Query 039401
Match_columns 168
No_of_seqs 131 out of 314
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 15:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyxa1 d.58.57.1 (A:1-130) Pu 16.8 30 0.0022 23.2 1.9 21 60-80 6-26 (130)
2 d2f5ga1 d.58.57.1 (A:2-131) Pu 15.9 28 0.002 23.4 1.5 22 59-80 6-27 (130)
3 d1zv9a1 b.2.2.2 (A:3-173) Cell 13.6 1.1E+02 0.0077 21.8 4.2 55 59-125 29-83 (171)
4 d2vjva1 d.58.57.1 (A:6-130) IS 12.7 37 0.0027 22.5 1.4 22 59-80 6-27 (125)
5 d1nh8a2 d.58.5.3 (A:211-284) A 8.2 1.4E+02 0.01 18.0 2.9 43 93-147 13-55 (74)
6 d1qcrd2 a.3.1.3 (D:167-195) Cy 7.9 82 0.006 16.0 1.3 16 87-102 6-21 (29)
7 d1wjka_ c.47.1.1 (A:) Thioredo 7.6 49 0.0036 20.6 0.4 27 75-101 65-91 (100)
8 d1ckqa_ c.52.1.1 (A:) Restrict 7.6 79 0.0057 23.9 1.6 25 75-102 216-240 (261)
9 d1ttza_ c.47.1.1 (A:) Hypothet 7.2 38 0.0028 20.5 -0.3 28 74-101 44-71 (75)
10 d1d8ja_ a.4.5.18 (A:) The cent 6.5 1.1E+02 0.0077 19.2 1.6 13 88-100 28-40 (81)
No 1
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.84 E-value=30 Score=23.17 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.5
Q ss_pred CCeEEEEEEEEEeCCCCCeEE
Q 039401 60 CDKHYYDFHVIYNASYRVPVL 80 (168)
Q Consensus 60 ~~~~~~e~~I~YS~sYqVPvL 80 (168)
.....+.|||++.+-|+-|+|
T Consensus 6 h~v~~l~yHlVf~tKyR~~vl 26 (130)
T d2fyxa1 6 GYVYKLEYHLIWATKYRHQVL 26 (130)
T ss_dssp TEEEEEEEEEEEECGGGCCCC
T ss_pred ceEEeeeEEEEEcccCchhhc
Confidence 346778999999999999998
No 2
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.90 E-value=28 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.8
Q ss_pred CCCeEEEEEEEEEeCCCCCeEE
Q 039401 59 DCDKHYYDFHVIYNASYRVPVL 80 (168)
Q Consensus 59 ~~~~~~~e~~I~YS~sYqVPvL 80 (168)
+.....+.||+++.+-|+-|+|
T Consensus 6 ~H~~~~l~yHlV~~~KyR~~vl 27 (130)
T d2f5ga1 6 RHTKYLCNYHFVWIPKHRRNTL 27 (130)
T ss_dssp TTEEEECEEEEEECBSSCTTCS
T ss_pred CceeEeeeeEEEEcccccchhc
Confidence 3456678999999999999998
No 3
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=13.57 E-value=1.1e+02 Score=21.78 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.9
Q ss_pred CCCeEEEEEEEEEeCCCCCeEEEEEEecCCCCCCCHHHHHhhCCcchhhhhccCCeeeeeeecCCCC
Q 039401 59 DCDKHYYDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPYL 125 (168)
Q Consensus 59 ~~~~~~~e~~I~YS~sYqVPvLyf~~~~~~g~pL~leei~~~lp~~~~~~l~~~~~~~IT~~~HP~l 125 (168)
-.+.-=|+..|-|+|.+-.|| +++|.|.+-. .+|. +..+| ...+.-+.+..|-+-
T Consensus 29 i~nfAGYQvNIKYDP~vLQ~V------~~tG~~y~~~----t~P~-~G~lL-n~~Y~pt~~a~nd~~ 83 (171)
T d1zv9a1 29 ITNFSGCQLNMKYDPAVLQPV------TSSGVAYTKS----TMPG-AGTIL-NSDFNLRQVADNDLE 83 (171)
T ss_dssp CTTEEEEEEEEECCTTTEEEE------CTTSCBCCTT----CCCB-CCSSS-CSSSCEEEEECCBTT
T ss_pred CCccceeEEEeeeChHHeecc------CCCCCccccc----cCCC-Cccee-ccccCccchhhcccc
Confidence 356788999999999987776 3488887765 4554 44555 445666667666654
No 4
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=12.73 E-value=37 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.7
Q ss_pred CCCeEEEEEEEEEeCCCCCeEE
Q 039401 59 DCDKHYYDFHVIYNASYRVPVL 80 (168)
Q Consensus 59 ~~~~~~~e~~I~YS~sYqVPvL 80 (168)
......+.|||++.+-|+-|+|
T Consensus 6 ~H~v~~~~yH~V~~~KyR~~vl 27 (125)
T d2vjva1 6 HNVVYSCKYHIVWCPKYRRKVL 27 (125)
T ss_dssp SSEEEECEEEEEECBGGGCCCC
T ss_pred CceEEEeeeEEEEccccchhhc
Confidence 3446778999999999999998
No 5
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.17 E-value=1.4e+02 Score=18.05 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=30.7
Q ss_pred CHHHHHhhCCcchhhhhccCCeeeeeeecCCCCCCCeEEEecCCchHHHHHhhcc
Q 039401 93 VLDEIEKGLPSCSAKALSESKWTFITHEEHPYLNRPWYKLHPCGTSEWMKLLFLG 147 (168)
Q Consensus 93 ~leei~~~lp~~~~~~l~~~~~~~IT~~~HP~l~~p~~~IHPC~Ta~~m~~l~~~ 147 (168)
.++++.+.+|.- ..+||+. +-+.-|+.||-.=....+..++..
