BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039402
(1496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 150/226 (66%), Gaps = 3/226 (1%)
Query: 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
++ + + F+W S PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 676 TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ + G+ AYV Q WIQ+ + +NILFG ++ Y +V+ AC+L DLEIL GD+T
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL--LGLLSSK 793
IGE+G+NLSGGQKQR+ +ARA+Y ++DIYLFDDP SAVDAH G H+F+ V+ G+L +K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 794 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
T I VTH + +LP D+I+VM GKI++ G Y +L+ F E +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 23/230 (10%)
Query: 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
P L GI+ + P G +VG+ G GKS+L+ L ++
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-------------KVEGHVAI 64
Query: 1320 RSRLSIIPQDPVMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
+ ++ +PQ + ++R N+ LEE + +A C L ++ +++
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA---CALLPDLEILPSGDRTEI 121
Query: 1377 TENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL---RQHFSDCT 1433
E G N S GQ+Q V L R + + I + D+ ++VD I + + + + T
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 1434 VLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483
+ + H ++ + D++++++ G I E + LL + +F++ + Y
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYA 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 215/925 (23%), Positives = 406/925 (43%), Gaps = 109/925 (11%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+F++ P L+ +NL+V G VA+ G+ G GKS+++S +L + G + + G
Sbjct: 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILS 729
A V+Q P + + IE+NI GKE + RE A + +K ++ L
Sbjct: 482 VRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLP 541
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G T++G+RG LSGGQKQRI IARAL ++ I L D+ SA+DA + + Q+ L
Sbjct: 542 NGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQALDKA 600
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQALLAL 849
+T I + H++ + ADLI+ K+G++ + G + L+ + +LV A
Sbjct: 601 AKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVD 660
Query: 850 GSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEV-------------AVSKG 896
+ EG+ + E N + ++ ++G + +A E+ +++ G
Sbjct: 661 SAAEGKFSRE------------NSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNG 708
Query: 897 QLVQEEEREKGKVGFSVYWKYITTAFGGALVPFILL------AQTLFQILQIASNYWIVW 950
++ E+E GK S + + F +L A +LF + A+ ++
Sbjct: 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIY 768
Query: 951 ATPGT-----------KDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATL 999
T + G ++++ LA C + + A
Sbjct: 769 PTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRD 828
Query: 1000 LFNEMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTI 1057
L N++ + + FFD+ SG+I R +TD +P+L A F ++ T+
Sbjct: 829 LRNKLFRNVLSQHIGFFDSPQNASGKISTRLATD-------VPNLRTAIDFRFSTVITTL 881
Query: 1058 AVMSQ-------VAWQV---FIVFVP--AVGSCIWYQQYYISSARELSRLVGVCKAPVIQ 1105
M WQ+ I +P A G + +++ + + S K +
Sbjct: 882 VSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAI-- 939
Query: 1106 HFAETVSGSTTIRSFDQESRFRDRNMKLMD----EYSRPTFHIAAAMEWLGLRLDMLSSI 1161
E + T+++ +E F + + +D E + F + L +L++
Sbjct: 940 ---EAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTC 996
Query: 1162 TFAFTLVFLISIPKGFIDPAIAGLAVTYGLTLNT-LLATLIWFACDLENKIISVERIF-- 1218
+ L +I+ P + L V Y +T++T L + + + IF
Sbjct: 997 AYRMGLALIITDPPTMQPMRV--LRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGM 1054
Query: 1219 --QYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMP--LVLQGISCTFPGGE 1274
+ + I S LA E+ + +GK+ +++ Y P+ P +L+G+S + G+
Sbjct: 1055 LRKISKIDS-LSLAGEKKKL------YGKVIFKNVRFAY-PERPEIEILKGLSFSVEPGQ 1106
Query: 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFE 1334
+VG +G GKST++ L R + RS+++I+ Q+P +F+
Sbjct: 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 1335 GTVRSN----LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390
++ N LDP T Q+ EA + + + + +++V + G S GQ+Q
Sbjct: 1167 CSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225
Query: 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV 1450
+ + R L++ KIL+LDEAT+++DT ++ ++Q+ L + T + IAHR+ +V+++D +
Sbjct: 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCI 1285
Query: 1451 LLLNHGLIEEFDNPANLLENKSSSF 1475
++++G I E L+ K + +
Sbjct: 1286 AVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 142/647 (21%), Positives = 265/647 (40%), Gaps = 62/647 (9%)
Query: 875 VKEVENNKGQN-DKADEVAVSKGQLVQEEEREKGKVGFSVYWKYITTA-----FGGALVP 928
+K VE+ +G N D E+ +++ +E KV ++Y TT F G LV
Sbjct: 29 IKTVEDYEGDNIDSNGEIKITR----DAKEEVVNKVSIPQLYRYTTTLEKLLLFIGTLVA 84
Query: 929 FILLAQ-TLFQILQ------------IASNYWIVWATPGTKDVKPVVTGSTLLIV--YVA 973
I A L ILQ + +N + G K + +V Y A
Sbjct: 85 VITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAA 144
Query: 974 LAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQS 1033
+ VG T + L E I R +S+FD SG + + +
Sbjct: 145 MTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLE 204
Query: 1034 AADLGIPSLVG-AYAFSIIRILGTIAVMSQVAWQVFIVFV---PAVGSCIWYQQYYISS- 1088
G +G A+ + I G I + +WQ+ +V + P C + +S+
Sbjct: 205 RVKEGTGDKIGMAFQYLSQFITGFIVAFTH-SWQLTLVMLAVTPIQALCGFAIAKSMSTF 263
Query: 1089 -ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAA 1147
RE R K V++ ET+S T+ S + +R ++E + A
Sbjct: 264 AIRETLRYAKAGK--VVE---ETISSIRTVVSLNGLRYELERYSTAVEEAKK-----AGV 313
Query: 1148 ME--WLGLRLDMLSSITF-AFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIW-F 1203
++ +LG+ + + F +F L F I + G++ ++ +G L T + ++
Sbjct: 314 LKGLFLGISFGAMQASNFISFALAFYIGV--GWVHDG----SLNFGDMLTTFSSVMMGSM 367
Query: 1204 ACDLENKIISVERIFQ------YTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYA- 1256
A L ++V Q Y + +P + G I + ++ Y
Sbjct: 368 ALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPS 427
Query: 1257 -PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXX 1315
P +P +L+G++ G+ +VG +G GKST+I L R +
Sbjct: 428 RPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN 486
Query: 1316 XXXXRSRLSIIPQDPVMFEGTVRSNLDPLEES-TDEQIWEALDKCQLGDEVRKKEGKLDS 1374
R ++++ Q+P +F T+ N+ +E T E++ A ++ ++
Sbjct: 487 LEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546
Query: 1375 KVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434
V + G S GQ+Q + + R L++ KIL+LDEAT+++D ++ ++QQ L + T
Sbjct: 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTT 606
Query: 1435 LTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
+ IAHR++++ ++DL++ +G + E + L+ + + + A+
Sbjct: 607 IIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
LK ++ V G +A+ G G GKS++++ + + G + + G++
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 684 -AYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL---KKDLEILSFGDQTVIGER 739
A V+Q P + I +NI++G + + V +A L + L G +T +G+R
Sbjct: 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 740 GINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
G LSGGQKQRI IARAL ++ I L D+ SA+D + + QE L +T I +
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EKVVQEALDRAREGRTCIVIA 1273
Query: 800 HQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
H++ + AD I V+ +G I + G + L++ + +L
Sbjct: 1274 HRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 251/1117 (22%), Positives = 473/1117 (42%), Gaps = 131/1117 (11%)
Query: 451 TVIVMLVNIPLG-------RVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFL 503
T++++ ++ LG ++ +F DK + + + E+L +R + G + K L
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 504 SKIIN-LRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF------GTCILLNVPLESG 556
+ N L + + +KK AI++ + GA + A++ GT ++++ G
Sbjct: 271 ERYNNNLEEAKRLGIKK-----AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIG 325
Query: 557 KMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSS-- 614
++L+ + + + I + + + F + D +P + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV---FKIIDNKPSIDSFSKSGHKPD 382
Query: 615 --ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
+ L+ + +FS+ LK +NLKV G VA+ G G GKS+ + +
Sbjct: 383 NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 673 ISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLD 717
+ G + + G V+Q P + + I +NI +G+E E AV +
Sbjct: 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKE 502
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
A + +++ D T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D +
Sbjct: 503 ANAYDFIMKLPHQFD-TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837
+ + Q L +T I + H++ + AD+I G I + G +++L+ + +
Sbjct: 562 EA-VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 838 LVGAHEQA-LLALGSIEGRPASE-----RASGENGGTVIANRIVKEVENNKGQNDKADEV 891
LV + LG+ + E +S ++G ++I R ++ D+
Sbjct: 621 LVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDR---- 676
Query: 892 AVSKGQLVQEEEREKG-----KVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNY 946
+S + + E+ K+ S W Y A++ L Q F + I S
Sbjct: 677 KLSTKEALDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGL--QPAFSV--IFSKV 731
Query: 947 WIVWATPGTKDVKPVVTGSTLL-IVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMH 1005
V+ G + + S L ++++ L + S + AG +L +
Sbjct: 732 VGVFTNGGPPETQR--QNSNLFSLLFLILGIISFITFFLQGFTFGKAG----EILTKRLR 785
Query: 1006 YCIF----RAPMSFFD--ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAV 1059
Y +F R +S+FD +G + R + D + S + A F I LGT +
Sbjct: 786 YMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL-AVIFQNIANLGTGII 844
Query: 1060 MSQV-AWQ---VFIVFVP--AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSG 1113
+S + WQ + + VP A+ + + + ++ L G K E +
Sbjct: 845 ISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT-----EAIEN 899
Query: 1114 STTIRSFDQESRFRD----------RNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF 1163
T+ S +E +F RN TF AM + + F
Sbjct: 900 FRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY------AAAF 953
Query: 1164 AFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCI 1223
F + F + + A+ +G + + FA D +S I +
Sbjct: 954 RFGAYLVTQQLMTFENVLLVFSAIVFGA---MAVGQVSSFAPDYAKATVSASHIIRI--- 1007
Query: 1224 PSEPPLAIEESRPNDSWPSHG-KIDLLDLQVRYA---------PQMPLVLQGISCTFPGG 1273
IE++ DS+ + G K ++L+ V+++ P +P VLQG+S G
Sbjct: 1008 -------IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKG 1059
Query: 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMF 1333
+ +VG +G GKST++Q L R +P A R++L I+ Q+P++F
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 1334 EGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390
+ ++ N+ D + E+I A + + + K +++V + G S GQ+Q
Sbjct: 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179
Query: 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV 1450
+ + R L+++ IL+LDEAT+++DT ++ ++Q+ L + T + IAHR++++ ++DL+
Sbjct: 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLI 1239
Query: 1451 LLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSS 1487
+++ +G ++E LL K FS + + + S
Sbjct: 1240 VVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 216/498 (43%), Gaps = 55/498 (11%)
Query: 1006 YCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAW 1065
+ I + +FD G + R + D S + GI +G + ++ G + W
Sbjct: 149 HAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 1066 QVFIVFV---PAVG--SCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSF 1120
++ +V + P +G + IW + I S+ L KA + E ++ T+ +F
Sbjct: 209 KLTLVILAISPVLGLSAGIWAK---ILSSFTDKELHAYAKAGAVAE--EVLAAIRTVIAF 263
Query: 1121 DQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF--AFTLVFLISIPKGFI 1178
+ + +R ++E R LG++ + ++I+ AF L++
Sbjct: 264 GGQKKELERYNNNLEEAKR-----------LGIKKAITANISMGAAFLLIY--------- 303
Query: 1179 DPAIAGLAVTYGLTLN-----------TLLATLIWFACDLENKIISVERIFQYTCIPSEP 1227
A LA YG +L T+ +++ A + ++E E
Sbjct: 304 --ASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 1228 PLAIEESRPNDSWPS--------HGKIDLLDLQVRYAPQMPL-VLQGISCTFPGGEKTGI 1278
I+ DS+ G ++ ++ Y + + +L+G++ G+ +
Sbjct: 362 FKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVAL 421
Query: 1279 VGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVR 1338
VG +G GKST +Q + R+ +P R + ++ Q+PV+F T+
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
Query: 1339 SNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397
N+ E+ T ++I +A+ + D + K + D+ V E G S GQ+Q + + R L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457
++ KIL+LDEAT+++DT ++ ++Q L + T + IAHR+++V ++D++ + G+
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Query: 1458 IEEFDNPANLLENKSSSF 1475
I E N L+ K F
Sbjct: 602 IVEQGNHDELMREKGIYF 619
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 251/1117 (22%), Positives = 473/1117 (42%), Gaps = 131/1117 (11%)
Query: 451 TVIVMLVNIPLG-------RVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFL 503
T++++ ++ LG ++ +F DK + + + E+L +R + G + K L
Sbjct: 211 TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270
Query: 504 SKIIN-LRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATF------GTCILLNVPLESG 556
+ N L + + +KK AI++ + GA + A++ GT ++++ G
Sbjct: 271 ERYNNNLEEAKRLGIKK-----AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIG 325
Query: 557 KMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSS-- 614
++L+ + + + I + + + F + D +P + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV---FKIIDNKPSIDSFSKSGHKPD 382
Query: 615 --ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 672
+ L+ + +FS+ LK +NLKV G VA+ G G GKS+ + +
Sbjct: 383 NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 673 ISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNAVLD 717
+ G + + G V+Q P + + I +NI +G+E E AV +
Sbjct: 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKE 502
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
A + +++ D T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D +
Sbjct: 503 ANAYDFIMKLPHQFD-TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837
+ + Q L +T I + H++ + AD+I G I + G +++L+ + +
Sbjct: 562 EA-VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 838 LVGAHEQA-LLALGSIEGRPASE-----RASGENGGTVIANRIVKEVENNKGQNDKADEV 891
LV + LG+ + E +S ++G ++I R ++ D+
Sbjct: 621 LVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDR---- 676
Query: 892 AVSKGQLVQEEEREKG-----KVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNY 946
+S + + E+ K+ S W Y A++ L Q F + I S
Sbjct: 677 KLSTKEALDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGL--QPAFSV--IFSKV 731
Query: 947 WIVWATPGTKDVKPVVTGSTLL-IVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMH 1005
V+ G + + S L ++++ L + S + AG +L +
Sbjct: 732 VGVFTNGGPPETQR--QNSNLFSLLFLILGIISFITFFLQGFTFGKAG----EILTKRLR 785
Query: 1006 YCIF----RAPMSFFD--ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAV 1059
Y +F R +S+FD +G + R + D + S + A F I LGT +
Sbjct: 786 YMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL-AVIFQNIANLGTGII 844
Query: 1060 MSQV-AWQ---VFIVFVP--AVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSG 1113
+S + WQ + + VP A+ + + + ++ L G K E +
Sbjct: 845 ISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT-----EAIEN 899
Query: 1114 STTIRSFDQESRFRD----------RNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF 1163
T+ S +E +F RN TF AM + + F
Sbjct: 900 FRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY------AACF 953
Query: 1164 AFTLVFLISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCI 1223
F + F + + A+ +G + + FA D +S I +
Sbjct: 954 RFGAYLVTQQLMTFENVLLVFSAIVFGA---MAVGQVSSFAPDYAKATVSASHIIRI--- 1007
Query: 1224 PSEPPLAIEESRPNDSWPSHG-KIDLLDLQVRYA---------PQMPLVLQGISCTFPGG 1273
IE++ DS+ + G K ++L+ V+++ P +P VLQG+S G
Sbjct: 1008 -------IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKG 1059
