+|. .| ++++|+.+|+++. |+++.+...|.
T Consensus 264 -~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg 325 (452)
T 3e4b_A 264 -LGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLG 325 (452)
T ss_dssp -GCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 36677777777776644 35666777776666 44 6677777776666 66666655554
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.38 E-value=1.1e-12 Score=88.85 Aligned_cols=128 Identities=15% Similarity=0.061 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHH-------HHHHHHhCChhHHHHHHHHhhCCCCCCccchhh-hh------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILK-------ALALDLQGFKTSALESFDLALSIPAVKTLTEKE-KG------------ 89 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-~~------------ 89 (172)
+..|...|.+++..+|+..++|..+ +.++...+++.+++..+++.+.+.|.....+.. .+
T Consensus 22 ~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r 101 (282)
T 4f3v_A 22 EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSP 101 (282)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCH
Confidence 8899999999999999999999999 899999999999999999999998844443222 11
Q ss_pred -HHHHHhhhHHHH-----------------------------HHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 039398 90 -DALFKRAEVKMS-----------------------------MNRRAGRVDSAIDDLTEAVKIQDD--NVKALCLLGECY 137 (172)
Q Consensus 90 -~~~~~~~~~~~~-----------------------------~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~ 137 (172)
.+...++..+.. ++...++|++|+..|+.+....+. ...+++++|.++
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 111222222211 123335555555555444332111 134788999999
Q ss_pred HHccCHHHHHHHHHHHHccC
Q 039398 138 EVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 138 ~~~~~~~~A~~~~~~al~~~ 157 (172)
..+|++++|+..|++++.-.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTST
T ss_pred HHCCCHHHHHHHHHHHhcCC
Confidence 99999999999999988544
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.35 E-value=2.1e-12 Score=74.59 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=63.9
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCc
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 160 (172)
....+++.+|.++ ..+|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++.+.|..
T Consensus 5 ~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 5 EDPFTRYALAQEH----LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5667788899888 445999999999999999999999999999999999999999999999999987754
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.35 E-value=1.7e-11 Score=89.59 Aligned_cols=127 Identities=17% Similarity=0.046 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQG---FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
+++|+.+|+++++. .++.+++.+|.++...| ++++|+.+|+++++. ....+++.+|.++..-....
T Consensus 312 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 312 REQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---------GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCC
Confidence 78888888888775 45778888888888766 788899999888875 34567778887774300004
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCC---cHHHHHHHHh
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPS---WTDAQAALDR 169 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 169 (172)
+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|..+|++++..+|+ ++.+...|..
T Consensus 381 ~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 8999999999999886 468999999999998 89999999999999999954 7777666544
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.35 E-value=7.4e-12 Score=91.46 Aligned_cols=123 Identities=8% Similarity=-0.028 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcc--------CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC-CccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF--------DYKDAAAHILKALALDLQGFKTSALESFDLALSIPAV-KTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (172)
|++|+..+++++.+ +|+-..++.++|.+|..+|+|++|+.++++++.+... .....+..+..+.++|.++
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~- 403 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN- 403 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence 78888888887764 3445668999999999999999999999999954211 1115567888899999998
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKI-----QDDN---VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+|++++|+..|++++.+ .|++ .+...+++.++..++.+++|...|+++.+.
T Consensus 404 ---~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 404 ---WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5559999999999999976 3444 456788999999999999999999998753
No 188
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.34 E-value=2e-11 Score=70.01 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=58.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVK-ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
...|++++|+..|++++..+|+++. +++.+|.++...|++++|+..|++++.++|++..++
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3449999999999999999999999 999999999999999999999999999999999877
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.33 E-value=1.4e-10 Score=84.75 Aligned_cols=123 Identities=13% Similarity=-0.079 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
+++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++.. ...+++.+|.++..-...
T Consensus 59 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCC
Confidence 67777777777654 567777777777777 777777777777776542 334455555554220000
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.+++++|+..|+++... +++.+++.+|.+|.. .+++++|+.+|++++.. +++.++..|
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~L 189 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQL 189 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 25566666666665543 345566666666555 55566666666655543 334444333
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1.2e-10 Score=79.94 Aligned_cols=132 Identities=13% Similarity=-0.035 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhccCc--ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhC
Q 039398 30 AKQAEAEADKAISFDY--KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAG 107 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (172)
+++|+..+.+.+..+| ++.+++...+.++..+|+.+.|.+.++++.+.+|.. .|. .-.....++..+..+....+
T Consensus 116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~-~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSG-DNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHH-HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--ccc-chHHHHHHHHHHHHHHhCCc
Confidence 9999999999999987 889999999999999999999999999988765400 000 12223334333222222224
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc----------CCCcHHHHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDD--NVKALCLLGECYEVKKMRDEAKTAYESALKI----------EPSWTDAQAAL 167 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l 167 (172)
++.+|...|+++....|+ .+..+++ ++..+|++++|.+.++.+++. +|+++.+...+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 899999999999888886 3334444 899999999999999988877 48888877444
No 191
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=4.4e-11 Score=84.33 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhccCccc------HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc-hhhhhHHHHHhhhHHHHH
Q 039398 30 AKQAEAEADKAISFDYKD------AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLT-EKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 102 (172)
+++|+..+++++...|.. ..++..+|.++...|++++|+..+++++.+.+..... .+....++..+|.++
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--- 145 (373)
T 1hz4_A 69 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL--- 145 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH---
Confidence 889999999998876543 2347889999999999999999999999754311110 123455666777777
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDD-----NVKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
...|++++|...+.+++...+. ...++..+|.++...|++++|...+++++.+.
T Consensus 146 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 146 -WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp -HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4559999999999999998764 24678899999999999999999999998763
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=4e-11 Score=74.17 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
...++..+|.++...|++++|+.++++++.+.+... .....+.++..+|.++ ..+|++++|+.++++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAY----IFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999997654211 2233445777788877 45599999999999999876543
Q ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 127 ------VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 127 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..++..+|.++...|++++|...+++++.+.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999774
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.26 E-value=1.2e-10 Score=84.51 Aligned_cols=117 Identities=20% Similarity=0.121 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHH-H--HHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALA-L--DLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.+++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++++. ....+++.+|.++ ..
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y----~~ 295 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---------DQPRAELLLGKLY----YE 295 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHH----HH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHH----Hc
Confidence 3889999999998 9999999999998 4 4689999999999999865 4566777888777 32
Q ss_pred hC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 106 AG-----RVDSAIDDLTEAVKIQDDNVKALCLLGECYEV----KKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 106 ~~-----~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
| ++++|+.+|+++. |.++.+++++|.+|.. ..++++|..+|+++... +++.+...|
T Consensus 296 -G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 360 (452)
T 3e4b_A 296 -GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAI 360 (452)
T ss_dssp -CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHH
T ss_pred -CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 5 8999999999988 8889999999988877 34899999999998864 344444444
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=8e-11 Score=84.43 Aligned_cols=125 Identities=11% Similarity=0.005 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhccCcccH-----------------HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccc--------
Q 039398 30 AKQAEAEADKAISFDYKDA-----------------AAHILKALALDLQGFKTSALESFDLALSIPAVKTLT-------- 84 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-------- 84 (172)
|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++...+.....
T Consensus 20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (434)
T 4b4t_Q 20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKT 99 (434)
T ss_dssp HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999999877642 368899999999999999999999887543311100
Q ss_pred -------------------------------hhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCH
Q 039398 85 -------------------------------EKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI------QDDNV 127 (172)
Q Consensus 85 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~ 127 (172)
......++..+|.++ ...|+|++|+..+++++.. .+...
T Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH----YQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----HHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 001122334444444 4559999999999998876 23346
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
.++..+|.++...|++++|...|++++...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999987643
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.15 E-value=6.1e-10 Score=81.45 Aligned_cols=111 Identities=14% Similarity=-0.070 Sum_probs=87.1
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-----QDDN 126 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~ 126 (172)
..+..+...|+|++|+..+++++.+..... ...+..+..+.++|.++ ..+|+|++|+.++++++.+ .|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y----~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL----SYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345556789999999999999995432111 14567777888888888 5559999999999999976 3444
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CCCcHHHHHHH
Q 039398 127 ---VKALCLLGECYEVKKMRDEAKTAYESALKI-----EPSWTDAQAAL 167 (172)
Q Consensus 127 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 167 (172)
...+.++|.+|..+|++++|...|++++.+ .|+++.....+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 567899999999999999999999999965 57777765544
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.14 E-value=7.5e-10 Score=62.88 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=60.1
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
..+..+..+|.++... ......++|...++++++.+|+++.+++.+|..++..|+|++|+..|++++..+|.++.
T Consensus 4 ~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3445556666555211 01122799999999999999999999999999999999999999999999999998544
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.14 E-value=6.6e-10 Score=80.06 Aligned_cols=108 Identities=11% Similarity=0.004 Sum_probs=85.0
Q ss_pred HhCChhHHHHHHHHhhCCCCCC-ccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHH
Q 039398 60 LQGFKTSALESFDLALSIPAVK-TLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-----QDDN---VKAL 130 (172)
Q Consensus 60 ~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~ 130 (172)
..|+|++|+..+++++.+.... ....+..+..+.++|.++ ..+|+|++|+.++++++.+ .|++ ...+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y----~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC----LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH----HhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4688999999999999543211 114567777888888888 5559999999999999976 3444 4679
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcc-----CCCcHHHHHHHHhhh
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKI-----EPSWTDAQAALDRLV 171 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l~ 171 (172)
.++|.+|..+|++++|...|++|+.+ .|+++........|.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999965 588887766555443
No 198
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.14 E-value=5.7e-10 Score=68.45 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccC
Q 039398 65 TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-D-DNVKALCLLGECYEVKKM 142 (172)
Q Consensus 65 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~~~ 142 (172)
..+...|.+.+..++ ....+.|++|.++... ...++.++++..++.++..+ | +..++++++|..+.++|+
T Consensus 15 ~~~~~~y~~e~~~~~-------~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-------VSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHTTC-------CCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHccCC-------CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC
Confidence 455566666666555 3455666666666322 01137789999999999998 7 568999999999999999
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 143 RDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 143 ~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|++|.++++++++++|++..+......+
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999999988776554
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.13 E-value=1.2e-09 Score=73.72 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=91.6
Q ss_pred hccCcccHHHHHHHHHHHHH---h--CC------hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH-HHhCC
Q 039398 41 ISFDYKDAAAHILKALALDL---Q--GF------KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN-RRAGR 108 (172)
Q Consensus 41 ~~~~p~~~~~~~~~a~~~~~---~--~~------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 108 (172)
-..+|++++++++.|..... . |. ...|...++++++++| ....+.+|..+|.+|..+= .--|+
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP-----~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWP-----SYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHhCCCccCCC
Confidence 34578889998888877654 1 22 4688999999999998 1236778888887773310 00299
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCCCc
Q 039398 109 VDSAIDDLTEAVKIQDDN-VKALCLLGECYEV-KKMRDEAKTAYESALKIEPSW 160 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~ 160 (172)
.++|..+|+++++++|+. ..+++.+|..+.. .|+++++.+.+++++..+|..
