Query 039402
Match_columns 1496
No_of_seqs 787 out of 5702
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-171 8E-176 1748.6 120.3 1233 243-1483 2-1317(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 8E-141 3E-145 1443.4 112.1 1174 298-1486 45-1274(1284)
3 4f4c_A Multidrug resistance pr 100.0 3.2E-79 1.1E-83 838.0 69.8 515 966-1483 137-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.6E-78 5.5E-83 770.8 61.9 571 907-1483 7-579 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 6.3E-79 2.1E-83 776.9 54.8 549 929-1483 41-591 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 9.7E-76 3.3E-80 746.4 70.2 562 912-1482 14-579 (582)
7 3b60_A Lipid A export ATP-bind 100.0 5.4E-76 1.8E-80 748.8 67.6 562 912-1482 14-579 (582)
8 4a82_A Cystic fibrosis transme 100.0 3.6E-76 1.2E-80 749.3 57.7 508 969-1480 65-574 (578)
9 2yl4_A ATP-binding cassette SU 100.0 7.3E-75 2.5E-79 740.2 66.0 549 932-1483 26-584 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 2.5E-76 8.5E-81 807.6 50.6 514 966-1482 109-625 (1284)
11 4a82_A Cystic fibrosis transme 100.0 2E-71 7E-76 705.6 66.3 547 292-840 5-574 (578)
12 3qf4_A ABC transporter, ATP-bi 100.0 4.5E-70 1.5E-74 693.4 68.9 548 291-841 13-577 (587)
13 3qf4_B Uncharacterized ABC tra 100.0 5E-70 1.7E-74 695.0 60.7 543 295-842 31-590 (598)
14 3b5x_A Lipid A export ATP-bind 100.0 2.3E-67 7.8E-72 669.5 74.9 543 292-841 16-578 (582)
15 3b60_A Lipid A export ATP-bind 100.0 1.8E-67 6.1E-72 670.5 71.6 542 293-841 17-578 (582)
16 2yl4_A ATP-binding cassette SU 100.0 5E-67 1.7E-71 668.0 69.5 546 293-841 11-582 (595)
17 2iw3_A Elongation factor 3A; a 100.0 1.4E-59 4.8E-64 609.9 42.6 194 617-829 435-634 (986)
18 3bk7_A ABC transporter ATP-bin 100.0 8.3E-61 2.8E-65 605.3 24.4 199 1244-1469 356-563 (607)
19 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-60 1.1E-64 594.7 25.5 198 1245-1469 287-493 (538)
20 3nh6_A ATP-binding cassette SU 100.0 8.4E-60 2.9E-64 547.8 25.1 276 1204-1484 15-291 (306)
21 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-59 8.6E-64 605.4 29.7 212 1260-1482 335-653 (670)
22 3ozx_A RNAse L inhibitor; ATP 100.0 4E-58 1.4E-62 573.9 23.9 199 1245-1469 269-477 (538)
23 3j16_B RLI1P; ribosome recycli 100.0 4.8E-57 1.7E-61 569.6 27.1 197 1249-1470 350-560 (608)
24 2ff7_A Alpha-hemolysin translo 100.0 3.9E-50 1.3E-54 455.7 30.8 240 1243-1482 5-245 (247)
25 3nh6_A ATP-binding cassette SU 100.0 4.5E-50 1.5E-54 466.1 24.4 261 579-842 15-289 (306)
26 3gd7_A Fusion complex of cysti 100.0 1.2E-49 4E-54 476.5 25.9 242 1235-1477 9-250 (390)
27 2ghi_A Transport protein; mult 100.0 5E-48 1.7E-52 441.7 28.3 237 1244-1482 16-254 (260)
28 1mv5_A LMRA, multidrug resista 100.0 6.5E-49 2.2E-53 445.2 20.7 233 1246-1480 2-236 (243)
29 2ixe_A Antigen peptide transpo 100.0 5.7E-48 1.9E-52 443.6 26.1 239 1243-1482 14-257 (271)
30 3pih_A Uvrabc system protein A 100.0 1.3E-45 4.6E-50 479.8 32.4 220 1244-1480 588-913 (916)
31 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-44 4.1E-49 467.3 38.6 220 1244-1480 501-838 (842)
32 2cbz_A Multidrug resistance-as 100.0 9.8E-46 3.4E-50 417.2 23.1 226 1245-1484 3-231 (237)
33 2pze_A Cystic fibrosis transme 100.0 2.1E-45 7.2E-50 412.5 24.7 222 1243-1478 4-226 (229)
34 2pze_A Cystic fibrosis transme 100.0 2.8E-45 9.4E-50 411.6 24.3 220 616-836 5-224 (229)
35 2cbz_A Multidrug resistance-as 100.0 6.4E-45 2.2E-49 410.5 24.5 222 617-839 3-226 (237)
36 3tui_C Methionine import ATP-b 100.0 6.5E-44 2.2E-48 420.7 24.7 224 1243-1477 22-261 (366)
37 2ff7_A Alpha-hemolysin translo 100.0 4.8E-43 1.6E-47 397.4 29.5 222 616-839 6-242 (247)
38 3gfo_A Cobalt import ATP-bindi 100.0 6.3E-44 2.2E-48 409.6 20.6 214 1245-1470 7-234 (275)
39 3tif_A Uncharacterized ABC tra 100.0 8.9E-44 3.1E-48 400.7 21.2 213 1246-1468 2-233 (235)
40 2ghi_A Transport protein; mult 100.0 8E-43 2.7E-47 398.6 28.8 222 617-840 17-252 (260)
41 1ji0_A ABC transporter; ATP bi 100.0 5.7E-43 2E-47 395.6 22.5 213 1245-1469 6-228 (240)
42 1mv5_A LMRA, multidrug resista 100.0 3.3E-43 1.1E-47 398.4 19.9 217 618-837 2-233 (243)
43 2r6f_A Excinuclease ABC subuni 100.0 2.6E-42 9E-47 444.2 29.7 213 1244-1474 628-947 (972)
44 2olj_A Amino acid ABC transpor 100.0 1.2E-42 4E-47 396.8 23.5 217 1245-1474 24-253 (263)
45 2ixe_A Antigen peptide transpo 100.0 3E-42 1E-46 396.1 26.1 224 616-840 15-255 (271)
46 4g1u_C Hemin import ATP-bindin 100.0 1.7E-42 5.8E-47 396.7 22.1 213 1245-1470 11-238 (266)
47 2bbs_A Cystic fibrosis transme 100.0 9.4E-43 3.2E-47 402.8 19.9 210 1243-1470 38-248 (290)
48 1vpl_A ABC transporter, ATP-bi 100.0 4.9E-42 1.7E-46 390.5 24.7 214 1243-1470 13-236 (256)
49 3fvq_A Fe(3+) IONS import ATP- 100.0 3.5E-42 1.2E-46 406.1 24.1 221 1245-1478 4-237 (359)
50 2ygr_A Uvrabc system protein A 100.0 2.6E-41 8.9E-46 436.6 33.5 213 1244-1474 646-965 (993)
51 2yz2_A Putative ABC transporte 100.0 5.7E-42 2E-46 393.1 24.2 212 1246-1471 3-229 (266)
52 1b0u_A Histidine permease; ABC 100.0 5.5E-42 1.9E-46 392.2 23.8 218 1245-1475 6-248 (262)
53 3rlf_A Maltose/maltodextrin im 100.0 4.5E-42 1.5E-46 407.6 22.9 218 1245-1477 3-231 (381)
54 2bbs_A Cystic fibrosis transme 100.0 3.7E-42 1.3E-46 397.9 20.9 210 616-831 39-248 (290)
55 1g6h_A High-affinity branched- 100.0 7.5E-42 2.6E-46 390.4 22.6 209 1245-1466 7-239 (257)
56 2onk_A Molybdate/tungstate ABC 100.0 6.1E-42 2.1E-46 386.2 20.2 208 1246-1471 2-218 (240)
57 2pcj_A ABC transporter, lipopr 100.0 5.2E-42 1.8E-46 383.6 19.0 206 1245-1463 4-222 (224)
58 2ihy_A ABC transporter, ATP-bi 100.0 7E-42 2.4E-46 394.0 20.0 214 1244-1470 20-253 (279)
59 2yyz_A Sugar ABC transporter, 100.0 2E-41 6.8E-46 401.2 24.0 217 1245-1476 3-230 (359)
60 1z47_A CYSA, putative ABC-tran 100.0 1.3E-41 4.5E-46 401.6 22.3 218 1244-1475 13-241 (355)
61 3gd7_A Fusion complex of cysti 100.0 3E-41 1E-45 403.9 25.6 214 616-832 18-244 (390)
62 2it1_A 362AA long hypothetical 100.0 1.6E-41 5.4E-46 402.4 21.2 217 1245-1476 3-230 (362)
63 3d31_A Sulfate/molybdate ABC t 100.0 2E-41 6.9E-46 400.0 21.9 215 1246-1476 2-224 (348)
64 1v43_A Sugar-binding transport 100.0 4.4E-41 1.5E-45 400.1 24.2 216 1245-1475 11-237 (372)
65 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-41 4.9E-46 402.9 19.5 219 1245-1476 3-237 (353)
66 2qi9_C Vitamin B12 import ATP- 100.0 3.1E-41 1.1E-45 382.3 21.2 207 1245-1469 4-222 (249)
67 2d2e_A SUFC protein; ABC-ATPas 100.0 3.3E-41 1.1E-45 383.5 18.9 208 1245-1465 3-229 (250)
68 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-40 5.9E-45 381.1 23.6 202 616-831 6-234 (275)
69 1g29_1 MALK, maltose transport 100.0 7.8E-41 2.7E-45 398.8 20.8 216 1245-1475 3-235 (372)
70 3tif_A Uncharacterized ABC tra 100.0 9E-41 3.1E-45 376.2 19.5 201 618-828 2-232 (235)
71 2zu0_C Probable ATP-dependent 100.0 1.9E-40 6.6E-45 380.4 20.7 214 1245-1469 20-254 (267)
72 2pjz_A Hypothetical protein ST 100.0 1.8E-40 6.2E-45 378.8 19.7 206 1246-1470 2-216 (263)
73 3tui_C Methionine import ATP-b 100.0 2.4E-40 8.3E-45 390.3 21.0 206 615-832 22-255 (366)
74 3fvq_A Fe(3+) IONS import ATP- 100.0 5.8E-40 2E-44 387.2 24.2 203 617-833 4-231 (359)
75 1ji0_A ABC transporter; ATP bi 100.0 1.2E-39 4E-44 368.5 21.8 201 617-830 6-228 (240)
76 2olj_A Amino acid ABC transpor 100.0 2E-39 6.9E-44 370.1 23.2 201 617-831 24-249 (263)
77 2nq2_C Hypothetical ABC transp 100.0 7.2E-40 2.5E-44 372.5 19.0 200 1245-1470 4-218 (253)
78 3rlf_A Maltose/maltodextrin im 100.0 1.1E-39 3.8E-44 387.2 21.2 202 617-832 3-225 (381)
79 1b0u_A Histidine permease; ABC 100.0 3.6E-39 1.2E-43 368.9 22.9 202 617-831 6-243 (262)
80 1g6h_A High-affinity branched- 100.0 3.3E-39 1.1E-43 368.6 22.5 197 617-827 7-239 (257)
81 2yz2_A Putative ABC transporte 100.0 9.9E-39 3.4E-43 366.3 25.9 204 617-831 2-228 (266)
82 2pcj_A ABC transporter, lipopr 100.0 2.2E-39 7.4E-44 362.5 19.5 194 617-824 4-222 (224)
83 1vpl_A ABC transporter, ATP-bi 100.0 5.9E-39 2E-43 365.1 23.1 201 616-830 14-235 (256)
84 4g1u_C Hemin import ATP-bindin 100.0 4.5E-39 1.5E-43 368.4 21.0 200 616-830 10-237 (266)
85 2yyz_A Sugar ABC transporter, 100.0 7.2E-39 2.5E-43 379.3 22.8 202 617-832 3-225 (359)
86 1z47_A CYSA, putative ABC-tran 100.0 5E-39 1.7E-43 379.6 21.3 204 616-832 13-237 (355)
87 2nq2_C Hypothetical ABC transp 100.0 1.1E-38 3.7E-43 362.8 21.5 200 617-830 4-217 (253)
88 1oxx_K GLCV, glucose, ABC tran 100.0 1E-38 3.6E-43 378.3 21.8 202 617-832 3-232 (353)
89 2it1_A 362AA long hypothetical 100.0 7.3E-39 2.5E-43 379.6 19.7 202 617-832 3-225 (362)
90 1v43_A Sugar-binding transport 100.0 1.4E-38 5E-43 378.4 22.0 202 617-832 11-233 (372)
91 2onk_A Molybdate/tungstate ABC 100.0 1.2E-38 4.1E-43 359.4 20.0 196 618-831 2-217 (240)
92 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-38 3.8E-43 376.6 20.5 200 618-832 2-219 (348)
93 1sgw_A Putative ABC transporte 100.0 3.4E-39 1.1E-43 357.1 14.8 195 1244-1458 9-210 (214)
94 2ihy_A ABC transporter, ATP-bi 100.0 9.3E-39 3.2E-43 368.1 19.1 201 616-830 20-252 (279)
95 1g29_1 MALK, maltose transport 100.0 2.4E-38 8.3E-43 377.3 21.2 202 617-832 3-231 (372)
96 2qi9_C Vitamin B12 import ATP- 100.0 6.2E-38 2.1E-42 355.3 21.9 195 617-830 4-222 (249)
97 2pjz_A Hypothetical protein ST 100.0 1.1E-37 3.6E-42 355.9 20.3 197 618-830 2-215 (263)
98 2d2e_A SUFC protein; ABC-ATPas 100.0 2.9E-37 9.8E-42 351.1 21.9 196 617-826 3-229 (250)
99 2zu0_C Probable ATP-dependent 100.0 3.9E-37 1.3E-41 353.0 20.3 200 616-829 19-253 (267)
100 1sgw_A Putative ABC transporte 100.0 6.6E-37 2.2E-41 338.7 15.5 187 616-819 9-210 (214)
101 2v9p_A Replication protein E1; 100.0 3.7E-36 1.3E-40 348.1 -18.0 217 1195-1482 56-275 (305)
102 1tf7_A KAIC; homohexamer, hexa 100.0 5.8E-33 2E-37 349.2 2.1 169 1247-1457 259-444 (525)
103 3bk7_A ABC transporter ATP-bin 100.0 2.8E-31 9.6E-36 335.8 16.4 199 616-830 356-563 (607)
104 1yqt_A RNAse L inhibitor; ATP- 100.0 2.4E-31 8.3E-36 333.3 15.1 199 616-830 286-493 (538)
105 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-30 6.2E-35 324.5 16.3 198 616-829 268-476 (538)
106 2iw3_A Elongation factor 3A; a 100.0 3.9E-29 1.3E-33 325.3 23.9 196 1244-1469 434-635 (986)
107 3j16_B RLI1P; ribosome recycli 100.0 4.2E-30 1.4E-34 324.4 13.8 197 621-831 350-560 (608)
108 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-29 4.9E-34 327.4 16.0 204 1260-1477 31-306 (670)
109 2v9p_A Replication protein E1; 99.9 7.3E-32 2.5E-36 312.1 -18.1 223 553-828 40-264 (305)
110 4aby_A DNA repair protein RECN 99.9 9.8E-28 3.4E-32 293.6 13.6 200 1262-1462 50-381 (415)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.2E-30 2.4E-34 312.9 -12.3 192 1244-1469 117-338 (460)
112 3pih_A Uvrabc system protein A 99.9 5.1E-26 1.7E-30 296.4 21.7 102 735-836 798-908 (916)
113 2vf7_A UVRA2, excinuclease ABC 99.9 1.9E-25 6.6E-30 288.7 17.1 97 736-832 724-829 (842)
114 2r6f_A Excinuclease ABC subuni 99.9 2.4E-25 8.1E-30 287.2 17.3 101 735-835 838-947 (972)
115 2ygr_A Uvrabc system protein A 99.9 1.2E-24 4E-29 281.9 20.5 101 735-835 856-965 (993)
116 1e69_A Chromosome segregation 99.9 1.7E-24 5.9E-29 255.5 15.4 201 1265-1466 17-310 (322)
117 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.4E-27 2.2E-31 286.8 -7.4 179 637-829 129-337 (460)
118 4aby_A DNA repair protein RECN 99.9 2.6E-24 9.1E-29 263.1 14.6 79 743-822 296-380 (415)
119 3b85_A Phosphate starvation-in 99.9 5.9E-26 2E-30 250.3 -3.8 159 1261-1458 14-172 (208)
120 1z6g_A Guanylate kinase; struc 99.9 2.1E-25 7.1E-30 248.6 -10.8 166 1261-1455 11-193 (218)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.6E-22 1.6E-26 238.3 15.9 82 1379-1460 276-364 (365)
122 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.1E-24 7.3E-29 254.7 -4.9 149 1248-1466 151-300 (330)
123 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.6E-22 5.4E-27 242.3 11.2 85 737-821 274-364 (365)
124 1e69_A Chromosome segregation 99.9 8.5E-22 2.9E-26 232.5 14.3 182 637-820 16-302 (322)
125 4gp7_A Metallophosphoesterase; 99.9 4.7E-23 1.6E-27 220.7 1.6 149 638-811 1-168 (171)