Query: 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMF 1333
+ +VG +G GKST++Q L R +P A R++L I+ Q+P++F
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 1334 EGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390
+ ++ N+ D + E+I A + + + K +++V + G S GQ+Q
Sbjct: 1120 DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179
Query: 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV 1450
+ + R L+++ IL+LDEAT+++DT ++ ++Q+ L + T + IAHR++++ ++DL+
Sbjct: 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLI 1239
Query: 1451 LLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSS 1487
+++ +G ++E LL K FS + + + S
Sbjct: 1240 VVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 216/498 (43%), Gaps = 55/498 (11%)
Query: 1006 YCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAW 1065
+ I + +FD G + R + D S + GI +G + ++ G + W
Sbjct: 149 HAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 1066 QVFIVFV---PAVG--SCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSF 1120
++ +V + P +G + IW + I S+ L KA + E ++ T+ +F
Sbjct: 209 KLTLVILAISPVLGLSAGIWAK---ILSSFTDKELHAYAKAGAVAE--EVLAAIRTVIAF 263
Query: 1121 DQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITF--AFTLVFLISIPKGFI 1178
+ + +R ++E R LG++ + ++I+ AF L++
Sbjct: 264 GGQKKELERYNNNLEEAKR-----------LGIKKAITANISMGAAFLLIY--------- 303
Query: 1179 DPAIAGLAVTYGLTLN-----------TLLATLIWFACDLENKIISVERIFQYTCIPSEP 1227
A LA YG +L T+ +++ A + ++E E
Sbjct: 304 --ASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 1228 PLAIEESRPNDSWPS--------HGKIDLLDLQVRYAPQMPL-VLQGISCTFPGGEKTGI 1278
I+ DS+ G ++ ++ Y + + +L+G++ G+ +
Sbjct: 362 FKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVAL 421
Query: 1279 VGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVR 1338
VG +G GKST +Q + R+ +P R + ++ Q+PV+F T+
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
Query: 1339 SNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397
N+ E+ T ++I +A+ + D + K + D+ V E G S GQ+Q + + R L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGL 1457
++ KIL+LDEAT+++DT ++ ++Q L + T + IAHR+++V ++D++ + G+
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Query: 1458 IEEFDNPANLLENKSSSF 1475
I E N L+ K F
Sbjct: 602 IVEQGNHDELMREKGIYF 619
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 143/234 (61%), Gaps = 2/234 (0%)
Query: 604 DLVEK--QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+L+EK Q +G + + D + +FS NP LK+INL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LL ILGE+ G +K G ++ +Q WI G I++NI+FG + RY +V+ AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 139
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
F+ + L+++KT I VT ++E L AD IL++ G G +++L + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ GE I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE ++++ K CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T + + + + + ++ T + +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 142/234 (60%), Gaps = 2/234 (0%)
Query: 604 DLVEK--QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+L+EK Q +G + D + +FS NP LK+INL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LL ILGE+ G +K G ++ +Q WI G I++NI+FG + RY +V+ AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 139
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
F+ + L+++KT I VT ++E L AD IL++ G G +++L + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ GE I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE ++++ K CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T + + + + + ++ T + +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 127/202 (62%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+FG + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 94 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 153
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 154 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 213
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 214 LHEGSSYFYGTFSELQNLQPDF 235
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 81
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE + ++ K CQL +++ K K + + E G
Sbjct: 82 RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 201 KMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 127/203 (62%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
G I++NI+FG + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI
Sbjct: 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
+ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 200
Query: 813 VMKDGKITQAGKYNDLINSGTDF 835
++ +G G +++L N DF
Sbjct: 201 ILHEGSSYFYGTFSELQNLQPDF 223
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE + ++ K CQL +++ K K + + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 189 KMEHLKKADKILILHEG 205
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 142/234 (60%), Gaps = 2/234 (0%)
Query: 604 DLVEK--QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+L+EK Q +G + + D + +FS NP LK+INL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LL ILGE+ G +K G ++ +Q WI G I++NI+ G + RY +V+ AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQL 139
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
F+ + L+++KT I VT ++E L AD IL++ G G +++L + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ GE I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE ++++ K CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENI-IRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T + + + + + ++ T + +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 142/234 (60%), Gaps = 2/234 (0%)
Query: 604 DLVEK--QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+L+EK Q +G + + D + +FS NP LK+INL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LL ILGE+ G +K G ++ +Q WI G I++NI+ G + RY +V+ AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQL 139
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
F+ + L+++KT I VT ++E L AD IL++ G G +++L + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ GE I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE ++++ K CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIS-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T + + + + + ++ T + +
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 166 bits (421), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 126/202 (62%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+ G + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 171
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF 253
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 25/231 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE + ++ K CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENI-IAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG---LIEEFDNPANLLENKSS------SFSQLVAE 1481
++ + +D +L+L+ G F NL + SS SF Q AE
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE 269
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+FG + RY +V+ AC L++D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF 253
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 25/231 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ S DE + ++ K CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQ+ + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1440 RITSVIDSDLVLLLNHG---LIEEFDNPANLLENKSS------SFSQLVAE 1481
++ + +D +L+L+ G F NL + SS SF Q AE
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE 269
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 142/234 (60%), Gaps = 3/234 (1%)
Query: 604 DLVEK--QPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSS 661
+L+EK Q +G + + D + +FS NP LK+INL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 662 LLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721
LL ILGE+ G +K G ++ +Q WI G I++NI+ G + RY +V+ AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQL 138
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
++D+ + D TV+GE G+ LSGGQ+ RI +ARA+Y+D+D+YL D PF +D T +
Sbjct: 139 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
Query: 782 FQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
F+ + L+++KT I VT ++E L AD IL++ G G +++L + DF
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 252
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ GE I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ + S DE ++++ K CQL ++ K + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 157
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T + + + + + ++ T + +
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 218 KMEHLRKADKILILHQG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 127/202 (62%), Gaps = 1/202 (0%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+ G + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDF 252
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q+ + GT++ N+ + S DE + ++ K CQL +++ K K + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1440 RITSVIDSDLVLLLNHG---LIEEFDNPANLLENKSS------SFSQLVAE 1481
++ + +D +L+L+ G F NL + SS SF Q AE
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAE 268
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 127/202 (62%), Gaps = 1/202 (0%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+ G + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDF 252
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q+ + GT++ N+ + S DE + ++ K CQL +++ K K + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1440 RITSVIDSDLVLLLNHG---LIEEFDNPANLLENKSS------SFSQLVAE 1481
++ + +D +L+L+ G F NL + SS SF Q AE
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAE 268
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 692
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752
G I++NI+ G + RY +V+ AC L++D+ + D V+GE GI LSGGQ+ RI
Sbjct: 81 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 139
Query: 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
+ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL
Sbjct: 140 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 199
Query: 813 VMKDGKITQAGKYNDLINSGTDF 835
++ +G G +++L N DF
Sbjct: 200 ILHEGSSYFYGTFSELQNLQPDF 222
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ + S DE + ++ K CQL +++ K K + + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQR + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1440 RITSVIDSDLVLLLNHG 1456
++ + +D +L+L+ G
Sbjct: 188 KMEHLKKADKILILHEG 204
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 125/202 (61%), Gaps = 1/202 (0%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 693
P LKDIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
G I++NI+ G + RY +V+ AC L++D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813
ARA+Y+D+D+YL D PF +D T +F+ + L+++KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 814 MKDGKITQAGKYNDLINSGTDF 835
+ +G G +++L N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLQPDF 252
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
VL+ I+ G+ + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1322 RLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDK-CQLGDEVRKKEGKLDSKVTENG 1380
R+S Q + GT++ N+ + S DE + ++ K CQL +++ K K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1381 ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI-QQTLRQHFSDCTVLTIAH 1439
S GQ+ + L R + K + + +LD +D T+ I + + + ++ T + +
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1440 RITSVIDSDLVLLLNHG---LIEEFDNPANLLENKSS------SFSQLVAE 1481
++ + +D +L+L+ G F NL + SS SF Q AE
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE 268
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 150/577 (25%), Positives = 260/577 (45%), Gaps = 92/577 (15%)
Query: 960 PVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLF------------------ 1001
P + G T+ +V+V F +L R L+ Y +LLF
Sbjct: 57 PYLIGKTIDVVFVP----RRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRL 112
Query: 1002 -NEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVM 1060
E+ + R P+ FFD TP G II+R D + + + + + I+ + G + +M
Sbjct: 113 RKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMM 172
Query: 1061 SQVAWQVFIVFVPAVGSCIWYQQ--------YYISSARELSRLVGVCKAPVIQHFAETVS 1112
+V + +V + V + Q Y+ + R L +L G+ + E +S
Sbjct: 173 FRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE--------EDIS 224
Query: 1113 GSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLIS 1172
G T I+ F +E K M+++ R + ++ +G + + S + L L++
Sbjct: 225 GLTVIKLFTREE-------KEMEKFDR----VNESLRKVGTKAQIFSGV-----LPPLMN 268
Query: 1173 IPKGFIDPAIAG----LAVTYGLTLNTLLATLIWFA-------CDLENK-------IISV 1214
+ I+G LA+ +T+ T+ AT I ++ +L N+ + S
Sbjct: 269 MVNNLGFALISGFGGWLALKDIITVGTI-ATFIGYSRQFTRPLNELSNQFNMIQMALASA 327
Query: 1215 ERIFQYTCIPSEP--PLAIE--ESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTF 1270
ERIF+ + E P A+E E R G+I+ ++ Y + P VL+ I+
Sbjct: 328 ERIFEILDLEEEKDDPDAVELREVR--------GEIEFKNVWFSYDKKKP-VLKDITFHI 378
Query: 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDP 1330
G+K +VG TGSGK+T++ L R + RS + I+ QD
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438
Query: 1331 VMFEGTVRSNL---DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387
++F TV+ NL +P +TDE+I EA ++ ++ +T+NGE+ S GQ
Sbjct: 439 ILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496
Query: 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDS 1447
RQL+ + R L KIL+LDEAT++VDT T+ IQ + + T + IAHR+ ++ ++
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA 556
Query: 1448 DLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
DL+++L G I E L++ + + ++Y L
Sbjct: 557 DLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGL 593
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 30/322 (9%)
Query: 537 FVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFF 596
F ++ FG + L + G + + I R P+ L + +MI S +RI
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL 334
Query: 597 CLDDLQ--PDLVE-KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCG 653
L++ + PD VE ++ G E + FS+D P LKDI + G +VA+ G
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFK----NVWFSYD--KKKPVLKDITFHIKPGQKVALVG 388
Query: 654 TVGSGKSSLLSCILG--------------EVPKISGTLKLCGTKAYVAQSPWIQSGKIED 699
GSGK+++++ ++ ++ KI + L + V Q + S +++
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS-SLRSSIGIVLQDTILFSTTVKE 447
Query: 700 NILFGKEMNRERYNAVLDACSLKKD---LEILSFGDQTVIGERGINLSGGQKQRIQIARA 756
N+ +G + + +A L ++ L G +TV+ + G +LS GQ+Q + I RA
Sbjct: 448 NLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816
+ I + D+ S VD T + Q + L+ KT I + H++ + ADLI+V++D
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRD 564
Query: 817 GKITQAGKYNDLINSGTDFMEL 838
G+I + GK+++LI + EL
Sbjct: 565 GEIVEMGKHDELIQKRGFYYEL 586
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 1/241 (0%)
Query: 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF 1294
+ +D WPS G++ + DL +Y +L+ IS + G++ G++GRTGSGKSTL+
Sbjct: 9 KKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68
Query: 1295 RIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354
R++ R +IPQ +F GT R NLDP +D++IW+
Sbjct: 69 RLLNTEGEIQIDGVSWDSITLEQW-RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK 127
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
D+ L + + GKLD + + G S G +QL+CL R +L ++KIL+LDE +A +D
Sbjct: 128 VADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Query: 1415 TATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSS 1474
T +I++TL+Q F+DCTV+ RI ++++ D L++ + ++D+ L +
Sbjct: 188 PVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247
Query: 1475 F 1475
F
Sbjct: 248 F 248
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 19/225 (8%)
Query: 610 PSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
PSG T D+ + N L++I+ + G RV + G GSGKS+LLS L
