BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039400
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 5 PMLAIGPTVPSFYIDNGILNSNDYDLNRFTLDKSISINWLNQKPERSVIYIPFIGMA-CL 63
P+ A+GP + N L+ +DL + WL+++P++SV+++ F M
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDL---------ILKWLDEQPDKSVVFLCFGSMGVSF 290
Query: 64 GNKQVKELVWDLKKSSFYLLW 84
G Q++E+ LK S LW
Sbjct: 291 GPSQIREIALGLKHSGVRFLW 311
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 5 PMLAIGPTVPSFYIDNGILNSNDYDLNRFTLDKSISINWLNQKPERSVIYIPFIGMA-CL 63
P+ A+GP + N L+ +DL + WL+++P++SV+++ F M
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDL---------ILKWLDEQPDKSVVFLCFGSMGVSF 290
Query: 64 GNKQVKELVWDLKKSSFYLLW 84
G Q++E+ LK S LW
Sbjct: 291 GPSQIREIALGLKHSGVRFLW 311
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 36 DKSISINWLNQKPERSVIYIPFIGMACLGNKQVKELVWDLKKSSFYLLWIIR 87
++S + WL+ +P SV+Y+ F L +Q+ EL L S LW+IR
Sbjct: 254 EESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIR 305
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 98 DQPMDAKFVEDVWKVGVRVKVDEGGIVGRDEIERCIREVMEG 139
+Q M+A + + + +R + + G+V R+E+ R ++ +MEG
Sbjct: 388 EQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEG 429
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 41 INWLNQKPERSVIYIPFIGMACLGNKQVKELVWDLKKSSFYLLWIIR 87
++WL K SV+Y+ F + +Q+ E W L LWIIR
Sbjct: 286 LDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR 332
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 98 DQPMDAKFVEDVWKVGVRVKVDEGGIVGRDEIERCIREVMEG 139
DQP D +F+ + W++G+ + + V R+E+ + I EV+ G
Sbjct: 402 DQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAG 439
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 32.7 bits (73), Expect = 0.068, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 98 DQPMDAKFVEDVWKVGVRVKVDEGGIVGRDEIERCIREVM 137
DQ ++ + VEDV ++GVR+ EGG+ + + C +++
Sbjct: 374 DQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQIL 410
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 41 INWLNQKPERSVIYIPFIGMACLGNKQVKELVWDLKKSSFYLLWIIRD 88
+ WL ++ SV+YI F + +V L L+ S +W +RD
Sbjct: 262 LQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD 309
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 30.4 bits (67), Expect = 0.34, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 22 ILNSNDYDL---NRFTLDKSISINWLNQKPERSVIYIPFIGMACLGNKQVKELVWDLKKS 78
+LN ++L R D+ + WL+Q SV+YI F + ++ L L++
Sbjct: 242 LLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEEC 301
Query: 79 SFYLLWIIR 87
F +W R
Sbjct: 302 GFPFIWSFR 310
>pdb|3GYP|A Chain A, Rtt106p
Length = 261
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 16 FYIDN-------GILNSNDYDLNRFTLDKSISINWLNQKPER-SVIYIPFIGMACLGNKQ 67
FY+ N +L ND +L+ + L+K+I + PE+ ++IY+ +C NK
Sbjct: 34 FYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFMTYTSCEDNKF 93
Query: 68 VKELVWDLKK 77
+ +V L K
Sbjct: 94 SEPVVMTLNK 103
>pdb|3TO1|A Chain A, Two Surfaces On Rtt106 Mediate Histone Binding And
Chaperone Activity
pdb|3TO1|B Chain B, Two Surfaces On Rtt106 Mediate Histone Binding And
Chaperone Activity
Length = 235
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 16 FYIDN-------GILNSNDYDLNRFTLDKSISINWLNQKPER-SVIYIPFIGMACLGNKQ 67
FY+ N +L ND +L+ + L+K+I + PE+ ++IY+ +C NK
Sbjct: 28 FYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFMTYTSCEDNKF 87
Query: 68 VKELVWDLKK 77
+ +V L K
Sbjct: 88 SEPVVMTLNK 97
>pdb|1CT8|B Chain B, Catalytic Antibody 7c8 Complex
pdb|1CT8|D Chain D, Catalytic Antibody 7c8 Complex
Length = 220
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 33 FTLDKSISINWLNQKPERSVIYIPFI 58
FT S INWL QKP +S+ +I +I
Sbjct: 27 FTFSSSY-INWLKQKPGQSLEWIAWI 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,267,798
Number of Sequences: 62578
Number of extensions: 162000
Number of successful extensions: 520
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 16
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)