Query 039401
Match_columns 168
No_of_seqs 131 out of 314
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vx8_B Autophagy-related prote 100.0 2.8E-34 9.4E-39 242.8 7.4 100 60-167 169-268 (292)
2 2dyt_A Autophagy-related prote 100.0 1.4E-33 4.8E-38 240.6 7.8 102 59-167 165-294 (312)
3 4ebr_A Ubiquitin-like-conjugat 99.9 2.8E-29 9.5E-34 198.2 -2.0 101 57-168 57-158 (169)
4 3vx7_B E2; ubiquitin conjugati 99.9 3.2E-25 1.1E-29 172.1 1.5 96 57-168 43-141 (152)
5 2lpu_A Kmatg10; autophagy, E2- 99.7 2.3E-21 7.9E-26 149.4 0.0 96 58-168 44-141 (152)
6 1qtn_A Caspase-8; apoptosis, d 18.2 94 0.0032 23.2 3.2 39 84-138 113-153 (164)
7 1pyo_A Caspase-2; apoptosis, c 13.3 1.5E+02 0.005 22.2 3.2 38 84-137 117-156 (167)
8 3p45_A Caspase-6; protease, hu 11.1 1.7E+02 0.0059 22.3 3.0 43 84-143 127-171 (179)
9 2dko_A Caspase-3; low barrier 10.2 1.7E+02 0.0057 21.4 2.5 36 86-138 101-138 (146)
10 3gf6_A Uncharacterized bacteri 8.9 2.2E+02 0.0075 22.0 2.8 25 62-86 169-194 (224)
No 1
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-34 Score=242.77 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=89.4
Q ss_pred CCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCCCCCCCeEEEecCCchH
Q 039401 60 CDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPYLNRPWYKLHPCGTSE 139 (168)
Q Consensus 60 ~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP~l~~p~~~IHPC~Ta~ 139 (168)
.+.|+|++||+||++||||+|||+||+++|+||++++|+++++++++ .++||+++||+|+.|+++||||+||+
T Consensus 169 ~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~-------~ktVT~e~HP~l~~p~~siHPC~ha~ 241 (292)
T 3vx8_B 169 LRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHA-------RKTVTIEDHPHLPGKHASVHPCRHGA 241 (292)
T ss_dssp CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC-----------CEEEEECSSSSSEEEEECGGGHHH
T ss_pred cceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhh-------cceEEeecCCccCCceeEEecCCcHH
Confidence 35899999999999999999999999999999999999999988874 68999999999999999999999999
Q ss_pred HHHHhhcccccccCCcccccchhhhhcc
Q 039401 140 WMKLLFLGDTTQKKNGVAIELYLVAWFS 167 (168)
Q Consensus 140 ~m~~l~~~~~~~~~~~~~~~~YL~~WLs 167 (168)
+|+.++++. ..++.++++++||++||.
T Consensus 242 vMk~l~~~~-~~~~~~~~v~~YL~ifLk 268 (292)
T 3vx8_B 242 VMKKIIDVL-MSRGVEPEVDKYLFLFLK 268 (292)
T ss_dssp HHHHHHHHH-HHHTCCCCGGGHHHHHHH
T ss_pred HHHHHHHHH-HhcCCCcChhhHHHHHHH
Confidence 999999873 345667889999999996
No 2
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=240.61 Aligned_cols=102 Identities=25% Similarity=0.493 Sum_probs=90.5
Q ss_pred CCCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCCC--CCCCeEEEecCC
Q 039401 59 DCDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPY--LNRPWYKLHPCG 136 (168)
Q Consensus 59 ~~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP~--l~~p~~~IHPC~ 136 (168)
..+.++|+|||+||++||||||||+||+++|+||++++|+++++++++ +++||+++||+ +|.||++||||+
T Consensus 165 ~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~edi~~d~~-------~ktVT~e~HP~~~lg~p~~sIHPCk 237 (312)
T 2dyt_A 165 MAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYR-------TKTATIEKLPFYKNSVLSVSIHPCK 237 (312)
T ss_dssp CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHTTSCTTTH-------HHHEEEEECTTBSSCCEEEEECSCS
T ss_pred ccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHHHHHHhhc-------cCceecccCCCccCCCceEEEecCc
Confidence 467899999999999999999999999999999999999999988764 69999999999 999999999999
Q ss_pred chHHHHHhhccccc--------------------------ccCCcccccchhhhhcc
Q 039401 137 TSEWMKLLFLGDTT--------------------------QKKNGVAIELYLVAWFS 167 (168)
Q Consensus 137 Ta~~m~~l~~~~~~--------------------------~~~~~~~~~~YL~~WLs 167 (168)
|+++|+.++.+... +.+.++.+++||++||.