Sbjct: 15 PSGGQMTVKDLT----AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-R 69
Query: 670 VPKISGTLKLCGT-----------KAY--VAQSPWIQSGKIEDNILFGKEMNRERYNAVL 716
+ G +++ G KA+ + Q +I SG N+ + + V
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776
D L+ +E V+ + G LS G KQ + +AR++ + I L D+P + +D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 777 TGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQ 821
T + + L + TVI ++E + D LV+++ K+ Q
Sbjct: 190 T-YQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 133/530 (25%), Positives = 238/530 (44%), Gaps = 40/530 (7%)
Query: 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQS------AADLG 1038
R L+ T+G + L + I R ++FFD T +G +INR S+D + +L
Sbjct: 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 141
Query: 1039 IPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGV 1098
GA A I ++ V +A V V P + Y +Y R+L+++
Sbjct: 142 DGLRAGAQASVGISMM--FFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQD 195
Query: 1099 CKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA-AMEWLGLRLDM 1157
A Q E + T+R+F +E M +++Y+ H+ A + R
Sbjct: 196 SLAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLARKEAFARAGF 248
Query: 1158 LSSITFAFTLVFLISIPKGFIDPAIAGLAV-------TYGLTLNTLLATLIWFACDLENK 1210
+ + L+ L + KG + A + V Y + + L F +L
Sbjct: 249 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 308
Query: 1211 IISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYA--PQMPLVLQGISC 1268
+ + R+++ + EP L E + G ++ ++ Y P++P + Q S
Sbjct: 309 LGAGGRLWE--LLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQDFSL 365
Query: 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQ 1328
+ P G T +VG +GSGKST++ L R+ +PA+ RS++ + Q
Sbjct: 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Query: 1329 DPVMFEGTVRSNL-----DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW 1383
+P++F ++ N+ DP T E+I + +R ++ V E G
Sbjct: 426 EPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITS 1443
S GQ+Q + + R LLK KIL+LDEAT+++D + L+Q+ L + TVL IAHR+++
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 544
Query: 1444 VIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSSSFENL 1493
+ ++++V +L+ G I E+ LL + + +L+ + + S++ ENL
Sbjct: 545 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISAA--ENL 592
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 139/592 (23%), Positives = 256/592 (43%), Gaps = 81/592 (13%)
Query: 290 KLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQ--YLNGRRDFENEGYVLVSA 347
KL+ + + GFLT + ++ S P+ + + Y N D+ + L
Sbjct: 9 KLLGLAYPERRRLAAAVGFLT-MSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 67
Query: 348 FCVAKLVECLCQRFRVFRLQQLGIR----MRAALIAMIYNKGLTLSSQAKQGQSSGEIIN 403
L RV+ +Q G R +R +L + I + + + + +GE+IN
Sbjct: 68 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR----TGELIN 123
Query: 404 FMTVDAERVA-DFSWYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVI--VMLVNIP 460
++ D + + + D + ++ I +++ +LA +V+ V ++ +
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMF--FVSPNLATFVLSVVPPVSIIAVI 181
Query: 461 LGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEM----KFLSKI---INLRKRE 513
GR S + + E + N+R ++ G EM K+ SK+ + L ++E
Sbjct: 182 YGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE 241
Query: 514 TGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIY 573
F A F + G I+L+V + G ++ + + +
Sbjct: 242 A----------------FARAGFFGATGLSGNLIVLSVLYKGGLLMGSA------HMTVG 279
Query: 574 NLPDVISMIIQTKVSLQRIASFFC--LDDLQP-----DLVEKQP-----------SGSSE 615
L + +S+ ++SF+ + L +L+E++P S +
Sbjct: 280 ELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQ 339
Query: 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
AL+ + +F++ P +D +L + G A+ G GSGKS++LS +L SG
Sbjct: 340 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399
Query: 676 TLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE----MNRERYNAVLDA 718
T+ L G V+Q P + S I +NI +G + + E V +
Sbjct: 400 TISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEV 459
Query: 719 CSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778
+ + G TV+GE+G+ LSGGQKQRI IARAL ++ I L D+ SA+DA
Sbjct: 460 ANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN- 518
Query: 779 SHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
+L QE L L+ +TV+ + H++ + A+++ V+ GKIT+ GK+ +L++
Sbjct: 519 EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/523 (24%), Positives = 232/523 (44%), Gaps = 36/523 (6%)
Query: 985 RSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQS------AADLG 1038
R L+ T+G + L + I R ++FFD T +G +INR S+D + +L
Sbjct: 113 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 172
Query: 1039 IPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGV 1098
GA A I ++ V +A V V P + Y +Y R+L+++
Sbjct: 173 DGLRAGAQASVGISMM--FFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQD 226
Query: 1099 CKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA-AMEWLGLRLDM 1157
A Q E + T+R+F +E M +++Y+ H+ A + R
Sbjct: 227 SLAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLARKEAFARAGF 279
Query: 1158 LSSITFAFTLVFLISIPKGFIDPAIAGLAV-------TYGLTLNTLLATLIWFACDLENK 1210
+ + L+ L + KG + A + V Y + + L F +L
Sbjct: 280 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 339
Query: 1211 IISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYA--PQMPLVLQGISC 1268
+ + R+++ + EP L E + G ++ ++ Y P++P + Q S
Sbjct: 340 LGAGGRLWE--LLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQDFSL 396
Query: 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQ 1328
+ P G T +VG +GSGKST++ L R+ +PA+ RS++ + Q
Sbjct: 397 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 456
Query: 1329 DPVMFEGTVRSNL----DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384
+P++F ++ N+ D T E+I + +R ++ V E G S
Sbjct: 457 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 516
Query: 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444
GQ+Q + + R LLK KIL+LDEAT+++D + L+Q+ L + TVL IAH ++++
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTI 576
Query: 1445 IDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSS 1487
++++V +L+ G I E+ LL + + +L+ + + S+
Sbjct: 577 KNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISA 619
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 140/593 (23%), Positives = 256/593 (43%), Gaps = 83/593 (13%)
Query: 290 KLIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQ--YLNGRRDFENEGYVLVSA 347
KL+ + + GFLT + ++ S P+ + + Y N D+ + L
Sbjct: 40 KLLGLAYPERRRLAAAVGFLT-MSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 98
Query: 348 FCVAKLVECLCQRFRVFRLQQLGIR----MRAALIAMIYNKGLTLSSQAKQGQSSGEIIN 403
L RV+ +Q G R +R +L + I + + + + +GE+IN
Sbjct: 99 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR----TGELIN 154
Query: 404 FMTVDAERVA-DFSWYIHDPWLVLFEVALSILILY---KNLGIASLAALFGTVIVMLVNI 459
++ D + + + D + ++ I +++ NL L+ + I+ ++
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVI-- 212
Query: 460 PLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEM----KFLSKI---INLRKR 512
GR S + + E + N+R ++ G EM K+ SK+ + L ++
Sbjct: 213 -YGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 271
Query: 513 ETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPI 572
E A + F+GA G I+L+V + G ++ + + +
Sbjct: 272 E-----------AFARAGFFGA-----TGLSGNLIVLSVLYKGGLLMGSA------HMTV 309
Query: 573 YNLPDVISMIIQTKVSLQRIASFFC--LDDLQP-----DLVEKQP-----------SGSS 614
L + +S+ ++SF+ + L +L+E++P S
Sbjct: 310 GELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSF 369
Query: 615 ETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674
+ AL+ + +F++ P +D +L + G A+ G GSGKS++LS +L S
Sbjct: 370 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 429
Query: 675 GTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE----MNRERYNAVLD 717
GT+ L G V+Q P + S I +NI +G + + E V +
Sbjct: 430 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 489
Query: 718 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHT 777
+ + G TV+GE+G+ LSGGQKQRI IARAL ++ I L D+ SA+DA
Sbjct: 490 VANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
Query: 778 GSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLIN 830
+L QE L L+ +TV+ + H + + A+++ V+ GKIT+ GK+ +L++
Sbjct: 550 -EYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 125/495 (25%), Positives = 228/495 (46%), Gaps = 39/495 (7%)
Query: 1000 LFNE-MHYCIFRAPMSFFDATPSGRIINRASTD-QSAADLGIPSLVGAYAFSIIR----I 1053
LFN MH P+ FFD +G +++R + D + A +LV SI+R I
Sbjct: 104 LFNHFMHM-----PVRFFDQESTGGLLSRITYDSEQVAGATSRALV-----SIVREGASI 153
Query: 1054 LGTIAVMSQVAWQ---VFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAET 1110
+G + +M +WQ V IV P V I + R++SR + V +
Sbjct: 154 IGLLTLMFWNSWQLSLVLIVVAPVVAFAI---SFVSKRFRKISRNMQTAMGHVTSSAEQM 210
Query: 1111 VSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL 1170
+ G + S+ + R R K+ + + T + +A + M++S+ F ++FL
Sbjct: 211 LKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLAL-FAVLFL 269
Query: 1171 ISIP--KGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPP 1228
S+ + + P + + L L L + + + + + +F
Sbjct: 270 ASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGL-------- 321
Query: 1229 LAIEESRPNDSWPS---HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSG 1285
+ +E R N + + +G++D+ D+ Y + L +S + P G+ +VGR+GSG
Sbjct: 322 MDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSG 381
Query: 1286 KSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLE 1345
KST+ R + + R +++ Q+ +F T+ +N+
Sbjct: 382 KSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441
Query: 1346 ES--TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403
E T EQI +A + + + LD+ + ENG + S GQRQ V + R LL+ + +
Sbjct: 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463
L+LDEAT+++DT ++ IQ L + + TVL IAHR++++ +D +L+++ G I E
Sbjct: 502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
Query: 1464 PANLLENKSSSFSQL 1478
A+LL + +++QL
Sbjct: 562 HADLLA-QDGAYAQL 575
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 162/364 (44%), Gaps = 32/364 (8%)
Query: 496 QGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVATFGTCILLNV---- 551
Q E K K+ N +++T K V +I+ V S+A F L +V
Sbjct: 223 QEVERKRFDKVSNSMRQQT---MKLVSAQSIADPVI---QMIASLALFAVLFLASVDSIR 276
Query: 552 -PLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE-KQ 609
L G + L P+ L V S + + Q + F L DL+ + K
Sbjct: 277 AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ---TLFGLMDLETERDNGKY 333
Query: 610 PSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669
+ +D+ D F++ P L ++ + G VA+ G GSGKS++ +
Sbjct: 334 EAERVNGEVDVKDVTFTYQ-GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 670 VPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNILFGKE--MNRERYNA 714
SG++ L G A V+Q+ + + I +NI + E RE+
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774
+ +E + G TVIGE G +LSGGQ+QR+ IARAL +D+ + + D+ SA+D
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 775 AHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
+ Q L L +KTV+ + H++ + AD ILV+ +G+I + G++ DL+
Sbjct: 513 TES-ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571
Query: 835 FMEL 838
+ +L
Sbjct: 572 YAQL 575
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 128/526 (24%), Positives = 234/526 (44%), Gaps = 41/526 (7%)
Query: 963 TGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSG 1022
TG +LIV + AVG C + S G LF ++ F ++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLIT 124
Query: 1023 RIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQ 1082
R+ N + Q+ + + +V A + I+ +++ +++ + + P V +W
Sbjct: 125 RLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 1083 QYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTF 1142
+ L R + V + E + G +R+F +E + + N + +E R +
Sbjct: 185 K----KGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREE-YENENFRKANESLRRSI 239
Query: 1143 HIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKGFI------------DPAIAGLAVTYG 1190
+ S I FA L F+ + G I + G + Y
Sbjct: 240 ------------ISAFSLIVFALPL-FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYT 286
Query: 1191 LTLNTLLATLIWFACDLENKII----SVERIFQYTCIPSEPPLAIEESRPNDSWPS-HGK 1245
L ++ +L+ ++ N I+ S +R+ + + +E P AIEE+ + P+ G
Sbjct: 287 NYLMQIMFSLMMIG-NILNFIVRASASAKRVLE---VLNEKP-AIEEADNALALPNVEGS 341
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
+ +++ RY VL G++ + G ++G TGSGKSTL+ + R+++P
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGDE 1364
R +S +PQ+ V+F GT++ NL E++TD++I EA Q+ D
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDF 461
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ DS+V G N+S GQ+Q + + R L+K+ K+L+LD+ T+SVD T+ I
Sbjct: 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG 521
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470
L+++ CT I +I + + +D +L+L+ G + F LLE+
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 228/517 (44%), Gaps = 61/517 (11%)
Query: 358 CQRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW 417
C F + Q G +R L + K L+ S + +I +T D ++ +
Sbjct: 83 CTVFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVM 138
Query: 418 Y-----IHDPWLVLFEVALSILILYKNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKL 472
+ P L + + +++ I N+ ++S+ IV+L + L + K+
Sbjct: 139 MLLRIVVRAPLLFVGGIVMAVSI---NVKLSSVLIFLIPPIVLLF-VWLTKKGNPLFRKI 194
Query: 473 MKSKDERMKATSEIL---RNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTS----- 524
+S DE + E L R +R + + +E + N RK L++ + ++
Sbjct: 195 QESTDEVNRVVRENLLGVRVVRAFRREEYENE------NFRKANES-LRRSIISAFSLIV 247
Query: 525 -AISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMII 583
A+ F+F ++V FG ++ N +E G +++ + + + ++++ I+
Sbjct: 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 584 QTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWD------ISSHNPTLK 637
+ S +R+ + +P + E + AL V+G+ S++ + +P L
Sbjct: 308 RASASAKRVLEVL---NEKPAIEE----ADNALALPNVEGSVSFENVEFRYFENTDPVLS 360
Query: 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG----------TLKLCGTKAYVA 687
+N V G VAV G GSGKS+L++ I + G T+KL + +++
Sbjct: 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420
Query: 688 QSPW---IQSGKIEDNILFGKEMNRERYNAVLDACSLKK--DLEI-LSFGDQTVIGERGI 741
P + SG I++N+ +G+E + + +++A + + D I L G + + G
Sbjct: 421 AVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQ 801
N SGGQKQR+ IARAL + + + DD S+VD T + + L T +T +
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQK 537
Query: 802 VEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
+ AD ILV+ +GK+ G + +L+ + E+
Sbjct: 538 IPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREI 574
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 220/483 (45%), Gaps = 48/483 (9%)
Query: 1012 PMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR----ILGTIAVMSQVAWQ- 1066
P+SFFD +G +++R + D + S +++R I+G +M +WQ
Sbjct: 112 PVSFFDKQSTGTLLSRITYDSEQ----VASSSSGALITVVREGASIIGLFIMMFYYSWQL 167
Query: 1067 --VFIVFVPAVGSCIWY-QQYYISSARELSRLVGVCKAPVIQ----HFAETVSGSTTI-- 1117
+ IV P V I + + + ++ + +G Q H + G +
Sbjct: 168 SIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 1118 RSFDQES-RFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIPKG 1176
+ FD+ S R R + MK++ S I+ + + +++S+ AF L + S P
Sbjct: 228 KRFDKVSNRMRLQGMKMVSASS-----ISDPI------IQLIASLALAFVL-YAASFPS- 274
Query: 1177 FIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRP 1236
+D AG T+ + +++I L++ + +V FQ + I +S
Sbjct: 275 VMDSLTAG-------TITVVFSSMIALMRPLKS-LTNVNAQFQRGMAACQTLFTILDSEQ 326
Query: 1237 NDSWPSH------GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI 1290
G ++ ++ Y + L+ I+ P G+ +VGR+GSGKST+
Sbjct: 327 EKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 1291 QTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLD--PLEEST 1348
+ R + R++++++ Q+ +F TV +N+ E+ +