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999975 9999999999988 599999999999999988773
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.12 E-value=4.1e-09 Score=75.96 Aligned_cols=114 Identities=12% Similarity=-0.037 Sum_probs=88.8
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCC-ccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVK-TLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-----QDDN 126 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~ 126 (172)
....-+...|+|++|+..+++++.+.... ....+.....+.+++.++ ..+|+|++|+.++++++.. .|++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y----~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC----INLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH----HhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 33445667899999999999999764322 225566777788888888 4449999999999999976 3444
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CCCcHHHHHHHHhh
Q 039398 127 ---VKALCLLGECYEVKKMRDEAKTAYESALKI-----EPSWTDAQAALDRL 170 (172)
Q Consensus 127 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l 170 (172)
...++++|.+|..+|++++|...|++++.+ .|+++.....+..|
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 457899999999999999999999999965 57887766655443
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.11 E-value=4.3e-09 Score=84.26 Aligned_cols=133 Identities=18% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhH-------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGD------------------- 90 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~------------------- 90 (172)
+++|+..|.++ +++..+..+|.++.+.|+|++|+++|..+.+..+..... ...+.
T Consensus 1121 ~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id-t~LafaYAKl~rleele~fI~~~n 1194 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE-TELIFALAKTNRLAELEEFINGPN 1194 (1630)
T ss_pred HHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-HHHHHHHHhhcCHHHHHHHHhCCC
Confidence 99999999875 789999999999999999999999999988665321000 00111
Q ss_pred --HHHHhhhHHH----------------------HHHHHhCCHHHHHHHHHHHHHhCC----------------------
Q 039398 91 --ALFKRAEVKM----------------------SMNRRAGRVDSAIDDLTEAVKIQD---------------------- 124 (172)
Q Consensus 91 --~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~~l~~~~---------------------- 124 (172)
.+...|..+. .++.++|++++|++.++++....+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1122222221 134566888888888887743322
Q ss_pred ---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 125 ---DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 125 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
.+++.+..++..|...|.+++|+..++.++.++|.+...+..|.
T Consensus 1275 ~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1275 HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 13344556677888899999999999999999988877775544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.10 E-value=2.4e-10 Score=70.77 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=59.5
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMR----------DEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+.+.+++|+..++++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 338899999999999999999999999999999999876 59999999999999999998877654
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.10 E-value=1.1e-09 Score=63.55 Aligned_cols=84 Identities=12% Similarity=-0.034 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
++.-++.+|..++..|+|..|+.+|+.++...+...........++..+|.++ .++|+++.|+.++++++..+|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~----~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV----YQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHH----HHccCHHHHHHHHHHHHhcCCCC
Confidence 56778999999999999999999999999753211111234566777888777 55599999999999999999999
Q ss_pred HHHHHHHH
Q 039398 127 VKALCLLG 134 (172)
Q Consensus 127 ~~~~~~l~ 134 (172)
..+..+++
T Consensus 80 ~~~~~n~~ 87 (104)
T 2v5f_A 80 QRANGNLK 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhHH
Confidence 98888877
No 204
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=2.8e-09 Score=65.37 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---ChhHHHHHHHHhhCCC-CCCccchhhhhHHHHHhhhHHHHH
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQG---FKTSALESFDLALSIP-AVKTLTEKEKGDALFKRAEVKMSM 102 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
......+...|.+.+..+|.+.++.+++|+++.+.+ +.++++..++..++.+ | .....++|.+|..+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p------~~~rd~lY~LAv~~--- 81 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGN--- 81 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------cchHHHHHHHHHHH---
Confidence 344778888899988889999999999999999988 7779999999999865 3 25677888888777
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
.++++|++|..+++++++.+|++..+....-.+-
T Consensus 82 -~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 82 -YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp -HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5669999999999999999999988776655443
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.09 E-value=2.4e-09 Score=62.13 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=64.7
Q ss_pred hHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 89 GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-------DDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
+..++.+|..+ ...++|..|+..|++++... +..+.++..+|.++..+|+++.|+..+++++.++|+++
T Consensus 5 a~dc~~lG~~~----~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVA----YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHH----HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34467888888 44499999999999999863 34578999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 039398 162 DAQAALD 168 (172)
Q Consensus 162 ~~~~~l~ 168 (172)
.+...+.
T Consensus 81 ~~~~n~~ 87 (104)
T 2v5f_A 81 RANGNLK 87 (104)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 8866554
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=1.3e-08 Score=69.90 Aligned_cols=123 Identities=7% Similarity=-0.071 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhC--ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHH
Q 039398 30 AKQAEAEADKAISFDYK------DAAAHILKALALDLQG--FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMS 101 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (172)
++.|...+++..+.+|+ .....+.-|++....| ++.+|...|+++....|. +. ....+++ ++
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~-~~~lLln---~~-- 221 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT----WK-TQLGLLN---LH-- 221 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HH-HHHHHHH---HH--
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cc-cHHHHHH---HH--
Confidence 89999999999888883 3333444466677777 999999999999886651 11 1222333 33
Q ss_pred HHHHhCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 102 MNRRAGRVDSAIDDLTEAVKI----------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 102 ~~~~~~~~~~A~~~~~~~l~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
..+|++++|...++.+++. +|+++.++.++..+...+|+ +|.+++.++.+.+|+++.+...
T Consensus 222 --~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 222 --LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp --HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred --HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 5559999999999988776 48899999999999999997 8999999999999999986544
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.99 E-value=4.7e-09 Score=59.56 Aligned_cols=72 Identities=21% Similarity=0.055 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHHHHHhCC---hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 039398 44 DYKDAAAHILKALALDLQGF---KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAV 120 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 120 (172)
+|++++.+..+|.+++..++ .++|...+++++.++| ....+++.+|..+ ...|+|++|+..+++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-------~~~rA~~~lg~~~----~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-------YNEAALSLIANDH----FISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-------CCHHHHHHHHHHH----HHcCCHHHHHHHHHHHH
Confidence 57777888888877765555 6788888888888777 6666677777766 33388888888888888
Q ss_pred HhCCCC
Q 039398 121 KIQDDN 126 (172)
Q Consensus 121 ~~~~~~ 126 (172)
..+|.+
T Consensus 71 ~~~p~~ 76 (93)
T 3bee_A 71 DSNDPN 76 (93)
T ss_dssp TCCCTT
T ss_pred hhCCCC
Confidence 777764
No 208
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.95 E-value=4.8e-08 Score=59.29 Aligned_cols=118 Identities=10% Similarity=-0.005 Sum_probs=97.8
Q ss_pred ccCcccHHHHHHHHHHHHHhCCh------hHHHHHHHHhhCCCCC-CccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH
Q 039398 42 SFDYKDAAAHILKALALDLQGFK------TSALESFDLALSIPAV-KTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAID 114 (172)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 114 (172)
-..|++++.|.......-..|+. +.-++.|++++..-|. ....|......|...+.+ ..+ ++.++|.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei----~D~d~aR~ 81 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI----QEPDDARD 81 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH----HCGGGCHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh----cCHHHHHH
Confidence 35799999999999999988999 8899999999965553 333566666777766655 334 89999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 115 DLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.|+.++..+...+.+|...|..-..+|+.+.|.+.+.+++.+.|...+..
T Consensus 82 vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 82 YFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 99999998888899999999999999999999999999999999876643
No 209
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.89 E-value=9.4e-08 Score=76.87 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++|++++++ .+.+.+|+.+|.++...|++++|+..|.++ +....+...+.++ .+.|+|
T Consensus 1092 ldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEAIdsYiKA------------dD~say~eVa~~~----~~lGky 1150 (1630)
T 1xi4_A 1092 LDRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAA----NTSGNW 1150 (1630)
T ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------------CChHHHHHHHHHH----HHcCCH
Confidence 4444444443 467999999999999999999999999886 3344566666666 444888
Q ss_pred HHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVKIQDD---------------------------NVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
++|+++|..+....++ +...+..+|..+...|++++|..+|.++
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 8888888776544322 1223445666666666666666666554
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.88 E-value=8.9e-09 Score=74.24 Aligned_cols=106 Identities=18% Similarity=0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcc-----Cccc---HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC-CccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF-----DYKD---AAAHILKALALDLQGFKTSALESFDLALSIPAV-KTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (172)
+++|+..+++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+... .....+..+..++++|.++
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~- 381 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQ- 381 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHH-
Confidence 89999999999875 3344 567899999999999999999999999943211 1125567888899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKI-----QDDNV---KALCLLGECYEV 139 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~-----~~~~~---~~~~~l~~~~~~ 139 (172)
..+|++++|+..|++++.+ .|+++ ....+++.+...
T Consensus 382 ---~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 382 ---LHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred ---HhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 5559999999999999976 45555 445566666543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.87 E-value=4.2e-08 Score=70.76 Aligned_cols=96 Identities=7% Similarity=-0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcc-----Ccc---cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC-CccchhhhhHHHHHhhhHHH
Q 039398 30 AKQAEAEADKAISF-----DYK---DAAAHILKALALDLQGFKTSALESFDLALSIPAV-KTLTEKEKGDALFKRAEVKM 100 (172)
Q Consensus 30 ~~~A~~~~~~~~~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (172)
|++|+..+++++.+ .|+ -..++.++|.+|..+|+|++|+.++++++.+... .....+..+..++++|.++
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~- 392 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY- 392 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Confidence 78888888888774 344 4567889999999999999999999999943211 1115568888899999998
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH
Q 039398 101 SMNRRAGRVDSAIDDLTEAVKI-----QDDNVKA 129 (172)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~ 129 (172)
..+|++++|+..|++++.+ .|+++.+
T Consensus 393 ---~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 393 ---MGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred ---HhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 5559999999999999986 4666544
No 212
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.81 E-value=4.8e-08 Score=70.14 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 130 LCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 130 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
...+..+|...|++++|+..++.++.++|....++..|.-
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~i 249 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 249 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3346678888899999999999999999888888777643
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.81 E-value=6.2e-08 Score=65.53 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=78.2
Q ss_pred CchhhhhHHHHHHHHHHHHhccCcc--cHHHHHHHHHHHHHh-----CChhHHHHHHHHhhCCCCCCccchhhhhHHHHH
Q 039398 22 SKSSASSLAKQAEAEADKAISFDYK--DAAAHILKALALDLQ-----GFKTSALESFDLALSIPAVKTLTEKEKGDALFK 94 (172)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (172)
+.........+|...++++++++|+ +..+|..+|.+|... |+.++|..+|++++.++|.. ....++.
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~------~id~~v~ 244 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH------DPDHHIT 244 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT------CSHHHHH
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC------CchHHHH
Confidence 4445666688999999999999999 677999999999995 99999999999999999821 2555555
Q ss_pred hhhHHHHHHHH-hCCHHHHHHHHHHHHHhCCCC
Q 039398 95 RAEVKMSMNRR-AGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~~~~ 126 (172)
.|.++ .. +|+++++..+++++++.+|..
T Consensus 245 YA~~l----~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 245 YADAL----CIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHT----TTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHH----HHhcCCHHHHHHHHHHHHcCCCCC
Confidence 66555 33 499999999999999998773
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.77 E-value=6.4e-09 Score=74.60 Aligned_cols=114 Identities=14% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhh---------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEK--------------------- 88 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~--------------------- 88 (172)
+++|++.|.++ .++..+...+..+...|++++|+.+++.+.+..+. +......