T Consensus 13 ~L~~v~~ilPg~--------~~PTVs~----L~~~~wvAV~~vv~e~~v~~~i~~ 55 (74)
T d1nh8a2 13 ALKKATAITPGL--------ESPTIAP----LADPDWVAIRALVPRRDVNGIMDE 55 (74)
T ss_dssp GHHHHHHHCCCS--------SSCEEEE----CSSTTEEEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHhCCCC--------CCCcccc----ccCCCEEEEEEEEeHHHHHHHHHH
Confidence 478888888864 3577774 557779999987666666666544
No 6
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.94 E-value=82 Score=15.97 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHhhCC
Q 039401 87 SGGQPLVLDEIEKGLP 102 (168)
Q Consensus 87 ~~g~pL~leei~~~lp 102 (168)
.||.|-+++++-+++.
T Consensus 6 ~DGt~at~~q~a~DV~ 21 (29)
T d1qcrd2 6 DDGTPATMSQVAKDVC 21 (29)
T ss_pred CCCCcCcHHHHHHHHH
Confidence 4899999999988863
No 7
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.64 E-value=49 Score=20.58 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=14.9
Q ss_pred CCCeEEEEEEecCCCCCCCHHHHHhhC
Q 039401 75 YRVPVLYFRAYCSGGQPLVLDEIEKGL 101 (168)
Q Consensus 75 YqVPvLyf~~~~~~g~pL~leei~~~l 101 (168)
++||+|++.|-....-+++.+++.+.|
T Consensus 65 ~~VPvl~idg~~~~~g~~d~~~L~~~L 91 (100)
T d1wjka_ 65 FDIPVFHLNGQFLMMHRVNTSKLEKQL 91 (100)
T ss_dssp SSCSEEEESSSEEEESSCCHHHHHHHH
T ss_pred ccCCceeecCceEEeCCCCHHHHHHHH
Confidence 469999874422112256666665544
No 8
>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia coli [TaxId: 562]}
Probab=7.57 E-value=79 Score=23.89 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=21.3
Q ss_pred CCCeEEEEEEecCCCCCCCHHHHHhhCC
Q 039401 75 YRVPVLYFRAYCSGGQPLVLDEIEKGLP 102 (168)
Q Consensus 75 YqVPvLyf~~~~~~g~pL~leei~~~lp 102 (168)
+|.+-|||++ +|.|.+.+||+..+-
T Consensus 216 lQ~aSiY~q~---e~~pWt~~eMfdiM~ 240 (261)
T d1ckqa_ 216 LQAASIYTQG---DGREWDSKIMFEIMF 240 (261)
T ss_dssp ECCCEEEECT---TSSCCCHHHHHHHHH
T ss_pred eeeeeEEEec---CCCCCcHHHHHHHHH
Confidence 7999999986 678999999998763
No 9
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=7.17 E-value=38 Score=20.47 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=16.8
Q ss_pred CCCCeEEEEEEecCCCCCCCHHHHHhhC
Q 039401 74 SYRVPVLYFRAYCSGGQPLVLDEIEKGL 101 (168)
Q Consensus 74 sYqVPvLyf~~~~~~g~pL~leei~~~l 101 (168)
-++||||...+-..-+-|++.+++.+.|
T Consensus 44 ~~~IPVl~~~~~~~l~w~fd~~~l~~~L 71 (75)
T d1ttza_ 44 GLRVPVLRDPMGRELDWPFDAPRLRAWL 71 (75)
T ss_dssp TTTCSEEECTTCCEEESCCCHHHHHHHH
T ss_pred CCeeeEEEECCeeEEcCccCHHHHHHHH
Confidence 3679999643212223477877777654
No 10
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=1.1e+02 Score=19.15 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHhh
Q 039401 88 GGQPLVLDEIEKG 100 (168)
Q Consensus 88 ~g~pL~leei~~~ 100 (168)
+..||++|||...
T Consensus 28 ~~hPLtLeEiLDE 40 (81)
T d1d8ja_ 28 DTHPLTLDEILDE 40 (81)
T ss_dssp CCSCBCHHHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 3469999999875
Done!