T Consensus 238 ta~vMk~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~irvd~YLviFLK 294 (312)
T 2dyt_A 238 HANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRVDQYLIVFLK 294 (312)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC--------CCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccccccccccccccccchhcccccCCCcCcchhHHHHHH
Confidence 99999999965331 24455789999999995
No 3
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-29 Score=198.20 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=71.7
Q ss_pred cCCCCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhCCcchhh-hhccCCeeeeeeecCCCCCCCeEEEecC
Q 039401 57 NYDCDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAK-ALSESKWTFITHEEHPYLNRPWYKLHPC 135 (168)
Q Consensus 57 ~~~~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~lp~~~~~-~l~~~~~~~IT~~~HP~l~~p~~~IHPC 135 (168)
..+.+.+++||||+||++||||+||||+|+.+|.++...... .+|..... ....+.++.+++.+||++|.|||+||||
T Consensus 57 ~~~~~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~Hp~~g~p~~~iHPC 135 (169)
T 4ebr_A 57 IENKLLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKL-MLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPC 135 (169)
T ss_dssp ----CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEE-CCHHHHHHHHTTTTCCCCSSEEEEEETTEEEEECCSS
T ss_pred CCcCcceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhh-cchHHHHHHhccccceEEEeccCCCCCCCceEEEcCc
Confidence 345678999999999999999999999999998764322110 01111111 1122456777889999999999999999
Q ss_pred CchHHHHHhhcccccccCCcccccchhhhhccC
Q 039401 136 GTSEWMKLLFLGDTTQKKNGVAIELYLVAWFSV 168 (168)
Q Consensus 136 ~Ta~~m~~l~~~~~~~~~~~~~~~~YL~~WLsv 168 (168)
+|+++|+... ...++||.+|||+
T Consensus 136 ~T~~~m~~~~----------~~~~~YL~~WlSl 158 (169)
T 4ebr_A 136 DTSCIVGDQA----------EFMSTYLRRWVSI 158 (169)
T ss_dssp CGGGSCCTTC----------TTGGGGHHHHHHH
T ss_pred CcHHHHhccc----------cchHhHHHHHHHH
Confidence 9999997532 2235899999985
No 4
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=99.90 E-value=3.2e-25 Score=172.13 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=75.3
Q ss_pred cCCCCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhC--Cc-chhhhhccCCeeeeeeecCCCCCCCeEEEe
Q 039401 57 NYDCDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGL--PS-CSAKALSESKWTFITHEEHPYLNRPWYKLH 133 (168)
Q Consensus 57 ~~~~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~l--p~-~~~~~l~~~~~~~IT~~~HP~l~~p~~~IH 133 (168)
.++++..++||||+||.+||||+||||+|..+ .+...++++.+ |. .....++.. +.+|++++||+++.|||.||