T Consensus 48 ~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn 121 (449)
T 1b89_A 48 VKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPN 121 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTTCC-
T ss_pred HHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCc
Confidence 77777777553 35567777777777788888888877777753221 0001111
Q ss_pred hHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 89 GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
..+|..+|..+ ...|.|++|+.+|.++ ..|..+|.++.++|++++|++.++++ .++..|..
T Consensus 122 ~~a~~~IGd~~----~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 122 NAHIQQVGDRC----YDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp -------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHH
Confidence 12444555544 3338888888888765 47778888888888888888888888 35555554
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.75 E-value=2.3e-07 Score=56.48 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH----hCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL----QGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
.++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. ....+++.+|.++..-.--
T Consensus 41 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 41 KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---------NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHCCCCC
Confidence 56699999999876 789999999999999 89999999999999875 4566778888888431000
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGE 135 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 135 (172)
.+++++|+.+|+++.+. .++.+...++.
T Consensus 110 ~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 48999999999999988 45666665553
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.71 E-value=3.3e-07 Score=69.68 Aligned_cols=116 Identities=5% Similarity=-0.009 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHH-HHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSAL-ESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
.+.....|++++...|.++..|+..+..+...|+.++|. ..|++++...| .....++..+.+. ...|+
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-------~s~~Lwl~~a~~e----e~~~~ 393 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-------NSAVLAFSLSEQY----ELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-------TCHHHHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHH----HHhCC
Confidence 445667788888888989999999988888888888887 88888887776 2233344444444 22255
Q ss_pred HHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 109 VDSAIDDLTEAVKI-----------QDD-----------NVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 109 ~~~A~~~~~~~l~~-----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+++|...|++++.. .|. ...+|...+.+....|..+.|...|.+|++.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666665543 132 2234555555555555555555555555544
No 217
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1e-07 Score=68.31 Aligned_cols=122 Identities=12% Similarity=-0.014 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhccC------cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISFD------YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+++|+..+.+++... +....++..+|.++...|+|++|+..+++++...... ........++..+|.++...
T Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 188 (434)
T 4b4t_Q 111 LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL-DDKPSLVDVHLLESKVYHKL- 188 (434)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-SCSTHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHh-
Confidence 677777777766543 3346788999999999999999999999988432211 12335667788888888444
Q ss_pred HHhCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQD---DN----VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
|++++|...+++++...+ +. ...+..+|.++...|++++|..+|.+++..
T Consensus 189 ---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 189 ---RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999987743 22 356778899999999999999999999864
No 218
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.67 E-value=4.7e-07 Score=68.84 Aligned_cols=47 Identities=4% Similarity=-0.176 Sum_probs=43.0
Q ss_pred HHHH-HHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 31 KQAE-AEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 31 ~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
++|. ..|++++...|.+...|+..+......|+++.|...|++++..
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4676 8899999999999999999999999999999999999999964
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.66 E-value=2e-06 Score=50.96 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhH---HHHHHHHhhCCC-CCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTS---ALESFDLALSIP-AVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
...+...|.+....++.+.++.+.+|+++....+... ++..++..+..+ | ...-.++|.+|-.+ .+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p------~~~Rd~lY~LAvg~----yk 86 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGN----YR 86 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH------HHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHH----HH
Confidence 6667777777777778888999999999887766655 777777777643 2 13334444444444 44
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLL 133 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l 133 (172)
+|+|++|..+++.+++..|++..+....
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4666666666666666666665554433
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.55 E-value=4.6e-07 Score=53.70 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 107 GRVDSAIDDLTEAVKIQ-D-DNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+..++|..+...+..+ | ..-+.++.+|..++++|+|+.|..++..+++.+|+|..+......+
T Consensus 52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456999999998887 5 4568999999999999999999999999999999999987766544
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=5.7e-06 Score=60.80 Aligned_cols=131 Identities=9% Similarity=-0.049 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhh--------------------
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKG-------------------- 89 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-------------------- 89 (172)
.......|++++...|..+..|+..+..+...|+.++|...|++++.. |.....+...+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 556778999999999999999999999999999999999999999988 85543221111
Q ss_pred -------------HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHc
Q 039398 90 -------------DALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK-MRDEAKTAYESALK 155 (172)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~ 155 (172)
..|...+. ...+.+..+.|...|.++ ...+.....|...+.+-...+ +++.|...|+.+++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~----~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLN----YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp -------CHHHHHHHHHHHHH----HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHH----HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11111111 123347799999999999 443345677777777766666 69999999999999
Q ss_pred cCCCcHHHHHH
Q 039398 156 IEPSWTDAQAA 166 (172)
Q Consensus 156 ~~p~~~~~~~~ 166 (172)
..|+++..|..
T Consensus 349 ~~~~~~~~~~~ 359 (493)
T 2uy1_A 349 KHPDSTLLKEE 359 (493)
T ss_dssp HCTTCHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99988766543
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.48 E-value=1.1e-05 Score=56.71 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=78.0
Q ss_pred hccCcccHHH--HHHHHHHHHHhCC---hhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHH-
Q 039398 41 ISFDYKDAAA--HILKALALDLQGF---KTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAID- 114 (172)
Q Consensus 41 ~~~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~- 114 (172)
...-|.++++ ++..|..+...+. +.+|+.+|+++++++| +.+.++..++.++...+...........
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-------~~a~A~A~la~a~~~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-------EFTYARAEKALVDIVRHSQHPLDEKQLAA 259 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 3445665554 4566777776544 5899999999999999 4444444444444322222111111111
Q ss_pred ---HHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 115 ---DLT--EAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 115 ---~~~--~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.+. .++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~ll 316 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLL 316 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 122 123557899999999999999999999999999999999986 4444444
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.34 E-value=2.6e-06 Score=50.71 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 107 GRVDSAIDDLTEAVKIQDD-NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+..++|..++..+..+|. .-+.++.+|..+.++|+|+.|.++...+++.+|+|..+......+
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4567899999999999884 468999999999999999999999999999999999987665544
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=5.5e-06 Score=49.95 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 107 GRVDSAIDDLTEAVKIQDD-NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
.+..+++..++..+...|. .-+.++.+|..++++|+|++|.++....++.+|+|..+......+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4567899999999998885 457999999999999999999999999999999999987665543
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.05 E-value=0.00014 Score=45.09 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHhhCCCCC--CccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC---
Q 039398 49 AAHILKALALDLQGFKTSALESFDLALSIPAV--KTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ--- 123 (172)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--- 123 (172)
.+++.-...++..|.|+.|+-....++.+... ..........+++.+|+.+ ...++|..|...|+++++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladal----f~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSL----FHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHHHHH
Confidence 34556667778899999999998887755422 1223444555667777777 44499999999999987652
Q ss_pred ---CC-------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 124 ---DD-------------------NVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 124 ---~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
+. +.+..+.++.|+..++++++|+..++.. ...-..+.+-..|.+|
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANL 164 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHH
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHH
Confidence 11 1268899999999999999999988743 3334455666666554
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.91 E-value=5.6e-05 Score=46.84 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhccCcccH---------HHHHHHHHHHHHhCChhHHHHHHHHhhCCC---CCCcc-------------
Q 039398 29 LAKQAEAEADKAISFDYKDA---------AAHILKALALDLQGFKTSALESFDLALSIP---AVKTL------------- 83 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~------------- 83 (172)
+|+.|+.....++....+++ .++..+|..++..++|..|...|++++... +..+.
T Consensus 35 LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~ 114 (167)
T 3ffl_A 35 LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQ 114 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------------
T ss_pred hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcc
Confidence 38888888877666543333 378999999999999999999999987321 10000
Q ss_pred --chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 84 --TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
......++-|.++.++ .+++++.+|+..++.+ ......+.+-..||..|
T Consensus 115 s~~~~~e~Elkykia~C~----~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 115 SQCLPSEIEVKYKLAECY----TVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --CCCCHHHHHHHHHHHH----HHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHH----HHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 0111234567788777 5559999999987654 22335678888888775
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.74 E-value=0.0018 Score=38.59 Aligned_cols=97 Identities=7% Similarity=-0.093 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCh---hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFK---TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
......-|.+-. ...-.+.+.+++|+++.+..+. .+++..++..+..+| ...-.++|.++--+ .++
T Consensus 23 L~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------~~~Rd~LYyLAvg~----ykl 91 (134)
T 3o48_A 23 LEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGC----YKL 91 (134)
T ss_dssp HHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHH----HHh
Confidence 444455554433 2333688999999999987654 478999988887554 34566677666666 555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
|+|++|..+...+++..|++..+......+-
T Consensus 92 gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 92 GEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 9999999999999999999988766555443
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.73 E-value=0.0021 Score=38.83 Aligned_cols=96 Identities=7% Similarity=-0.066 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCh---hHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFK---TSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
.......|.+-.. ++-++++.+++|+++....+. .+++..++..+..+| ...-.++|.++--+ .++
T Consensus 22 L~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~------~~~RdcLYyLAvg~----ykl 90 (144)
T 1y8m_A 22 LEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGC----YKL 90 (144)
T ss_dssp HHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC------STHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHH----HHh
Confidence 4444455544322 355789999999999987755 478999999887555 24555666666555 667
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGEC 136 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 136 (172)
|+|++|..+++.+|+..|++..+......+
T Consensus 91 ~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 91 GEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999998776554443
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0032 Score=48.60 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHH---hCChhHHHHHHHHhhC--------CCCCCccc---hhhhhHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDL---QGFKTSALESFDLALS--------IPAVKTLT---EKEKGDALFKR 95 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~--------~~~~~~~~---~~~~~~~~~~~ 95 (172)
++.|++.+++....+|.... .+..+.+... ..+--+|+..+.+.++ +.+..... .......+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 67899999999988886543 2233322221 1223456666666652 11111100 11122233334
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 96 AEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
+.++ ...|+|+-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 344 a~FL----l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFL----LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH----HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH----hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4444 44599999999999999999999999999999999999999999776654
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.72 E-value=0.0022 Score=47.14 Aligned_cols=96 Identities=5% Similarity=-0.138 Sum_probs=67.9
Q ss_pred HHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039398 58 LDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECY 137 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 137 (172)
..+.+..+.|...|.++ . .|. .....+...+.+... ..++.+.|...|+.+++..|+++..|...+...
T Consensus 296 ~~r~~~~~~AR~i~~~A-~-~~~------~~~~v~i~~A~lE~~---~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-G-NEG------VGPHVFIYCAFIEYY---ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-T-TSC------CCHHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHh-h-CCC------CChHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 33466788888999998 3 331 112234333333321 214799999999999999999999988888888
Q ss_pred HHccCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039398 138 EVKKMRDEAKTAYESALKIEPSWTDAQAALD 168 (172)
Q Consensus 138 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 168 (172)
...|+.+.|...|+++. .....|....
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~ 391 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMI 391 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHH
Confidence 99999999999999973 3455554443
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.61 E-value=0.0064 Score=44.85 Aligned_cols=123 Identities=11% Similarity=-0.088 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhccC--cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHh
Q 039398 29 LAKQAEAEADKAISFD--YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRA 106 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
..++|.+.|++..... | +..++..+-..+.+.|++++|...++......- ......|..+-.. +.+.