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 1349 DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDE 1408
EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ S IL+LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLL 1468
AT+++DT ++ IQ L + + T L IAHR++++ +D ++++ G+I E +LL
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
Query: 1469 ENK 1471
E++
Sbjct: 567 EHR 569
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 220/474 (46%), Gaps = 66/474 (13%)
Query: 396 QSSGEIINFMTVDAERVADFS-----WYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450
QS+G +++ +T D+E+VA S + + + + L I++ Y + ++ + +
Sbjct: 119 QSTGTLLSRITYDSEQVASSSSGALITVVREGASI---IGLFIMMFYYSWQLSIILIVLA 175
Query: 451 TVIVMLVNIPLGR---VQENFQD---KLMKSKDERMKATSEILRNMRILKLQGWEMKFLS 504
++ + + + R + +N Q+ ++ S ++ +K E+L I Q E K
Sbjct: 176 PIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFD 231
Query: 505 KIINLRKRETGWLKKYVYTSAIS------------SFVFWGA--PTFVSVATFGTCILLN 550
K+ N R R G K V S+IS +FV + A P+ + T GT ++
Sbjct: 232 KVSN-RMRLQGM--KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV- 287
Query: 551 VPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQP 610
S IA R P+ +L +V + + + Q + F LD Q K+
Sbjct: 288 -------FSSMIALMR----PLKSLTNVNAQFQRGMAACQTL--FTILDSEQEKDEGKRV 334
Query: 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL--- 667
+ ++ + F++ P L++INLK+ G VA+ G GSGKS++ S I
Sbjct: 335 IERATGDVEFRNVTFTYP-GRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 668 ----GEVPKISGTLK------LCGTKAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAV 715
GE+ L+ L A V+Q+ + + + +NI + + + +RE+
Sbjct: 394 DIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEA 453
Query: 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
+ + G TVIGE G+ LSGGQ+QRI IARAL +DS I + D+ SA+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ Q L L ++T + + H++ + AD I+V++DG I + G +NDL+
Sbjct: 514 ES-ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/482 (24%), Positives = 216/482 (44%), Gaps = 52/482 (10%)
Query: 1012 PMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR----ILGTIAVMSQVAWQ- 1066
P++FFD +G +++R + D + S +++R I+G +M +WQ
Sbjct: 112 PVAFFDKQSTGTLLSRITYDSEQ----VASSSSGALITVVREGASIIGLFIMMFYYSWQL 167
Query: 1067 --VFIVFVPAVGSCIWY-QQYYISSARELSRLVGVCKAPVIQ----HFAETVSGSTTI-- 1117
+ +V P V I + + S ++ + +G Q H + G +
Sbjct: 168 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 1118 RSFDQES-RFRDRNMKLMD--EYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFLISIP 1174
+ FD+ S + R + MK++ S P + +++S+ AF L + S P
Sbjct: 228 KRFDKVSNKMRLQGMKMVSASSISDPI-------------IQLIASLALAFVL-YAASFP 273
Query: 1175 KGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEES 1234
+D AG T+ + +++I L++ + +V FQ + AI +S
Sbjct: 274 S-VMDSLTAG-------TITVVFSSMIALMRPLKS-LTNVNAQFQRGMAACQTLFAILDS 324
Query: 1235 RPNDSWPSH------GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKST 1288
G ++ ++ Y + L+ I+ P G+ +VGR+GSGKST
Sbjct: 325 EQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKST 384
Query: 1289 LIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLD--PLEE 1346
+ + R + R++++++ Q+ +F TV +N+ EE
Sbjct: 385 IASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE 444
Query: 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406
+ EQI EA D + K + LD+ + ENG S GQRQ + + R LL+ S IL+L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 1407 DEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466
DEAT+++DT ++ IQ L + + T L IAHR++++ +D ++++ G+I E +
Sbjct: 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 564
Query: 1467 LL 1468
LL
Sbjct: 565 LL 566
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 219/474 (46%), Gaps = 66/474 (13%)
Query: 396 QSSGEIINFMTVDAERVADFS-----WYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450
QS+G +++ +T D+E+VA S + + + + L I++ Y + ++ + +
Sbjct: 119 QSTGTLLSRITYDSEQVASSSSGALITVVREGASI---IGLFIMMFYYSWQLSIILVVLA 175
Query: 451 TVIVMLVNIPLGR---VQENFQD---KLMKSKDERMKATSEILRNMRILKLQGWEMKFLS 504
++ + + + R + +N Q+ ++ S ++ +K E+L I Q E K
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFD 231
Query: 505 KIINLRKRETGWLKKYVYTSAIS------------SFVFWGA--PTFVSVATFGTCILLN 550
K+ N + R G K V S+IS +FV + A P+ + T GT ++
Sbjct: 232 KVSN-KMRLQGM--KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV- 287
Query: 551 VPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQP 610
S IA R P+ +L +V + + + Q + F LD Q K+
Sbjct: 288 -------FSSMIALMR----PLKSLTNVNAQFQRGMAACQTL--FAILDSEQEKDEGKRV 334
Query: 611 SGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL--- 667
+ L+ + F++ P L++INLK+ G VA+ G GSGKS++ S I
Sbjct: 335 IDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 668 ----GEVPKISGTLK------LCGTKAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAV 715
G + L+ L A V+Q+ + + + +NI + + E +RE+
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775
+ + G T+IGE G+ LSGGQ+QRI IARAL +DS I + D+ SA+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ Q L L ++T + + H++ + AD I+V++DG I + G +++L+
Sbjct: 514 ES-ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 222/491 (45%), Gaps = 69/491 (14%)
Query: 381 IYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKN 439
+YN LS++ G++I+ + D E+ DF + + WL + +++ I++
Sbjct: 100 LYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159
Query: 440 LGIASLAALF-GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEI-------LRNMR 491
+LAALF ++ V + GR L K ER +A +E+ ++ +
Sbjct: 160 DVKLTLAALFIFPFYILTVYVFFGR--------LRKLTRERSQALAEVQGFLHERVQGIS 211
Query: 492 ILK---LQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWGAPTFVSVAT---FGT 545
++K ++ E K N K+ T +L + + + W A +F ++ T G
Sbjct: 212 VVKSFAIEDNEAK------NFDKKNTNFLTRALKHTR------WNAYSFAAINTVTDIGP 259
Query: 546 CILLNV--------PLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFC 597
I++ V + G + + + LL P+ L + + Q+ S+ R+ F
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV---FQ 316
Query: 598 LDDLQPDL---VEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGT 654
L D D+ V QP + +DI +F ++ + P LKDINL + G VA G
Sbjct: 317 LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGM 375
Query: 655 VGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGKIEDNI 701
G GKS+L++ I SG + + G V Q + S +++NI
Sbjct: 376 SGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435
Query: 702 LFGKEMNRERYNAVLDACSLKKDLEI---LSFGDQTVIGERGINLSGGQKQRIQIARALY 758
L G+ + V++A + + L G T +GERG+ LSGGQKQR+ IAR
Sbjct: 436 LLGRPTATDE--EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493
Query: 759 QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGK 818
+ I + D+ SA+D + S + QE L L +T + V H++ + AD I+V+++G
Sbjct: 494 NNPPILILDEATSALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 552
Query: 819 ITQAGKYNDLI 829
I + G + +LI
Sbjct: 553 IVETGTHRELI 563
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 173/385 (44%), Gaps = 29/385 (7%)
Query: 1090 RELSRLVGVCKAPVIQHFAETVSGSTTIRSF---DQESR-FRDRNMKLMDEYSRPTFHIA 1145
R+L+R A V E V G + ++SF D E++ F +N + + T A
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245
Query: 1146 AAMEWLGLRLDMLSSITFAFTLVFLIS--IPKGFIDPAIAGLAVTYGLTLNTLLATLIWF 1203
+ + D+ I IS I G + + L + +G L L+A+
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG-PLRRLVASF--- 301
Query: 1204 ACDLENKIISVERIFQYTCIPSE-------PPLAIEESRPNDSWPSHGKIDLLDLQVRYA 1256
L S++R+FQ + P+ I++ G+ID+ + +Y
Sbjct: 302 -TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQ----------GRIDIDHVSFQYN 350
Query: 1257 PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXX 1316
+L+ I+ + GE VG +G GKSTLI + R + +
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410
Query: 1317 XXXRSRLSIIPQDPVMFEGTVRSN-LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375
R+++ ++ QD ++F TV+ N L +TDE++ EA D + D++
Sbjct: 411 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE 470
Query: 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVL 1435
V E G S GQ+Q + + R+ L IL+LDEAT+++D ++++IQ+ L D T L
Sbjct: 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTL 530
Query: 1436 TIAHRITSVIDSDLVLLLNHGLIEE 1460
+AHR++++ +D ++++ +G I E
Sbjct: 531 IVAHRLSTITHADKIVVIENGHIVE 555
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 8/238 (3%)
Query: 1239 SWPSHGK-----IDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT 1292
S SH K I+ D+ Y Q L+ I+ P G +VG TGSGKST+ +
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 1293 LFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSN-LDPLEESTDEQ 1351
L+R + A RS + I+PQD ++F T++ N L ++TDE+
Sbjct: 66 LYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEE 124
Query: 1352 IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411
+ +A QL D + K D+ V G S G+RQ + + R LLK KI++ DEAT+
Sbjct: 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATS 184
Query: 1412 SVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
S+D+ T+ L Q+ + + T++ IAHR++++ ++ ++LLN G I E +LL+
Sbjct: 185 SLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 16/235 (6%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
++ D NFS+ +++ TLK IN + G A+ G GSGKS++ + +L G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGDI 76
Query: 678 KLCGTK-------------AYVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKK 723
K+ G V Q + + I+ NIL+GK + E + L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+E L T++G +G+ LSGG++QRI IAR L +D I +FD+ S++D+ T +LFQ
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQ 195
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
+ + L ++T+I + H++ + +A+ I+++ GKI + G + DL+ ++ E+
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 2/199 (1%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
+L+ IS G +G GKST+ L R +P A RS
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 1322 RLSIIPQDPVMFEGTVRSNLD-PLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTEN 1379
++ + QD + GT+R NL LE + TDE +W+ LD V +L+++V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439
G S GQRQ + + R L+ KILMLDEATAS+D+ +++++Q+ L T L IAH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 1440 RITSVIDSDLVLLLNHGLI 1458
R+++++D+D + + G I
Sbjct: 197 RLSTIVDADKIYFIEKGQI 215
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 18/221 (8%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
+F++D S L+DI+ + +A G G GKS++ S + +G + + G
Sbjct: 8 DFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 684 -------------AYVAQSPWIQSGKIEDNILFGKEMN--RERYNAVLDACSLKKDLEIL 728
+V+Q I +G I +N+ +G E + E VLD + +E +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S + Q+ L
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKALDS 184
Query: 789 LLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
L+ +T + + H++ + AD I ++ G+IT +GK+N+L+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 4/245 (1%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1302
H I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1303 XXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQL 1361
R ++ ++ QD V+ ++ N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1422 QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
+ + + TV+ IAHR+++V ++D ++++ G I E LL S +S L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL--- 237
Query: 1482 YTLRS 1486
Y L+S
Sbjct: 238 YQLQS 242
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 62
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 181
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 4/245 (1%)
Query: 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAX 1302
H I +++ RY P P++L I+ + GE GIVGR GSGKSTL + + R P
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1303 XXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQL 1361
R ++ ++ QD V+ ++ N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421
D + + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1422 QQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481
+ + + TV+ IAHR+++V ++D ++++ G I E LL S +S L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL--- 237
Query: 1482 YTLRS 1486
Y L+S
Sbjct: 238 YQLQS 242
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQV 62
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 181
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 4/242 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDE 1364
R ++ ++ QD V+ ++ N+ E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ + TV+ IAHR+++V ++D ++++ G I E LL S +S L Y L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL---YQL 238
Query: 1485 RS 1486
+S
Sbjct: 239 QS 240
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 179
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 4/242 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDE 1364
R ++ ++ QD V+ ++ N+ E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ + TV+ IAHR+++V ++D ++++ G I E LL S +S L Y L
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL---YQL 244
Query: 1485 RS 1486
+S
Sbjct: 245 QS 246
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 185
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 132/264 (50%), Gaps = 12/264 (4%)
Query: 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQG 1265
D+EN ++ + +P PL ++ G+I+ ++ YA LQ
Sbjct: 24 DMENMFDLLKEETEVKDLPGAGPLRFQK----------GRIEFENVHFSYADGRE-TLQD 72
Query: 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSI 1325
+S T G+ +VG +G+GKST+++ LFR + ++ RS + +
Sbjct: 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132
Query: 1326 IPQDPVMFEGTVRSNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384
+PQD V+F T+ N+ + ++++ A + D + ++V E G S
Sbjct: 133 VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192
Query: 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444
G++Q V + R +LK I++LDEAT+++DT+ + IQ +L + ++ T + +AHR+++V
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252
Query: 1445 IDSDLVLLLNHGLIEEFDNPANLL 1468
+++D +L++ G I E LL
Sbjct: 253 VNADQILVIKDGCIVERGRHEALL 276
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 15/229 (6%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 681
N + + TL+D++ V G +A+ G G+GKS++L + SG +++ G
Sbjct: 58 NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117
Query: 682 ----TKA-------YVAQSPWIQSGKIEDNILFGK-EMNRERYNAVLDACSLKKDLEILS 729
T+A V Q + + I DNI +G+ + A A + +
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 730 FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789
G +T +GERG+ LSGG+KQR+ IAR + + I L D+ SA+D + Q L +
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT-SNERAIQASLAKV 236
Query: 790 LSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
+++T I V H++ + AD ILV+KDG I + G++ L++ G + ++
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 4/242 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDE 1364
R ++ ++ QD V+ ++ N+ E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ D+AT+++D ++++I +
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ + TV+ IAHR+++V ++D ++++ G I E LL S +S L Y L
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL---YQL 244
Query: 1485 RS 1486
+S
Sbjct: 245 QS 246
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD SA+D + H+
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESEHVIM 185
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 4/242 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDE 1364
R ++ ++ QD V+ ++ N+ E++ A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ + TV+ IA R+++V ++D ++++ G I E LL S +S L Y L
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL---YQL 238
Query: 1485 RS 1486
+S
Sbjct: 239 QS 240
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 179
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + ++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 4/242 (1%)
Query: 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXX 1305