126 1ye8_A Protein THEP1, hypothet 99.9 8.7E-23 3E-27 219.7 3.6 149 1275-1462 2-161 (178)
127 3b85_A Phosphate starvation-in 99.9 8.8E-24 3E-28 232.9 -5.6 140 633-807 13-163 (208)
128 4gp7_A Metallophosphoesterase; 99.8 2.9E-22 1E-26 214.5 5.4 149 1265-1450 1-168 (171)
129 1tq4_A IIGP1, interferon-induc 99.8 1.1E-22 3.9E-27 244.8 -7.0 173 1261-1457 37-255 (413)
130 2dpy_A FLII, flagellum-specifi 99.8 6.9E-23 2.4E-27 249.8 -9.0 195 1244-1469 130-344 (438)
131 1ye8_A Protein THEP1, hypothet 99.8 4.6E-21 1.6E-25 206.2 2.5 139 648-821 2-159 (178)
132 1tq4_A IIGP1, interferon-induc 99.8 3.2E-22 1.1E-26 240.9 -8.6 157 633-804 36-237 (413)
133 1z6g_A Guanylate kinase; struc 99.8 1E-21 3.5E-26 218.7 -9.6 154 634-816 11-193 (218)
134 3sop_A Neuronal-specific septi 99.8 8.9E-21 3E-25 217.5 -2.5 151 1275-1446 4-155 (270)
135 3b9q_A Chloroplast SRP recepto 99.8 7.8E-21 2.7E-25 221.2 -4.2 174 1264-1459 91-285 (302)
136 2o5v_A DNA replication and rep 99.8 7.6E-19 2.6E-23 208.5 10.9 82 1382-1468 265-355 (359)
137 3aez_A Pantothenate kinase; tr 99.8 5.5E-21 1.9E-25 223.5 -7.4 174 1243-1457 41-246 (312)
138 2f1r_A Molybdopterin-guanine d 99.8 5.7E-21 1.9E-25 203.7 -7.3 110 1274-1403 3-124 (171)
139 2i3b_A HCR-ntpase, human cance 99.8 2.1E-20 7.2E-25 202.8 -3.7 173 1273-1481 1-183 (189)
140 2ewv_A Twitching motility prot 99.7 1.8E-21 6.1E-26 233.5 -14.0 176 1260-1443 125-353 (372)
141 1znw_A Guanylate kinase, GMP k 99.7 8.3E-21 2.8E-25 209.6 -8.9 169 1257-1454 6-202 (207)
142 2og2_A Putative signal recogni 99.7 6.4E-20 2.2E-24 217.2 -3.2 173 1265-1459 149-342 (359)
143 2o5v_A DNA replication and rep 99.7 6.3E-18 2.1E-22 200.6 13.7 81 742-828 265-354 (359)
144 2eyu_A Twitching motility prot 99.7 5.5E-19 1.9E-23 201.6 3.5 140 1246-1454 6-146 (261)
145 1lvg_A Guanylate kinase, GMP k 99.7 9.5E-21 3.3E-25 207.7 -12.1 159 1270-1455 1-173 (198)
146 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.8E-19 9.6E-24 211.0 -0.6 131 635-818 160-291 (330)
147 2obl_A ESCN; ATPase, hydrolase 99.7 4E-19 1.4E-23 210.5 0.1 195 1244-1468 44-254 (347)
148 3aez_A Pantothenate kinase; tr 99.7 3.3E-20 1.1E-24 216.9 -9.2 140 615-775 41-209 (312)
149 2dpy_A FLII, flagellum-specifi 99.7 1.4E-19 4.7E-24 220.8 -5.8 181 616-829 130-343 (438)
150 4ad8_A DNA repair protein RECN 99.7 6.7E-18 2.3E-22 211.8 9.1 76 1381-1456 395-473 (517)
151 3sop_A Neuronal-specific septi 99.7 5E-19 1.7E-23 203.0 -1.4 139 648-805 4-153 (270)
152 3qkt_A DNA double-strand break 99.7 7.4E-17 2.5E-21 191.6 16.6 81 738-818 244-332 (339)
153 1tf7_A KAIC; homohexamer, hexa 99.7 3.6E-19 1.2E-23 223.8 -4.0 171 1254-1456 20-210 (525)
154 3b9q_A Chloroplast SRP recepto 99.7 1.6E-18 5.6E-23 201.7 -0.4 161 637-819 91-284 (302)
155 1cr0_A DNA primase/helicase; R 99.7 2.2E-17 7.6E-22 192.4 7.5 181 1261-1458 23-237 (296)
156 2o8b_B DNA mismatch repair pro 99.7 4.3E-17 1.5E-21 216.6 10.0 173 1243-1466 748-939 (1022)
157 2o8b_B DNA mismatch repair pro 99.7 2.7E-17 9.4E-22 218.4 6.7 171 616-825 749-937 (1022)
158 3qkt_A DNA double-strand break 99.7 1.5E-15 5.1E-20 180.3 20.0 75 1380-1454 246-327 (339)
159 2og2_A Putative signal recogni 99.7 3.4E-18 1.2E-22 202.5 -3.6 160 637-818 148-340 (359)
160 1znw_A Guanylate kinase, GMP k 99.7 6.7E-19 2.3E-23 194.4 -9.1 165 632-815 8-202 (207)
161 1lw7_A Transcriptional regulat 99.6 7.6E-18 2.6E-22 202.3 -3.2 147 1262-1410 157-329 (365)
162 2obl_A ESCN; ATPase, hydrolase 99.6 1.9E-17 6.5E-22 196.1 -0.1 193 617-828 45-253 (347)
163 2jeo_A Uridine-cytidine kinase 99.6 2.8E-18 9.6E-23 194.5 -7.1 166 1259-1469 11-187 (245)
164 1pzn_A RAD51, DNA repair and r 99.6 4.2E-17 1.5E-21 194.0 1.6 167 1262-1469 119-315 (349)
165 2ehv_A Hypothetical protein PH 99.6 3.1E-17 1E-21 185.7 0.2 181 1246-1455 7-207 (251)
166 3jvv_A Twitching mobility prot 99.6 9.7E-17 3.3E-21 190.5 4.4 147 1249-1456 92-246 (356)
167 3thx_A DNA mismatch repair pro 99.6 4.6E-16 1.6E-20 204.2 11.1 168 616-828 630-811 (934)
168 1w1w_A Structural maintenance 99.6 1.6E-15 5.3E-20 186.2 14.5 74 1382-1455 333-411 (430)
169 2eyu_A Twitching motility prot 99.6 5.7E-17 2E-21 185.0 1.4 131 634-816 15-147 (261)
170 1pui_A ENGB, probable GTP-bind 99.6 5.5E-17 1.9E-21 178.6 -0.5 171 1245-1430 3-198 (210)
171 4a74_A DNA repair and recombin 99.6 4.7E-16 1.6E-20 173.6 6.7 148 1269-1457 21-201 (231)
172 3asz_A Uridine kinase; cytidin 99.6 4.3E-18 1.5E-22 188.1 -10.1 139 1270-1441 3-161 (211)
173 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.4E-15 8.1E-20 156.2 10.7 82 737-819 52-142 (148)
174 2i3b_A HCR-ntpase, human cance 99.6 3.4E-17 1.2E-21 177.6 -3.6 145 646-823 1-169 (189)
175 1ewq_A DNA mismatch repair pro 99.6 4.7E-16 1.6E-20 200.7 4.6 146 1243-1447 548-704 (765)
176 3szr_A Interferon-induced GTP- 99.6 2.4E-17 8.1E-22 209.8 -7.9 190 1245-1468 10-236 (608)
177 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 5.5E-15 1.9E-19 153.5 11.2 87 1371-1457 41-141 (148)
178 3thx_A DNA mismatch repair pro 99.6 3.4E-15 1.2E-19 195.9 11.8 167 1243-1467 629-811 (934)
179 1ewq_A DNA mismatch repair pro 99.6 6.9E-16 2.3E-20 199.2 5.0 144 616-808 549-704 (765)
180 1cr0_A DNA primase/helicase; R 99.6 4.2E-15 1.4E-19 173.1 10.6 169 633-819 22-237 (296)
181 2gza_A Type IV secretion syste 99.6 2.5E-17 8.4E-22 197.0 -9.1 147 1247-1395 137-300 (361)
182 4a74_A DNA repair and recombin 99.5 1.9E-15 6.5E-20 168.7 5.6 141 642-817 21-200 (231)
183 2jeo_A Uridine-cytidine kinase 99.5 1.6E-16 5.5E-21 180.0 -3.4 163 631-829 10-186 (245)
184 3thx_B DNA mismatch repair pro 99.5 1.9E-15 6.5E-20 197.7 4.9 144 632-811 659-805 (918)
185 3asz_A Uridine kinase; cytidin 99.5 9.3E-17 3.2E-21 177.4 -6.7 140 643-802 3-161 (211)
186 2qag_C Septin-7; cell cycle, c 99.5 9.8E-16 3.3E-20 185.2 1.3 166 1244-1444 10-180 (418)
187 1w1w_A Structural maintenance 99.5 4.4E-14 1.5E-18 173.3 15.7 74 741-815 332-410 (430)
188 1rj9_A FTSY, signal recognitio 99.5 4.1E-15 1.4E-19 173.0 4.8 163 1272-1457 101-284 (304)
189 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.8E-20 178.2 -0.9 163 1249-1443 2-169 (301)
190 3kta_B Chromosome segregation 99.5 6.9E-14 2.3E-18 149.0 11.2 79 1380-1458 62-146 (173)
191 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.1E-14 3.9E-19 162.5 5.3 165 1261-1457 10-193 (235)
192 2w0m_A SSO2452; RECA, SSPF, un 99.5 2.8E-14 9.7E-19 159.2 8.4 160 633-817 9-192 (235)
193 1pzn_A RAD51, DNA repair and r 99.5 6.9E-15 2.4E-19 174.9 3.4 156 634-824 118-309 (349)
194 2ewv_A Twitching motility prot 99.5 6.4E-17 2.2E-21 194.0 -14.4 167 634-804 126-353 (372)
195 2ehv_A Hypothetical protein PH 99.5 1.2E-14 4E-19 164.5 4.2 159 642-816 26-207 (251)
196 1s96_A Guanylate kinase, GMP k 99.5 9.7E-15 3.3E-19 162.1 2.7 140 1268-1469 11-160 (219)
197 2qag_B Septin-6, protein NEDD5 99.4 3E-14 1E-18 171.3 4.8 179 1245-1439 16-217 (427)
198 2f1r_A Molybdopterin-guanine d 99.4 1E-15 3.5E-20 163.1 -7.0 98 647-764 3-125 (171)
199 3jvv_A Twitching mobility prot 99.4 1.7E-14 5.8E-19 171.3 2.4 146 622-817 93-246 (356)
200 2qnr_A Septin-2, protein NEDD5 99.4 8.9E-15 3E-19 170.6 -0.6 150 622-803 3-168 (301)
201 1pui_A ENGB, probable GTP-bind 99.4 7.9E-15 2.7E-19 161.2 -2.7 161 618-793 4-201 (210)
202 1wb9_A DNA mismatch repair pro 99.4 5.4E-14 1.9E-18 182.7 4.6 150 632-822 594-750 (800)
203 1odf_A YGR205W, hypothetical 3 99.4 1E-15 3.4E-20 177.1 -10.5 128 1272-1417 30-169 (290)
204 3kta_B Chromosome segregation 99.4 4.1E-13 1.4E-17 143.0 10.0 81 738-819 60-146 (173)
205 3thx_B DNA mismatch repair pro 99.4 1.5E-13 5.2E-18 179.8 7.5 158 1244-1449 639-804 (918)
206 3c8u_A Fructokinase; YP_612366 99.4 2.6E-16 8.8E-21 173.7 -15.9 131 1270-1428 19-169 (208)
207 1rj9_A FTSY, signal recognitio 99.4 1.5E-13 5E-18 160.0 6.4 139 644-804 100-260 (304)
208 2cvh_A DNA repair and recombin 99.4 1.1E-13 3.9E-18 153.2 5.0 149 1261-1456 7-185 (220)
209 1nij_A Hypothetical protein YJ 99.4 7.2E-15 2.5E-19 172.8 -5.7 149 1274-1441 5-189 (318)
210 1nlf_A Regulatory protein REPA 99.4 3.9E-13 1.3E-17 155.1 8.7 146 642-805 26-184 (279)
211 2qag_C Septin-7; cell cycle, c 99.4 5.7E-14 1.9E-18 169.8 0.6 155 617-805 11-180 (418)
212 1lw7_A Transcriptional regulat 99.4 3.6E-15 1.2E-19 179.0 -10.4 71 635-705 157-248 (365)
213 1odf_A YGR205W, hypothetical 3 99.4 6.7E-15 2.3E-19 170.3 -8.3 128 645-777 30-169 (290)
214 1n0w_A DNA repair protein RAD5 99.4 7E-13 2.4E-17 149.1 8.1 146 1269-1456 20-209 (243)
215 1nlf_A Regulatory protein REPA 99.3 7.5E-13 2.6E-17 152.8 8.1 151 1269-1444 26-184 (279)
216 1wb9_A DNA mismatch repair pro 99.3 2.9E-13 9.8E-18 175.9 4.6 165 1244-1461 576-750 (800)
217 3szr_A Interferon-induced GTP- 99.3 1.3E-14 4.4E-19 184.7 -8.0 175 617-827 10-234 (608)
218 1zp6_A Hypothetical protein AT 99.3 6.6E-14 2.3E-18 151.8 -1.8 138 1269-1427 5-146 (191)
219 2qm8_A GTPase/ATPase; G protei 99.3 7.2E-15 2.4E-19 173.9 -10.6 175 1246-1429 30-259 (337)
220 2qag_B Septin-6, protein NEDD5 99.3 4.9E-13 1.7E-17 160.8 2.6 172 618-800 17-217 (427)
221 4ad8_A DNA repair protein RECN 99.3 3.1E-12 1.1E-16 160.4 7.8 78 739-817 393-473 (517)
222 1s96_A Guanylate kinase, GMP k 99.3 2.9E-13 1E-17 150.2 -1.5 133 641-829 11-159 (219)
223 1lvg_A Guanylate kinase, GMP k 99.2 2.2E-14 7.7E-19 157.0 -11.4 148 644-816 2-173 (198)
224 2cvh_A DNA repair and recombin 99.2 2.1E-11 7.3E-16 134.8 12.3 149 634-817 7-185 (220)
225 2yhs_A FTSY, cell division pro 99.2 5.1E-12 1.7E-16 153.6 7.1 149 1264-1439 284-447 (503)
226 2oap_1 GSPE-2, type II secreti 99.2 3.2E-14 1.1E-18 176.6 -13.1 173 1260-1448 247-458 (511)
227 1sxj_E Activator 1 40 kDa subu 99.2 7.8E-12 2.7E-16 149.0 6.4 140 1275-1445 38-178 (354)
228 2bdt_A BH3686; alpha-beta prot 99.2 2.5E-14 8.7E-19 155.0 -14.2 166 1273-1468 2-183 (189)
229 3c8u_A Fructokinase; YP_612366 99.2 1E-13 3.5E-18 152.9 -10.3 113 643-770 19-140 (208)
230 1htw_A HI0065; nucleotide-bind 99.2 3.2E-13 1.1E-17 142.0 -6.3 86 1249-1342 11-96 (158)
231 1zp6_A Hypothetical protein AT 99.2 6.4E-13 2.2E-17 144.0 -4.5 123 642-783 5-142 (191)
232 3auy_A DNA double-strand break 99.1 7.4E-11 2.5E-15 141.7 11.3 75 1381-1455 279-360 (371)
233 3e70_C DPA, signal recognition 99.1 3E-11 1E-15 141.9 7.6 166 1269-1459 125-307 (328)
234 3lda_A DNA repair protein RAD5 99.1 4.3E-11 1.5E-15 144.1 8.4 147 1269-1457 174-364 (400)
235 2rcn_A Probable GTPase ENGC; Y 99.1 1.3E-11 4.5E-16 145.6 3.8 117 1262-1397 205-328 (358)
236 1p9r_A General secretion pathw 99.1 2.7E-13 9.3E-18 164.1 -11.4 141 1246-1405 144-314 (418)
237 1n0w_A DNA repair protein RAD5 99.1 9E-11 3.1E-15 131.8 9.4 145 642-817 20-209 (243)
238 2gza_A Type IV secretion syste 99.1 4.7E-12 1.6E-16 151.3 -1.5 199 551-756 63-301 (361)
239 2bdt_A BH3686; alpha-beta prot 99.1 9.2E-14 3.2E-18 150.6 -15.9 155 646-828 2-182 (189)
240 3auy_A DNA double-strand break 99.1 1.7E-10 6E-15 138.4 9.8 75 740-815 278-359 (371)
241 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.9E-15 121.4 6.7 92 1262-1441 30-125 (149)
242 2bbw_A Adenylate kinase 4, AK4 99.0 4.7E-12 1.6E-16 143.3 -5.4 145 1272-1429 26-197 (246)
243 1nij_A Hypothetical protein YJ 99.0 9.3E-12 3.2E-16 146.3 -3.5 143 646-803 4-190 (318)
244 1htw_A HI0065; nucleotide-bind 99.0 2E-11 6.8E-16 128.3 -1.5 71 633-704 20-99 (158)
245 1udx_A The GTP-binding protein 99.0 1.9E-10 6.4E-15 139.1 6.1 148 636-801 147-307 (416)
246 2rcn_A Probable GTPase ENGC; Y 99.0 2.4E-10 8.2E-15 134.9 5.3 113 634-757 204-328 (358)
247 2bbw_A Adenylate kinase 4, AK4 99.0 1.6E-11 5.4E-16 138.9 -4.9 132 645-785 26-193 (246)
248 3ec2_A DNA replication protein 99.0 8.1E-10 2.8E-14 118.5 8.7 112 1267-1443 32-145 (180)
249 1udx_A The GTP-binding protein 99.0 1.3E-10 4.4E-15 140.5 2.1 153 1262-1439 146-306 (416)
250 3ec2_A DNA replication protein 98.9 6.1E-10 2.1E-14 119.4 7.0 111 640-803 32-144 (180)
251 2x8a_A Nuclear valosin-contain 98.9 4.3E-12 1.5E-16 145.9 -10.5 129 1260-1411 33-164 (274)
252 2yv5_A YJEQ protein; hydrolase 98.9 1.8E-10 6E-15 134.3 2.0 113 1269-1395 161-300 (302)