T Consensus 85 ~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------~Pd~~tyn~lI~~----~~~~ 153 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------QPRLRSYGPALFG----FCRK 153 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------CCCHHHHHHHHHH----HHHT
T ss_pred hHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCccceehHHHHH----HHHC
Confidence 3678888888766543 4 567888888999999999999999999875421 0122223222222 2555
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCCCcHH
Q 039398 107 GRVDSAIDDLTEAVKIQ-DDNVKALCLLGECYEVKKMRDEAKTAYESALK--IEPSWTD 162 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 162 (172)
|+.++|.+.|.+..... ..+...+..+-.++...|+.++|.+.+++... ..|+...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999988763 23577888899999999999999999998764 3455443
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.48 E-value=0.0016 Score=47.92 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=66.1
Q ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
++..+|++. +....++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.++..|..+
T Consensus 154 ~l~~LGDL~----RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIA----RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHH----HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 445566655 6558899999999999999999999999999999999999999999999999988888888777543
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.23 E-value=0.0092 Score=36.47 Aligned_cols=101 Identities=14% Similarity=-0.032 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHhccCcc--------cHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHH
Q 039398 28 SLAKQAEAEADKAISFDYK--------DAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVK 99 (172)
Q Consensus 28 ~~~~~A~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (172)
...++-++.|++++..-|- ....|...|.. ...++.++|.+.|+.++++.. ..+.+|...+++.
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-------kFAKiwi~~AqFE 104 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-------KFAFVHISFAQFE 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-------TBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH
Confidence 5677888888888876553 35567777755 577999999999999998632 3377788778777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 039398 100 MSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKK 141 (172)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 141 (172)
.++|+...|...+.+++...|.... ....+..-.+.|
T Consensus 105 ----iRqgnl~kARkILg~AiG~~~k~~~-~le~a~~nl~~~ 141 (161)
T 4h7y_A 105 ----LSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRNLNLQ 141 (161)
T ss_dssp ----HHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHHHHTT
T ss_pred ----HHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHhhhcC
Confidence 4569999999999999999988544 333444444444
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.01 E-value=0.025 Score=35.46 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh--
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-- 122 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 122 (172)
|..++-...++..++-.|+|..++-.+... +.....+....+ |.+.++|..|+..++..+.-
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------------NT~Ts~YYk~LC----y~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKL------------NTCTSKYYESLC----YKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTC------------CBHHHHHHHHHH----HHHTTCHHHHHHHHHHHHTTCS
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhc------------chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccc
Confidence 444456677888888999999988776433 223233333333 36669999999999999832
Q ss_pred ---------------CCCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 123 ---------------QDDNVKA-LCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 123 ---------------~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
+|.+.+. +..+|.++...|+.++|+.+|......+|-.+.+-
T Consensus 94 d~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 94 ERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp BCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 3445444 45679999999999999999999998888766654
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0066 Score=43.85 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++.+....+-......-..++..+|..+...|++++|.+.|.++..... ........++..-++.... +++
T Consensus 113 l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~----~~~~kid~~l~~irl~l~~----~d~ 184 (429)
T 4b4t_R 113 LNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI----STGAKIDVMLTIARLGFFY----NDQ 184 (429)
T ss_dssp HHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT----CCCSHHHHHHHHHHHHHHH----TCH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHh----ccH
Confidence 44444443332222333455788999999999999999999999875332 1123445555555555433 999
Q ss_pred HHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 110 DSAIDDLTEAVKIQ--DDNV----KALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 110 ~~A~~~~~~~l~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..+...+.++.... ..++ ......|..+...++|.+|...|..++...
T Consensus 185 ~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 185 LYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99999999986552 2233 344566888888999999999998887554
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.83 E-value=0.072 Score=37.94 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=70.8
Q ss_pred HHHHHHhCChhHHHHHHHHhhCCCCCCcc------chhhhhHHHH-----HhhhHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 039398 55 ALALDLQGFKTSALESFDLALSIPAVKTL------TEKEKGDALF-----KRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 55 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 123 (172)
|......|+.+.|...+.+++.+-..... .|.......+ .........+...|++.+++..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444568999999999999976532211 1111111111 111111122345699999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 124 DDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
|-+..++..+-.++...|+..+|.+.|+++..
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0043 Score=47.90 Aligned_cols=45 Identities=9% Similarity=-0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLA 74 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 74 (172)
|+-|+...++++...|+...+|+.++.+|..+|+|+.|+-.++.+
T Consensus 353 ~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 353 YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988877
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.63 E-value=0.017 Score=38.75 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=55.4
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
.|+.++++..+...++.+|.+......+...+.-.|+++.|.+-++.+.+++|.....-
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 38999999999999999999999999999999999999999999999999999986644
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.45 E-value=0.074 Score=35.78 Aligned_cols=112 Identities=13% Similarity=-0.034 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCH
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRV 109 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (172)
+++++......++.+|.|......+..++.-.|+++.|...++.+.+++|. ....+..|. +.
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~----~~~~a~~yr--------------~l 74 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE----YLPGASQLR--------------HL 74 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG----GHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hhHHHHHHH--------------HH
Confidence 899999999999999999999999999999999999999999999999881 111111111 11
Q ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 110 DSAIDDLTEAVKI--------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 110 ~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
=.|...=.+++.- .|........-+......|+.++|...-.+++..-|.
T Consensus 75 I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 75 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 1111111222211 1112233444566677789999999998888877664
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.052 Score=39.99 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKA 129 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 129 (172)
.+..+|.+......++.|..+|.+++.+.| ..+..+..+|.+. ...|+.-+|+-+|.+++......+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-------~~G~~~nqLavla----~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVP-------SNGQPYNQLAILA----SSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TBSHHHHHHHHHH----HHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCC-------CCCchHHHHHHHH----hcccccHHHHHHHHHHHhcCCCChhH
Confidence 556788888888999999999999999998 7888888888777 44488999999999998877667788
Q ss_pred HHHHHHHHHH
Q 039398 130 LCLLGECYEV 139 (172)
Q Consensus 130 ~~~l~~~~~~ 139 (172)
..++...+..
T Consensus 223 ~~nL~~~f~~ 232 (497)
T 1ya0_A 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.13 E-value=0.095 Score=42.70 Aligned_cols=108 Identities=13% Similarity=-0.057 Sum_probs=73.7
Q ss_pred ccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCC-CCCcc--chhh-------------hhHHHHHhhhHHHHHHHH
Q 039398 42 SFDYKDAAAHILKALALDLQGFKTSALESFDLALSIP-AVKTL--TEKE-------------KGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 42 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~ 105 (172)
...|.++...+.+|.++...|++++|..+|+++-..- ..... .... ....|+.... ++.+
T Consensus 836 ~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~----LFe~ 911 (1139)
T 4fhn_B 836 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSK----KLFE 911 (1139)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHH----HHHH
T ss_pred hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHH----HHHH
Confidence 3457788888999999999999999999999986321 11110 0000 0111122222 2456
Q ss_pred hCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDD-NV----KALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
.+.++.++++.+.+++..+. +. ..|.++-..+...|+|++|...+...
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 69999999999999987543 32 25777888899999999998877543
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.02 E-value=0.14 Score=32.21 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=77.3
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhh--CCC--CCC------c-cchhhhhHHHHHhhhHHHHHHHHhCCHHHHH
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLAL--SIP--AVK------T-LTEKEKGDALFKRAEVKMSMNRRAGRVDSAI 113 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~--~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 113 (172)
-+...+.+..+.|+...++|..|+.+++..+ +.+ |+- . ....+....+..+|.+. ...|.-++|+
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ll----tq~g~r~EaI 134 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLC----TLSGYREEGI 134 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHH----HHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHH----HHhcCHHHhh
Confidence 3567888999999999999999999999999 332 311 1 12233334445566665 5559999999
Q ss_pred HHHHHHHHhCCCCHHH------------------------------------------------------------HHHH
Q 039398 114 DDLTEAVKIQDDNVKA------------------------------------------------------------LCLL 133 (172)
Q Consensus 114 ~~~~~~l~~~~~~~~~------------------------------------------------------------~~~l 133 (172)
.++.......|-.+.+ ..+.
T Consensus 135 ~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~a 214 (242)
T 3kae_A 135 GHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNA 214 (242)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHH
T ss_pred hHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHH
Confidence 9999887654321110 1123
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 134 GECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 134 ~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
+..+..+|-.+++...|..+.+.+|.
T Consensus 215 a~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 215 ARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcccchhHHHHHHHHHhcCCC
Confidence 66778888889998888888888885
No 243
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.84 E-value=0.36 Score=35.62 Aligned_cols=121 Identities=10% Similarity=-0.029 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcc--CcccHHHHHHHHHHHHHhC---------ChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhH
Q 039398 30 AKQAEAEADKAISF--DYKDAAAHILKALALDLQG---------FKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEV 98 (172)
Q Consensus 30 ~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 98 (172)
.++|+..|++.... .| +..++..+-.++...+ ..++|...|+......- ......+..+-..
T Consensus 42 ~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~------~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 42 VLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV------VPNEATFTNGARL 114 (501)
T ss_dssp HHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC------CCCHHHHHHHHHH
Confidence 78888888877654 34 3444444444444333 35778888888764321 1122233333333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCcH
Q 039398 99 KMSMNRRAGRVDSAIDDLTEAVKIQ-DDNVKALCLLGECYEVKKMRDEAKTAYESALKI--EPSWT 161 (172)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 161 (172)
+ .+.|++++|...|.+..... +.+...|..+-..+...|+.++|.+.|.+.... .|+..
T Consensus 115 ~----~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 115 A----VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp H----HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred H----HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 3 45599999999999987753 335788888889999999999999999987754 45543
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.02 Score=42.19 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=54.3
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHH--------------HHHHHhh-CCCCCCccchhhhhHHHHHhhhHHHHHHHHhCC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSAL--------------ESFDLAL-SIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGR 108 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~--------------~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (172)
|+-...+|+..+.++-..|+..... ..++.+. ..++ ...+..+..+-+.| -..+.
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~------~~qa~l~nllLRnY----L~~~~ 246 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN------ETKAMLINLILRDF----LNNGE 246 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSS------CHHHHHHHHHHHHH----HHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc------chhHHHHHHHHHHH----HccCc
Confidence 3445667888888877777665432 1222222 2222 23343444333333 44499
Q ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 109 VDSAIDDLTEAVKIQDDN-------VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 109 ~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
|+.|..+..++. .|.+ ...++.+|.++.-+++|.+|.+++..|+...|.+.
T Consensus 247 y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 247 VDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp STTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 999999999984 4432 45678899999999999999999999999888653
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.38 Score=34.94 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH---hCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK---IQD 124 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~ 124 (172)
......++.++...|++.+|...+.....-.- ...........+....+++... +++.+|...++++.. ..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q~rl~l~~----~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQMELSILK----GDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhhcccC
Confidence 34567789999999999999999988762110 1112345556666666666444 999999999998743 233
Q ss_pred CCH----HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 125 DNV----KALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 125 ~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+ ..+...|..+...++|.+|..+|..++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333 35677889999999999999999998754
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.21 Score=31.45 Aligned_cols=43 Identities=21% Similarity=0.030 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
++.|.+..+.. ++...|..+|......|+++-|..+|.++-..