I +++ RY P P++L I+ + GE GIVGR+GSGKSTL + + R P
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1306 XXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLEESTD-EQIWEALDKCQLGDE 1364
R ++ ++ QD V+ ++ N+ E++ A D
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
+ + ++ V E G S GQRQ + + R L+ KIL+ DEAT+++D ++++I +
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 1425 LRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+ + TV+ IA R+++V ++D ++++ G I E LL S +S L Y L
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL---YQL 244
Query: 1485 RS 1486
+S
Sbjct: 245 QS 246
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)
Query: 619 DIVDGNFSWDISSHNPT-LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
DI N + +P L +INL + G + + G GSGKS+L I +G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 678 KLCGTKAYVAQSPWI--QSGKI-EDNILFGKE-----------MNRERYNAVLDACSLKK 723
+ G +A W+ Q G + +DN+L + M+ E+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783
+ L G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIM 185
Query: 784 EVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829
+ + +TVI + ++ + AD I+VM+ GKI + GK+ +L+
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 87.8 bits (216), Expect = 4e-17, Method: Composition-based stats.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 11/249 (4%)
Query: 1241 PSH--GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296
P H G + D+ Y P P LVLQG++ T GE T +VG GSGKST+ L +
Sbjct: 8 PLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 1297 VEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWE 1354
+P +++ + Q+P +F +++ N+ ++ T E+I
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
A K + D++V E G S GQRQ V L R L+++ +L+LD+AT+++D
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 1415 TATDNLIQQTLR---QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENK 1471
+ ++Q L + +S +VL I ++ V +D +L L G I E L+E K
Sbjct: 187 ANSQLQVEQLLYESPERYSR-SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 245
Query: 1472 SSSFSQLVA 1480
++ + A
Sbjct: 246 GCYWAMVQA 254
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 20/228 (8%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK------------ 683
L+ + + G A+ G GSGKS++ + + G L L G
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 92
Query: 684 -AYVAQSPWIQSGKIEDNILFG--KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740
A V Q P + +++NI +G ++ E A + L G T + E G
Sbjct: 93 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAG 152
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL---GLLSSKTVIY 797
LSGGQ+Q + +ARAL + + + DD SA+DA+ S L E LL S++V+
Sbjct: 153 SQLSGGQRQAVALARALIRKPCVLILDDATSALDAN--SQLQVEQLLYESPERYSRSVLL 210
Query: 798 VTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAHEQA 845
+T + + AD IL ++ G I + G + L+ + +V A A
Sbjct: 211 ITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQAPADA 258
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 7/232 (3%)
Query: 1244 GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
G + D+ Y P P VLQG++ T G+ T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1302 XXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKC 1359
++++ + Q+P++F + R N+ T E+I +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
D + D++V E G S GQRQ V L R L+++ ++L+LD+AT+++D
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 1420 LIQQTLRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
+Q+ L + ++ TVL I H+++ + +L L G + E L+E
Sbjct: 194 RVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 20/236 (8%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
D +F++ + L+ + ++ G A+ G GSGKS++ + + G + L G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 682 TK-------------AYVAQSPWIQSGKIEDNILFG--KEMNRERYNAVLDACSLKKDLE 726
A V Q P + +NI +G + E AV +
Sbjct: 81 EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
G T +GE G LSGGQ+Q + +ARAL + + + D SA+DA G+ L + L
Sbjct: 141 GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQLRVQRL 198
Query: 787 L---GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
L +S+TV+ +THQ+ A IL +K+G + + G + L+ G + +V
Sbjct: 199 LYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKT 794
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
+IYVTH QVE + AD I+V+ G++ Q GK +L + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVLTIAHR 1440
S GQRQ V +GR L+ + +LDE +++D A ++ L + + +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ +D +++L+ G + + P L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKT 794
+ LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
+IYVTH QVE + AD I+V+ G++ Q GK +L + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVLTIAHR 1440
S GQRQ V +GR L+ + +LDE +++D A ++ L + + +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ +D +++L+ G + + P L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------Y 685
LKD+N + G V G GSGK++LL + G + +G + L G+ A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 686 VAQSPWIQ--SGKIEDNILFGKEMNRERYNAVLDACSLKKDLE-ILSF-GDQTVIGERGI 741
V Q+P Q +E+++ F E+ LD ++K ++ +L G + +
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEI------MGLDESEMRKRIKKVLELVGLSGLAAADPL 139
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-KTVIYVTH 800
NLSGGQKQR+ IA L +D+ D+P S +D + +FQ VL L + K +I VTH
Sbjct: 140 NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ-VLESLKNEGKGIILVTH 198
Query: 801 QVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838
++E+L D IL + +G I G + + + D +E+
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEI 236
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 33/228 (14%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXX 1304
+I+L + RY VL+ ++ F G+ +VG+ GSGK+TL++ L ++ A
Sbjct: 11 RIELNSVSFRYNGDY--VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIF 68
Query: 1305 XXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTV-----RSNLDPLEESTDEQIWEALDKC 1359
L P DP + V + + + +E + +L+
Sbjct: 69 ------------------LDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM 110
Query: 1360 QLGD-EVRKKEGKLDSKVTENG------ENWSMGQRQLVCLGRVLLKRSKILMLDEATAS 1412
L + E+RK+ K+ V +G N S GQ+Q + + +L + ++ L LDE +
Sbjct: 111 GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSM 170
Query: 1413 VDTATDNLIQQTLRQHFSDCT-VLTIAHRITSVIDSDLVLLLNHGLIE 1459
+D + I Q L ++ ++ + H + + D D +L +++G I+
Sbjct: 171 LDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTID 218
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 36/221 (16%)
Query: 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 695
KDINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 696 -------------KIEDNILFG-------KEMNRERYNAVLDACSLKKDLEILSFGDQTV 735
+ +N+ FG KE+ +R N V + L L+
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD--------- 128
Query: 736 IGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKT 794
+ LSGGQ+QR+ I R L + ++L D P S +DA + E+ L +T
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 795 VIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINSGTD 834
+IYVTH QVE + AD I+V+ G++ Q GK +L + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVLTIAHR 1440
S GQRQ V +GR L+ + +LD+ +++D A ++ L + + +
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ +D +++L+ G + + P L + F
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 29/214 (13%)
Query: 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGTK-------- 683
N +L +++LKV G + G G+GK+ L I G VP SG + L G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEK 71
Query: 684 ---AYVAQS-PWIQSGKIEDNILFGKEMNR-ERYNAVLDACSLKKDLEILSFGDQTVIGE 738
A+V Q+ ++ N+ FG M + + VLD +DL+I D+
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA---RDLKIEHLLDRN---- 124
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TV 795
+ LSGG++QR+ +ARAL + I L D+P SA+D T + + +L +L K TV
Sbjct: 125 -PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE--MLSVLHKKNKLTV 181
Query: 796 IYVTH-QVEFLPAADLILVMKDGKITQAGKYNDL 828
+++TH Q E AD I V+ DGK+ Q GK ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 27/122 (22%)
Query: 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS 1430
K++ + N S G++Q V L R L+ KIL+LDE +++D T Q+ R+ S
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT----QENAREMLS 171
Query: 1431 ------DCTVLTIAH----------RITSVIDSDLVLLLNHGLIEE-FDNPANLLENKSS 1473
TVL I H RI V+D L+ + G EE F+ P +E + +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV---GKPEEIFEKP---VEGRVA 225
Query: 1474 SF 1475
SF
Sbjct: 226 SF 227
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 1244 GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
G + D+ Y P P VLQG++ T G+ T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1302 XXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKC 1359
++++ + Q+P++F + R N+ T E+I +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
D + D++V E G ++GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1420 LIQQTLRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
+Q+ L + ++ TVL I +++ + +L L G + E L+E
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 20/236 (8%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
D +F++ + L+ + ++ G A+ G GSGKS++ + + G + L G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 682 TK-------------AYVAQSPWIQSGKIEDNILFG--KEMNRERYNAVLDACSLKKDLE 726
A V Q P + +NI +G + E AV +
Sbjct: 81 EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
G T +GE G L+ GQ+Q + +ARAL + + + D+ SA+DA G+ L + L
Sbjct: 141 GFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRL 198
Query: 787 L---GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
L +S+TV+ +T Q+ A IL +K+G + + G + L+ G + +V
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 7/232 (3%)
Query: 1244 GKIDLLDLQVRYAPQMP--LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
G + D+ Y P P VLQG++ T G+ T +VG GSGKST+ L + +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1302 XXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNL--DPLEESTDEQIWEALDKC 1359
++++ + Q+P++F + R N+ T E+I +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419
D + D++V E G S GQRQ V L R L+++ ++L+LD AT+++D
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1420 LIQQTLRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469
+Q+ L + ++ TVL I +++ + +L L G + E L+E
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 20/236 (8%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681
D +F++ + L+ + ++ G A+ G GSGKS++ + + G + L G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 682 TK-------------AYVAQSPWIQSGKIEDNILFG--KEMNRERYNAVLDACSLKKDLE 726
A V Q P + +NI +G + E AV +
Sbjct: 81 EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 727 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786
G T +GE G LSGGQ+Q + +ARAL + + + D+ SA+DA G+ L + L
Sbjct: 141 GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRL 198
Query: 787 L---GLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839
L +S+TV+ +T Q+ A IL +K+G + + G + L+ G + +V
Sbjct: 199 LYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 40/222 (18%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GNF+ L +INLK+ G +A+ G GSGKS+LL I G SG K+
Sbjct: 14 GNFT--------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG--KIYFD 63
Query: 683 KAYVAQSP------------WI--QSGKIEDNILFGKEMNRE-RYNAVLDACSLKKDLEI 727
+ V + P W + NI F E+ + R + K L I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL- 786
++ LSGGQ+QR+ IARAL ++ ++ L D+P S +DA + E+
Sbjct: 124 -----DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178
Query: 787 ----LGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAG 823
LG+ T +YVTH Q E L AD I V+++G+I Q G
Sbjct: 179 LQKELGI----TTVYVTHDQAEALAMADRIAVIREGEILQVG 216
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 16/209 (7%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSR 1322
L I+ GE ++G +GSGKSTL+ T+ I +P +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 1323 LSIIPQDPVMF-EGTVRSNLD-PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380
+ ++ Q+ ++ TV N+ PLE + E +DK +VR+ L N
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPR--EEIDK-----KVREVAKMLHIDKLLNR 129
Query: 1381 ENWSM--GQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVL 1435
W + GQ+Q V + R L+K ++L+LDE +++D ++ + L++ TV
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 1436 TIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464
+ ++ +D + ++ G I + P
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTP 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 55/226 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS++L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSL----------------------------KKDLE 726
++D+ L ++ R++ V +L K+ LE
Sbjct: 70 NDLDDDEL--TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 727 ILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
L + + ER N LSGGQ+QR+ IARAL + I L D P A+D+ TG +
Sbjct: 128 CLKMAE---LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 782 FQEVLLGLLSS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
Q LL L+ KTV+ VTH + + I+ +KDG++ + K
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 17/209 (8%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSR 1322
L+ ++ GE I+G +GSGKST++ + + +P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD----DE 76
Query: 1323 LSIIPQDPVMFEGTVRSNLDPL---EESTDEQIWEALDKCQLGDEVRK------KEGKLD 1373
L+ I +D + F + NL PL E+ + + G+E RK K +L+
Sbjct: 77 LTKIRRDKIGFVFQ-QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 1374 SKVTENGEN-WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD- 1431
+ + N S GQ+Q V + R L I++ D+ T ++D+ T I Q L++ +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 1432 -CTVLTIAHRITSVIDSDLVLLLNHGLIE 1459
TV+ + H I + ++ L G +E
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 28/208 (13%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 683
+++ ++ ++ G V + G GSGK+++L I G G + + G +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 684 AYVAQS-PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
V Q+ Q + DN+ FG R + +DA + E+L F R +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDE-MDA----RVRELLRFMRLESYANRFPH 144
Query: 743 -LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL-----LGLLSSKTVI 796
LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+ T +
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV----TSV 200
Query: 797 YVTH-QVEFLPAADLILVMKDGKITQAG 823
+VTH Q E L AD +LV+ +G + Q G
Sbjct: 201 FVTHDQEEALEVADRVLVLHEGNVEQFG 228
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSR 1322
++G+S GE G++G +GSGK+T+++ + + P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 1323 LSIIPQDPVMFEG-TVRSNLD-PLEESTDEQIWEALDKCQLGDEVRK--KEGKLDSKVTE 1378
+ ++ Q+ +F+ TV N+ L E + + K ++ VR+ + +L+S
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLRE-------KRVPKDEMDARVRELLRFMRLESYANR 141
Query: 1379 NGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLT-- 1436
S GQ+Q V L R L R ++L+ DE A++DT ++ +RQ + V +
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 1437 IAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ H ++ +D VL+L+ G +E+F P + E + F
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 49/223 (21%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS++L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSL----------------------------KKDLE 726
++D+ L ++ R++ V +L K+ LE
Sbjct: 70 NDLDDDEL--TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 727 ILSFGD--QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784
L + + + LSGGQ+QR+ IARAL + I L D P A+D+ TG + Q
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ- 186
Query: 785 VLLGLLSS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
LL L+ KTV+ VTH + + I+ +KDG++ + K
Sbjct: 187 -LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSR 1322