T Consensus 43 ~~~~~~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l~~~wy~IH 119 (152)
T 3vx7_B 43 VRLKTDTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEMKSVYYYIN 119 (152)
T ss_dssp EEEETTEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTSSSEEEEEC
T ss_pred ccCCCceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeeccccCCceEEEc
Confidence 35567899999999999999999999999977 33333343333 32 223344555 78999999999999999999
Q ss_pred cCCchHHHHHhhcccccccCCcccccchhhhhccC
Q 039401 134 PCGTSEWMKLLFLGDTTQKKNGVAIELYLVAWFSV 168 (168)
Q Consensus 134 PC~Ta~~m~~l~~~~~~~~~~~~~~~~YL~~WLsv 168 (168)
||+|+++|+... .+||.+|+|+
T Consensus 120 PCdT~eivg~~~-------------~nYL~rW~Sv 141 (152)
T 3vx7_B 120 NCDTDANVGSDV-------------EHYLTRWISL 141 (152)
T ss_dssp CTTHHHHHCSCS-------------TTHHHHHHHH
T ss_pred CccHHHHhccch-------------hhHHHHHHHH
Confidence 999999998532 4999999985
No 5
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=99.69 E-value=2.3e-21 Score=149.41 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=75.0
Q ss_pred CCCCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhCCcc--hhhhhccCCeeeeeeecCCCCCCCeEEEecC
Q 039401 58 YDCDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSC--SAKALSESKWTFITHEEHPYLNRPWYKLHPC 135 (168)
Q Consensus 58 ~~~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~lp~~--~~~~l~~~~~~~IT~~~HP~l~~p~~~IHPC 135 (168)
+.....++|++|+||++||||+|+||.|+.++ .-+.+.+.-.+|.+ .+..+..+. ..|++..||..+.+||+||||
T Consensus 44 ~~~~~~~iE~~I~Y~~~YqVP~L~fRlwe~~~-~~~i~~~~l~fp~~~~~~~iL~i~~-fsi~Ld~~~~~~s~Wy~IHpC 121 (152)
T 2lpu_A 44 RLKTDTLLELHIYYDHVYHVPSIKFRLWSLDT-EEDISSLRLLTLSDSELRSILNLGT-FSVTLSTDMEMKSVYYYINNC 121 (152)
Confidence 45678899999999999999999999999886 32344333334554 234444444 568999999999999999999
Q ss_pred CchHHHHHhhcccccccCCcccccchhhhhccC
Q 039401 136 GTSEWMKLLFLGDTTQKKNGVAIELYLVAWFSV 168 (168)
Q Consensus 136 ~Ta~~m~~l~~~~~~~~~~~~~~~~YL~~WLsv 168 (168)
+|+++|+.. .+.||.+|+|+
T Consensus 122 dTs~iVg~~-------------~~~YL~rW~Sv 141 (152)
T 2lpu_A 122 DTDANVGSD-------------VEHYLTRWISL 141 (152)
Confidence 999999862 34999999996
No 6
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=18.25 E-value=94 Score=23.22 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=27.4
Q ss_pred EecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCC-CCCCC-eEEEecCCch
Q 039401 84 AYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHP-YLNRP-WYKLHPCGTS 138 (168)
Q Consensus 84 ~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP-~l~~p-~~~IHPC~Ta 138 (168)
.|..||.++.+++|++.+... ..| +.|.| .|+|--|+-.