T Consensus 21 l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 21 LDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 77777776554 57889999999999999999999999998653
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.61 E-value=0.39 Score=34.34 Aligned_cols=99 Identities=11% Similarity=-0.153 Sum_probs=69.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCH--
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ---DDNV-- 127 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~-- 127 (172)
.+|..|+..|+|.+|...+.+....-... ........++....+++ ..++++.++...+.++.... +.+|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~----~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTY----HALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHH----HHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 78999999999999999988877421100 01123333444444444 56699999999999987653 1333
Q ss_pred --HHHHHHHHHHH-HccCHHHHHHHHHHHHcc
Q 039398 128 --KALCLLGECYE-VKKMRDEAKTAYESALKI 156 (172)
Q Consensus 128 --~~~~~l~~~~~-~~~~~~~A~~~~~~al~~ 156 (172)
.....-|..+. ..++|..|...|-+++.-
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 34566688898 899999999999998743
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.93 E-value=0.9 Score=34.58 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHhh
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDRL 170 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~l 170 (172)
|+++.|..++...-...+......+.+|.++...|+.++|...|+++.. +.+.-.+....+|
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa~~L 360 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAAQRI 360 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHHHHc
Confidence 9999999999876554445688899999999999999999999999985 3444445554444
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.58 E-value=0.81 Score=35.35 Aligned_cols=30 Identities=17% Similarity=-0.156 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+++..|..+|..+...++++.|+.+|.++-
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 456667777777777777777777776653
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.19 E-value=0.84 Score=32.65 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDD--N----VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
|...|+|.+|...+.+.++.-.. + .+++.....+|...+++..+...|.++...
T Consensus 109 ~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 109 YFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 35559999999999988775222 1 356677788999999999999999988754
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.66 E-value=0.44 Score=33.93 Aligned_cols=46 Identities=15% Similarity=-0.022 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+.+++..+..++..+|-+..++..+..++...|+..+|+..|+++-
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777776654
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.62 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=39.1
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
..|+++.|.+..+.. ++...|..+|......|+++-|...|+++-
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 339999999987664 668899999999999999999999998874
No 253
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=91.96 E-value=0.75 Score=24.27 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=22.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHH
Q 039398 131 CLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAA 166 (172)
Q Consensus 131 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 166 (172)
..+|..+...|++++|...|-+|+...|.=......
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666666666666666666666666655444333
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.87 Score=33.78 Aligned_cols=73 Identities=12% Similarity=-0.000 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDN 126 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 126 (172)
...+..+-..|...+.|+.|.....++.- |.........+..+|..|++.... ++|.+|.+++..+++..|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q----~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQ----LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCcc
Confidence 44566778889999999999999999963 322223344566678888888444 99999999999999987754
No 255
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=91.10 E-value=1 Score=32.85 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=64.0
Q ss_pred hhHHHHHHHHhhCCC-----CCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCC----------CCHH
Q 039398 64 KTSALESFDLALSIP-----AVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQD----------DNVK 128 (172)
Q Consensus 64 ~~~A~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----------~~~~ 128 (172)
.+++...+.++.... |......+.+-...+.+++....+|.++++..-+...++..-...+ +-..
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 456666666666321 1111111123334445555555777888999988888865543322 1135
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc-CCCc
Q 039398 129 ALCLLGECYEVKKMRDEAKTAYESALKI-EPSW 160 (172)
Q Consensus 129 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~ 160 (172)
..+.+|..+...++|.+|.+.+..|+.. .|..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 7899999999999999999999999998 7754
No 256
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.82 E-value=1.7 Score=26.30 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=43.9
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..+|+-++--+.+...+..++-+++.+..+|.+|.+.|+..+|.+.+.+|.+.
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45588888777777776777778999999999999999999999999998754
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.32 E-value=6.5 Score=32.15 Aligned_cols=100 Identities=8% Similarity=-0.106 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQ-DDNVK 128 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~ 128 (172)
.+..+-..+.+.|+.++|...+......... ........|..+-.-+ .+.|+.++|.+.|.+..... .-+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~k---G~~PdvvTYNtLI~Gl----ck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK---RKLLTLDMYNAVMLGW----ARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH---HTTCCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc---CCCCCHhHHHHHHHHH----HhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 5677788899999999999999765422000 0001223333332222 45599999999999987653 23567
Q ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHcc
Q 039398 129 ALCLLGECYEVKKM-RDEAKTAYESALKI 156 (172)
Q Consensus 129 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~ 156 (172)
.+..+-.++.+.|+ .++|.+.|++....
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 77777778888887 47888888877644
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.01 E-value=0.89 Score=32.83 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDD---NVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
++..+|.++..+ |+++.|.+.|.++...... ..+.+.....++...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~----Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQI----GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHH----CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456677777555 9999999999998876432 3577888888999999999999999998654
No 259
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.39 E-value=8.7 Score=30.95 Aligned_cols=36 Identities=25% Similarity=0.154 Sum_probs=23.4
Q ss_pred HhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 40 AISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 40 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
.+..-|.++...+.+|.++...|++++|..+|+++-
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344455566666667777777777777777776654
No 260
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=87.79 E-value=2.1 Score=23.19 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..+..++|+++..+|++ .-..|+|++|+.+|..+++
T Consensus 12 ~~~~~~~Ai~lv~~Ave---------------~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVK---------------ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH---------------HHHhccHHHHHHHHHHHHH
Confidence 33446666666666543 3566778877777777764
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.73 E-value=6.4 Score=28.61 Aligned_cols=89 Identities=10% Similarity=-0.142 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcc----Cc--ccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH
Q 039398 30 AKQAEAEADKAISF----DY--KDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN 103 (172)
Q Consensus 30 ~~~A~~~~~~~~~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
+.+|...+.....- .+ .-.+.+.....++...+++..|...++++....-............+...|.++..-
T Consensus 153 ~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e- 231 (445)
T 4b4t_P 153 IDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK- 231 (445)
T ss_dssp HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh-
Confidence 88888888776421 11 135678888999999999999999999864110000012233444555566666433
Q ss_pred HHhCCHHHHHHHHHHHHHh
Q 039398 104 RRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~ 122 (172)
++|.+|-.+|..++..
T Consensus 232 ---~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 232 ---REYLEVAQYLQEIYQT 247 (445)
T ss_dssp ---CCHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHhc
Confidence 8899998888888754
No 262
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.81 E-value=5.8 Score=30.62 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039398 107 GRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESA 153 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 153 (172)
|++++|.+..+ ..++...|..+|..+...|+++.|...|.++
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887653 3456788999999999999999999988876
No 263
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=86.68 E-value=1.4 Score=24.51 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 039398 107 GRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~~~ 125 (172)
|+++.|+.+|-+++...|+
T Consensus 34 g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 34 GDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp TCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 5555555555555555444
No 264
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=83.86 E-value=2.7 Score=27.03 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=38.0
Q ss_pred hhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHccCHH
Q 039398 86 KEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVK-----ALCLLGECYEVKKMRD 144 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~ 144 (172)
.......|.+|.++. ..++|.+|.+.+..|+...|.... ++..+-.+-.-+|++.
T Consensus 11 ~q~v~Y~YYlGr~~~----~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAM----FDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345556678888874 349999999999999999886643 3344444556667654
No 265
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.82 E-value=2.7 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 48 AAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+..+-.++..+...|+|++||++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566788899999999999999888763
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.15 E-value=2.3 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
..+|..+...|++++|..+|-+++...|
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 5689999999999999999999998876
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.86 E-value=7.4 Score=26.89 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHH
Q 039398 25 SASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFD 72 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 72 (172)
.......+|+.+-.+.-...-.+++.+..+|..++..|++.+|..+|-
T Consensus 111 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 111 NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 355667777777766544344689999999999999999999999885
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.57 E-value=9.9 Score=24.43 Aligned_cols=88 Identities=9% Similarity=-0.125 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHH--hccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 28 SLAKQAEAEADKA--ISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 28 ~~~~~A~~~~~~~--~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
..+++++..|... ...||.....|...+..+ ..+...++...|.-.....- -...+..|-..+.++ ..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I-----G~~~AlfYe~wA~~l----E~ 127 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI-----GTKLSLFYEEFSKLL----EN 127 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS-----STTBHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC-----cHHHHHHHHHHHHHH----HH
Confidence 3455666555433 223455556677666654 12335577777766653211 013444444455555 34
Q ss_pred hCCHHHHHHHHHHHHHhCCC
Q 039398 106 AGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~ 125 (172)
.|++.+|...|+..++....
T Consensus 128 ~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 128 AQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHHcCCc
Confidence 48888888888888887643
No 269
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.27 E-value=13 Score=27.20 Aligned_cols=96 Identities=6% Similarity=-0.104 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhccCcc------------cHH----HHHHHHHHHHHhCChhHHHHHHHHhhCCC--C-CCccchhh
Q 039398 27 SSLAKQAEAEADKAISFDYK------------DAA----AHILKALALDLQGFKTSALESFDLALSIP--A-VKTLTEKE 87 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~------------~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~-~~~~~~~~ 87 (172)
....+++...+.++....-+ .-. ....+-.+|++.++..-+...++..-... | ........
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 44588888888887665211 111 12234578899999999988886654222 1 12224445
Q ss_pred hhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC
Q 039398 88 KGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI-QDDN 126 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~ 126 (172)
.....|.+|.++. ..++|.+|.+++..|+.. .|..
T Consensus 219 ~v~Y~YYlGr~~~----~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYL----LNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHH----HHccHHHHHHHHHHHHHhcCCcc
Confidence 6666688888884 349999999999999998 7754
No 270
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=78.54 E-value=26 Score=28.92 Aligned_cols=60 Identities=7% Similarity=-0.159 Sum_probs=46.6
Q ss_pred HHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCcHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKI----QDDNVKALCLLGECYEVKKMRDEAKTAYESALKI--EPSWTD 162 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 162 (172)
+.+.|+.++|...|....+. ..-+...|..+-..+.+.|+.++|.+.|.+.... .|+-..
T Consensus 137 lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 46669999999999765432 2345788999999999999999999999988654 455433
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.47 E-value=15 Score=25.37 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYE 151 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 151 (172)
.++..+..+|..++..|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578889999999999999999888874
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=75.28 E-value=4.2 Score=21.72 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 50 AHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
-...+|.-+...|+|+.|+.+|+.++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 346678889999999999999999985
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=74.05 E-value=5.4 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=23.7
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 135 ECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 135 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
.++.+.|.|++|.+.+++.+..+|++......|..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~ 156 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLN 156 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 45667777888888888877776666655554443
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.62 E-value=9.3 Score=21.13 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=8.1
Q ss_pred hCCHHHHHHHHHH
Q 039398 106 AGRVDSAIDDLTE 118 (172)
Q Consensus 106 ~~~~~~A~~~~~~ 118 (172)
.|+|++||++.++
T Consensus 28 ~gkydeAIech~k 40 (97)
T 2crb_A 28 AGKYEEAISCHRK 40 (97)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3677777666544
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.53 E-value=16 Score=23.36 Aligned_cols=35 Identities=11% Similarity=-0.062 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcH
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIEPSWT 161 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 161 (172)
....+.+|.++...++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45788899999999999999999999999988654
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.11 E-value=5.8 Score=31.95 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 154 (172)
...+.++-+. ..+.-.|.++..-+.+|.++...|++++|...|+++-
T Consensus 821 ~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 821 FLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3446665443 3456678888888999999999999999999999876
No 277
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=71.69 E-value=15 Score=22.78 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 25 SASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
...+....|+..+..+...+|......-.+..++....+....+..|...+..+|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP 121 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADP 121 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455677888888888888888777778888888888888888888888888887
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.50 E-value=9.7 Score=20.45 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHhCChhHHHHHHHHhhC
Q 039398 58 LDLQGFKTSALESFDLALS 76 (172)
Q Consensus 58 ~~~~~~~~~A~~~~~~~l~ 76 (172)
.-..|+|++|+.+|..+++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456777777777766664
No 279
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=69.93 E-value=3.7 Score=26.31 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=17.2
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCcHHHHHHH
Q 039398 135 ECYEVKKMRDEAKTAYESALKIEPSWTDAQAAL 167 (172)
Q Consensus 135 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 167 (172)
.++.+.|.+++|.+.+++....+|++......|
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 456666777777777777666665554444433
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.32 E-value=16 Score=22.17 Aligned_cols=42 Identities=17% Similarity=-0.035 Sum_probs=33.7
Q ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 36 EADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 36 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
.+...+..++-+|..++.+|..|.+.|+..+|-+.+.++.+.