253 2yhs_A FTSY, cell division pro 98.9 8E-10 2.7E-14 134.5 7.5 140 637-800 284-447 (503)
254 2kjq_A DNAA-related protein; s 98.9 9.8E-10 3.4E-14 114.3 7.1 93 635-801 30-124 (149)
255 3lnc_A Guanylate kinase, GMP k 98.9 2.8E-12 9.6E-17 143.6 -13.2 146 1262-1428 16-176 (231)
256 2oap_1 GSPE-2, type II secreti 98.9 5.6E-12 1.9E-16 156.5 -12.1 161 634-807 248-455 (511)
257 3lda_A DNA repair protein RAD5 98.9 1.8E-09 6E-14 130.0 8.8 150 642-817 174-363 (400)
258 1ls1_A Signal recognition part 98.9 1.3E-09 4.3E-14 126.5 6.6 142 1246-1438 77-219 (295)
259 1cke_A CK, MSSA, protein (cyti 98.9 6.7E-11 2.3E-15 131.7 -4.4 128 1273-1411 5-151 (227)
260 1p9r_A General secretion pathw 98.9 3.9E-11 1.3E-15 145.3 -7.0 115 635-766 158-315 (418)
261 1sq5_A Pantothenate kinase; P- 98.8 8.8E-11 3E-15 137.4 -4.5 90 1243-1341 35-149 (308)
262 2qm8_A GTPase/ATPase; G protei 98.8 9E-11 3.1E-15 138.8 -4.7 150 633-786 42-256 (337)
263 3tr0_A Guanylate kinase, GMP k 98.8 8E-10 2.7E-14 120.8 2.5 119 1267-1409 1-127 (205)
264 1u0l_A Probable GTPase ENGC; p 98.8 1.2E-09 4.3E-14 127.1 4.2 102 1268-1370 164-290 (301)
265 3e70_C DPA, signal recognition 98.8 4.4E-09 1.5E-13 123.5 6.6 133 643-801 126-278 (328)
266 1sxj_E Activator 1 40 kDa subu 98.8 8.2E-09 2.8E-13 122.8 8.7 127 648-805 38-177 (354)
267 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 3.2E-11 1.1E-15 144.3 -12.3 170 1269-1465 16-209 (392)
268 3euj_A Chromosome partition pr 98.8 3.4E-09 1.2E-13 129.6 4.9 79 1247-1330 8-94 (483)
269 1vma_A Cell division protein F 98.8 1.3E-08 4.3E-13 118.4 9.5 98 1266-1411 97-197 (306)
270 4e22_A Cytidylate kinase; P-lo 98.7 1.8E-09 6.1E-14 122.6 1.0 103 1262-1373 19-139 (252)
271 2yv5_A YJEQ protein; hydrolase 98.7 3.5E-09 1.2E-13 123.3 3.2 102 642-755 161-300 (302)
272 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.3E-10 4.5E-15 139.0 -9.8 157 642-825 16-208 (392)
273 2px0_A Flagellar biosynthesis 98.7 1.2E-08 4.2E-13 118.2 6.3 138 1271-1460 103-246 (296)
274 2x8a_A Nuclear valosin-contain 98.6 8.1E-11 2.8E-15 135.3 -13.2 129 634-784 34-189 (274)
275 1oix_A RAS-related protein RAB 98.6 1.9E-09 6.7E-14 116.7 -2.1 140 1275-1428 31-189 (191)
276 1t9h_A YLOQ, probable GTPase E 98.6 4.5E-09 1.5E-13 121.9 0.1 94 1269-1364 169-288 (307)
277 2dy1_A Elongation factor G; tr 98.6 3.3E-08 1.1E-12 127.1 7.1 94 1267-1361 3-100 (665)
278 1in4_A RUVB, holliday junction 98.6 1.4E-10 4.8E-15 137.3 -15.2 151 1246-1428 19-192 (334)
279 2ius_A DNA translocase FTSK; n 98.5 3.4E-09 1.2E-13 130.5 -3.9 162 1265-1442 159-343 (512)
280 2dr3_A UPF0273 protein PH0284; 98.5 6.4E-07 2.2E-11 100.4 14.7 166 1262-1455 11-196 (247)
281 2zr9_A Protein RECA, recombina 98.5 1.8E-07 6.2E-12 110.9 10.0 143 1269-1463 57-237 (349)
282 3a00_A Guanylate kinase, GMP k 98.5 2.9E-08 9.8E-13 107.1 2.4 128 1273-1408 1-169 (186)
283 1vma_A Cell division protein F 98.5 5.9E-08 2E-12 112.8 4.8 108 640-785 98-208 (306)
284 1iy2_A ATP-dependent metallopr 98.5 5.2E-10 1.8E-14 128.8 -12.8 136 1247-1410 51-195 (278)
285 2px0_A Flagellar biosynthesis 98.5 9.7E-08 3.3E-12 110.7 6.2 138 644-821 103-246 (296)
286 2dr3_A UPF0273 protein PH0284; 98.5 6.5E-07 2.2E-11 100.3 12.8 170 633-816 9-196 (247)
287 2r6a_A DNAB helicase, replicat 98.5 9.1E-08 3.1E-12 117.9 6.2 171 1261-1459 191-402 (454)
288 1t9h_A YLOQ, probable GTPase E 98.5 1.7E-08 5.9E-13 117.0 -0.5 61 641-702 168-248 (307)
289 1sq5_A Pantothenate kinase; P- 98.5 5.9E-09 2E-13 121.9 -4.5 61 616-681 36-120 (308)
290 1ls1_A Signal recognition part 98.5 2.9E-07 9.9E-12 106.7 9.7 112 637-782 91-203 (295)
291 1qhl_A Protein (cell division 98.4 7.4E-09 2.5E-13 115.0 -3.9 75 1245-1329 9-91 (227)
292 3euj_A Chromosome partition pr 98.4 6.7E-08 2.3E-12 118.2 2.6 48 634-682 18-65 (483)
293 1u0l_A Probable GTPase ENGC; p 98.4 9.1E-08 3.1E-12 111.4 3.0 81 641-722 164-281 (301)
294 3ney_A 55 kDa erythrocyte memb 98.4 8.6E-08 2.9E-12 103.9 2.5 81 1270-1358 16-109 (197)
295 3k1j_A LON protease, ATP-depen 98.4 1.4E-07 4.7E-12 120.5 4.7 156 1260-1427 47-227 (604)
296 1ixz_A ATP-dependent metallopr 98.4 6E-10 2.1E-14 126.4 -15.5 138 1246-1411 26-172 (254)
297 1kgd_A CASK, peripheral plasma 98.4 7.8E-08 2.7E-12 103.1 1.6 81 1271-1357 3-94 (180)
298 2r6a_A DNAB helicase, replicat 98.3 6E-07 2E-11 110.6 8.3 168 633-819 190-401 (454)
299 3tr0_A Guanylate kinase, GMP k 98.3 1.4E-07 4.7E-12 102.9 1.3 59 640-702 1-73 (205)
300 1svm_A Large T antigen; AAA+ f 98.3 9E-09 3.1E-13 122.8 -9.2 137 1260-1411 156-312 (377)
301 2qt1_A Nicotinamide riboside k 98.3 1.5E-07 5.1E-12 103.1 1.1 52 1265-1342 13-64 (207)
302 1oix_A RAS-related protein RAB 98.2 4.1E-07 1.4E-11 98.3 3.9 134 648-787 31-188 (191)
303 1iy2_A ATP-dependent metallopr 98.2 4.5E-09 1.6E-13 120.9 -12.8 107 633-763 62-190 (278)
304 2f9l_A RAB11B, member RAS onco 98.2 2.8E-07 9.7E-12 100.1 2.0 135 1275-1428 7-165 (199)
305 2zr9_A Protein RECA, recombina 98.2 3E-06 1E-10 100.5 10.3 144 642-823 57-236 (349)
306 1ixz_A ATP-dependent metallopr 98.2 6.9E-09 2.4E-13 117.6 -13.1 112 633-770 38-171 (254)
307 3lnc_A Guanylate kinase, GMP k 98.1 3E-07 1E-11 102.6 0.3 40 633-672 14-54 (231)
308 3k1j_A LON protease, ATP-depen 98.1 4.4E-07 1.5E-11 115.8 1.2 143 633-783 47-223 (604)
309 1in4_A RUVB, holliday junction 98.1 2.3E-08 8E-13 118.2 -10.1 69 633-702 31-123 (334)
310 3a00_A Guanylate kinase, GMP k 98.1 9.3E-07 3.2E-11 95.2 2.6 117 646-768 1-169 (186)
311 2qtf_A Protein HFLX, GTP-bindi 98.1 3.1E-06 1.1E-10 100.9 6.4 138 1275-1429 181-352 (364)
312 2j41_A Guanylate kinase; GMP, 98.0 9.2E-07 3.2E-11 96.4 1.5 85 1268-1358 1-96 (207)
313 3kta_A Chromosome segregation 98.0 1.5E-06 5E-11 93.0 2.9 38 637-675 18-55 (182)
314 1cke_A CK, MSSA, protein (cyti 98.0 1.5E-07 5.3E-12 104.3 -5.1 115 645-770 4-150 (227)
315 2ce7_A Cell division protein F 98.0 8.1E-06 2.8E-10 100.2 9.6 115 1260-1444 38-167 (476)
316 1svm_A Large T antigen; AAA+ f 98.0 2.9E-08 9.9E-13 118.5 -12.2 128 634-771 157-312 (377)
317 3nwj_A ATSK2; P loop, shikimat 98.0 6.4E-07 2.2E-11 101.1 -0.7 52 1245-1297 17-72 (250)
318 3kta_A Chromosome segregation 98.0 1.6E-06 5.5E-11 92.7 2.3 98 1264-1362 18-136 (182)
319 4eun_A Thermoresistant glucoki 98.0 1E-06 3.5E-11 96.0 0.7 61 1267-1333 23-84 (200)
320 2ius_A DNA translocase FTSK; n 98.0 1E-06 3.5E-11 108.6 0.6 157 638-803 159-343 (512)
321 1zu4_A FTSY; GTPase, signal re 98.0 1.6E-06 5.6E-11 101.3 1.9 68 1262-1329 94-171 (320)
322 2qtf_A Protein HFLX, GTP-bindi 97.9 7.9E-06 2.7E-10 97.3 7.1 134 648-787 181-350 (364)
323 2f9l_A RAB11B, member RAS onco 97.9 1.3E-05 4.5E-10 86.8 8.1 37 751-789 130-166 (199)
324 2ce7_A Cell division protein F 97.9 1.2E-05 4E-10 98.8 7.9 114 635-806 40-168 (476)
325 3t34_A Dynamin-related protein 97.9 5.4E-06 1.8E-10 98.9 4.7 46 1261-1309 25-72 (360)
326 3uie_A Adenylyl-sulfate kinase 97.9 7.8E-07 2.7E-11 96.9 -3.1 51 1261-1312 13-65 (200)
327 3t34_A Dynamin-related protein 97.9 2.2E-05 7.7E-10 93.5 9.2 46 633-681 24-71 (360)
328 2dhr_A FTSH; AAA+ protein, hex 97.9 6.6E-07 2.3E-11 110.5 -4.2 137 1247-1411 42-187 (499)
329 2xau_A PRE-mRNA-splicing facto 97.9 5.7E-06 1.9E-10 108.1 4.2 145 643-806 106-256 (773)
330 2e87_A Hypothetical protein PH 97.8 2.4E-05 8.1E-10 93.2 7.9 124 1274-1443 168-294 (357)
331 2z43_A DNA repair and recombin 97.8 1.6E-05 5.4E-10 93.5 6.2 41 1269-1309 103-150 (324)
332 4a1f_A DNAB helicase, replicat 97.8 2.3E-05 7.8E-10 92.0 7.6 108 634-774 34-141 (338)
333 3tau_A Guanylate kinase, GMP k 97.8 5.4E-06 1.8E-10 90.9 1.7 81 1271-1357 6-97 (208)
334 2vp4_A Deoxynucleoside kinase; 97.8 1.3E-06 4.6E-11 97.4 -3.2 65 1266-1334 13-87 (230)
335 3hr8_A Protein RECA; alpha and 97.8 3.1E-05 1.1E-09 91.5 8.3 60 1269-1331 57-117 (356)
336 2ffh_A Protein (FFH); SRP54, s 97.8 3.1E-05 1.1E-09 93.5 8.1 160 1248-1439 79-246 (425)
337 4e22_A Cytidylate kinase; P-lo 97.7 2.7E-06 9.2E-11 96.3 -2.2 59 644-702 25-114 (252)
338 3uie_A Adenylyl-sulfate kinase 97.7 6.7E-06 2.3E-10 89.5 1.0 55 625-681 5-61 (200)
339 3vaa_A Shikimate kinase, SK; s 97.7 1.5E-05 5.1E-10 86.7 2.9 38 1260-1297 12-49 (199)
340 3vaa_A Shikimate kinase, SK; s 97.7 1.6E-05 5.6E-10 86.3 3.2 44 627-670 6-49 (199)
341 1qhl_A Protein (cell division 97.7 1.5E-06 5E-11 96.6 -5.3 42 640-682 22-63 (227)
342 3nwj_A ATSK2; P loop, shikimat 97.7 3.8E-06 1.3E-10 94.8 -2.0 52 617-670 17-72 (250)
343 2xau_A PRE-mRNA-splicing facto 97.6 1.6E-05 5.5E-10 103.8 3.5 65 1382-1446 190-257 (773)
344 1jjv_A Dephospho-COA kinase; P 97.6 1.7E-05 5.8E-10 86.5 2.9 126 1275-1455 4-132 (206)
345 1jjv_A Dephospho-COA kinase; P 97.6 3.3E-05 1.1E-09 84.2 5.1 125 648-815 4-131 (206)
346 3ice_A Transcription terminati 97.6 9.4E-06 3.2E-10 95.2 0.7 55 1243-1298 131-199 (422)
347 2qt1_A Nicotinamide riboside k 97.6 1.3E-05 4.4E-10 87.6 1.8 49 642-703 17-65 (207)
348 3ney_A 55 kDa erythrocyte memb 97.6 5.4E-06 1.8E-10 89.8 -1.4 73 640-717 13-108 (197)
349 2e87_A Hypothetical protein PH 97.6 0.00021 7.2E-09 85.0 12.3 62 739-802 228-290 (357)
350 2dy1_A Elongation factor G; tr 97.6 2E-05 6.9E-10 101.3 2.8 38 640-677 3-42 (665)
351 3kl4_A SRP54, signal recogniti 97.5 7.5E-05 2.6E-09 90.4 6.7 43 1272-1314 96-138 (433)
352 3cr8_A Sulfate adenylyltranfer 97.5 6.1E-06 2.1E-10 103.1 -3.2 87 1269-1360 365-468 (552)
353 2j41_A Guanylate kinase; GMP, 97.5 4.1E-05 1.4E-09 83.2 3.7 35 641-675 1-35 (207)
354 3tqc_A Pantothenate kinase; bi 97.5 8.3E-07 2.8E-11 103.5 -10.5 124 634-775 74-211 (321)
355 3m6a_A ATP-dependent protease 97.5 3.2E-05 1.1E-09 97.2 2.4 59 1248-1309 86-144 (543)
356 2dhr_A FTSH; AAA+ protein, hex 97.5 3E-06 1E-10 104.7 -6.9 113 634-772 54-188 (499)
357 1rz3_A Hypothetical protein rb 97.4 3.9E-05 1.3E-09 83.5 2.5 48 1270-1317 19-66 (201)
358 3hr8_A Protein RECA; alpha and 97.4 0.00066 2.3E-08 80.1 12.8 34 643-676 58-91 (356)
359 1knq_A Gluconate kinase; ALFA/ 97.4 5.4E-05 1.9E-09 80.1 2.5 53 1271-1329 6-59 (175)
360 4a1f_A DNAB helicase, replicat 97.3 0.00021 7.1E-09 83.8 7.3 45 1262-1306 35-79 (338)
361 1kgd_A CASK, peripheral plasma 97.3 5.4E-05 1.9E-09 80.8 2.2 34 644-677 3-37 (180)
362 3bh0_A DNAB-like replicative h 97.3 0.0003 1E-08 82.1 8.7 110 633-773 55-164 (315)
363 4eun_A Thermoresistant glucoki 97.3 7.5E-05 2.6E-09 81.1 2.4 37 641-681 24-60 (200)
364 1v5w_A DMC1, meiotic recombina 97.3 0.00013 4.3E-09 86.4 4.3 42 1269-1310 118-166 (343)
365 3tqc_A Pantothenate kinase; bi 97.2 5.6E-05 1.9E-09 88.1 0.9 47 1261-1307 74-128 (321)
366 1sxj_C Activator 1 40 kDa subu 97.2 6.3E-05 2.1E-09 88.8 1.4 45 1260-1304 31-77 (340)
367 1fnn_A CDC6P, cell division co 97.2 0.00054 1.8E-08 81.8 9.2 43 1399-1442 124-170 (389)
368 2z43_A DNA repair and recombin 97.2 0.0014 4.7E-08 76.9 11.8 108 642-775 103-218 (324)
369 1fnn_A CDC6P, cell division co 97.2 0.0006 2E-08 81.4 8.7 30 645-674 41-72 (389)
370 3llm_A ATP-dependent RNA helic 97.1 0.00037 1.3E-08 77.6 6.2 131 1270-1432 73-209 (235)
371 2z4s_A Chromosomal replication 97.1 0.00014 4.9E-09 88.9 3.1 67 1400-1466 194-265 (440)
372 3lxx_A GTPase IMAP family memb 97.1 0.002 6.9E-08 71.7 11.7 28 648-675 31-58 (239)
373 1ega_A Protein (GTP-binding pr 97.1 0.00044 1.5E-08 80.2 6.5 147 1272-1446 7-164 (301)
374 1f6b_A SAR1; gtpases, N-termin 97.1 0.00012 4.1E-09 79.2 1.5 56 1253-1310 7-70 (198)
375 2pez_A Bifunctional 3'-phospho 97.1 8E-05 2.7E-09 79.2 -0.2 41 1271-1312 3-45 (179)
376 2p67_A LAO/AO transport system 97.1 9.2E-05 3.1E-09 87.5 0.3 53 1261-1313 44-96 (341)
377 1mky_A Probable GTP-binding pr 97.0 0.00027 9.2E-09 86.5 4.1 61 1274-1334 181-253 (439)
378 1rz3_A Hypothetical protein rb 97.0 0.00014 4.9E-09 79.0 1.4 38 643-680 19-56 (201)
379 2www_A Methylmalonic aciduria 97.0 0.00018 6.3E-09 85.2 2.4 44 1271-1314 72-115 (349)
380 2vp4_A Deoxynucleoside kinase; 97.0 0.00022 7.7E-09 79.2 2.7 36 642-681 16-51 (230)
381 3lxx_A GTPase IMAP family memb 97.0 0.0027 9.4E-08 70.6 11.6 28 1275-1302 31-58 (239)