L+ ++ GE I+G +GSGKST++ + + +P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD----DE 76
Query: 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQL-----------GDEVRK---- 1367
L+ I +D + F + NL PL AL+ +L G+E RK
Sbjct: 77 LTKIRRDKIGFVFQ-QFNLIPL--------LTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 1368 --KEGKLDSKVTENGENW-SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424
K +L+ + + N S GQ+Q V + R L I++ D+ T ++D+ T I Q
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 1425 LRQ--HFSDCTVLTIAHRITSVIDSDLVLLLNHGLIE 1459
L++ TV+ + H I + ++ L G +E
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 624 NFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683
N + + N + +N + G +AV G G GKS+LL +LG I G +++ +
Sbjct: 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI 68
Query: 684 AYVAQ---SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740
+V Q SP+ S + D +L G+ + + A + + ++ L + + T + +R
Sbjct: 69 GFVPQFFSSPFAYS--VLDIVLMGRSTHINTF-AKPKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 741 I-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL------SSK 793
+LSGGQ+Q I IARA+ + + L D+P SA+D Q+++L LL +
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN-----QDIVLSLLIDLAQSQNM 180
Query: 794 TVIYVTHQ 801
TV++ THQ
Sbjct: 181 TVVFTTHQ 188
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
+ Q ++ G+ ++G+ G GKSTL+ L I P
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSP 78
Query: 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI-WEALDKCQLGDEVRKKEGKLDSKVTEN 1379
S++ D V+ + N +S D Q+ +ALD L +++ L
Sbjct: 79 FAYSVL--DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL------- 129
Query: 1380 GENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL--RQHFSDCTVLTI 1437
S GQRQL+ + R + K+++LDE T+++D A +++ L + TV+
Sbjct: 130 ----SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 1438 AHRITSVID-SDLVLLLN 1454
H+ V+ ++ LLLN
Sbjct: 186 THQPNQVVAIANKTLLLN 203
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 55/226 (24%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL-KLCGTKAYVAQSPWIQS 694
LK++NL + G V++ G GSGKS+ L+ I G L K + Y+ I++
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII--------GCLDKPTEGEVYIDN---IKT 69
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSL----------------------------KKDLE 726
++D+ L ++ R++ V +L K+ LE
Sbjct: 70 NDLDDDEL--TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE 127
Query: 727 ILSFGDQTVIGERGIN-----LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
L + + ER N LSGGQ+QR+ IARAL + I L D+P A+D+ TG +
Sbjct: 128 CLKXAE---LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKI 184
Query: 782 FQEVLLGLLSS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824
Q LL L+ KTV+ VTH + + I+ +KDG++ + K
Sbjct: 185 XQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 689
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 690 PW-------IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS--FGDQTVIGERG 740
P Q+ + N+ + + N + ++K +E ++ V+
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH---TGSHLFQEV--LLGLLSSKTV 795
LSGGQ+QR+ +ARAL +D + L D+PFS +DA + L +EV LG+ T+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV----TL 194
Query: 796 IYVTHQ-VEFLPAADLILVMKDGKITQAGKYNDLINS 831
+ V+H + AD + V+ GK+ Q GK DL ++
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 16/231 (6%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
+ L ++ GE+ GI+G +G+GK+T ++ + + P+
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS------N 72
Query: 1321 SRLSIIPQDP---VMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
+L + P+D ++F+ + NL E + K ++ V + LD
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1377 TENG--ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DC 1432
N S GQ+Q V L R L+K +L+LDE +++D + + +++ S
Sbjct: 133 VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1433 TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS-SFSQLVAE 1481
T+L ++H + +D V +L G + + P +L +N S + L+ E
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGE 243
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 32/218 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEVPKISGTLKLCGTKAYVAQ 688
LK IN+ + G V V G GSGKS+ L C+ GE+ LK A+
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--------AK 70
Query: 689 SPWIQSGKIEDNILFGKEMNRERYNAVLDACSL-----------KKDLEILSFGDQTVIG 737
+ + E ++F + N + VL+ +L K + + + D+ +
Sbjct: 71 DTNLNKVREEVGMVF-QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK 129
Query: 738 ERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
++ +LSGGQ QR+ IARAL + I LFD+P SA+D + +
Sbjct: 130 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 189
Query: 794 TVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLIN 830
T++ VTH++ F D +L M G I + GK DL +
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQ--TLFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
VL+GI+ GE ++G +GSGKST ++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1320 RSRLSIIPQDPVMF-EGTVRSN--LDPLE------ESTDEQIWEALDKCQLGDEVRKKEG 1370
R + ++ Q +F TV +N L P++ E + + E LDK L D+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS 1430
L S GQ Q V + R L KI++ DE T+++D + ++Q +
Sbjct: 138 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1431 D-CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
+ T++ + H + + D VL ++ G I E P +L +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 32/218 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEVPKISGTLKLCGTKAYVAQ 688
LK IN+ + G V V G GSGKS+ L C+ GE+ LK A+
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK--------AK 91
Query: 689 SPWIQSGKIEDNILFGKEMNRERYNAVLDACSL-----------KKDLEILSFGDQTVIG 737
+ + E ++F + N + VL+ +L K + + + D+ +
Sbjct: 92 DTNLNKVREEVGMVF-QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK 150
Query: 738 ERG----INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793
++ +LSGGQ QR+ IARAL + I LFD+P SA+D + +
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210
Query: 794 TVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDLIN 830
T++ VTH++ F D +L M G I + GK DL +
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQ--TLFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
VL+GI+ GE ++G +GSGKST ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1320 RSRLSIIPQDPVMF-EGTVRSN--LDPLE------ESTDEQIWEALDKCQLGDEVRKKEG 1370
R + ++ Q +F TV +N L P++ E + + E LDK L D+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1371 KLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS 1430
L S GQ Q V + R L KI++ DE T+++D + ++Q +
Sbjct: 159 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1431 D-CTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469
+ T++ + H + + D VL ++ G I E P +L +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 36/229 (15%)
Query: 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 691
+ P L DI+L + G + + G G GK++LL C+ G SG + L G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 692 ----------IQSG------KIEDNILFG-------KEMNRERYNAVLDACSLKKDLEIL 728
+Q G + NI +G R+R A+L+ + +
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE----- 130
Query: 729 SFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLG 788
+ G LSGGQ+QR +ARAL D ++ L D+PFSA+D + ++++
Sbjct: 131 ------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 789 LLSS-KTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDLINSGTDF 835
L ++ K+ ++V+H + E L AD I VMK G+I Q ++L D
Sbjct: 185 LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 689
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 690 PW-------IQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILS--FGDQTVIGERG 740
P Q+ + N+ + + N + ++K +E ++ V+
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH---TGSHLFQEV--LLGLLSSKTV 795
LSG Q+QR+ +ARAL +D + L D+PFS +DA + L +EV LG+ T+
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV----TL 194
Query: 796 IYVTHQ-VEFLPAADLILVMKDGKITQAGKYNDLINS 831
+ V+H + AD + V+ GK+ Q GK DL ++
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 16/231 (6%)
Query: 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
+ L ++ GE+ GI+G +G+GK+T ++ + + P+
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS------N 72
Query: 1321 SRLSIIPQDP---VMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKV 1376
+L + P+D ++F+ + NL E + K ++ V + LD
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1377 TENG--ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DC 1432
N S Q+Q V L R L+K +L+LDE +++D + + +++ S
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1433 TVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS-SFSQLVAE 1481
T+L ++H + +D V +L G + + P +L +N S + L+ E
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGE 243
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYV 798
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L K T IYV
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 199
Query: 799 TH-QVEFLPAADLILVMKDGKITQAGKYNDL-INSGTDFME-LVGAHEQALLAL----GS 851
TH QVE + D I VM G++ Q G ++ + + F+ +GA E +L + G
Sbjct: 200 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGY 259
Query: 852 IEGR 855
+EGR
Sbjct: 260 LEGR 263
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVLTIAHR 1440
S GQRQ V + R ++ +L++DE +++D ++ + L+Q T+ +
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ D + ++N G + + +P + +S F
Sbjct: 204 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TVIYV 798
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L K T IYV
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 198
Query: 799 TH-QVEFLPAADLILVMKDGKITQAGKYNDL-INSGTDFME-LVGAHEQALLAL----GS 851
TH QVE + D I VM G++ Q G ++ + + F+ +GA E +L + G
Sbjct: 199 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNILEVSVGDGY 258
Query: 852 IEGR 855
+EGR
Sbjct: 259 LEGR 262
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQHFSDCTVLTIAHR 1440
S GQRQ V + R ++ +L++DE +++D ++ + L+Q T+ +
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ D + ++N G + + +P + +S F
Sbjct: 203 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 22/209 (10%)
Query: 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIE 698
++ +V G VA+ G G GK++ L + G SG + + + G +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 699 DNILFGKEMNR-ERYNAVLDACSLKKD---LEILSFGDQTVIG----ERGINLSGGQKQR 750
N M E L A + KD ++ + +I + LSGGQ+QR
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR 141
Query: 751 IQIARALYQDSDIYLFDDPFSAVDAHTG-------SHLFQEVLLGLLSSKTVIYVTH-QV 802
+ +ARAL + + LFD+P S +DA+ HL QE LG+ S +YVTH Q
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITS----VYVTHDQA 195
Query: 803 EFLPAADLILVMKDGKITQAGKYNDLINS 831
E + A I V GK+ Q G +++ +S
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQ---QTLRQH 1428
LD K T+ S GQ+Q V L R L+K+ K+L+ DE +++D +++ + L+Q
Sbjct: 127 LDRKPTQ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 1429 FSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRSSS 1488
+V + ++ + + + N G + ++ P + ++ + F VA + +
Sbjct: 183 LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF---VASFIGNPPT 239
Query: 1489 SF 1490
+F
Sbjct: 240 NF 241
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.8 bits (146), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 732 DQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791
D+ G+ ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D + + +
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 792 SKTVIYVTHQVEFLP-AADLILVMKDGKITQAG 823
KT++ VTH++ F + ++ + GKI + G
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 37.4 bits (85), Expect = 0.065, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSD--CTVLTIAH 1439
S GQ+Q V + R L +L+ DE T+++D L+ + LR Q ++ T++ + H
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 1440 RITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473
+ S V+ L+ G IEE +P + N S
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAY-------- 685
L++++L + G + V G GSGKS+LL + G + SG + G K Y
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 686 VAQSPWIQ--SGKIEDNILFG-KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
Q P Q + ++ D + F K +R L +KK +E + +
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL----VKKAMEFVGLDFDSFKDRVPFF 140
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG+K+R+ IA + + DI + D+P +D + L + V KTVI ++H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 803 E-FLPAADLILVMKDGK 818
E + D ++V++ GK
Sbjct: 201 ETVINHVDRVVVLEKGK 217
Score = 37.4 bits (85), Expect = 0.065, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1244 GKIDLLDLQVRYAPQMPL---VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300
G+I+++++ + PL L+ +S GE + G TGSGKSTL+Q + ++EP
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1301 A 1301
+
Sbjct: 63 S 63
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 60.1 bits (144), Expect = 9e-09, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAY-------- 685
L++++L + G + V G GSGKS+LL + G + SG + G K Y
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 686 VAQSPWIQ--SGKIEDNILFG-KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
Q P Q + ++ D + F K +R L +KK +E + +
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL----VKKAMEFVGLDFDSFKDRVPFF 138
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG+K+R+ IA + + DI + D+P +D + L + V KTVI ++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 803 E-FLPAADLILVMKDGK 818
E + D ++V++ GK
Sbjct: 199 ETVINHVDRVVVLEKGK 215
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 1254 RYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301
R P L+ +S GE + G TGSGKSTL+Q + ++EP +
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 25/237 (10%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
L +S P G+ G++G +G+GKSTLI+ L R E +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1320 RSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGK 1371
R ++ +I Q ++ TV N+ PLE + ++ E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 133
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHF 1429
DS + N S GQ+Q V + R L K+L+ DEAT+++D AT I + L+
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1430 SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLR 1485
T+L I H + V D V ++++G + E D + + + + +Q + TL
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLH 246
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 79
Query: 695 GKIEDNILFGKEMNRERYNAVLDACSLKKDL-------------EILSF---GDQTVIGE 738
+ + ++F + N V +L +L E+LS GD+
Sbjct: 80 ARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DS 136
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TV 795
NLSGGQKQR+ IARAL + + L D+ SA+D T + + LL ++ + T+
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LLKDINRRLGLTI 194
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQ 821
+ +TH+++ + D + V+ +G++ +
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGELIE 221
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG--------------KIE 698
G G+GKS L I G V G ++L G A + P + G +
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNG--ADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758
NI +G N ER + + L I D+ + LSGG++QR+ +ARAL
Sbjct: 89 RNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALV 142
Query: 759 QDSDIYLFDDPFSAVDAHTGSHLFQEV-LLGLLSSKTVIYVTHQ-VEFLPAADLILVMKD 816
+ L D+P SAVD T L +E+ + +++VTH +E AD + VM +
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 817 GKITQAGKYNDLINS 831
G+I + GK +L ++
Sbjct: 203 GRIVEKGKLKELFSA 217
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 28/219 (12%)
Query: 1278 IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGT- 1336
++G TG+GKS ++ + IV+P R + +PQD +F
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 1337 --------VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388