T Consensus 113 i~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 113 IGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334444556667999999999999999999999999999864
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.38 E-value=50 Score=27.32 Aligned_cols=92 Identities=11% Similarity=-0.115 Sum_probs=62.9
Q ss_pred HHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh----------
Q 039398 53 LKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI---------- 122 (172)
Q Consensus 53 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------- 122 (172)
.+...+...+.++-+.+.. ..+..+ +...|.+|.++..+ |++++|..+|+++-.-
T Consensus 817 ~l~~~l~~~~~~~~~~~l~-~~~~~~----------~~~~yl~g~~~L~~----ge~~~A~~~F~kaa~~~~~~~~l~~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLI-GWLNSD----------PIAVYLKALIYLKS----KEAVKAVRCFKTTSLVLYSHTSQFAV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHH-HHSCCC----------HHHHHHHHHHHHHT----TCHHHHHHHHHTCCCSCTTCCCSCSS
T ss_pred HHHHHHHHhhhHHHHHHHh-hhccCC----------cHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccchhhhh
Confidence 4455566778777665533 233322 22347788888666 9999999999886211
Q ss_pred -------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 123 -------------QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 123 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
....+..+..+..++...+.++.+++.-+.|++..+.
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 931 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Confidence 0112345677778888999999999999999977643
No 282
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=68.33 E-value=23 Score=23.38 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHHc
Q 039398 110 DSAIDDLTEAVK-----IQDDNVK---ALCLLGECYE-VKKMRDEAKTAYESALK 155 (172)
Q Consensus 110 ~~A~~~~~~~l~-----~~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al~ 155 (172)
+.|...|+.++. +.|.+|- ...+.+..|+ .++++++|...-++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777764 4566653 3344454444 48999999888777763
No 283
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=67.71 E-value=19 Score=26.58 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHhccCc-----------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDY-----------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p-----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
....++..+..++.|+..-| +...++..+|.++...++|++|+...++++.
T Consensus 170 ~~evy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 170 VSEVYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567777888887766543 2355888899999999999999999999873
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.31 E-value=19 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 124 DDNVKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
...+..|...|..+...|++.+|.+.|+..++
T Consensus 147 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 147 QESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 285
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=65.41 E-value=24 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHhccCc--------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 25 SASSLAKQAEAEADKAISFDY--------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+....++..+..++.++..-| +...++..+|.++.-.|+|++|....+.+|.
T Consensus 165 t~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 165 TVAECYTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp BHHHHHHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344567888888888876544 2356888899999999999999999998874
No 286
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=65.29 E-value=27 Score=25.50 Aligned_cols=52 Identities=15% Similarity=-0.005 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHhccCcc--------cHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 25 SASSLAKQAEAEADKAISFDYK--------DAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+....++..+..++.|+..-|. ...++..+|.++...|+|++|+...+.+|.
T Consensus 171 t~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 171 TVAQCYEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp BHHHHHHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455688888889888876543 356788899999999999999999999884
No 287
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.13 E-value=28 Score=23.34 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH----hCCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHHc
Q 039398 109 VDSAIDDLTEAVK----IQDDNVK---ALCLLGECYE-VKKMRDEAKTAYESALK 155 (172)
Q Consensus 109 ~~~A~~~~~~~l~----~~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al~ 155 (172)
.+.|...|+.++. +.|.+|- ...+.+..|+ .++++++|...-++++.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777887775 3555552 3344455444 48999999888777763
No 288
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=63.72 E-value=21 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHhccCc--------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDY--------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
....++..+..++.|+..-| +...+...+|.++...|+|++|+...+.++.
T Consensus 160 ~~evy~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 160 VAQAYDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45568888888888876544 2456788899999999999999999998874
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.60 E-value=39 Score=23.68 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 039398 124 DDNVKALCLLGECYEVKKMRDEAKTAY 150 (172)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 150 (172)
-.+++.+..+|..+++.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 467888999999999999999998887
No 290
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=61.57 E-value=17 Score=19.49 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHhCChhHHHHHHHHhhC
Q 039398 57 ALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 57 ~~~~~~~~~~A~~~~~~~l~ 76 (172)
-.-..|+|++|+.+|..+++
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33556788888877777765
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.31 E-value=26 Score=21.65 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHH--hccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHHHH
Q 039398 28 SLAKQAEAEADKA--ISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMNRR 105 (172)
Q Consensus 28 ~~~~~A~~~~~~~--~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (172)
..+++++..|... ...||....+|+..+... +++...|.-+....- -...+..|...+.++ ..
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~I-----G~~~AlfY~~wA~~l----E~ 108 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGI-----GVSLAQFYISWAEEY----EA 108 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTS-----STTBHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCc-----chhhHHHHHHHHHHH----HH
Confidence 3455555554332 222344445555555442 334455555443211 013333444444444 33
Q ss_pred hCCHHHHHHHHHHHHHhCCC
Q 039398 106 AGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~ 125 (172)
.|++.+|.+.|+..++....
T Consensus 109 ~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 109 RENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 37777777777777776543
No 292
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=61.02 E-value=43 Score=23.98 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCcHHHHHHHHhh
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKI------EPSWTDAQAALDRL 170 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~l 170 (172)
...-.+..+|-.+++.+++.+|...|..+-.. ..+|.++++.+-++
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 44567788888999999999999999877533 23456666555443
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=60.58 E-value=47 Score=24.30 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCcHHHHHHHHhh
Q 039398 124 DDNVKALCLLGECYEVKKMRDEAKTAYESALKI------EPSWTDAQAALDRL 170 (172)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~l 170 (172)
....-.+..+|-.++..+++.+|...|..+-.. ..+|.++++.+-++
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 345667888899999999999999999887633 34566666655443
No 294
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=60.56 E-value=35 Score=22.89 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHH
Q 039398 110 DSAIDDLTEAVK-----IQDDNVK---ALCLLGECYE-VKKMRDEAKTAYESAL 154 (172)
Q Consensus 110 ~~A~~~~~~~l~-----~~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al 154 (172)
+.|...|+.++. +.|.+|- ...+.+..|+ .++++++|...-++++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566777777764 4566653 3344454444 4789888888777766
No 295
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.55 E-value=27 Score=26.89 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=34.6
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 105 RAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 105 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
..|+|.-|.+....++..+|++..+...++.++.++|.
T Consensus 461 ~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 461 ARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999998874
No 296
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=58.75 E-value=21 Score=20.66 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 29 LAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.+++|+.++.+++ -.-..|+|++|+.+|..+++
T Consensus 14 ~l~kAi~lv~~Av---------------e~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 14 NLQKAIDLASKAA---------------QEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHHHccCHHHHHHHHHHHHH
Confidence 4666776666664 23455777777777777664
No 297
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=58.45 E-value=39 Score=22.71 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVK-----IQDDNVK---ALCLLGECYE-VKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~-----~~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al 154 (172)
.+.|...|+.+.. +.|.+|- ...+.+..|+ -++++++|...-++++
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777764 4566653 3444555444 4789998888777765
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.24 E-value=30 Score=21.33 Aligned_cols=69 Identities=7% Similarity=-0.024 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhh-HHHHH-HHHhCCHHHHHHHHHHHHHh
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAE-VKMSM-NRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~A~~~~~~~l~~ 122 (172)
.-+..|..+++.|+|=+|-+.++......+.... ....+-.+.+ +..++ +.+.|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~----er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNT----ESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSH----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4466788889999999999999999976542210 1122222222 11222 23349999999999999874
No 299
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=58.11 E-value=45 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.012 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHhccC-------------cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 26 ASSLAKQAEAEADKAISFD-------------YKDAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~-------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
....|+..+..++.|+..- ++...+...+|.++...++|++|....+.++..
T Consensus 156 ~~evy~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 156 VAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4455677777776665432 234567888999999999999999999999853
No 300
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=57.10 E-value=52 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..++..+++++...|++++|....++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45788899999999999999999999885
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=56.75 E-value=32 Score=21.20 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhccCccc------HHHHHH---HHHHHHHhCChhHHHHHHHHhh
Q 039398 5 RHFVIGAQLLAQARSSKSKSSASSLAKQAEAEADKAISFDYKD------AAAHIL---KALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~---~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+.|..|..++.... |-+|-+.++.+....+.. ...+.+ .|..+...|+...|...+.+++
T Consensus 34 ~~~~~~i~lFn~g~-----------yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 34 RAVVHGVRLYNSGE-----------FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHHHTTC-----------HHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555555555544 888999999998876544 222333 3556677899999999999998
Q ss_pred C
Q 039398 76 S 76 (172)
Q Consensus 76 ~ 76 (172)
.
T Consensus 103 ~ 103 (161)
T 2ijq_A 103 Q 103 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 302
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=56.01 E-value=31 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.028 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHhccCc--------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 25 SASSLAKQAEAEADKAISFDY--------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+....++..+..++.++..-| +...++..+|.++...++|++|+...++++.
T Consensus 149 ~~~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 149 SQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345668888888888876544 2355788899999999999999999999885
No 303
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=55.18 E-value=25 Score=19.40 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhhCCCCCCccchhhhhHHHHHhhhHHHHHH-HHhCCHHHHHHHHHHHHHh
Q 039398 52 ILKALALDLQGFKTSALESFDLALSIPAVKTLTEKEKGDALFKRAEVKMSMN-RRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 52 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~ 122 (172)
+..|..+++.|+|=+|-+.++......|. .....+-.+-++..+++ ...|+. |...+.+++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~------~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG------EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 45677888999999999999998865441 11222222222222221 234776 88888887663
No 304
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=53.84 E-value=60 Score=23.60 Aligned_cols=29 Identities=38% Similarity=0.361 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..++..+|+++...|++++|....++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45788899999999999999999999875
No 305
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.42 E-value=42 Score=21.57 Aligned_cols=67 Identities=7% Similarity=-0.128 Sum_probs=49.3
Q ss_pred hhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 87 EKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI--QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
....+|...+... ..+...+..+.|.-.... ....+..|...|..+...|++.+|.+.|+..++...