382 3tau_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 76.7 3.7 29 644-672 6-34 (208)
383 1m2o_B GTP-binding protein SAR 96.9 0.0005 1.7E-08 73.7 4.5 47 1262-1309 13-67 (190)
384 1v5w_A DMC1, meiotic recombina 96.9 0.0027 9.3E-08 74.9 11.2 108 642-775 118-234 (343)
385 2qby_A CDC6 homolog 1, cell di 96.9 0.00043 1.5E-08 82.4 4.2 31 1271-1301 43-73 (386)
386 3b9p_A CG5977-PA, isoform A; A 96.9 0.0029 9.8E-08 72.8 10.8 76 645-775 53-128 (297)
387 3kl4_A SRP54, signal recogniti 96.9 0.001 3.5E-08 80.5 7.1 35 645-679 96-130 (433)
388 1zu4_A FTSY; GTPase, signal re 96.9 0.00017 5.8E-09 84.3 0.1 46 636-681 95-140 (320)
389 3m6a_A ATP-dependent protease 96.9 0.00021 7E-09 89.8 0.8 47 634-681 97-143 (543)
390 4dcu_A GTP-binding protein ENG 96.8 0.0015 5E-08 80.4 7.9 57 1385-1444 87-144 (456)
391 1ypw_A Transitional endoplasmi 96.8 0.00037 1.3E-08 91.6 2.6 39 1268-1308 233-271 (806)
392 2z4s_A Chromosomal replication 96.8 0.0029 9.8E-08 77.4 10.3 44 758-802 191-237 (440)
393 3cr8_A Sulfate adenylyltranfer 96.8 0.00032 1.1E-08 87.7 1.7 40 642-681 365-406 (552)
394 2gj8_A MNME, tRNA modification 96.8 0.00077 2.6E-08 71.0 4.5 27 1271-1297 2-28 (172)
395 1knq_A Gluconate kinase; ALFA/ 96.8 0.00042 1.4E-08 73.2 2.2 34 644-681 6-39 (175)
396 3b9p_A CG5977-PA, isoform A; A 96.8 0.0029 9.8E-08 72.8 9.4 70 1385-1454 98-187 (297)
397 1j8m_F SRP54, signal recogniti 96.7 0.0025 8.4E-08 73.7 8.3 51 1264-1315 89-140 (297)
398 1u94_A RECA protein, recombina 96.7 0.0083 2.9E-07 71.0 12.8 47 1262-1308 50-99 (356)
399 1lv7_A FTSH; alpha/beta domain 96.7 0.0062 2.1E-07 68.5 11.0 45 1262-1310 36-80 (257)
400 3ice_A Transcription terminati 96.6 0.00031 1.1E-08 82.6 -0.2 54 616-671 132-199 (422)
401 2ffh_A Protein (FFH); SRP54, s 96.6 0.00062 2.1E-08 82.3 2.2 43 637-681 91-133 (425)
402 3r20_A Cytidylate kinase; stru 96.6 0.00095 3.3E-08 74.1 3.4 88 1273-1366 9-114 (233)
403 2qby_A CDC6 homolog 1, cell di 96.5 0.0012 4E-08 78.6 4.3 31 644-674 43-73 (386)
404 1sxj_D Activator 1 41 kDa subu 96.5 0.00054 1.9E-08 80.8 1.4 44 1400-1444 133-176 (353)
405 2qor_A Guanylate kinase; phosp 96.5 0.0004 1.4E-08 75.5 0.2 54 1269-1322 8-72 (204)
406 3bh0_A DNAB-like replicative h 96.5 0.0025 8.5E-08 74.3 6.8 34 1262-1295 57-90 (315)
407 1l8q_A Chromosomal replication 96.5 0.0028 9.7E-08 74.0 7.2 29 645-673 36-64 (324)
408 1kag_A SKI, shikimate kinase I 96.5 0.001 3.6E-08 69.8 3.1 33 1272-1308 3-35 (173)
409 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0014 4.9E-08 67.6 3.7 30 637-667 15-44 (149)
410 2wji_A Ferrous iron transport 96.5 0.012 4.2E-07 61.0 11.0 24 648-671 5-28 (165)
411 1njg_A DNA polymerase III subu 96.5 0.0021 7.2E-08 70.5 5.3 46 1399-1445 125-170 (250)
412 1m7g_A Adenylylsulfate kinase; 96.4 0.00061 2.1E-08 74.5 0.7 42 1268-1309 20-63 (211)
413 2yvu_A Probable adenylyl-sulfa 96.4 0.011 3.8E-07 62.8 10.6 40 1269-1308 9-49 (186)
414 2p67_A LAO/AO transport system 96.4 0.0004 1.4E-08 82.0 -0.9 46 634-679 44-89 (341)
415 1ega_A Protein (GTP-binding pr 96.4 0.0015 5.2E-08 75.7 3.8 26 645-670 7-32 (301)
416 4eaq_A DTMP kinase, thymidylat 96.4 0.0013 4.6E-08 73.0 3.1 45 1263-1308 13-60 (229)
417 2w58_A DNAI, primosome compone 96.4 0.0031 1.1E-07 68.1 6.0 27 1274-1300 55-81 (202)
418 1f6b_A SAR1; gtpases, N-termin 96.4 0.0009 3.1E-08 72.3 1.6 42 627-669 7-48 (198)
419 1ypw_A Transitional endoplasmi 96.3 0.0057 1.9E-07 80.3 9.3 47 1265-1313 503-549 (806)
420 1kag_A SKI, shikimate kinase I 96.3 0.0012 4.2E-08 69.3 2.4 28 645-672 3-30 (173)
421 2w58_A DNAI, primosome compone 96.3 0.0011 3.8E-08 71.6 2.0 27 647-673 55-81 (202)
422 1l8q_A Chromosomal replication 96.3 0.0039 1.3E-07 72.8 6.6 27 1273-1299 37-63 (324)
423 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0019 6.4E-08 77.1 3.8 41 1269-1309 18-69 (396)
424 4eaq_A DTMP kinase, thymidylat 96.2 0.0016 5.5E-08 72.3 2.8 42 635-677 12-56 (229)
425 4fcw_A Chaperone protein CLPB; 96.2 0.0044 1.5E-07 71.6 6.4 31 1274-1304 48-78 (311)
426 2i1q_A DNA repair and recombin 96.2 0.0032 1.1E-07 73.6 5.0 27 1269-1295 94-120 (322)
427 3bos_A Putative DNA replicatio 96.2 0.003 1E-07 69.6 4.5 28 1272-1299 51-78 (242)
428 2wji_A Ferrous iron transport 96.2 0.0039 1.3E-07 64.9 5.1 24 1274-1297 4-27 (165)
429 3lxw_A GTPase IMAP family memb 96.1 0.012 4.3E-07 65.8 9.6 25 648-672 23-47 (247)
430 1u94_A RECA protein, recombina 96.1 0.019 6.5E-07 67.9 11.5 29 643-671 60-88 (356)
431 2pez_A Bifunctional 3'-phospho 96.1 0.0014 4.7E-08 69.6 1.4 31 644-675 3-33 (179)
432 3bos_A Putative DNA replicatio 96.1 0.0048 1.6E-07 68.0 5.8 28 645-672 51-78 (242)
433 2jaq_A Deoxyguanosine kinase; 96.1 0.00044 1.5E-08 74.6 -2.6 67 1275-1341 2-84 (205)
434 2www_A Methylmalonic aciduria 96.1 0.0016 5.3E-08 77.2 1.8 36 644-679 72-107 (349)
435 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0032 1.1E-07 65.0 3.9 31 1264-1295 15-45 (149)
436 3lxw_A GTPase IMAP family memb 96.1 0.0061 2.1E-07 68.4 6.5 24 1274-1297 22-45 (247)
437 3cf0_A Transitional endoplasmi 96.1 0.014 4.7E-07 67.5 9.6 38 1268-1307 44-81 (301)
438 2wjg_A FEOB, ferrous iron tran 96.0 0.0033 1.1E-07 66.6 3.9 23 1274-1296 8-30 (188)
439 3h4m_A Proteasome-activating n 96.0 0.014 4.8E-07 66.5 9.2 28 1270-1297 48-75 (285)
440 2qag_A Septin-2, protein NEDD5 96.0 0.00087 3E-08 79.7 -1.2 58 1243-1308 15-72 (361)
441 3h4m_A Proteasome-activating n 96.0 0.013 4.4E-07 66.8 8.7 28 644-671 49-76 (285)
442 2gj8_A MNME, tRNA modification 95.9 0.0071 2.4E-07 63.5 5.9 27 644-670 2-28 (172)
443 4dcu_A GTP-binding protein ENG 95.9 0.0093 3.2E-07 73.2 7.7 115 648-803 25-142 (456)
444 1m2o_B GTP-binding protein SAR 95.9 0.0047 1.6E-07 66.0 4.5 35 634-669 12-46 (190)
445 3cf0_A Transitional endoplasmi 95.9 0.012 4E-07 68.1 8.1 30 642-671 45-74 (301)
446 3n70_A Transport activator; si 95.9 0.02 6.9E-07 58.4 9.0 29 1272-1300 23-51 (145)
447 2q6t_A DNAB replication FORK h 95.8 0.015 5.1E-07 71.1 9.1 107 634-772 188-294 (444)
448 1m7g_A Adenylylsulfate kinase; 95.8 0.0016 5.4E-08 71.2 0.3 40 641-680 20-61 (211)
449 3bgw_A DNAB-like replicative h 95.7 0.016 5.6E-07 70.6 8.4 105 635-770 186-290 (444)
450 3llm_A ATP-dependent RNA helic 95.6 0.011 3.7E-07 65.6 6.0 126 643-786 73-203 (235)
451 3qks_A DNA double-strand break 95.6 0.006 2E-07 66.3 3.7 30 637-667 15-44 (203)
452 1y63_A LMAJ004144AAA protein; 95.6 0.0051 1.7E-07 65.6 3.1 32 1265-1296 2-33 (184)
453 1np6_A Molybdopterin-guanine d 95.6 0.0056 1.9E-07 64.9 3.3 37 1274-1310 7-46 (174)
454 4fcw_A Chaperone protein CLPB; 95.5 0.013 4.6E-07 67.5 6.5 32 646-677 47-78 (311)
455 3dm5_A SRP54, signal recogniti 95.5 0.065 2.2E-06 64.8 12.6 41 1272-1312 99-139 (443)
456 1jal_A YCHF protein; nucleotid 95.4 0.0091 3.1E-07 70.5 4.8 36 1273-1308 2-48 (363)
457 1y63_A LMAJ004144AAA protein; 95.4 0.006 2.1E-07 65.0 3.0 32 638-669 2-33 (184)
458 1mky_A Probable GTP-binding pr 95.4 0.015 5E-07 71.1 6.6 37 647-683 181-229 (439)
459 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0072 2.5E-07 72.1 3.7 28 642-669 18-45 (396)
460 2qor_A Guanylate kinase; phosp 95.3 0.0055 1.9E-07 66.5 2.2 30 642-671 8-37 (204)
461 2i1q_A DNA repair and recombin 95.3 0.028 9.4E-07 65.6 8.3 28 642-669 94-121 (322)
462 3ihw_A Centg3; RAS, centaurin, 95.3 0.014 4.7E-07 62.0 5.2 35 1275-1309 22-65 (184)
463 2yvu_A Probable adenylyl-sulfa 95.3 0.0052 1.8E-07 65.5 1.7 35 643-677 10-44 (186)
464 2chg_A Replication factor C sm 95.2 0.034 1.2E-06 59.9 8.0 45 1399-1444 101-145 (226)
465 2zej_A Dardarin, leucine-rich 95.2 0.0096 3.3E-07 63.1 3.5 25 1275-1299 4-28 (184)
466 2b8t_A Thymidine kinase; deoxy 95.1 0.02 7E-07 63.0 6.1 51 1400-1454 89-150 (223)
467 2q6t_A DNAB replication FORK h 95.1 0.044 1.5E-06 66.9 9.6 37 1262-1298 189-225 (444)
468 3t61_A Gluconokinase; PSI-biol 95.1 0.0064 2.2E-07 65.7 1.9 35 1273-1311 18-52 (202)
469 1xp8_A RECA protein, recombina 95.0 0.095 3.2E-06 62.1 11.8 29 1269-1297 70-98 (366)
470 3uk6_A RUVB-like 2; hexameric 95.0 0.057 1.9E-06 63.8 10.0 41 1271-1311 68-108 (368)
471 4ag6_A VIRB4 ATPase, type IV s 95.0 0.011 3.7E-07 71.0 3.7 57 1400-1456 262-335 (392)
472 2v1u_A Cell division control p 95.0 0.041 1.4E-06 65.1 8.6 29 1271-1299 42-70 (387)
473 1fzq_A ADP-ribosylation factor 94.9 0.012 4.2E-07 62.1 3.5 23 1274-1296 17-39 (181)
474 2p5t_B PEZT; postsegregational 94.9 0.007 2.4E-07 68.1 1.7 41 1269-1311 28-68 (253)
475 2wjg_A FEOB, ferrous iron tran 94.9 0.018 6.3E-07 60.7 4.8 22 648-669 9-30 (188)
476 2qgz_A Helicase loader, putati 94.9 0.0073 2.5E-07 70.1 1.7 26 646-671 152-177 (308)
477 2if2_A Dephospho-COA kinase; a 94.8 0.014 4.8E-07 63.0 3.5 21 1275-1295 3-23 (204)
478 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.032 1.1E-06 64.4 6.7 28 642-669 119-146 (331)
479 1j8m_F SRP54, signal recogniti 94.8 0.0043 1.5E-07 71.6 -0.6 40 639-679 92-131 (297)
480 3qks_A DNA double-strand break 94.7 0.017 5.7E-07 62.8 3.9 29 1265-1294 16-44 (203)
481 2v1u_A Cell division control p 94.7 0.041 1.4E-06 65.2 7.7 29 644-672 42-70 (387)
482 3d8b_A Fidgetin-like protein 1 94.6 0.11 3.7E-06 61.5 10.8 27 1271-1297 115-141 (357)
483 2vhj_A Ntpase P4, P4; non- hyd 94.5 0.043 1.5E-06 63.4 6.9 28 1268-1295 118-145 (331)
484 2zej_A Dardarin, leucine-rich 94.5 0.017 5.8E-07 61.2 3.3 26 648-673 4-29 (184)
485 2if2_A Dephospho-COA kinase; a 94.5 0.016 5.4E-07 62.6 3.1 21 648-668 3-23 (204)
486 1ex7_A Guanylate kinase; subst 94.4 0.015 5E-07 62.3 2.6 46 1276-1323 4-62 (186)
487 1uf9_A TT1252 protein; P-loop, 94.3 0.019 6.4E-07 61.7 3.1 32 1274-1310 9-40 (203)
488 3cmw_A Protein RECA, recombina 94.3 0.14 4.8E-06 71.2 12.2 40 1269-1308 728-768 (1706)
489 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.18 6.3E-06 56.2 11.3 26 1272-1297 38-63 (262)
490 2ga8_A Hypothetical 39.9 kDa p 94.2 0.0075 2.6E-07 70.6 -0.4 37 1261-1297 10-48 (359)
491 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.21 7.1E-06 58.2 11.8 26 645-670 44-69 (322)
492 2p5t_B PEZT; postsegregational 94.1 0.012 4.2E-07 66.0 1.3 38 642-681 28-65 (253)
493 2lkc_A Translation initiation 94.1 0.05 1.7E-06 56.6 5.7 26 1271-1296 6-31 (178)
494 1np6_A Molybdopterin-guanine d 94.0 0.015 5E-07 61.6 1.5 27 647-673 7-33 (174)
495 1ko7_A HPR kinase/phosphatase; 94.0 0.033 1.1E-06 64.3 4.5 46 1262-1308 134-183 (314)
496 3d8b_A Fidgetin-like protein 1 94.0 0.15 5E-06 60.3 10.3 27 644-670 115-141 (357)
497 3cm0_A Adenylate kinase; ATP-b 94.0 0.024 8.1E-07 60.1 3.0 26 644-669 2-27 (186)
498 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.17 5.8E-06 56.4 10.3 25 646-670 39-63 (262)
499 3cbq_A GTP-binding protein REM 94.0 0.03 1E-06 60.0 3.8 22 1275-1296 25-46 (195)
500 3cm0_A Adenylate kinase; ATP-b 94.0 0.023 7.8E-07 60.2 2.9 27 1271-1297 2-28 (186)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-171 Score=1748.59 Aligned_cols=1233 Identities=19% Similarity=0.228 Sum_probs=927.9
Q ss_pred HHccc-cCCCCCCCCCCCCCCCcHhHHHHHHHHHHhhccCC-----------CCCCchhhHHHHHHHH-hHHHHHHHHHH
Q 039402 243 IALGN-KKTLDLEDVPQLDSGDSVSGAFANFKNKLETEGGV-----------GSGLTTVKLIKAMFCS-VWKDVLVTGFL 309 (1496)
Q Consensus 243 ~~~g~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~-----------~~~~~~~~l~~al~~~-~~~~~~~~~~~ 309 (1496)
++.|. +++|+.+|.+.+.|+|..+...+.+++.|...... +...++.+ ++.++|. -+++.++.++-
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVS-IPQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCC-HHHHTTTCCHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCC-HHHHhhccChHHHHHHHHH
Confidence 44444 45799999999999999999999998887553210 00111223 3345542 13333333332
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCC-------C--------Cc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 310 TVLYTLASYVGP---YLIDTFVQYLNGR-------R--------DF-----ENEGYVLVSAFCVAKLVECLCQRFRVFRL 366 (1496)
Q Consensus 310 ~l~~~~~~~~~P---~ll~~~i~~~~~~-------~--------~~-----~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 366 (1496)
.++..+...+.| ++++++++.+.+. . .. ......++..++...+...++.....+..