+R+ + ++ E L L D +K +L S G+R
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD---RKPARL-----------SGGER 132
Query: 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAHR-ITSVI 1445
Q V L R L+ + ++L+LDE ++VD T ++ + LR Q D +L + H I + +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 1446 DSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484
+D V ++ +G I E L K+ ++ ++ L
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 34/227 (14%)
Query: 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--- 683
W + +++++L+V G + + G G GK++ L I G G + + G K
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVA 68
Query: 684 ---------------AYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727
A V QS + + DNI F ++ R+ +D +++ E+
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL-RKVPRQEIDQ-RVREVAEL 126
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-- 785
L G ++ + LSGGQ+QR+ + RA+ + ++L D+P S +DA + E+
Sbjct: 127 L--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 786 ---LLGLLSSKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDL 828
LG+ T IYVTH QVE + D I VM G + Q G +++
Sbjct: 185 LQRQLGV----TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAH-R 1440
S GQRQ V LGR ++++ ++ ++DE +++D ++ L+ Q T + + H +
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ ++ D + ++N G++++ +P + + +++F
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 682
+ D++L + G VA+ G G+GKS+LL + G + G L G T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 683 KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGIN 742
+A + Q + ++ +M R Y D +L+ ++++ D + +R
Sbjct: 87 RAVMRQYSELAFPFSVSEVI---QMGRAPYGGSQDRQALQ---QVMAQTDCLALAQRDYR 140
Query: 743 -LSGGQKQRIQIARALY-----QDSDIYLF-DDPFSAVDAHTGSHLFQEVLLGLLSSK-- 793
LSGG++QR+Q+AR L Q + +LF D+P SA+D + H + LL L+ +
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR--LLRQLTRQEP 198
Query: 794 -TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSGT 833
V V H + AD I+++ GK+ G +++N+ T
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 30/238 (12%)
Query: 1252 QVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXX 1310
+ Y Q ++ +S GE I+G G+GKSTL++ L + P+
Sbjct: 16 HLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75
Query: 1311 XXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLD----PLEESTDEQIWEALDKCQLGDEVR 1366
R+R + + F +V + P S D Q AL + +
Sbjct: 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQ---ALQQVMAQTDCL 132
Query: 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK------RSKILMLDEATASVD----TA 1416
+ D +V GE +Q V L RVL + + L LDE T+++D
Sbjct: 133 ALAQR-DYRVLSGGE------QQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185
Query: 1417 TDNLIQQTLRQH-FSDCTVLTIAHRIT-SVIDSDLVLLLNHGLIEEFDNPANLLENKS 1472
T L++Q RQ + C VL H + + + +D ++LL G + P +L ++
Sbjct: 186 TLRLLRQLTRQEPLAVCCVL---HDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 25/237 (10%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
L +S P G+ G++G +G+GKSTLI+ L R E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1320 RSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGK 1371
R ++ +I Q ++ TV N+ PLE + ++ E L LGD K
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHF 1429
DS + N S GQ+Q V + R L K+L+ D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1430 SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLR 1485
T+L I H + V D V ++++G + E D + + + + +Q + TL
Sbjct: 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLH 269
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 695 GKIEDNILFGKEMN----RERYNAV---LDACSLKKD---------LEILSFGDQTVIGE 738
+ + ++F + N R + V L+ + KD L ++ GD+
Sbjct: 103 ARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DS 159
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TV 795
NLSGGQKQR+ IARAL + + L D SA+D T + + LL ++ + T+
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTI 217
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQ 821
+ +TH+++ + D + V+ +G++ +
Sbjct: 218 LLITHEMDVVKRICDCVAVISNGELIE 244
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----AYVAQSPW 691
LK I+ ++ G + + G G+GK++LL+ + P SGT+ L G Y A++
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 692 IQSGKIEDNILFGKEMNRERYNAVLDACSLKK-------DLEILSFGDQ--TVIGERGIN 742
G + ++L K ER V+ + + K D EI + Q ++G
Sbjct: 97 QHIGFVSHSLL-EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 743 ------LSGGQKQRIQIARALYQDSDIYLFDDPFSAVD--AHTGSHLFQEVLLGLLSSKT 794
LS G+KQR+ IARAL + + D+P + +D A + L +
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 795 VIYVTHQVEFLPAA-DLILVMKDGKITQAGKYNDLINS 831
IYVTH +E + A IL++KDG+ Q G D++ S
Sbjct: 216 XIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 25/237 (10%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQT---LFRIVEPAAXXXXXXXXXXXXXXXXXX 1319
L +S P G+ G++G +G+GKSTLI+ L R E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1320 RSRLSIIPQD-PVMFEGTVRSNLD-PLE------ESTDEQIWEALDKCQLGDEVRKKEGK 1371
R ++ I Q ++ TV N+ PLE + ++ E L LGD K
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1372 LDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHF 1429
DS + N S GQ+Q V + R L K+L+ D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1430 SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLR 1485
T+L I H V D V ++++G + E D + + + + +Q + TL
Sbjct: 213 LGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLH 269
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCGTKAYVAQSPWIQS 694
L +++L V G V G G+GKS+L+ C+ L E P G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 695 GKIEDNILFGKEMN----RERYNAV---LDACSLKKD---------LEILSFGDQTVIGE 738
+ + +F + N R + V L+ + KD L ++ GD+
Sbjct: 103 ARRQIGXIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DS 159
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK---TV 795
NLSGGQKQR+ IARAL + + L D SA+D T + + LL ++ + T+
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTI 217
Query: 796 IYVTHQVEFLPA-ADLILVMKDGKITQ 821
+ +TH+ + + D + V+ +G++ +
Sbjct: 218 LLITHEXDVVKRICDCVAVISNGELIE 244
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA--XXXXXXXXXXXXXXXXXXR 1320
L+GI+ GE T I+G G GKSTL Q I++P++ R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1321 SRLSIIPQDP--VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTE 1378
+ I+ QDP +F +V ++ + A++ DE+RK ++D+ +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS----------FGAVNMKLPEDEIRK---RVDNALKR 130
Query: 1379 NG---------ENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTL--RQ 1427
G S GQ++ V + VL+ K+L+LDE TA +D + I + L Q
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 1428 HFSDCTVLTIAHRITSV-IDSDLVLLLNHGLIEEFDNPANLLENK 1471
T++ H I V + D V ++ G + NP + K
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 675
L + + N+++ +H LK IN+ + G A+ G G GKS+L G + SG
Sbjct: 8 LKVEELNYNYSDGTH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 676 -------------TLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRE-RYNAV-----L 716
+KL + V Q P DN LF + ++ + AV
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDP--------DNQLFSASVYQDVSFGAVNMKLPE 117
Query: 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776
D + D + G + + + LS GQK+R+ IA L + + + D+P + +D
Sbjct: 118 DEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 777 TGSHLFQEVL-----LGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
S + + ++ LG+ T+I TH ++ +P D + VMK+G++ G
Sbjct: 178 GVSEIMKLLVEMQKELGI----TIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 28/205 (13%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK---------- 683
LK I+L V G V++ G GSGKS+LL ILG + P G + L G +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 684 -------AYVAQSPWI--QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT 734
+V Q ++ + +E+ I+ +M + + A L L L GD+
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL---LSELGLGDK- 133
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794
+ + LSGG++QR+ IARAL + + D+P +D+ + L +
Sbjct: 134 -LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 795 VIYVTHQVEFLPAADLILVMKDGKI 819
++ VTH+ E L MKDGK+
Sbjct: 193 IVMVTHERELAELTHRTLEMKDGKV 217
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRS 1321
+L+GIS + GE I+G +GSGKSTL+ L + P
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE----GKVFLEGKEVDYTNEK 74
Query: 1322 RLSIIPQDPVMF---------EGTVRSNL--------DPLEESTDEQIWEALDKCQLGDE 1364
LS++ + F E T N+ P +E+ + + L + LGD+
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY-LLSELGLGDK 133
Query: 1365 VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDNLIQQ 1423
+ +K +L S G++Q V + R L +L DE T ++D+A T ++
Sbjct: 134 LSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 1424 TLRQHFSDCTVLTIAH 1439
L+ + +++ + H
Sbjct: 183 FLKINEGGTSIVMVTH 198
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK----ISGTLKLCGTKAYVAQSPWIQS 694
I+L + A+ G SGKS+++ + +P +SG + G + ++
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 695 GKIEDNILFGKEMNR---------ERYNAVLDACSLK-----------KDLEILSFGDQT 734
+ ++ L + + E + ++A ++ + L ++ +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 735 VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK- 793
V+ + LSGG KQR+ IA AL D + + D+P SA+D T +H+ Q + K
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 794 TVIYVTHQVEFLPA-ADLILVMKDGKITQ 821
T+I+VTH + AD + V+ G + +
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV-----LLGLLSSKTVIY 797
LSGGQ+QR+ + RA+ + ++L D+P S +DA E+ LG+ T IY
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGV----TTIY 198
Query: 798 VTH-QVEFLPAADLILVMKDGKITQAG 823
VTH QVE D I V G++ Q G
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVG 225
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLR--QHFSDCTVLTIAH-R 1440
S GQRQ V LGR +++R K+ + DE +++D + L+ Q T + + H +
Sbjct: 144 SGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQ 203
Query: 1441 ITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSF 1475
+ + D + + N G +++ P + ++F
Sbjct: 204 VEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 112/258 (43%), Gaps = 26/258 (10%)
Query: 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXX 1303
G + + DL+ R + +L+GIS GE G++G G+GK+T ++ + +++P++
Sbjct: 14 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS-G 70
Query: 1304 XXXXXXXXXXXXXXXXRSRLSIIPQDPVMFEGTVRSNLDPLE---------ESTDEQIWE 1354
R +S +P+ E N+ +E S+ +I E
Sbjct: 71 IVTVFGKNVVEEPHEVRKLISYLPE-----EAGAYRNMQGIEYLRFVAGFYASSSSEIEE 125
Query: 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVD 1414
+++ + L K+ + +S G + + + R L+ ++ +LDE T+ +D
Sbjct: 126 MVERA-------TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 1415 TATDNLIQQTLRQHFSD-CTVLTIAHRITSV-IDSDLVLLLNHGLIEEFDNPANLLENKS 1472
+++ L+Q + T+L +H + V D + L+++G I E L E
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
Query: 1473 SSFSQLVAEYTLRSSSSF 1490
+ + V E ++ S +F
Sbjct: 239 AQNIEEVFEEVVKCSENF 256
Score = 37.0 bits (84), Expect = 0.073, Method: Composition-based stats.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695
LK I+ ++ G + G G+GK++ L I + SG + + G V + P
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVEEP----H 84
Query: 696 KIEDNILF-----GKEMNRE-----RYNAVLDACS-------LKKDLEILSFGDQTVIGE 738
++ I + G N + R+ A A S +++ EI G++ I +
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK--IKD 142
Query: 739 RGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL-------FQEVLLGLLS 791
R S G +++ IARAL + + + D+P S +D + QE L L+S
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 792 SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828
S ++ +VEFL D I ++ +G I + G +L
Sbjct: 203 SHNML----EVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675
+ L+I D + +D P L+ I + + G V G G GK++LL I + + G
Sbjct: 9 SKLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 676 TLKLCGT-------KAYVAQSPWIQSGKI--EDNI-----LFGKEMNRERYNAVLDACSL 721
+ G K + I KI ED + L+G ++N+ N ++DA
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDAL-- 119
Query: 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781
+ +E+L + +GE LS G +R+Q+A L +++IY+ DDP A+D + H
Sbjct: 120 -ESVEVLDLKKK--LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS-KHK 171
Query: 782 FQEVLLGLLSSKTVIYVTHQVEF 804
+ +L +L K ++ ++ + E
Sbjct: 172 VLKSILEILKEKGIVIISSREEL 194
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAXXX 1304
K+++ DL V Y VL+ I+ T G G G GK+TL++T+ ++P
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP----- 61
Query: 1305 XXXXXXXXXXXXXXXRSRLSIIPQDPVMFEG-TVRSNLDPLE-----ESTDEQIWEALDK 1358
+ ++ +P++ ++ +V L + + +I +AL+
Sbjct: 62 LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1359 CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD 1418
++ D ++KK G+L S G + V L LL ++I +LD+ ++D +
Sbjct: 122 VEVLD-LKKKLGEL-----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 1419 NLIQQTL--------------RQHFSDCTVLTIAHRITSVID 1446
+ + +++ R+ S C V H+ ++ ID
Sbjct: 170 HKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++ + E +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKA-EYEGTV 420
Query: 702 --LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759
L K ++ + N+ L K L I+ D+ V +LSGG+ QR+ IA L +
Sbjct: 421 YELLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLR 474
Query: 760 DSDIYLFDDPFSAVDAHTG-------SHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
D+DIYL D+P + +D HL ++ + KT + V H V + L
Sbjct: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKTALVVEHDVLMIDYVSDRL 528
Query: 813 VMKDGKITQAGK 824
++ +G+ + G+
Sbjct: 529 IVFEGEPGRHGR 540
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG+ QR+ IA AL + + Y FD+P S +D + + + K V+ V H +
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 803 EFL 805
L
Sbjct: 275 AVL 277
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++ + E +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKA-EYEGTV 434
Query: 702 --LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 759
L K ++ + N+ L K L I+ D+ V +LSGG+ QR+ IA L +
Sbjct: 435 YELLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLR 488
Query: 760 DSDIYLFDDPFSAVDAHTG-------SHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812
D+DIYL D+P + +D HL ++ + KT + V H V + L
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKTALVVEHDVLMIDYVSDRL 542
Query: 813 VMKDGKITQAGK 824
++ +G+ + G+
Sbjct: 543 IVFEGEPGRHGR 554
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG+ QR+ IA AL + + Y FD+P S +D + + + K V+ V H +
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 803 EFL 805
L
Sbjct: 289 AVL 291
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----AYVAQSP 690
+K I+LKV G V + G G+GK++ LS I G V G + G A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 691 WI----QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER----GIN 742
I + +I + + + YN D +K+DLE + F + ER G
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRK-DKEGIKRDLEWI-FSLFPRLKERLKQLGGT 139
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG++Q + I RAL + D+P + S +F EV+ + T I + Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTILLVEQN 198
Query: 803 EF--LPAADLILVMKDGKITQAGKYNDLINS 831
L A V++ G+I GK ++L+++
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDN 229
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 694
+L++INL+V +G +V + G GSGK++LL I G +P SG + + G + ++ S
Sbjct: 20 SLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIRYS 77
Query: 695 GKIEDNILFGKEMNRERYN----AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750
+ + G +N Y LD + L+ L G++ ++ + LS GQ
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEE-ILRRKLYKLSAGQSVL 136
Query: 751 IQIARALYQDSDIYLFDDPFSAVDA---HTGSHLFQEVLLGLLSSKTVIYVTHQVEFL 805
++ + AL +I D+PF VDA H S +E K I VTH+++ L
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILVTHELDML 188