T Consensus 78 RYLklWl~Ya~~~-----~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 78 RFLKIWIWYINLF-----LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh-----cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4445555555441 015567888888777665 455678888999999999999999999999997763
No 306
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=53.25 E-value=65 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..++..+|++|...|++++|....++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457888999999999999999999999864
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.45 E-value=39 Score=26.01 Aligned_cols=42 Identities=10% Similarity=-0.065 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 039398 128 KALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQAALDR 169 (172)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 169 (172)
+.....|......|+|.-|.+....++..+|++.+++..++.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~ 491 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQAD 491 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 456667888889999999999999999999999998766543
No 308
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.58 E-value=33 Score=19.84 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC
Q 039398 27 SSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA 79 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~ 79 (172)
...+++|..++.++++.+.. |.-...+.-|.+++..+.++|.+..
T Consensus 16 k~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 34588899999999887662 3333344456778888888887765
No 309
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=50.83 E-value=52 Score=24.36 Aligned_cols=51 Identities=14% Similarity=-0.050 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHhccCcc-----------cHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDYK-----------DAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
....++..+..++.|+..-|. ...++..+|.++...++|++|....++++.
T Consensus 149 ~~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 149 EKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888887765442 345788899999999999999999999985
No 310
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=50.38 E-value=65 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 110 DSAIDDLTEAVKIQDD--------NVKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 110 ~~A~~~~~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
+.-+..++.++..-|. ...++..+|++|...|++++|....++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4445555555554332 2457888999999999999999999999864
No 311
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.20 E-value=45 Score=24.41 Aligned_cols=51 Identities=22% Similarity=0.022 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHhccCc-----------------------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDY-----------------------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p-----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
....++..+..++.++..-| +...++..+|.++.-.|+|++|+...++++.
T Consensus 152 ~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 152 AQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45567777777777765432 1245788899999999999999999999884
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.89 E-value=55 Score=20.20 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 112 AIDDLTEAVKI--QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 112 A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
..+.|...... ....+..|...|..+...|++.+|.+.|+.+++...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 55556555544 455678889999999999999999999999998763
No 313
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.49 E-value=80 Score=21.96 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCcc-c--hhhhhHHHHHhhhHHH-----HHHHH-hCC--HHHHHHHHHH
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKTL-T--EKEKGDALFKRAEVKM-----SMNRR-AGR--VDSAIDDLTE 118 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~-----~~~~~-~~~--~~~A~~~~~~ 118 (172)
..+..|.-++..|++++|+..|+..+..-|--.. . ......-+..+..-|. ++.++ ++. .++-.+.++-
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 4566788889999999999999999854331111 1 1111111222222221 11111 111 1221221211
Q ss_pred HH-----HhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHccCCCcHH
Q 039398 119 AV-----KIQDDNVKALCLLG-ECYEVKKMRDEAKTAYESALKIEPSWTD 162 (172)
Q Consensus 119 ~l-----~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~ 162 (172)
+- .+.|.+...-...| ...++.++|..|..+-++.+++.|....
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 11 11222111111222 3567889999999999999999887544
No 314
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=42.45 E-value=80 Score=23.53 Aligned_cols=51 Identities=18% Similarity=-0.025 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHhccCc-------------ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 26 ASSLAKQAEAEADKAISFDY-------------KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
....++..+..++.|+..-| +...++..+|.++...++|++|....+.++.
T Consensus 163 ~~ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 163 QADILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34557777777777766544 1245788899999999999999999999883
No 315
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.17 E-value=1e+02 Score=22.17 Aligned_cols=54 Identities=17% Similarity=-0.031 Sum_probs=37.4
Q ss_pred cCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 20 SKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 20 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
..+.+....+|.+|+..-+.-.. ......+..+|-.+++.+++.+|+..+-.+-
T Consensus 270 t~gr~~~l~L~~~AI~sa~~yY~--n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 270 TPGRPPAEELFKEAITVAKREYS--DHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc--cCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 33444455566666665554432 3345567788889999999999999998875
No 316
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=39.72 E-value=51 Score=18.63 Aligned_cols=32 Identities=28% Similarity=0.064 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..++.....-|.-..+.|+|++|...++.+-+
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777788888899999999999888753
No 317
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.63 E-value=1.3e+02 Score=23.14 Aligned_cols=117 Identities=10% Similarity=-0.061 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCC------------C--C---ccchhhh----
Q 039398 30 AKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLALSIPA------------V--K---TLTEKEK---- 88 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~------------~--~---~~~~~~~---- 88 (172)
+..|..+|...-......+...+.+|..+...|+.++|...|.++..... . . .......
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 78888888876665556788899999999999999999999998875321 0 0 0000000
Q ss_pred hHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039398 89 GDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYES 152 (172)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 152 (172)
....+..+..+ ...|....|...+...+... +..-...++.+....|.++.++....+
T Consensus 381 ~~~~~~r~~~L----~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 381 QGPEMARVREL----MYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HSHHHHHHHHH----HHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cChHHHHHHHH----HHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00011122222 44589999988887776542 345556778888888888887765544
No 318
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.21 E-value=48 Score=18.18 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHhhCC
Q 039398 47 DAAAHILKALALDLQGFKTSALESFDLALSI 77 (172)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 77 (172)
.+.....-|.-+++.++|.+|...++++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4566777788899999999999999999843
No 319
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=38.94 E-value=53 Score=18.52 Aligned_cols=32 Identities=22% Similarity=0.044 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 45 YKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 45 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
..+......-|.-..+.|+|++|...++.+-+
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677778888889999999888887743
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.66 E-value=81 Score=20.62 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=19.7
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCC
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDD 125 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~ 125 (172)
+...|++.+|...|+..++....
T Consensus 160 lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 160 FESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHcCCHHHHHHHHHHHHHcCCc
Confidence 46669999999999999998755
No 321
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=38.31 E-value=1e+02 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..++..+|.++...+++++|....++++.
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45788899999999999999999998874
No 322
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=37.95 E-value=86 Score=20.71 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHH-HHHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVK-----IQDDNVK---ALCLLGEC-YEVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~-----~~~~~~~---~~~~l~~~-~~~~~~~~~A~~~~~~al 154 (172)
.+.|...|+.+.. +.|.+|- ...+.+.. |.-++++++|...-++++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777754 4566653 33444544 445789998888777765
No 323
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=37.42 E-value=1.2e+02 Score=22.22 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcc------CCCcHHHHHHHHh
Q 039398 125 DNVKALCLLGECYEVKKMRDEAKTAYESALKI------EPSWTDAQAALDR 169 (172)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~ 169 (172)
...-.+..+|-.+...+++.+|...|..+-.. ..+|.+.++.+..
T Consensus 301 ~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~e 351 (489)
T 4gq4_A 301 EHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 351 (489)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHH
T ss_pred CcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHH
Confidence 34567778888888889999999988877532 3456666655543
No 324
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=36.73 E-value=61 Score=23.76 Aligned_cols=52 Identities=8% Similarity=-0.136 Sum_probs=40.9
Q ss_pred hhhhHHH-HHHHHHHHHhcc-Cc--------ccHHHHHHHHHHHHHhC---------ChhHHHHHHHHhhC
Q 039398 25 SASSLAK-QAEAEADKAISF-DY--------KDAAAHILKALALDLQG---------FKTSALESFDLALS 76 (172)
Q Consensus 25 ~~~~~~~-~A~~~~~~~~~~-~p--------~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~~l~ 76 (172)
+....++ ..+..++.|+.. -| +...++..+|.++...+ +|++|....+++|.
T Consensus 155 ~~~evy~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 155 PVKEIYDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp CHHHHHHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 3455688 788888888876 33 23567888999999888 89999999999884
No 325
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.67 E-value=1.1e+02 Score=21.41 Aligned_cols=114 Identities=17% Similarity=0.043 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc---cchhhhhHHHHHhhhHHH-----HHHHH-hCCHHHHHHHHHHH-
Q 039398 50 AHILKALALDLQGFKTSALESFDLALSIPAVKT---LTEKEKGDALFKRAEVKM-----SMNRR-AGRVDSAIDDLTEA- 119 (172)
Q Consensus 50 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~A~~~~~~~- 119 (172)
..+..|.-++..|++++|+..|+..+..-|-.. ........-+....+-|. ++-++ ++. ++-.+.++-+
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~-~~~kR~lELAA 194 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-GNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHH
Confidence 355678888999999999999999884322110 011111111222222111 11111 111 1101111111
Q ss_pred ----HHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCcHHHH
Q 039398 120 ----VKIQDDNVK-ALCLLGECYEVKKMRDEAKTAYESALKIEPSWTDAQ 164 (172)
Q Consensus 120 ----l~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 164 (172)
..+.|..-. ++..--...++.++|..|..+-++.+++.|....+-
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~ 244 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE 244 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 011121111 111222356788999999999999999998765543
No 326
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.85 E-value=74 Score=19.35 Aligned_cols=49 Identities=4% Similarity=-0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 039398 110 DSAIDDLTEAVKI--QDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEP 158 (172)
Q Consensus 110 ~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 158 (172)
++..+.|.-.... ....+..+...|..+...|++++|.+.|+..++...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3466777666554 345678888899999999999999999999997754
No 327
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=35.11 E-value=1.3e+02 Score=21.93 Aligned_cols=31 Identities=26% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKIE 157 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 157 (172)
..++..+|+++...+++++|....++++...
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998643
No 328
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.79 E-value=1.3e+02 Score=21.93 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..++..+|+++...|++++|....++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 357888999999999999999999999853
No 329
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=34.70 E-value=65 Score=18.36 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 46 KDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
.++.....-|.-..+.|+|++|...++.+-+
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667777777888999999988888743
No 330
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=33.65 E-value=1.1e+02 Score=20.70 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH-----h--CCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHHcc
Q 039398 109 VDSAIDDLTEAVK-----I--QDDNVK---ALCLLGECYE-VKKMRDEAKTAYESALKI 156 (172)
Q Consensus 109 ~~~A~~~~~~~l~-----~--~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~al~~ 156 (172)
.+.|...|+.|.. + .|.+|- ...+.+..|+ -++++++|...-++++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3556666666653 3 566653 3444555544 579999999888887654
No 331
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=33.43 E-value=73 Score=18.54 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHHHHhCChhHHHHHHHHhhC
Q 039398 44 DYKDAAAHILKALALDLQGFKTSALESFDLALS 76 (172)
Q Consensus 44 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 76 (172)
+..++...+.-|.-..+.|+|++|...++.+-+
T Consensus 33 ~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 33 NSGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888899999999999888753
No 332
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.09 E-value=1.3e+02 Score=21.38 Aligned_cols=89 Identities=8% Similarity=-0.188 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhccC-----------------cccHHHHHHHHHHHHHhCChhHHHHHHHHhhCCCCCCc-cchhhhhH
Q 039398 29 LAKQAEAEADKAISFD-----------------YKDAAAHILKALALDLQGFKTSALESFDLALSIPAVKT-LTEKEKGD 90 (172)
Q Consensus 29 ~~~~A~~~~~~~~~~~-----------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~ 90 (172)
..+++++++++....- .....+...++..+...|+..+|...++++-..-.... ......+.