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444 4555665543210 0 00 01111222233333333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039402 367 QQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASL 445 (1496)
Q Consensus 367 ~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l 445 (1496)
...|.|+-..++..+|+|.++++...++++++|+++|++++|++++++++ ..+..++..++.++.++++++..-...++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888999999999999999999999999999999999975 45778888888888888877766555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 446 AALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSA 525 (1496)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~ 525 (1496)
+.++++++++++...+.+...+..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+......
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999999988776666555544444444
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 039402 526 ISSFVFWGAP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQP 603 (1496)
Q Consensus 526 ~~~~~~~~~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 603 (1496)
.......... .++.+++++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++||.+|++.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 3333332222 23445567778888999999999999999999999999999999999999999999999998765432
Q ss_pred cccc-CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-
Q 039402 604 DLVE-KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG- 681 (1496)
Q Consensus 604 ~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g- 681 (1496)
+... ..+.......|+++|++|+|+..+++++|+|+||+|++||++|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 2211 11122234579999999999866678999999999999999999999999999999999999999999999999
Q ss_pred ------------eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 682 ------------TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 682 ------------~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|||+|+||+|++||||||+||.+ .+++++.++++.|++++|++.+|+|++|+|||+|.+||||||
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 4799999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+||||+|+||+||||||||||||+++++ ++++++.++.+|||+|+|||+++.++.||+|++|++|+|+++|+|+||
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~-~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEG-IVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHH-HHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHH-HHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHH
Confidence 9999999999999999999999999999855 556788888999999999999999999999999999999999999999
Q ss_pred HhcCcchHHHHHHhHHHHhhhCCCCCCCCccCC--CCCCCCccccccc--hhhhcc-ccCC------C-Cchhhhhh---
Q 039402 829 INSGTDFMELVGAHEQALLALGSIEGRPASERA--SGENGGTVIANRI--VKEVEN-NKGQ------N-DKADEVAV--- 893 (1496)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~------~-~~~~~~~~--- 893 (1496)
++.++.|.+++..+..........+.....+.. ............. .++... .+.. + ...++++.
T Consensus 640 ~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1321)
T 4f4c_A 640 MAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIG 719 (1321)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CCCC
T ss_pred HHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhcc
Confidence 999999999987654322111000000000000 0000000000000 000000 0000 0 00000000
Q ss_pred -hccchhHHHHHhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhhHHHhhcCC-C-CCCCCcccchHHHH
Q 039402 894 -SKGQLVQEEEREKGKVGFSVYWKYITTAFGGA-LVPFILLAQTLFQILQIASNYWIVWATPG-T-KDVKPVVTGSTLLI 969 (1496)
Q Consensus 894 -~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wl~~~~~~-~-~~~~~~~~~~~~l~ 969 (1496)
......+++.++.|......|+.| ....+.+ .+.+.+++.++.........+|+.+|... . ..........+|..
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1321)
T 4f4c_A 720 KDALSRLKQELEENNAQKTNLFEIL-YHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWAL 798 (1321)
T ss_dssp CCHHHHHHHTTTTSCCCCCCHHHHH-HHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHH
T ss_pred chhHHHHHHHHHHcCCcceeHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 000111222233333333333322 2222322 22222222222222222233333322111 0 11112233457788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCchhHHHHHhhhHHHHHhhhhHHHHHHH
Q 039402 970 VYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDA--TPSGRIINRASTDQSAADLGIPSLVGAYA 1047 (1496)
Q Consensus 970 vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~--tp~GrIlnR~s~D~~~vd~~l~~~~~~~~ 1047 (1496)
+|++++++..++.+++.++....+.++++++|.+++++++++|++|||+ +|+|+|+||+++|++.+|..++..+..++
T Consensus 799 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~ 878 (1321)
T 4f4c_A 799 MFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVI 878 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHH
Q 039402 1048 FSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFR 1127 (1496)
Q Consensus 1048 ~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~ 1127 (1496)
..++.+++.++++++.+|++.++++++++++++...++.+..+...+......++...++.|+++|+.|||+|++|++|.
T Consensus 879 ~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~ 958 (1321)
T 4f4c_A 879 TTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFY 958 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHH
T ss_pred HHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHH
Confidence 99999999999999999999888777777766666555544333333334445666788899999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1128 DRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVFL-ISIP--KGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1128 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~-~~~~--~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+++.+..+.+.+..+.....+.+.......+..+..+++..+. .... ...++++.+..++.+.......+.++...+
T Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1038 (1321)
T 4f4c_A 959 ENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYF 1038 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776655555444433333333322222221 1222 233455444444444444455667788888
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
.++++.+.+++|+.++.+.++|.+ +...+++.||..|.|+|+||+|+|+++. .+|||||||+|+||||||||||||
T Consensus 1039 ~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SG 1115 (1321)
T 4f4c_A 1039 PEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHhhCcccCC---CccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCC
Confidence 999999999999999998776643 2344567799999999999999997543 369999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc----CCCCCCcHHHHHHHHHHc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL----DPLEESTDEQIWEALDKC 1359 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL----dp~~~~sd~eI~~aL~~~ 1359 (1496)
||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+|| || ++++|+|||+||++|
T Consensus 1116 sGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a 1194 (1321)
T 4f4c_A 1116 CGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLA 1194 (1321)
T ss_dssp SSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999996 44 578999999999999
Q ss_pred CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1360 QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1360 ~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
+++|+|.++|+||||+|||+|.|||||||||+||||||||+|+|||||||||+||++||+.||++|++.+++||||+|||
T Consensus 1195 ~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1195 NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp TCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred CChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1440 RITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1440 Rl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|++||++||||+|||+|+|+|+|+|+||+++ +|.|++|++++.
T Consensus 1275 RLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp SSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999999999999999999999986 689999998654
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8e-141 Score=1443.43 Aligned_cols=1174 Identities=18% Similarity=0.217 Sum_probs=870.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------C------------cchhHHHHHHHHHHHHHHHHHH
Q 039402 298 SVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRR-------D------------FENEGYVLVSAFCVAKLVECLC 358 (1496)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~-------~------------~~~~g~~l~~~l~~~~~~~~l~ 358 (1496)
.+|..++++.++.++..++..+.|++++.+++.+.... . .......++..++...++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777778888888888877653110 0 0011122333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Q 039402 359 QRFRVFRLQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILY 437 (1496)
Q Consensus 359 ~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~ 437 (1496)
.....+...+.+.++...++..+|+|.++++...++++++|+++|++++|++.+.+++. .+..+...++.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667788889999999999999999999999999999999999999999998754 34444555555555555554
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 039402 438 KNLGIASLAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWL 517 (1496)
Q Consensus 438 ~~lg~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l 517 (1496)
..-...+++.+++++++..+..++.+...+..++.++..++..+...|.++||++||.|++|+.+.+++.+..++-.+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 43333445555555666666777788888888888999999999999999999999999999988888766554433333
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039402 518 KKYVYTSAISSFVFW--GAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASF 595 (1496)
Q Consensus 518 ~~~~~~~~~~~~~~~--~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~f 595 (1496)
.+..........+.. .....+.+++++.+.+..+.+++|.+++++.++.....|+..+...+..+.++.++.+|+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222211 112234455677777888899999999888777788889999999999999999999999999
Q ss_pred hcCCCCCCc-cccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 596 FCLDDLQPD-LVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 596 L~~~e~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
++.++..++ .....+.......++++|++|+|+..++.++|+|+||+|++||+++||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 976543221 1111111123457999999999975445689999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCC
Q 039402 675 GTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERG 740 (1496)
Q Consensus 675 G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g 740 (1496)
|+|.++|. +|||+|+||+|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999994 799999999999999999999875 6788899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEE
Q 039402 741 INLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKIT 820 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 820 (1496)
.+|||||||||+||||++++|+|+|||||||+||+++++.+ .++++...+|+|+|+||||++.+..||+|++|++|+|+
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~ 603 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999997766 45667777899999999999999999999999999999
Q ss_pred EecChHHHHhcCcchHHHHHHhHHHHhhhCCCCCCCCccCCCCCCCCccccccchhhhccccCCCCchhhhhhhccchhH
Q 039402 821 QAGKYNDLINSGTDFMELVGAHEQALLALGSIEGRPASERASGENGGTVIANRIVKEVENNKGQNDKADEVAVSKGQLVQ 900 (1496)
Q Consensus 821 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1496)
+.|+++|+++.++.|.++...+..........+.............................. ..............
T Consensus 604 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 680 (1284)
T 3g5u_A 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK---SICGPHDQDRKLST 680 (1284)
T ss_dssp CEECHHHHHHTTSHHHHHHHHTC---------------------------------------------------------
T ss_pred EECCHHHHHhCCCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---ccccccccccccch
Confidence 999999999988888877654322110000000000000000000000000000000000000 00000000001111
Q ss_pred HHHHh--hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh----hhHHHhhcCCCCCCCCcccchHHHHHHHHH
Q 039402 901 EEERE--KGKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIAS----NYWIVWATPGTKDVKPVVTGSTLLIVYVAL 974 (1496)
Q Consensus 901 ~e~~~--~g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l 974 (1496)
+++.+ ....++..+++|.+.......+ .+++.++..++.... ..|+..+...............+..+|+++
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 758 (1284)
T 3g5u_A 681 KEALDEDVPPASFWRILKLNSTEWPYFVV--GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLIL 758 (1284)
T ss_dssp ---CCCCCSCCCTTHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchHHHHHHHHhcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Confidence 11111 1223344455555443322222 222222222222222 333333332110000111234567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc--ccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHH
Q 039402 975 AVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFD--ATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIR 1052 (1496)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd--~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~ 1052 (1496)
+++..++.+++.++....+.+.+.++|.+++++++++|++||| .+|+|+++||+++|++.+|..++..+..++..++.
T Consensus 759 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 838 (1284)
T 3g5u_A 759 GIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIAN 838 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHH
Q 039402 1053 ILGTIAVMSQVAWQVFIVFV---PAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDR 1129 (1496)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~~i---p~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~ 1129 (1496)
+++.+++++.++|.+.++++ |+++++.++...+.. ...+......+....++.|+++|+.|||+|++++++.++
T Consensus 839 ~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~ 915 (1284)
T 3g5u_A 839 LGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLS---GQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915 (1284)
T ss_dssp HHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 98888888888887655444 444444333333322 222222233344556889999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1130 NMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFA---FTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFAC 1205 (1496)
Q Consensus 1130 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~---~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~ 1205 (1496)
+.+..+...+..... ..|.+....+...+... .+..+ ......+.++.+.+..++.+.......+..+...+.
T Consensus 916 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1284)
T 3g5u_A 916 YAQSLQIPYRNAMKK---AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992 (1284)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888766554433 23334333333332222 11111 122345667777666666666666666666666666
Q ss_pred HHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCC
Q 039402 1206 DLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGS 1284 (1496)
Q Consensus 1206 ~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGS 1284 (1496)
+++....+++|+.++.+.+++.+... ..+.+.||..|.|+|+||+++|+.. ..++|+|+||+|++||++||||||||
T Consensus 993 ~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGs 1070 (1284)
T 3g5u_A 993 DYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGC 1070 (1284)
T ss_dssp CSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSST
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCC
Confidence 77888999999999998766543211 1122335668999999999999753 24699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC---CCCcHHHHHHHHHHcCC
Q 039402 1285 GKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL---EESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1285 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~sd~eI~~aL~~~~L 1361 (1496)
|||||+++|+|+++|++|+|.|||+|+++++++++|++|++|||||.+|++|||+||.+. ...++++++++++++++
T Consensus 1071 GKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~ 1150 (1284)
T 3g5u_A 1071 GKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150 (1284)
T ss_dssp THHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999754 35789999999999999
Q ss_pred cHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1362 GDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1362 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
++++.++|+||||.|+|+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|||+||||+
T Consensus 1151 ~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1151 HQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230 (1284)
T ss_dssp HHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCT
T ss_pred HHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred chhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhhcc
Q 039402 1442 TSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTLRS 1486 (1496)
Q Consensus 1442 ~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~~~ 1486 (1496)
+++.+||||+||++|+|+|+|+|++|+++ +|.|++|++......
T Consensus 1231 ~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1231 STIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp TGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC---
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhcc
Confidence 99999999999999999999999999975 699999998765433
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-79 Score=838.00 Aligned_cols=515 Identities=20% Similarity=0.256 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHH
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGA 1045 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~ 1045 (1496)
.+...|++++++..++.+++.+++.+.+.+...+++.++++++++.|++|||++++|+++||+++|++.++..+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1046 YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1046 ~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
++..++.+++.++++++.+|.+.++++.+++++.++..++.+..+...+......+...+++.|+++|+++||+|++|++
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 99999999999999999999998887777777777777777777777777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+.+++.+..+...+..........+......++..+.++++.++ ......|.+++|.+..++.|...+...+..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887776665555555545555544444333333 23456788999999999999999999999999999
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
..+.....|++|+.++++.+++.+.. ....+...+..|.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSS--SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCS--SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccc--ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999876653321 12223344668999999999999743 3579999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+|+|++|+|.|||+||+++++++||++|+||||||.||+|||||||.... +++|+++++|++.|+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999998654 58999999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
++|.++|+|+||.|||+|.+||||||||+|||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|+.+||+|+||++|+|+|+|+|+||+++ +|.|++|++...
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999975 799999997653
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-78 Score=770.85 Aligned_cols=571 Identities=19% Similarity=0.263 Sum_probs=474.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 039402 907 GKVGFSVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARS 986 (1496)
Q Consensus 907 g~v~~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~ 986 (1496)
|..+++.+++|++...+ .+.+.+++.++..++.++.++++.++.+.............+..+++++.++..++.+++.
T Consensus 7 g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 7 GGGGSKTLARYLKPYWI--FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp -CCCCCCGGGGTGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554322 2223344556667778888888887654211111111112334455566677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039402 987 TLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQ 1066 (1496)
Q Consensus 987 ~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1066 (1496)
++....+.+...+++.++++++++.|+.||+++++|+++||+++|++.++..+...+..++...+.+++.+++++.++|.
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888888888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHH
Q 039402 1067 VFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAA 1146 (1496)
Q Consensus 1067 ~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~ 1146 (1496)
+.++++.+++++..+..++.+..+...+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666666777777777888999999999999999999999999999999888887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCC
Q 039402 1147 AMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPS 1225 (1496)
Q Consensus 1147 ~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~ 1225 (1496)
...+......++..+..++++++ ......|.+++|.+..++.|...+...+..+...+..+.+...|.+|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444433444433333322222 23345788999999999999999999999999999999999999999999998765
Q ss_pred CCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEE
Q 039402 1226 EPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIL 1305 (1496)
Q Consensus 1226 E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ 1305 (1496)
+.+. ...+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 325 ~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 325 AIEE---ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp SCCC---CTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred ccCC---CCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 5321 1112222355789999999999987667899999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCC
Q 039402 1306 IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWS 1384 (1496)
Q Consensus 1306 IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS 1384 (1496)
+||+|+++++.+++|++|++|||||.+|++||||||.... +.++++++++++.+++++++.++|+|+||.++|+|.+||
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 9999999999999999999999999999999999998653 688999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecCh
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNP 1464 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p 1464 (1496)
||||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHhhcCCcHHHHHHHHHh
Q 039402 1465 ANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1465 ~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
+||+++ ++.|+++++++.
T Consensus 562 ~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 562 KELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHHH-CHHHHHHHHHHC
T ss_pred HHHHhC-CcHHHHHHHHHh
Confidence 999975 588999987653
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.3e-79 Score=776.90 Aligned_cols=549 Identities=25% Similarity=0.330 Sum_probs=481.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 929 FILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCI 1008 (1496)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~l 1008 (1496)
+.+++.++..++.++.++++.+..+.............++.+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 41 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 120 (598)
T 3qf4_B 41 MVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKL 120 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888887765432111111112334567777788888899999999999999999999999999999
Q ss_pred hcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1009 FRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISS 1088 (1496)
Q Consensus 1009 l~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~ 1088 (1496)
++.|++||+++++|+++||+++|++.++..++..+..++..++.+++.+++++..+|++.++++.++++++++..++.+.
T Consensus 121 l~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~ 200 (598)
T 3qf4_B 121 QRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200 (598)
T ss_dssp HHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777778888888888
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1089 ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV 1168 (1496)
Q Consensus 1089 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~ 1168 (1496)
.++..+......+.+.+++.|+++|+.+||+|++|+++.+++.+..+...+..........|.....+++..+..+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (598)
T 3qf4_B 201 TRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISG 280 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999888888777766666666666666665554443333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEE
Q 039402 1169 F-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKID 1247 (1496)
Q Consensus 1169 ~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~ 1247 (1496)
+ ......|.+++|.+..+++|...+...+..+...+..++..+.|++|+.++++.|+|.+. ..+.+.||..|.|+
T Consensus 281 ~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~ 356 (598)
T 3qf4_B 281 FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIE 356 (598)
T ss_dssp HHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEE
Confidence 3 234457889999999999999999999999999999999999999999999988776431 12233456778999
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
++||+++|+++ +++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++||
T Consensus 357 ~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 99999999754 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|||.+|++|||||+.... ..++++++++++.+++++++.++|+|+||.++|+|.+||||||||+|||||++++|+||||
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998653 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHh
Q 039402 1407 DEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYT 1483 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~ 1483 (1496)
|||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|++++.+..
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHH
T ss_pred ECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHh
Confidence 9999999999999999999998889999999999999999999999999999999999999975 689999987654
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.7e-76 Score=746.42 Aligned_cols=562 Identities=22% Similarity=0.306 Sum_probs=483.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGSTLL-IVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~l-~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+.+++|++...+.. .+.+++.++..++..+.++++.++.+..... .......++ .+++++.++..++.+++.++..