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI 701
++ G + + G G GK++ + + G G ++ T AY Q +I++
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVY 365
Query: 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761
+++ + N+ L K L I+ D+ V LSGG+ QR+ IA L +D+
Sbjct: 366 ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDA 420
Query: 762 DIYLFDDPFSAVDAHTGSHLFQEVL-LGLLSSKTVIYVTHQV 802
DIYL D+P + +D + + + L + KT + V H V
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 643 VFHGMRVAVCGTVGSGKSSLLSCILGE-VPKISGTLKLCGT--------KAYVAQSPWIQ 693
V G V + G G+GKS+ + + G+ +P LCG +A+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPN------LCGDNDSWDGVIRAFRGNELQNY 97
Query: 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQT-------------VIGERG 740
K+++ + + + + +Y ++ K +E+L D+T + ER
Sbjct: 98 FEKLKNGEI--RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLERE 155
Query: 741 I-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVT 799
I +LSGG+ QR+ IA AL +++ Y FD+P S +D + + + K+V+ V
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 800 HQVEFLPA-ADLILVM 814
H + L +D+I V+
Sbjct: 216 HDLAVLDYLSDIIHVV 231
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 641 LKVFHGMRVAVC--------GTVGSGKSSLLSCILGEVPKISGTLKLCG----------- 681
K G+ ++VC G GSGKS+L++ I G + G +
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 682 -----TKAYVAQSPWIQSGKIEDNILFGK------EMNRERYNAVL--DACSLKKDLEIL 728
+ + P ++ + +N+L G+ +N Y + + ++K +IL
Sbjct: 80 YHYGIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 729 SFGDQTVIGERGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
F + + +R LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 788 GLLSSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 824
T + + H+++ L D + VM +G+I G+
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 36/223 (16%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
L G+S + G+ T I+G GSGKSTLI + F +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1321 SRLSIIPQDPVMFEGTVRSNL--------------------DPLEESTDEQIWEALDKCQ 1360
+ + E TV NL P EE E+ ++ L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDN 1419
L +K G+L S GQ +LV +GR L+ K++++DE A V +
Sbjct: 143 LSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEE 1460
+ L T L I HR+ V++ L ++ N +I E
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+G+ LSGG+ QRI++A L + +Y+ D+P + + L ++++ + +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 793 KTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833
TVI V H+++ + A+D +L + G G+ L+ GT
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR---LVAQGT 821
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 614 SETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSL 662
S + D DG F + LKDI++KV V G GSGKSSL
Sbjct: 4 SRPSPDFPDGGFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSL 52
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG+ QR I + Q++D+Y+FD+P S +D + Q + L +K VI V H +
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 803 EFL 805
L
Sbjct: 282 SVL 284
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 653 GTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI--LFGKEMNRE 710
G G+GK++L+ + G + G K V+ P + K + LF K++ +
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 711 RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770
N + K L I DQ V +LSGG+ QR+ I AL +DIYL D+P
Sbjct: 442 FLNPQFQT-DVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 771 SAVDAHTG---SHLFQEVLLGLLSSKTVIYVTHQVEFLPA---ADLILVMK 815
+ +D+ S + + +L + KT V H +F+ A AD ++V +
Sbjct: 496 AYLDSEQRIICSKVIRRFILH--NKKTAFIVEH--DFIMATYLADKVIVFE 542
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 36/223 (16%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
L G+S + G+ T I+G GSGKSTLI + F +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1321 SRLSIIPQDPVMFEGTVRSNL--------------------DPLEESTDEQIWEALDKCQ 1360
+ + E TV NL P EE E+ ++ L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDN 1419
L +K G+L S GQ +LV +GR L+ K++++DE A V +
Sbjct: 143 LSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEE 1460
+ L T L I HR+ V++ L ++ N +I E
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 682 --TKAYVAQSPWIQSGKIEDNILFGK------EMNRERYNAVL--DACSLKKDLEILSFG 731
+ + P ++ + +N+L G+ +N Y + + ++K +IL F
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 732 DQTVIGERGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
+ + +R LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 791 SSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 824
T + + H+++ L D + VM +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 743 LSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802
LSGG QR+ +A +L +++D+Y+FD P S +D ++ + + LL +K VI V H +
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM-AKAIRELLKNKYVIVVDHDL 197
Query: 803 EFLPA-ADLILVM 814
L DLI ++
Sbjct: 198 IVLDYLTDLIHII 210
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776
+LSGG+ Q++ IA L +++D+Y+ D P S +D
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 681
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 682 --TKAYVAQSPWIQSGKIEDNILFGK------EMNRERYNAVL--DACSLKKDLEILSFG 731
+ + P ++ + +N+L G+ +N Y + + ++K +IL F
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 732 DQTVIGERGI-NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790
+ + +R LSGGQ + ++I RAL + + + D P + V +F VL
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 791 SSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 824
T + + H+++ L D + VM +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 36/223 (16%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--FRIVEPAAXXXXXXXXXXXXXXXXXXR 1320
L G+S + G+ T I+G GSGKSTLI + F +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1321 SRLSIIPQDPVMFEGTVRSNL--------------------DPLEESTDEQIWEALDKCQ 1360
+ + E TV NL P EE E+ ++ L+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1361 LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTA-TDN 1419
L +K G+L S GQ +LV +GR L+ K++++D+ A V +
Sbjct: 143 LSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 1420 LIQQTLRQHFSDCTVLTIAHRITSVID--SDLVLLLNHGLIEE 1460
+ L T L I HR+ V++ L ++ N +I E
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L+ I G+V T + C T YV I
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP-TQEECRT-VYVEHD--IDG 506
Query: 695 GKIEDNIL-FGKEMNRERYNAVLDACSLKKDLEILSFG-DQTVIGERGINLSGGQKQRIQ 752
+ ++L F E A+ D +++ FG +I LSGG K ++
Sbjct: 507 THSDTSVLDFVFESGVGTKEAIKD--------KLIEFGFTDEMIAMPISALSGGWKMKLA 558
Query: 753 IARALYQDSDIYLFDDPFSAVD 774
+ARA+ +++DI L D+P + +D
Sbjct: 559 LARAVLRNADILLLDEPTNHLD 580
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 721 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSH 780
+++ +L + V R LSGGQK ++ +A +Q + + D+P + +D +
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS--- 936
Query: 781 LFQEVLLGLLSSK------TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
LG LS VI +TH EF + + +KDG++T +G
Sbjct: 937 ------LGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG---TLKLCGTKAYVAQ 688
P + DIN + R+AV G G+GKS+L++ + GE+ SG T + C AY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI-AYIKQ 743
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDSD---IYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+G+ LSGG+ QR+++A L++ S+ +Y+ D+P + + + L +VL L+ +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 793 -KTVIYVTHQVEFLPAADLIL 812
TV+ + H ++ + AD I+
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDSD---IYLFDDPFSAVDAHTGSHLFQEVLLGLL-S 791
+G+ LSGG+ QR+++A L++ S+ +Y+ D+P + + + L +VL L+ +
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 595
Query: 792 SKTVIYVTHQVEFLPAADLIL 812
TV+ + H ++ + AD I+
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 324 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDSD---IYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+G+ LSGG+ QR+++A L++ S+ +Y+ D+P + + + L +VL L+ +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 793 -KTVIYVTHQVEFLPAADLIL 812
TV+ + H ++ + AD I+
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
DG + + + LK++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L I G+V T + C T YV I
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD--IDG 506
Query: 695 GKIEDNIL-FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
+ ++L F E + V ++K L F D+ + LSGG K ++ +
Sbjct: 507 THSDTSVLDFVFE------SGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKXKLAL 559
Query: 754 ARALYQDSDIYLFDDPFSAVD 774
ARA+ +++DI L D+P + +D
Sbjct: 560 ARAVLRNADILLLDEPTNHLD 580
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG---TLKLCGTKAYVAQ 688
P + DIN + R+AV G G+GKS+L++ + GE+ SG T + C AY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI-AYIKQ 743
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
L + V R LSGGQK ++ +A +Q + + D+P + +D + L
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------L 937
Query: 788 GLLSSK------TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
G LS VI +TH EF + + +KDG+ T +G
Sbjct: 938 GALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 694
L L++ R +CG G GKS+L I G+V T + C T YV I
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD--IDG 500
Query: 695 GKIEDNIL-FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753
+ ++L F E + V ++K L F D+ + LSGG K ++ +
Sbjct: 501 THSDTSVLDFVFE------SGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKXKLAL 553
Query: 754 ARALYQDSDIYLFDDPFSAVD 774
ARA+ +++DI L D+P + +D
Sbjct: 554 ARAVLRNADILLLDEPTNHLD 574
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG---TLKLCGTKAYVAQ 688
P + DIN + R+AV G G+GKS+L++ + GE+ SG T + C AY+ Q
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI-AYIKQ 737
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLL 787
L + V R LSGGQK ++ +A +Q + + D+P + +D + L
Sbjct: 881 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------L 931
Query: 788 GLLSSK------TVIYVTHQVEFLPA-ADLILVMKDGKITQAG 823
G LS VI +TH EF + + +KDG+ T +G
Sbjct: 932 GALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 720 SLKKDLEIL-SFGDQTV-IGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVD 774
S+K+ L++L G V +G+ LSGG+ QRI++A L + +Y+ D+P +
Sbjct: 781 SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840
Query: 775 AHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLIL 812
L EVL L+ TVI + H ++ + AD I+
Sbjct: 841 FEDVRKLV-EVLHRLVDRGNTVIVIEHNLDVIKNADHII 878
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 743 LSGGQKQRIQIARALYQD--SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800
LSGG+ QRI++A + IY+ D+P + L + + TVI V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 801 QVEFLPAADLIL 812
E + AD I+
Sbjct: 525 DEEVIRNADHII 536
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLS- 791
+G+ LSGG+ QR+++A L + S +Y+ D+P + + L V+ GL+
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDK 915
Query: 792 SKTVIYVTHQVEFLPAADLIL 812
TVI + H ++ + +D I+
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 1263 LQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297
L+GI +FP G T + G +GSGKSTL+ + V
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAV 692
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 743 LSGGQKQRIQIARALYQD--SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTH 800
LSGG+ QRI++A + +Y+ D+P + L + + T+I V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 801 QVEFLPAADLILVM------KDGKITQAGKYNDLINS 831
+ + AD I+ + G+I +G Y++L+ +
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 721 LKKDLEILSFGDQTVIGERGINLSGGQK------QRIQIARALYQDS-DIYLFDDPFSAV 773
L KD E+ V+ NLSGG++ R+ IA AL + + + D+P +
Sbjct: 261 LTKDFEVRVHAPNGVLTID--NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYL 318
Query: 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL-VMKDGKITQ 821
D + + L E+ + S +I +TH E AD+I+ V KDG +++
Sbjct: 319 DENRRAKL-AEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSPWIQ 693
L+ ++L V G A+ G GSGKS+L + + G + GT++ G K +A SP +
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLALSPEDR 75
Query: 694 SGK--------------IEDNILFGKEMN---RERYNAVLDACSLKKDLE----ILSFGD 732
+G+ + + +N R LD + +E +L +
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS 792
+ + SGG+K+R I + + ++ + D+ S +D + V
Sbjct: 136 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK 195
Query: 793 KTVIYVTHQVEFLP--AADLILVMKDGKITQAGKY 825
++ I VTH L D + V+ G+I ++G +
Sbjct: 196 RSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL 1293
+L+G+S GE I+G GSGKSTL TL
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 34/219 (15%)
Query: 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQSPWIQ 693
L+ ++L V G A+ G GSGKS+L + + G + GT++ G K +A SP +
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLALSPEDR 94
Query: 694 SGK--------------IEDNILFGKEMN---RERYNAVLDACSLKKDLE----ILSFGD 732
+G+ + + +N R LD + +E +L +
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 733 QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS- 791
+ + SGG+K+R I + + ++ + D+ S +D + V G+ S
Sbjct: 155 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA----LKVVADGVNSL 210
Query: 792 ---SKTVIYVTHQVEFLP--AADLILVMKDGKITQAGKY 825
++ I VTH L D + V+ G+I ++G +
Sbjct: 211 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL 1293
+L+G+S GE I+G GSGKSTL TL
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 645 HGMRVAVCGTVGSGKSSLLSCILGE----VPKISGTLK 678
HGM+V + G +GKSSLL+ + G V I+GT +
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677
L + GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G
Sbjct: 44 LRMRKGNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAA 100
Query: 678 KLCGTKAYVAQSPW 691
K + + + P+
Sbjct: 101 KTGVVEVTMERHPY 114
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G K
Sbjct: 49 GNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105
Query: 683 KAYVAQSPW 691
+ + + P+
Sbjct: 106 EVTMERHPY 114
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G K
Sbjct: 49 GNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105
Query: 683 KAYVAQSPW 691
+ + + P+
Sbjct: 106 EVTMERHPY 114
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 623 GNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682
GN S+ + LK+I+ V + VAV G GSGKSS ++ + G + G K
Sbjct: 49 GNIQLTNSAISDALKEIDSSV---LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105
Query: 683 KAYVAQSPW 691
+ + + P+
Sbjct: 106 EVTMERHPY 114
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 564 TFRLLQVPIYNLPDVISMI--IQTKVSLQRIASFFCL---DDLQP-------DLVEKQPS 611
T L++ PI N+ + + +Q S + F L +D+QP DL+E Q +
Sbjct: 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDT 135
Query: 612 GSSETALDIVDGNFSWDI----SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667
+ A N +D+ S +L DI + F G G GKSSLL+ I
Sbjct: 136 EDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI-IPHFQDKTTVFAGQSGVGKSSLLNAIS 194
Query: 668 GEV 670
E+
Sbjct: 195 PEL 197
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 736 IGERGINLSGGQKQRIQIARALYQDS-------DIYLFDDPFSAVDAHTGSHLFQEVLLG 788
+G LSGG+ QR+++A + Q + + L D P +++D S L + +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKILS 177
Query: 789 LLSSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDLI 829
LS + ++ +H + L A ++K GK+ +G+ +++
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,643,174
Number of Sequences: 62578
Number of extensions: 1699535
Number of successful extensions: 3964
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3504
Number of HSP's gapped (non-prelim): 318
length of query: 1496
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1385
effective length of database: 8,027,179
effective search space: 11117642915
effective search space used: 11117642915
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)