T Consensus 91 d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~ 170 (393)
T 4b4t_O 91 DFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNS 170 (393)
T ss_dssp CHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHH
Confidence 3778888887653321 11234566778899999999999999988863211000 01112233
Q ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 039398 91 ALFKRAEVKMSMNRRAGRVDSAIDDLTEAVK 121 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 121 (172)
.+...+.++ ...+++..+....-..+.
T Consensus 171 ~y~~~~~~~----~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 171 FYSTNSQYF----KFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHhhhHHHHHHHHHHHHh
Confidence 333344444 344677666655555443
No 333
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=32.72 E-value=1.5e+02 Score=21.93 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALKI 156 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 156 (172)
..++..++.++...+++++|....++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999864
No 334
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=32.58 E-value=1.4e+02 Score=22.00 Aligned_cols=73 Identities=15% Similarity=-0.008 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHhc--------------CCchhhhhHHHHHHHHHHHHhccCcc---------cHHHHHHHHHHHH-
Q 039398 4 KRHFVIGAQLLAQARSS--------------KSKSSASSLAKQAEAEADKAISFDYK---------DAAAHILKALALD- 59 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~- 59 (172)
.-+|++|..++.-.+.. ....+....++.-+..++.++..-|. ...++..+|.+++
T Consensus 121 Ea~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~ 200 (499)
T 3jys_A 121 QARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLN 200 (499)
T ss_dssp HHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 44566777666655510 11233456788888888888775442 3446777888777
Q ss_pred -----HhCChhHHHHHHHHhhC
Q 039398 60 -----LQGFKTSALESFDLALS 76 (172)
Q Consensus 60 -----~~~~~~~A~~~~~~~l~ 76 (172)
..++|++|+...++++.
T Consensus 201 ~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 201 AEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhhccChhHHHHHHHHHHHHHh
Confidence 46899999999999983
No 335
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.63 E-value=0.34 Score=35.97 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 039398 103 NRRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTA 149 (172)
Q Consensus 103 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 149 (172)
|...|-+++-+..++.++.+..-....+..||.+|.+= ++++-.++
T Consensus 239 YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 239 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp SSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 56669999999999999998888888899999888653 33443333
No 336
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.51 E-value=64 Score=17.33 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=21.5
Q ss_pred HHHHHHHHHH---hcCCchhhhhHHHHHHHHHHHHhccCccc
Q 039398 9 IGAQLLAQAR---SSKSKSSASSLAKQAEAEADKAISFDYKD 47 (172)
Q Consensus 9 ~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 47 (172)
.|..++.++. ..+.......+|.+|++.|-.++...|+.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~ 56 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 3444444443 33334556666677777777766665543
No 337
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=30.60 E-value=41 Score=14.74 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHhC
Q 039398 107 GRVDSAIDDLTEAVKIQ 123 (172)
Q Consensus 107 ~~~~~A~~~~~~~l~~~ 123 (172)
+-|++|+..|+.++...
T Consensus 16 KayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 16 KAYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 55888888888887654
No 338
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=28.88 E-value=98 Score=18.60 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=28.5
Q ss_pred hCCCCCCcc-chhhhhHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Q 039398 75 LSIPAVKTL-TEKEKGDALFKRAEVKMSMNRRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 75 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 122 (172)
+..+|..+. .|...+..++..|..+... |+.+.|.-.|-+...+
T Consensus 25 ~~v~~~i~l~~ylrta~~llr~A~~y~~e----gd~e~AYily~R~~~L 69 (146)
T 2xze_A 25 VEVNEDIPPRRYFRSGVEIIRMASIYSEE----GNIEHAFILYNKYITL 69 (146)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 355554444 4555666666777766433 9999998888886443
No 339
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=27.36 E-value=1.9e+02 Score=21.34 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=37.7
Q ss_pred cCCchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 20 SKSKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 20 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
..+.+....+|.+|+..-+.-.. ......+..+|-.+++.+++.+|+..+-.+-
T Consensus 292 t~gr~~~~~L~~~AI~sa~~~Y~--n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 292 TPGRPDPLTLYHKGIASAKTYYR--DEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc--cCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 33444555666666665554432 3345567788889999999999999998875
No 340
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=26.92 E-value=1.1e+02 Score=19.34 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=11.2
Q ss_pred HHhCCHHHHHHHHHHHHHh
Q 039398 104 RRAGRVDSAIDDLTEAVKI 122 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~ 122 (172)
..+|+|++|.++..+....
T Consensus 43 lql~~ydea~~yI~~~~~~ 61 (192)
T 1ixm_A 43 LSLQKYDRVFEMIEEMVID 61 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3446666666666665443
No 341
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=26.83 E-value=72 Score=17.20 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Q 039398 108 RVDSAIDDLTEAVKIQDDNVKAL 130 (172)
Q Consensus 108 ~~~~A~~~~~~~l~~~~~~~~~~ 130 (172)
...+++..-.+.++.+|++|..+
T Consensus 25 ~~~~~v~~Ai~~L~~~PsnPa~L 47 (85)
T 2ca5_A 25 TLQGELTLALDKLAKNPSNPQLL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHH
Confidence 33444444445555666666543
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.67 E-value=89 Score=20.48 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=29.4
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 039398 104 RRAGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKM 142 (172)
Q Consensus 104 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 142 (172)
.+.|.|++|.+.+++.+..+|.+-.....|..+-....-
T Consensus 125 iek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 555999999999999999877766666666665555443
No 343
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.60 E-value=85 Score=17.11 Aligned_cols=20 Identities=5% Similarity=-0.225 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHhccCc
Q 039398 26 ASSLAKQAEAEADKAISFDY 45 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p 45 (172)
...+|.+|+++|..++...|
T Consensus 34 Al~~Y~~Aie~l~~alk~e~ 53 (93)
T 1wfd_A 34 ALVCYQEGIDMLLQVLKGTK 53 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 33344444444444444433
No 344
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=26.46 E-value=65 Score=23.28 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHhccCcc------------cHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 26 ASSLAKQAEAEADKAISFDYK------------DAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
....++..+..++.| ..-|. ...++..+|.++...|+|++|+...+.++
T Consensus 168 ~~evy~~I~~DL~~A-~~Lp~~~~~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 168 VKQIYEHILSDLENI-SALDTEVNTYTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHTSCC-TTSBCCSSSHHHHHSCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHH-hccccccccCccCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 445577777777777 65443 23467888999999999999999999987
No 345
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=24.62 E-value=73 Score=19.67 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 039398 111 SAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDEAKTAYESALKIEPS 159 (172)
Q Consensus 111 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 159 (172)
.|...+..+...+|......-.+..++....+....+..|...+..+|.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3334444444444444444455555555555555555555555555553
No 346
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=24.29 E-value=2.1e+02 Score=20.98 Aligned_cols=73 Identities=14% Similarity=0.022 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHh-------c------CCchhhhhHHHHHHHHHHHHhccCcc----------cHHHHHHHHHHHHH
Q 039398 4 KRHFVIGAQLLAQARS-------S------KSKSSASSLAKQAEAEADKAISFDYK----------DAAAHILKALALDL 60 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~~a~~~~~ 60 (172)
.-+|++|..++.-.+. . ....+....++..+..++.|+..-|. ...++..+|.++..
T Consensus 130 EA~flRA~~Yf~Lv~~fG~VPl~~~~~~~~~~R~s~~evy~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~ 209 (527)
T 3ckc_A 130 EIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLN 209 (527)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCccccCCCcCCHHHHHHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 4466777766665551 0 11244566688888888888775442 35577888888876
Q ss_pred h------CChhHHHHHHHHhhC
Q 039398 61 Q------GFKTSALESFDLALS 76 (172)
Q Consensus 61 ~------~~~~~A~~~~~~~l~ 76 (172)
. ++|++|+...++++.
T Consensus 210 ~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 210 AGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHT
T ss_pred hhhccCchhHHHHHHHHHHHHh
Confidence 4 899999999999985
No 347
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.10 E-value=1.6e+02 Score=19.58 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHccCHHHHHHHHHHHH
Q 039398 109 VDSAIDDLTEAVK-----IQDDNVK---ALCLLGECY-EVKKMRDEAKTAYESAL 154 (172)
Q Consensus 109 ~~~A~~~~~~~l~-----~~~~~~~---~~~~l~~~~-~~~~~~~~A~~~~~~al 154 (172)
.+.|...|+.+.. +.|.+|- ...+.+..| .-++++++|...-++++
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777754 4566653 334445444 44789998888777665
No 348
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.41 E-value=17 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHhhC
Q 039398 62 GFKTSALESFDLALS 76 (172)
Q Consensus 62 ~~~~~A~~~~~~~l~ 76 (172)
|+|++|+.+|..+++
T Consensus 25 g~~~eA~~~Y~~a~~ 39 (444)
T 2zan_A 25 GNYEEALQLYQHAVQ 39 (444)
T ss_dssp ---------------
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 349
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=23.02 E-value=2.4e+02 Score=21.03 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 039398 127 VKALCLLGECYEVKKMRDEAKTAYESALK 155 (172)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 155 (172)
..++..+|.++...+++++|....++++.
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35788899999999999999999999885
No 350
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.34 E-value=2.4e+02 Score=20.78 Aligned_cols=52 Identities=12% Similarity=-0.039 Sum_probs=36.9
Q ss_pred CchhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHHHHhh
Q 039398 22 SKSSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESFDLAL 75 (172)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 75 (172)
+.+....++.+|+..-++... ....-.+..+|-.+++.++|.+|+..+-.+-
T Consensus 279 grp~~~~Lf~~AI~~ar~~Y~--~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 279 GRPDPLTLYHKGIASAKTYYR--DEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp TSCCHHHHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcc--cCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 334455566777666554432 3345567788999999999999999998875
No 351
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.09 E-value=2.1e+02 Score=20.07 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCChhHHHHHH
Q 039398 24 SSASSLAKQAEAEADKAISFDYKDAAAHILKALALDLQGFKTSALESF 71 (172)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 71 (172)
+.......+|+.+-.+.-...-.+++.+..+|..+++.+++.+|..+|
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 345666777888777643334468999999999999999999999998
No 352
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.78 E-value=1.1e+02 Score=16.73 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHhccCcc
Q 039398 27 SSLAKQAEAEADKAISFDYK 46 (172)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~p~ 46 (172)
...+++|..++.+++..+..
T Consensus 10 k~~h~~AF~~Is~aL~~DE~ 29 (89)
T 3eab_A 10 RVFHKQAFEYISIALRIDED 29 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 33477777777777766543
No 353
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.37 E-value=89 Score=15.48 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCcccHH-HHHHHHHHHHHhCChhHHH
Q 039398 30 AKQAEAEADKAISFDYKDAA-AHILKALALDLQGFKTSAL 68 (172)
Q Consensus 30 ~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~ 68 (172)
.++|... ...+...+...+ +-..+...+.+.|+|++|+
T Consensus 22 H~EA~tI-A~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 22 HQEAASI-ADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHH-HHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 4444433 344555555444 4455677788899998875
No 354
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.73 E-value=22 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=32.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 039398 106 AGRVDSAIDDLTEAVKIQDDNVKALCLLGECYEVKKMRDE 145 (172)
Q Consensus 106 ~~~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (172)
.|+|.-|.+.++.++..+|++..+...++.++.++|.-.+
T Consensus 474 ~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 474 KGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3888889999998888899988888888888888875443
Done!