T Consensus 14 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 14 KRLWTYIRLYKAGL--VVSTIALVINAAADTYMISLLKPLLDEGFGN-AESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555433222 2233444556667777777777655321110 111112222 3356667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+....++.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
++.++++++++..++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........|
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888889999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
.....+++..+..++++++ ......|.+++|.+..++.|...+...+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 8888887776655444333 233457889999999999999999999999999999999999999999999987665321
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
. +.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.
T Consensus 331 ---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 331 ---G--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred ---C--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 11223456889999999999754356999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|+++++.+++|+++++|||||.+|++|||||+.... +.++++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 999999999999999999999999999999998653 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHH
Q 039402 1468 LENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~ 1482 (1496)
+++ ++.|+++++..
T Consensus 566 ~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 566 LAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HhC-CcHHHHHHHHh
Confidence 975 68999998764
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.4e-76 Score=748.79 Aligned_cols=562 Identities=21% Similarity=0.261 Sum_probs=483.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 912 SVYWKYITTAFGGALVPFILLAQTLFQILQIASNYWIVWATPGTKDVKPVVTGST-LLIVYVALAVGSSFCVLARSTLLA 990 (1496)
Q Consensus 912 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~-~l~vy~~l~~~~~~~~~~~~~~~~ 990 (1496)
+.+++|++...+ .+.+.+++.++..++..+.++++.++.+..... ....... +..+++++.++..++.+++.++..
T Consensus 14 ~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 14 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TDRSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544322 222333444566677777788877665432111 1111111 223356667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039402 991 TAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIV 1070 (1496)
Q Consensus 991 ~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1070 (1496)
..+.+....++.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039402 1071 FVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEW 1150 (1496)
Q Consensus 1071 ~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1150 (1496)
++..+++++++..++.+..++..+......++..+++.|+++|+.+||+|+.++++.+++.+..+...+..........|
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 250 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888889999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCC
Q 039402 1151 LGLRLDMLSSITFAFTLVFL-ISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPL 1229 (1496)
Q Consensus 1151 l~~rl~~l~~~~~~~~~~~~-~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~ 1229 (1496)
.....+++..+..++++++. .....|.+++|.+..++.|...+...+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b60_A 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE 330 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 88888887776555444332 33456889999999999999999999999999999999999999999999987765421
Q ss_pred CccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1230 AIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1230 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
.+.+.+|..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.
T Consensus 331 -----~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 331 -----GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp -----CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred -----CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 111223456889999999999754356999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhcccEEEcccccccccchhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1310 DISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1310 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
|+++++.+++|+++++|||||.+|++|||||+.... +.++++++++++++++++++.++|+|+||.++|+|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 999999999999999999999999999999998643 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
|||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHH
Q 039402 1468 LENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1468 l~~~~s~F~~l~~~~ 1482 (1496)
+++ ++.|+++++..
T Consensus 566 ~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 566 LAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHH-TSSHHHHHHHT
T ss_pred HHc-CCHHHHHHHHh
Confidence 975 67899998753
No 8
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.6e-76 Score=749.29 Aligned_cols=508 Identities=22% Similarity=0.271 Sum_probs=445.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHH
Q 039402 969 IVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAF 1048 (1496)
Q Consensus 969 ~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~ 1048 (1496)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~ 144 (578)
T 4a82_A 65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWL 144 (578)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667788888899999999999999999999999999999999999999999999999999888777777788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHH
Q 039402 1049 SIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRD 1128 (1496)
Q Consensus 1049 ~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~ 1128 (1496)
..+.+++.+++++..+|++.++.+..+++++.+..++.+..++..+......++..+++.|+++|+.+||+|++|+.+.+
T Consensus 145 ~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 224 (578)
T 4a82_A 145 DCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAK 224 (578)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHH
Confidence 88888888889999999988887777777777777777888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1129 RNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDL 1207 (1496)
Q Consensus 1129 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~l 1207 (1496)
++.+..+...+..........+.....+.+..+..+++..+ ......|.+++|.+..+++|...+...+..+...+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 304 (578)
T 4a82_A 225 NFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL 304 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777666555544444444444443332222222 22334678999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHH
Q 039402 1208 ENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKS 1287 (1496)
Q Consensus 1208 e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKS 1287 (1496)
++...|++|+.++++.++|.+. ...+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||
T Consensus 305 ~~~~~s~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKS 381 (578)
T 4a82_A 305 TQSFASMDRVFQLIDEDYDIKN---GVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 381 (578)
T ss_dssp HHHHHHHHHHHHHHTCCCSSCC---CTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHH
T ss_pred HHHHHHHHHHHHHHcCCCcccC---CCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHH
Confidence 9999999999999987765431 1122233456789999999999987666799999999999999999999999999
Q ss_pred HHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCcHHHH
Q 039402 1288 TLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLGDEVR 1366 (1496)
Q Consensus 1288 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~~~i~ 1366 (1496)
||+++|.|+++|++|+|.+||.|+++++.+++|+++++|||||.+|++|||||+... .+.++++++++++.+++++++.
T Consensus 382 Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
T 4a82_A 382 TLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM 461 (578)
T ss_dssp HHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999753 4678999999999999999999
Q ss_pred hccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc
Q 039402 1367 KKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID 1446 (1496)
Q Consensus 1367 ~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~ 1446 (1496)
++|+|+||.++|+|.+||||||||++||||++++|+||+||||||+||+++++.|++.|++..+++|+|+||||++++..
T Consensus 462 ~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541 (578)
T ss_dssp TSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred hCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1447 SDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1447 ~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
||||+||++|+|+|.|+|+||+++ ++.|+++++
T Consensus 542 ~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~ 574 (578)
T 4a82_A 542 ADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 574 (578)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 999999999999999999999975 688988875
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.3e-75 Score=740.21 Aligned_cols=549 Identities=22% Similarity=0.281 Sum_probs=452.5
Q ss_pred HHHHHHHHHHHHhhhHHHhhcCCCCCCCC-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 932 LAQTLFQILQIASNYWIVWATPGTKDVKP-VV--TGSTLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCI 1008 (1496)
Q Consensus 932 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~-~~--~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~l 1008 (1496)
++.++..++..+.++++.+..+....... .. ....+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 26 ~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 105 (595)
T 2yl4_A 26 GFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSI 105 (595)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666554321100000 01 1122344555666677778888888899999999999999999999
Q ss_pred hcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1009 FRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGAYAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISS 1088 (1496)
Q Consensus 1009 l~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~ 1088 (1496)
++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.++++++++|++.++++..+++++.+..++.+.
T Consensus 106 ~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~ 185 (595)
T 2yl4_A 106 LRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 185 (595)
T ss_dssp HHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666666666666666666
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1089 ARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESRFRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLV 1168 (1496)
Q Consensus 1089 ~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~ 1168 (1496)
.++..+......+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..........|.....+++..+..+++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (595)
T 2yl4_A 186 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLY 265 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788999999999999999999999999999999999988888877777777776666666554443333
Q ss_pred H-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcce-E
Q 039402 1169 F-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGK-I 1246 (1496)
Q Consensus 1169 ~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~-I 1246 (1496)
+ ......|.+++|.+..++.|...+...+..+...+.+++....+++|+.++++.|+|.+.. . .+++..+..|. |
T Consensus 266 ~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~-~~~~~~~~~~~~i 342 (595)
T 2yl4_A 266 KGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--E-GVILNEKSFQGAL 342 (595)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--C-SBCCCTTTCCCCE
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--C-CCCCCcCCCCCeE
Confidence 3 2334578899999999999999999999999999999999999999999999876654321 1 11111234678 9
Q ss_pred EEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1247 DLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
+++||+++|+++ ..++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.|+++++.+++|+++++
T Consensus 343 ~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 422 (595)
T 2yl4_A 343 EFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT 422 (595)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEE
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEE
Confidence 999999999753 2469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccchhhccCCCC----CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1326 IPQDPVMFEGTVRSNLDPLE----ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|||||.+|++||||||.... +.++++++++++++++++++.++|+|+||.++|+|.+||||||||++||||++++|
T Consensus 423 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p 502 (595)
T 2yl4_A 423 VSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502 (595)
T ss_dssp ECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC
T ss_pred EccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999996432 26889999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+||+||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|++++++.|+++++.
T Consensus 503 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 582 (595)
T 2yl4_A 503 KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNK 582 (595)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C--------
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999997667899999876
Q ss_pred Hh
Q 039402 1482 YT 1483 (1496)
Q Consensus 1482 ~~ 1483 (1496)
..
T Consensus 583 q~ 584 (595)
T 2yl4_A 583 QS 584 (595)
T ss_dssp --
T ss_pred hh
Confidence 54
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-76 Score=807.59 Aligned_cols=514 Identities=20% Similarity=0.267 Sum_probs=450.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCchhHHHHHhhhHHHHHhhhhHHHHH
Q 039402 966 TLLIVYVALAVGSSFCVLARSTLLATAGYKTATLLFNEMHYCIFRAPMSFFDATPSGRIINRASTDQSAADLGIPSLVGA 1045 (1496)
Q Consensus 966 ~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~ll~~ll~ap~~ffd~tp~GrIlnR~s~D~~~vd~~l~~~~~~ 1045 (1496)
.+.++|++++++..++.+++.++....+.+...++|.+++++++++|++|||++++|+++||+++|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcchHHHHHhccHHH
Q 039402 1046 YAFSIIRILGTIAVMSQVAWQVFIVFVPAVGSCIWYQQYYISSARELSRLVGVCKAPVIQHFAETVSGSTTIRSFDQESR 1125 (1496)
Q Consensus 1046 ~~~~~~~~l~~~~~~~~~~~~~~~~~ip~~~l~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIRaf~~~~~ 1125 (1496)
++..++.+++.++++++.+|++.+++++++++++++..++.+..+...+......++..+++.|+++|+.|||+|++|++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999888888888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 1126 FRDRNMKLMDEYSRPTFHIAAAMEWLGLRLDMLSSITFAFTLVF-LISIPKGFIDPAIAGLAVTYGLTLNTLLATLIWFA 1204 (1496)
Q Consensus 1126 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~y~l~l~~~l~~~i~~~ 1204 (1496)
+.+++.+..+.+.+..........+......++..+..+++.++ ......|.+++|.+..++.+.+.....+..+...+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877665544433333333333333322222222 12233566777777666666667777788888889
Q ss_pred HHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCC-CCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1205 CDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQ-MPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1205 ~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
..+++...+++|+.++++.+++.+...+...++ .+..|.|+|+||+|+|+++ .+++|+||||+|+|||++|||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 999999999999999998765532211111122 2447899999999999754 3479999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCC-CCCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPL-EESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+++|++|+|.+||+|+++++++++|++|++|||||.||++||||||.+. .+.++++++++++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999854 468899999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
+++.++|+|+||.++|+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
++.+||+|+||++|+|+|.|+|++|+++ ++.|++++...
T Consensus 587 ~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 587 TVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp HHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 9999999999999999999999999975 68899888653
No 11
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2e-71 Score=705.62 Aligned_cols=547 Identities=22% Similarity=0.254 Sum_probs=464.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDF--ENE----GYVLVSAFCVAKLVECLCQRFRVFR 365 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~--~~~----g~~l~~~l~~~~~~~~l~~~~~~~~ 365 (1496)
++.+++.+++.++...++.++..++..+.|++++.++|.+...... ... .+.+++++++..++..++.....+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (578)
T 4a82_A 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYL 84 (578)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999999987643321 111 1344455566666777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 039402 366 LQQLGIRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSW-YIHDPWLVLFEVALSILILYKNLGIAS 444 (1496)
Q Consensus 366 ~~~~~~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~~~~~lL~~~lg~~~ 444 (1496)
..+++.++...++..+|+|.++++...++++++|+++|++++|++++.+++. .++.+|..++.+++++++++...+..+
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (578)
T 4a82_A 85 AQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8999999999999999999999999999999999999999999999999764 467889999988888888877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 445 LAALFGTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTS 524 (1496)
Q Consensus 445 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~ 524 (1496)
+++++++++++++...+.+...+..++.++..+++.+.+.|.++|+++||.|+||+.+.+++.+.++++.+...+.....
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888899999999999999999999999999999999999999999999888777766665555544
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 039402 525 AISSFVFWGAPT--FVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQ 602 (1496)
Q Consensus 525 ~~~~~~~~~~p~--~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 602 (1496)
.....+...... .+.++.++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 443333222222 234456777888888999999999999999999999999999999999999999999999876543
Q ss_pred CccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 603 PDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
++.....+.......++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 325 ~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 325 KNGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp CCCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred cCCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 221111111223457999999999964 3468999999999999999999999999999999999999999999999993
Q ss_pred -------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++||||+|++|++||+|||.+|.+ .++++..++++.++++++++.+|.|++|.+|++|.+||||||
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 799999999999999999999875 567788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|||+||||++++|+++||||||||||+++++.+. ++++...+++|+|+||||++.+..||+|++|++|++++.|+++|+
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999988775 566667789999999999999989999999999999999999999
Q ss_pred HhcCcchHHHHH
Q 039402 829 INSGTDFMELVG 840 (1496)
Q Consensus 829 ~~~~~~~~~~~~ 840 (1496)
++.++.|.++..
T Consensus 563 ~~~~~~~~~~~~ 574 (578)
T 4a82_A 563 IAKQGAYEHLYS 574 (578)
T ss_dssp HHTTSHHHHHHT
T ss_pred HhCCcHHHHHHH
Confidence 988877777653
No 12
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-70 Score=693.37 Aligned_cols=548 Identities=18% Similarity=0.212 Sum_probs=447.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 291 LIKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 291 l~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
.++.+++.+|+.++...++.++..++..+.|++++.++|....... ....+.+++.+++..++..++.....+...+.+
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999999999999999998654322 222223333344444455555555566667788
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFSWY-IHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++...++..+|+|.++++....+++++|+++|++++|++++.+++.. +..++..++.++.++++++......+++.++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999999999997654 4455666777777766665554444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSF 529 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~ 529 (1496)
+++++.++..++.+...+..++.++..+++.+.+.|.++|+++||.|+||+.+.+++.+..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777888888899999999999999999999999999999999987777765544333332222222222111
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 530 V--FWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 530 ~--~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
+ +......+.++.++.+.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..++...
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 1 22233445566778888889999999999999999999999999999999999999999999999986543322111
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
..+.......++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 1111123457999999999963 3468999999999999999999999999999999999999999999999983
Q ss_pred --------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
++||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 699999999999999999999975 67788889999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGT 833 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 833 (1496)
|||++++|+|+|||||||+||+++++++.+ .++...+|+|+|+||||++.+..||+|++|++|+|++.|+++|+++.++
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~ 569 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK 569 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999999999999999999999999999976 4566677999999999999998999999999999999999999998887
Q ss_pred chHHHHHH
Q 039402 834 DFMELVGA 841 (1496)
Q Consensus 834 ~~~~~~~~ 841 (1496)
.|.++...
T Consensus 570 ~~~~~~~~ 577 (587)
T 3qf4_A 570 PYREIYES 577 (587)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78777653
No 13
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5e-70 Score=695.00 Aligned_cols=543 Identities=20% Similarity=0.259 Sum_probs=463.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 295 MFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIRMR 374 (1496)
Q Consensus 295 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ir 374 (1496)
+++.+++.++...++.++..++..+.|++++.+++.+...... ...+.+++++++..++..++.....+...+++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (598)
T 3qf4_B 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF-DLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVV 109 (598)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888999999999999999999999987643322 222333444555556677777777778888999999
Q ss_pred HHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039402 375 AALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAALFGTVI 453 (1496)
Q Consensus 375 ~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~~~ 453 (1496)
..++..+|+|.++++...++++++|+++|++++|++++.+++ ..++.+|..++.+++++++++...+..+++.++++++
T Consensus 110 ~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l 189 (598)
T 3qf4_B 110 FRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPL 189 (598)
T ss_dssp HHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 4678888889988888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 454 VMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLRKRETGWLKKYVYTSAISSFVFWG 533 (1496)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 533 (1496)
++++...+.+..++..++..+..+++.+.+.|.++|+++||.|+||+.+.+++.+.+++..+...+..........+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (598)
T 3qf4_B 190 TVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNM 269 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999999999999988888777666655544433333222
Q ss_pred HH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCC
Q 039402 534 AP--TFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPS 611 (1496)
Q Consensus 534 ~p--~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 611 (1496)
.. ..+.+++++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++..+... ..+.
T Consensus 270 ~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~ 348 (598)
T 3qf4_B 270 VNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-AVEL 348 (598)
T ss_dssp HHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-CCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCC
Confidence 22 23445667888888899999999999999999999999999999999999999999999998765432211 1111
Q ss_pred CCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----------
Q 039402 612 GSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG---------- 681 (1496)
Q Consensus 612 ~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g---------- 681 (1496)
......++++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 349 ~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 349 REVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHH
Confidence 123357999999999963 46799999999999999999999999999999999999999999999999
Q ss_pred ---eeEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 682 ---TKAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 682 ---~~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+++||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+||||+
T Consensus 427 ~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875 567778889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
+++|+|+|||||||+||+++++.+.+ ++....+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.++.|.+
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 585 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYE 585 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHH
Confidence 99999999999999999999999865 55666689999999999999988999999999999999999999998888888
Q ss_pred HHHHh
Q 039402 838 LVGAH 842 (1496)
Q Consensus 838 ~~~~~ 842 (1496)
++..+
T Consensus 586 ~~~~~ 590 (598)
T 3qf4_B 586 LFTSQ 590 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.3e-67 Score=669.49 Aligned_cols=543 Identities=19% Similarity=0.235 Sum_probs=451.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 292 IKAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGI 371 (1496)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~ 371 (1496)
++.+++.+++.++...++.++..++..+.|++++.+++.+..... ....+.+++++++..++..++.....+...+.+.
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b5x_A 16 LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888999999999999999999998754221 1222233333455566677778888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039402 372 RMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAALFG 450 (1496)
Q Consensus 372 ~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~ 450 (1496)
++...++..+|+|.++++...++++++|+++|++++|++.+.+++ ..+..++..++.+++++++++..-+..+++.+++
T Consensus 95 ~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 174 (582)
T 3b5x_A 95 NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 5677888888888887777766555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 039402 451 TVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINL----RKRETGWLKKYVYTSAI 526 (1496)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~----R~~E~~~l~~~~~~~~~ 526 (1496)
+++.+++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+. ++.+.+..+........