T Consensus 113 i~g~D~~~v~i~~i~~~F~~~----------------~CpsL~gKPKlFfiQACRG~ 153 (164)
T 1qtn_A 113 IYGTDGQEAPIYELTSQFTGL----------------KCPSLAGKPKVFFIQACQGD 153 (164)
T ss_dssp EECTTSCEEEHHHHHGGGSTT----------------TCGGGTTSCEEEEEESCSSS
T ss_pred EEeeCCCEeeHHHHHHHhccc----------------cChhhcCCCeEEEEECCCCC
Confidence 345677889999999877432 133 34777 8999999753
No 7
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=13.30 E-value=1.5e+02 Score=22.20 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=26.4
Q ss_pred EecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCC-CCCCC-eEEEecCCc
Q 039401 84 AYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHP-YLNRP-WYKLHPCGT 137 (168)
Q Consensus 84 ~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP-~l~~p-~~~IHPC~T 137 (168)
.|..||.++.+++|++.+.... .| +.|.| .|+|--|+-
T Consensus 117 i~g~D~~~v~l~~i~~~F~~~~----------------CpsL~gKPKlffiQACRG 156 (167)
T 1pyo_A 117 IYGVDGKLLQLQEVFQLFDNAN----------------CPSLQNKPKMFFIQACRG 156 (167)
T ss_dssp EECTTSCEEEHHHHHHHTSTTT----------------CGGGTTSCEEEEEESCSS
T ss_pred EEEeCCCEEcHHHHHHHhcccC----------------ChhHcCCCeEEEEECCCC
Confidence 3455778899999998874321 22 23677 899999974
No 8
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=11.14 E-value=1.7e+02 Score=22.29 Aligned_cols=43 Identities=7% Similarity=0.227 Sum_probs=24.3
Q ss_pred EecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCC-CCCCC-eEEEecCCchHHHHH
Q 039401 84 AYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHP-YLNRP-WYKLHPCGTSEWMKL 143 (168)
Q Consensus 84 ~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP-~l~~p-~~~IHPC~Ta~~m~~ 143 (168)
+|..||. +.+++|++.+... .+| +.|.| .|+|--|+-.+.-..
T Consensus 127 I~g~D~~-v~l~~I~~~F~~~----------------~CpsL~gKPKlFfIQACRG~~~d~G 171 (179)
T 3p45_A 127 IYAYDAK-IEIQTLTGLFKGD----------------KCHSLVGKPKIFIIQACRGNQHDVP 171 (179)
T ss_dssp EECSSSE-EEHHHHHGGGSGG----------------GCGGGTTSCEEEEEECC--------
T ss_pred EEEECCE-EEHHHHHHhcccc----------------cChhhCCCCcEEEEECCCCCCCCCC
Confidence 3445666 9999999887432 123 34777 899999997665543
No 9
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=10.17 E-value=1.7e+02 Score=21.36 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=24.5
Q ss_pred cCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCC-CCCCC-eEEEecCCch
Q 039401 86 CSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHP-YLNRP-WYKLHPCGTS 138 (168)
Q Consensus 86 ~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP-~l~~p-~~~IHPC~Ta 138 (168)
-.|| ++.+++|++.+... ..| +.|.| .|+|--|+-.
T Consensus 101 g~D~-~~~l~~i~~~F~~~----------------~CpsL~gKPKlffiQACRG~ 138 (146)
T 2dko_A 101 GTNG-PVDLKKITNFFRGD----------------RCRSLTGKPKLFIIQACRGT 138 (146)
T ss_dssp ETTE-EEEHHHHHHTTSTT----------------TCGGGTTSCEEEEEESCCSS
T ss_pred EeCC-cEeHHHHHHHhccc----------------cChhhcCCCeEEEEECCCCC
Confidence 3455 78999999877432 123 24677 8999999743
No 10
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Probab=8.94 E-value=2.2e+02 Score=22.00 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=18.9
Q ss_pred eEEEEEEEEEeCC-CCCeEEEEEEec
Q 039401 62 KHYYDFHVIYNAS-YRVPVLYFRAYC 86 (168)
Q Consensus 62 ~~~~e~~I~YS~s-YqVPvLyf~~~~ 86 (168)
.++..|.|+|+.+ -.--+|||+.+-
T Consensus 169 rrtwtfditydrs~lsfsqlyfnlf~ 194 (224)
T 3gf6_A 169 RRTCTFDITYDRSDLSFSQLYFNLFI 194 (224)
T ss_dssp SSEEEEEEEEEEEEECCSEEEEEEEE
T ss_pred heeeEEEEEecccCCcHHHHHHHHHH
Confidence 4788999999875 345689998763
Done!