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T 3b5x_A 175 APVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888999999999999999999999999999999999877776544 44444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 039402 527 SSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLV 606 (1496)
Q Consensus 527 ~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 606 (1496)
..++.... .+.++.++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++..
T Consensus 255 ~~~~~~~~--~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 332 (582)
T 3b5x_A 255 IQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGK 332 (582)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 33322222 2335567788888899999999999999999999999999999999999999999999997654322111
Q ss_pred cCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----
Q 039402 607 EKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 682 (1496)
Q Consensus 607 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~---- 682 (1496)
.+.......++++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 333 --~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 333 --YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409 (582)
T ss_pred --CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhh
Confidence 1111123469999999999632 367999999999999999999999999999999999999999999999983
Q ss_pred ---------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||||+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+|++|.+|||||||||
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred CCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 69999999999999999999986 4678889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
+||||++++|+++|||||||+||+++++.+.+ .+....+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998864 55666679999999999999888999999999999999999999988
Q ss_pred CcchHHHHHH
Q 039402 832 GTDFMELVGA 841 (1496)
Q Consensus 832 ~~~~~~~~~~ 841 (1496)
++.|.++...
T Consensus 569 ~~~~~~~~~~ 578 (582)
T 3b5x_A 569 DGAYAQLHRI 578 (582)
T ss_pred CcHHHHHHHH
Confidence 7778777654
No 15
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-67 Score=670.49 Aligned_cols=542 Identities=18% Similarity=0.227 Sum_probs=449.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRDFENEGYVLVSAFCVAKLVECLCQRFRVFRLQQLGIR 372 (1496)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 372 (1496)
..+++.+++.++...++.++..++..+.|++++.+++.+..... ....+.+++++++..++..++.....+...+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
T 3b60_A 17 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGK 95 (582)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999987653221 12222233334555666777777788888899999
Q ss_pred HHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039402 373 MRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADF-SWYIHDPWLVLFEVALSILILYKNLGIASLAALFGT 451 (1496)
Q Consensus 373 ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~-~~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~~~ 451 (1496)
+...++..+|+|.++++...++++++|+++|++++|++.+.++ ...+..++..++.+++++++++..-++.+++.++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 175 (582)
T 3b60_A 96 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175 (582)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 456778888888888877777665555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 039402 452 VIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINL----RKRETGWLKKYVYTSAIS 527 (1496)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~----R~~E~~~l~~~~~~~~~~ 527 (1496)
+++.++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+. ++.+.+..+.........
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (582)
T 3b60_A 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPII 255 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677778888889999999999999999999999999999999999887776554 444444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 039402 528 SFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVE 607 (1496)
Q Consensus 528 ~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 607 (1496)
.++.... .+.++.++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++...
T Consensus 256 ~~~~~~~--~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 333 (582)
T 3b60_A 256 QLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKR 333 (582)
T ss_dssp HHHHHHH--HHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCB
T ss_pred HHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 3222222 23345567777778899999999999999999999999999999999999999999999987654322111
Q ss_pred CCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----
Q 039402 608 KQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----- 682 (1496)
Q Consensus 608 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----- 682 (1496)
+.......++++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 334 --~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b60_A 334 --VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 410 (582)
T ss_dssp --CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB
T ss_pred --CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc
Confidence 111123469999999999632 267999999999999999999999999999999999999999999999983
Q ss_pred --------eEEEccCCccCCCcHHHHhccCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --------KAYVAQSPWIQSGKIEDNILFGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --------~~yv~Q~~~i~~~ti~eNI~~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||||+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~ 490 (582)
T 3b60_A 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490 (582)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH
T ss_pred CHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 69999999999999999999986 46788899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
||||++++|+++|||||||+||+++++.+.+ .+....+|+|+|+|||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b60_A 491 IARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569 (582)
T ss_dssp HHHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcC
Confidence 9999999999999999999999999998864 556666799999999999999889999999999999999999999888
Q ss_pred cchHHHHHH
Q 039402 833 TDFMELVGA 841 (1496)
Q Consensus 833 ~~~~~~~~~ 841 (1496)
+.|.++...
T Consensus 570 ~~~~~~~~~ 578 (582)
T 3b60_A 570 GVYAQLHKM 578 (582)
T ss_dssp SSHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888877653
No 16
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5e-67 Score=668.01 Aligned_cols=546 Identities=21% Similarity=0.251 Sum_probs=435.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039402 293 KAMFCSVWKDVLVTGFLTVLYTLASYVGPYLIDTFVQYLNGRRD-FE-NEGYVLVSAFCVAKLVECLCQRFRVFRLQQLG 370 (1496)
Q Consensus 293 ~al~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~~~~ 370 (1496)
..+++.+++.++...++.++..++..+.|++++.+++.+..... .. ...+.+++++++..++..++.....+...+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (595)
T 2yl4_A 11 LGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSG 90 (595)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888899999999999999999997653221 11 11222333344444556666666777788899
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhcCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039402 371 IRMRAALIAMIYNKGLTLSSQAKQGQSSGEIINFMTVDAERVADFS-WYIHDPWLVLFEVALSILILYKNLGIASLAALF 449 (1496)
Q Consensus 371 ~~ir~~L~~~iy~K~L~ls~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~pl~i~~~~~lL~~~lg~~~l~~l~ 449 (1496)
.++...++..+|+|.++++...++++++|+++|++++|++.+.+++ ..+..++..++.+++++++++..-++.+++.++
T Consensus 91 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 170 (595)
T 2yl4_A 91 QRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLS 170 (595)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999764 566777878887777777776655555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 039402 450 GTVIVMLVNIPLGRVQENFQDKLMKSKDERMKATSEILRNMRILKLQGWEMKFLSKIINLR----KRETGWLKKYVYTSA 525 (1496)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~~~~~i~~~R----~~E~~~l~~~~~~~~ 525 (1496)
+++++.++...+.+...+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.. +.+.+..+.......
T Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (595)
T 2yl4_A 171 VVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG 250 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777788888899999999999999999999999999999999998777765543 333333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 039402 526 ISSFVFWGAPTFVSVATFGTCILLNVPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL 605 (1496)
Q Consensus 526 ~~~~~~~~~p~~v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 605 (1496)
...++. ....+.++.++++.+.++.+++|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++..++.
T Consensus 251 ~~~~~~--~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 328 (595)
T 2yl4_A 251 ATGLSG--NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN 328 (595)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 222211 223344566788888889999999999999999999999999999999999999999999999765432211
Q ss_pred ccCCCCCCCCcc-EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--
Q 039402 606 VEKQPSGSSETA-LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-- 682 (1496)
Q Consensus 606 ~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-- 682 (1496)
....+....... ++++|++|+|+...++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i 408 (595)
T 2yl4_A 329 EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 408 (595)
T ss_dssp CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEET
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEh
Confidence 111111112345 99999999996432357999999999999999999999999999999999999999999999983
Q ss_pred -----------eEEEccCCccCCCcHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH
Q 039402 683 -----------KAYVAQSPWIQSGKIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ 747 (1496)
Q Consensus 683 -----------~~yv~Q~~~i~~~ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ 747 (1496)
++||+|+|+++++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 409 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq 488 (595)
T 2yl4_A 409 RQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488 (595)
T ss_dssp TTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred hhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHH
Confidence 699999999999999999999865 57888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHH
Q 039402 748 KQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 748 kqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
||||+||||++++|+++|||||||+||+++++.+. +.+....+++|+|+||||++.+..||+|++|++|++++.|+++|
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQ-EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH-HHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999988886 45666667999999999999988899999999999999999999
Q ss_pred HHhc-CcchHHHHHH
Q 039402 828 LINS-GTDFMELVGA 841 (1496)
Q Consensus 828 l~~~-~~~~~~~~~~ 841 (1496)
+++. +..|.++...
T Consensus 568 l~~~~~~~~~~~~~~ 582 (595)
T 2yl4_A 568 LLSKPNGIYRKLMNK 582 (595)
T ss_dssp ------C--------
T ss_pred HHhCCChHHHHHHHH
Confidence 9873 6667666543
No 17
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.4e-59 Score=609.94 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=152.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc-CCCCCccEE-EEcCeeEEEccCC-c-c
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL-KLCGTKAYVAQSP-W-I 692 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG-~~~~~~G~i-~~~g~~~yv~Q~~-~-i 692 (1496)
.+...|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+| .+. |.- .-..+++|++|++ . .
T Consensus 435 ~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEcccccccc
Confidence 466667788884 4579999999999999999999999999999999994 331 100 0011368999975 3 3
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCC
Q 039402 693 QSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772 (1496)
Q Consensus 693 ~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1496)
...|+.||+.+...-.+++.+++++..++..+. ..+...+||||||||++|||||+.+|+++||||||++
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~----------~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEM----------IAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHH----------HHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhh----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 456999999862110156667777777763222 1345578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE-EecChHHHH
Q 039402 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT-QAGKYNDLI 829 (1496)
Q Consensus 773 LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~G~~~~l~ 829 (1496)
||+.+..++.+. ++. .|+|+|+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 579 LD~~~~~~l~~~-L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 579 LDTVNVAWLVNY-LNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CCHHHHHHHHHH-HHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCHHHHHHHHHH-HHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999888754 444 68999999999999876 9999999999997 689887764
No 18
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.3e-61 Score=605.34 Aligned_cols=199 Identities=25% Similarity=0.332 Sum_probs=169.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
-.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.+ +.++
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 36999999999964 3799999999999999999999999999999999999999999986 2479
Q ss_pred EEEcccccc-cccchhhccCCC--CCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDPVM-FEGTVRSNLDPL--EES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp~L-F~gTIR~NLdp~--~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+|+||++.+ ++.|+++|+... ..+ ..+.+.++++..++.+.. |.+ ..+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRN----VEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSB----GGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCC----hhhCCHHHHHHHHHHHHHHh
Confidence 999999876 567999998532 111 234466777777765432 222 35799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||++|++ |++++.|+|+++++
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999864 48899999999999976 999999996 88889999999885
No 19
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-60 Score=594.66 Aligned_cols=198 Identities=25% Similarity=0.322 Sum_probs=167.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.+ +.+++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3699999999999999999999999999999999999999999986 24699
Q ss_pred EEcccccc-cccchhhccCCC--CCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL--EES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~--~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
|+||++.. +..|+++|+... ..+ ..+.+.+++++.++.+.. .....+||||||||++|||||+++
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-----------DREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 567999987532 111 234455666666654322 223357999999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
|++|||||||++||..+...|.+.|++.. .+.|||+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999864 38899999999999986 999999996 78889999999885
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.4e-60 Score=547.82 Aligned_cols=276 Identities=28% Similarity=0.425 Sum_probs=248.3
Q ss_pred HHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCC
Q 039402 1204 ACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTG 1283 (1496)
Q Consensus 1204 ~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTG 1283 (1496)
+++++..+.+++|+.++++.+++... ...+.+.++..|.|+|+||+|+|+++ .++|+||||+|++||++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKD---LPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCC---CTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSC
T ss_pred chhHHHHHHHHHHHHHHHhCCccccc---cccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCC
Confidence 46677888999999999875443221 11112223457899999999999754 569999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCc
Q 039402 1284 SGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1284 SGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~ 1362 (1496)
||||||+++|+|+++|++|+|.+||.|+..++.+++|++|++|||+|.+|++||++||.... ..++++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999997543 57899999999999999
Q ss_pred HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 039402 1363 DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT 1442 (1496)
Q Consensus 1363 ~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ 1442 (1496)
+++..+|+||||.++++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHHhh
Q 039402 1443 SVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEYTL 1484 (1496)
Q Consensus 1443 ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~~~ 1484 (1496)
++..||+|+||++|+|+|.|+|++|+++ ++.|++|++....
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 9999999999999999999999999975 6899999987654
No 21
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.5e-59 Score=605.37 Aligned_cols=212 Identities=25% Similarity=0.292 Sum_probs=157.9
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh----------------------cccCCCccEEEECCeeCCCCChH
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF----------------------RIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~----------------------rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
..+|+||||+|++||++||+|+||||||||+++++ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998754 333 3457899999998765532
Q ss_pred HHhccc-----------------------------------------EEEccccccc-----------------------
Q 039402 1318 DLRSRL-----------------------------------------SIIPQDPVMF----------------------- 1333 (1496)
Q Consensus 1318 ~LR~~i-----------------------------------------~iIpQdp~LF----------------------- 1333 (1496)
..+... ++++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 222211 2333332221
Q ss_pred ----------ccchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC-
Q 039402 1334 ----------EGTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS- 1401 (1496)
Q Consensus 1334 ----------~gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~- 1401 (1496)
.-|+++|++.+.... .++..++++.+++.+ ........+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 246777776443322 234555666665531 1223455789999999999999999886
Q ss_pred --CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCeEeEecChhhHhhcCC
Q 039402 1402 --KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1402 --~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
+||||||||++||+.+...|.+.|++.. .++|||+|+|+++.+..||||+|| ++|+|++.|+|+++.+.++
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998764 479999999999999899999999 8999999999999987766
Q ss_pred cHHHHHHHHH
Q 039402 1473 SSFSQLVAEY 1482 (1496)
Q Consensus 1473 s~F~~l~~~~ 1482 (1496)
.......+..
T Consensus 644 ~~~~~~~~~~ 653 (670)
T 3ux8_A 644 SHTGRYLKPI 653 (670)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 6655555444
No 22
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4e-58 Score=573.90 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=167.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.++++|++.+|.+ ..|++.||+|++||++||+|+||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 6899999999964 468889999999999999999999999999999999999999999876 3589
Q ss_pred EEcccccc-cccchhhccCCC-C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL-E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~-~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++||++.. +.+|+++|+... . ....+.+.++++..++.+.. .....+||||||||++|||||++
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-----------ESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-----------TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 578999998521 1 12234456667776665332 22345799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+...|.+.|++.. .++|||+|+|+++.+.. ||||+||++ |++...++|.++..
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 999999999999999999999999999864 47899999999999987 999999987 66777788887653
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-57 Score=569.57 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=164.8
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCC-----cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGG-----EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~G-----ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
++++++|+. ...+++|+||++++| |++||+|+||||||||+++|.|+.+|++|+. +. +.++
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 566788864 335899999999999 8899999999999999999999999999972 21 3469
Q ss_pred EEEccccc-ccccchhhccCC--CCC-CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDPV-MFEGTVRSNLDP--LEE-STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp~-LF~gTIR~NLdp--~~~-~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+++||++. .|.+|+++|+.. ... ...+...++++..++.+. .|. ...+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~----~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQ----EVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSS----BSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcC----ChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 578899999741 122 234556677888777543 222 235799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeC--CeEeEecChhhHhhc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNH--GLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~--G~IvE~g~p~~Ll~~ 1470 (1496)
+|+||||||||++||+.+...+.+.|++.. .+.|||+|+|+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998864 48999999999999987 999999997 999999999999964
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.9e-50 Score=455.67 Aligned_cols=240 Identities=32% Similarity=0.506 Sum_probs=224.0
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
+..|+++||+++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 45799999999995323569999999999999999999999999999999999999999999999999999998899999
Q ss_pred cEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+++||+|.+|++|+++|+.... ..+++++.++++.+++.+++..+|.||++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998543 45678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+||+||||||+||+.+.+.|.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++++.+.|++++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998767899999999999998899999999999999999999997767889888764
Q ss_pred H
Q 039402 1482 Y 1482 (1496)
Q Consensus 1482 ~ 1482 (1496)
.
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 3
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.5e-50 Score=466.14 Aligned_cols=261 Identities=26% Similarity=0.422 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCc
Q 039402 579 ISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSG 658 (1496)
Q Consensus 579 i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsG 658 (1496)
...+.++.++++|+.++++.++...+.....+.......++++|++|+|+. .+++|+|+||+|++||+++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 345677889999999998754322111111111122346999999999962 467999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhH
Q 039402 659 KSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKD 724 (1496)
Q Consensus 659 KSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d 724 (1496)
||||+++|+|+++|++|+|.++|. ++||+|+|++|++||+|||.+|.+ .+.++.+++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999984 799999999999999999999974 667888899999999999
Q ss_pred HHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCc
Q 039402 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEF 804 (1496)
Q Consensus 725 ~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 804 (1496)
++.+|.|++|.+|++|.+|||||||||+|||||+++|+|+|||||||+||+.++..+.+ .+..+.+++|+|+|||+++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA-SLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH-HHHHHHTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999998865 55666678999999999999
Q ss_pred cccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHHHh
Q 039402 805 LPAADLILVMKDGKITQAGKYNDLINSGTDFMELVGAH 842 (1496)
Q Consensus 805 l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 842 (1496)
+..||+|++|++|+|++.|+++++++.++.|.+++..+
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 98899999999999999999999999888888877543
No 26
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-49 Score=476.54 Aligned_cols=242 Identities=36% Similarity=0.676 Sum_probs=228.5
Q ss_pred CCCCCCCCcceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1235 RPNDSWPSHGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1235 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
.++..||..+.|+++||+++|+.+...+|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|.+||.|+..+
T Consensus 9 ~~~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 9 KKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI 87 (390)
T ss_dssp ---CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS
T ss_pred ccCcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC
Confidence 3455799999999999999997555679999999999999999999999999999999999998 999999999999999
Q ss_pred ChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1315 GLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1315 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
+.+++|+++++|||+|.+|++|+++|+.++....+++++++++.+++.+.....|.++++.++++|.+||||||||+|||
T Consensus 88 ~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 88 TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp CHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred ChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999998777889999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcH
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~ 1474 (1496)
|||+++|+||+||||||+||+.+...+++.|++..+++|+|+|+|+++.+..||||+||++|+|++.|+|+++++++...
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~ 247 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBH
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCch
Confidence 99999999999999999999999999999999887889999999999999899999999999999999999999988877
Q ss_pred HHH
Q 039402 1475 FSQ 1477 (1496)
Q Consensus 1475 F~~ 1477 (1496)
|..
T Consensus 248 ~va 250 (390)
T 3gd7_A 248 FVA 250 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 27
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5e-48 Score=441.67 Aligned_cols=237 Identities=32% Similarity=0.512 Sum_probs=219.4
Q ss_pred ceEEEEeEEeEeCCCC-CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1244 GKIDLLDLQVRYAPQM-PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~-~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
+.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++| +|+|.+||.|+...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 4699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred cEEEcccccccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+|+||+|.+|++|+++|+.... ..+++++.++++.+++.+++..+|+++|+.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999996432 34678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1402 KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1402 ~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+|||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999975 5778887764
Q ss_pred H
Q 039402 1482 Y 1482 (1496)
Q Consensus 1482 ~ 1482 (1496)
.
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-49 Score=445.24 Aligned_cols=233 Identities=32% Similarity=0.530 Sum_probs=216.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|+++++
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcccccccccchhhccCCC--CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1326 IPQDPVMFEGTVRSNLDPL--EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
+||+|.+|++|+++|+... ...+++++.++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+|
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999864 34678889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|+||||||+||+.+.+.|.+.|++..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ ...|++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999987678999999999999988999999999999999999999875 456666654
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.7e-48 Score=443.60 Aligned_cols=239 Identities=28% Similarity=0.439 Sum_probs=218.6
Q ss_pred cceEEEEeEEeEeCC-CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc
Q 039402 1243 HGKIDLLDLQVRYAP-QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~-~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1321 (1496)
.+.|+++||+++|+. ...++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 457999999999965 2245999999999999999999999999999999999999999999999999999888888999
Q ss_pred ccEEEcccccccccchhhccCCC-CCCcH-HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1322 RLSIIPQDPVMFEGTVRSNLDPL-EESTD-EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~gTIR~NLdp~-~~~sd-~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+|+||||+|.+|++|+++||... ....+ +++.+++++.++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999743 23344 67888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHH
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
+|+|||||||||+||+.+.+.|.+.|++..+ ++|||+|+|+++.+..||+|++|++|+|++.|+|++++++ .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7999999999999988999999999999999999999976 478888
Q ss_pred HHHHH
Q 039402 1478 LVAEY 1482 (1496)
Q Consensus 1478 l~~~~ 1482 (1496)
+++..
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87654
No 30
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-45 Score=479.81 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=164.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHH---------HHHhcccCCC------c------c
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLI---------QTLFRIVEPA------A------G 1302 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl---------~~L~rl~ep~------~------G 1302 (1496)
+.+++++++ ..+|+||||+|++||.+||+|+||||||||+ +.+.+...+. + +
T Consensus 588 ~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 588 ASLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp SEEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred ceEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 456666653 2479999999999999999999999999997 2333333222 2 3
Q ss_pred EEEECCeeCCCCCh----------HHHh-------------------------------cccEEEcccccccc-------
Q 039402 1303 QILIDGIDISLIGL----------HDLR-------------------------------SRLSIIPQDPVMFE------- 1334 (1496)
Q Consensus 1303 ~I~IDG~dI~~i~l----------~~LR-------------------------------~~i~iIpQdp~LF~------- 1334 (1496)
.|.+|+.++..... +++| +..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 46677766654321 1122 23577888776553
Q ss_pred --------------------------cchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1335 --------------------------GTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1335 --------------------------gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
.|+++|++.+.... .++..++|+.++|.. ..++..+.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHH
Confidence 24555554443322 234555666665531 23567788999999
Q ss_pred HHHHHHHHHHccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCCe
Q 039402 1388 RQLVCLGRVLLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHGL 1457 (1496)
Q Consensus 1388 rQll~LARALLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G~ 1457 (1496)
|||++|||||+++| +||||||||++||+.+.+.|++.|++.. +++|||+|+|+++.+..||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999876 7999999999999999999999998764 589999999999999999999999 8999
Q ss_pred EeEecChhhHhhcCCcHHHHHHH
Q 039402 1458 IEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1458 IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
|++.|+|++++++++++..++.+
T Consensus 891 Iv~~Gtpeel~~~~~syt~~~l~ 913 (916)
T 3pih_A 891 IVATGTPEEIAKNPHSYTGRFLK 913 (916)
T ss_dssp EEEEESHHHHHSCTTCHHHHHHT
T ss_pred EEEEcCHHHHHhCCchHHHHHHH
Confidence 99999999999988776666553
No 31
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-44 Score=467.33 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=164.4
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHH-HhcccC-------C----------------
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQT-LFRIVE-------P---------------- 1299 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~-L~rl~e-------p---------------- 1299 (1496)
..++++|+++ .+|+||||+|++||.+||+|+||||||||++. |++++. |
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4699999975 16999999999999999999999999999997 776542 2
Q ss_pred --Ccc-------EEEECCeeCCCCCh----------HHHhcccEEEccc-------------------------------
Q 039402 1300 --AAG-------QILIDGIDISLIGL----------HDLRSRLSIIPQD------------------------------- 1329 (1496)
Q Consensus 1300 --~~G-------~I~IDG~dI~~i~l----------~~LR~~i~iIpQd------------------------------- 1329 (1496)
.+| .|.|||.++..-+. +.+|..++.+|++
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 78999998865432 4455544443321
Q ss_pred ccc------------------------ccc-chhhccCC--------CCCCc-HHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1330 PVM------------------------FEG-TVRSNLDP--------LEEST-DEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1330 p~L------------------------F~g-TIR~NLdp--------~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
-.+ +.| ||.+|++. +.... .+++.++|++++|... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL----------R 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------B
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------c
Confidence 011 111 45555432 21111 2334555555554321 2
Q ss_pred cccCCCCCCchHHHHHHHHHHHccC---CCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKR---SKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVL 1451 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~---~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIl 1451 (1496)
.+.....||||||||++|||+|+++ |+||||||||++||..+.+.|.+.|++.. .+.|||+|+|+++.+..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 3455678999999999999999996 69999999999999999999999998764 5899999999999998899999
Q ss_pred EE------eCCeEeEecChhhHhhcCCcHHHHHHH
Q 039402 1452 LL------NHGLIEEFDNPANLLENKSSSFSQLVA 1480 (1496)
Q Consensus 1452 VL------~~G~IvE~g~p~~Ll~~~~s~F~~l~~ 1480 (1496)
+| ++|+|++.|+|+++++++.+.-.+..+
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l~ 838 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLR 838 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHHH
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHHH
Confidence 99 799999999999999876554334333
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.8e-46 Score=417.17 Aligned_cols=226 Identities=22% Similarity=0.409 Sum_probs=204.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974335699999999999999999999999999999999999999999999999 499
Q ss_pred EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
++||+|.+|.+|+++|+.......+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999754444455677888889998888888999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH---HhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1405 MLDEATASVDTATDNLIQQTLR---QHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~---~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
|||||||+||+.+.+.+.+.|+ +..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ .+.|.+++..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 228 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999995 33458999999999999888999999999999999999999875 5788888775
Q ss_pred Hhh
Q 039402 1482 YTL 1484 (1496)
Q Consensus 1482 ~~~ 1484 (1496)
+.+
T Consensus 229 ~~~ 231 (237)
T 2cbz_A 229 YAS 231 (237)
T ss_dssp TCC
T ss_pred HHh
Confidence 544
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-45 Score=412.53 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=199.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.+.|+++||+++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 357999999999975445699999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++|+||+|.+|++|+++|+.......+....++++.+++.+.+..+|.+.++.+++.+.+||||||||++|||||+++|+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997544445556777889999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHH
Q 039402 1403 ILMLDEATASVDTATDNLIQQTL-RQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQL 1478 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I-~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l 1478 (1496)
+|+||||||+||+.+.+.+.+.+ ++..+++|||+|+|+++.+..||+|++|++|++++.|+|++++++ .+.|.++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999974 554468999999999999888999999999999999999999864 3445554
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.8e-45 Score=411.57 Aligned_cols=220 Identities=39% Similarity=0.696 Sum_probs=197.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ 695 (1496)
..++++|++++|+. +++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+++|++|+|++++.
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 36899999999953 24689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|++|||.++....+.++.++++.+++.+.++.+|.+++|.+++++.+|||||||||+||||++++|+++|||||||+||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999876666667778888899888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchH
Q 039402 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 776 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++.+.+++.++....+++|+|++||+++.+..||++++|++|++++.|+++++.+....+.
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 9998887644433445899999999999887799999999999999999999876544443
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.4e-45 Score=410.54 Aligned_cols=222 Identities=49% Similarity=0.883 Sum_probs=199.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGK 696 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~t 696 (1496)
.++++|++++|+. .++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.++||+|+|++++.|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 4889999999952 246799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 039402 697 IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAH 776 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~ 776 (1496)
++|||.++....+++++++.+.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+++|||||||+||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 99999998765556677888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHH
Q 039402 777 TGSHLFQEVL--LGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELV 839 (1496)
Q Consensus 777 ~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 839 (1496)
+...+++.+. ....+++|+|+|||+++.+..||++++|++|++++.|+++++.+....|.++.
T Consensus 162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp HHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 9988876543 23345899999999999987899999999999999999999987766666554
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.5e-44 Score=420.70 Aligned_cols=224 Identities=27% Similarity=0.417 Sum_probs=195.4
Q ss_pred cceEEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH--
Q 039402 1243 HGKIDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-- 1318 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-- 1318 (1496)
...|+++||+++|+... ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.++
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 35999999999999999999999999999999999999999999999999999998765
Q ss_pred -HhcccEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1319 -LRSRLSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1319 -LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+|++||+|||+|.+|.. ||++|+... ...+ ++++.++|+.++|.+...+. ..+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHH
Confidence 47899999999999876 999999521 1222 34577889999887654333 3578999999
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhh
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|++|||||+.+|+||+||||||+||+.+.+.|.+.|++.. .++|||+|||+++.+.. ||||+||++|+|++.|+|++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999864 38999999999999986 99999999999999999999
Q ss_pred HhhcCCcHHHH
Q 039402 1467 LLENKSSSFSQ 1477 (1496)
Q Consensus 1467 Ll~~~~s~F~~ 1477 (1496)
++.++...+.+
T Consensus 251 v~~~p~~~~~~ 261 (366)
T 3tui_C 251 VFSHPKTPLAQ 261 (366)
T ss_dssp HHSSCCSHHHH
T ss_pred HHhCCCcHHHH
Confidence 99887765543
No 37
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.8e-43 Score=397.44 Aligned_cols=222 Identities=29% Similarity=0.425 Sum_probs=199.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. +++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46899999999942 1357999999999999999999999999999999999999999999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
++||+|+|.+++.|++|||.++.+ .++++..++++.+++.+.++.+|.|.++.+++++.+|||||||||+|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 699999999998999999999753 4567778889999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc-CcchHHHH
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS-GTDFMELV 839 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~ 839 (1496)
+++|||||||+||+.+...+.+. +..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~-l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~ 242 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHH
Confidence 99999999999999999988754 4444579999999999998878999999999999999999999876 55565544
No 38
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.3e-44 Score=409.55 Aligned_cols=214 Identities=29% Similarity=0.417 Sum_probs=187.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1322 (1496)
.|+++||+++|+.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999654 35999999999999999999999999999999999999999999999999994 3345678999
Q ss_pred cEEEcccc--cccccchhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDP--VMFEGTVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
||+|||+| .+|..|+++|+... ...+ ++.+.++|+.+++.+...+. ..+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-----------THCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------cccCCHHHHHHHHH
Confidence 99999998 57888999999521 1222 34577889998886543332 35789999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
||||+.+|+|||||||||+||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||||++|++|++++.|+|++++++
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 28999999999999976 999999999999999999999865
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.9e-44 Score=400.67 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=183.0
Q ss_pred EEEEeEEeEeCCCC--CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH----
Q 039402 1246 IDLLDLQVRYAPQM--PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL---- 1319 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~--~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L---- 1319 (1496)
|+++||+++|+.+. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 359999999999999999999999999999999999999999999999999999987764
Q ss_pred hcccEEEccccccccc-chhhccCC----C--CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDP----L--EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQR 1388 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp----~--~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQr 1388 (1496)
|+++++|||+|.+|.+ |+++|+.. . ...+ .+++.++++.+++.+... ......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh----------hCChhhCCHHHH
Confidence 4569999999999987 99999852 1 1222 345677888888764321 123467999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
||++|||||+++|+|||||||||+||+.+...+.+.|++..+ ++|||+|+|+++....||||++|++|+|++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988643 899999999999777799999999999999999888
Q ss_pred Hh
Q 039402 1467 LL 1468 (1496)
Q Consensus 1467 Ll 1468 (1496)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 64
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8e-43 Score=398.63 Aligned_cols=222 Identities=30% Similarity=0.486 Sum_probs=198.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++|+....+++|+|+||+|++||+++|+||||||||||+++|+|.++| +|+|.++|. +
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999632225799999999999999999999999999999999999987 899999883 6
Q ss_pred EEEccCCccCCCcHHHHhccCCC-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 AYVAQSPWIQSGKIEDNILFGKE-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~yv~Q~~~i~~~ti~eNI~~g~~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
+||+|+|.+++.|++|||.++.. .+++++.++++.+++.+.++.+|.+.+|.+++++.+|||||||||+|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999753 45667778888889988888899999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHHHH
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMELVG 840 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~ 840 (1496)
++|||||||+||+.+...+.+ ++..+.+++|+|+|||+++.+..||+|++|++|++++.|+++++......|.++..
T Consensus 176 lllLDEPts~LD~~~~~~i~~-~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQK-AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 999999999999999888865 55555568999999999999888999999999999999999999876666665543
No 41
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-43 Score=395.55 Aligned_cols=213 Identities=22% Similarity=0.399 Sum_probs=182.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHH-hccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDL-RSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1323 (1496)
.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 469999999999999999999999999999999999999999999999999988887665 4569
Q ss_pred EEEccccccccc-chhhccCCCC--CCcH----HHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLE--ESTD----EQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~--~~sd----~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+++||+|.+|.+ |+++|+.... ..++ +.+.++++..+ |++........+||||||||++||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999988 9999996321 1122 23444444442 23333444567899999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|+++|+||+||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999999998865 58999999999988765 99999999999999999999985
No 42
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-43 Score=398.41 Aligned_cols=217 Identities=28% Similarity=0.482 Sum_probs=195.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KA 684 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~ 684 (1496)
++++|++++|+ +++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~y~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSS--SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeC--CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 68899999994 2467999999999999999999999999999999999999999999999883 58
Q ss_pred EEccCCccCCCcHHHHhccC-C-CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 685 YVAQSPWIQSGKIEDNILFG-K-EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 685 yv~Q~~~i~~~ti~eNI~~g-~-~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
||+|+|.+++.|++|||.++ . ..++++..++++.+++.+.++.+|.|.++.+++++.+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 3 356677888899999988899999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHH
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFME 837 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 837 (1496)
++|||||||+||+.+.+.+.+. +..+.+|+|+|+|||+++.+..||+|++|++|++++.|+++++......+.+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 233 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKA-LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHH-HHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHH
Confidence 9999999999999999988754 4444479999999999998877999999999999999999998765433433
No 43
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.6e-42 Score=444.16 Aligned_cols=213 Identities=25% Similarity=0.315 Sum_probs=157.6
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh-ccc----C---CCcc-------------
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RIV----E---PAAG------------- 1302 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~-rl~----e---p~~G------------- 1302 (1496)
..++++|++. .+|+||||+|++||.+||+|+||||||||++.|+ +.+ . +..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 4699999862 2699999999999999999999999999999854 322 1 1233
Q ss_pred EEEECCeeCCCCCh----------HHHh---------cccEEEcccccc---------------------c---------
Q 039402 1303 QILIDGIDISLIGL----------HDLR---------SRLSIIPQDPVM---------------------F--------- 1333 (1496)
Q Consensus 1303 ~I~IDG~dI~~i~l----------~~LR---------~~i~iIpQdp~L---------------------F--------- 1333 (1496)
.|.|||.+|..-.. +..| +++||+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 48899988853221 1222 235788885321 0
Q ss_pred ----------------c---------cchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCccc-ccccCCCCCCch
Q 039402 1334 ----------------E---------GTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDS-KVTENGENWSMG 1386 (1496)
Q Consensus 1334 ----------------~---------gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt-~v~e~G~nLS~G 1386 (1496)
. -|+++|+..+.... .++..++|++++| +. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL-----------~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL-----------GYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTC-----------SSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCC-----------CcccccCchhhCCHH
Confidence 1 13333333222221 1223444555544 32 344556789999
Q ss_pred HHHHHHHHHHHccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCC
Q 039402 1387 QRQLVCLGRVLLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHG 1456 (1496)
Q Consensus 1387 QrQll~LARALLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G 1456 (1496)
||||++|||||+++| +||||||||++||+.+.+.|.+.|++.. ++.|||+|+|+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999889999999 799
Q ss_pred eEeEecChhhHhhcCCcH
Q 039402 1457 LIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1457 ~IvE~g~p~~Ll~~~~s~ 1474 (1496)
+|++.|+|+++++++.+.
T Consensus 930 ~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp SEEEEESHHHHHTCTTCH
T ss_pred EEEEecCHHHHHhCchhH
Confidence 999999999999766554
No 44
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-42 Score=396.82 Aligned_cols=217 Identities=28% Similarity=0.429 Sum_probs=189.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1322 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ......+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 5999999999953 35999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred cEEEccccccccc-chhhccCCC----CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPL----EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
+++|||+|.+|.. |+++|+... ...+ ++++.++++++++.+...+ ...+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999987 999998631 1222 3457788999888654322 235799999999999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
||||+.+|++||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+++++++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 47899999999999875 9999999999999999999999765
Q ss_pred CcH
Q 039402 1472 SSS 1474 (1496)
Q Consensus 1472 ~s~ 1474 (1496)
...
T Consensus 251 ~~~ 253 (263)
T 2olj_A 251 QHE 253 (263)
T ss_dssp CSH
T ss_pred ccH
Confidence 443
No 45
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-42 Score=396.06 Aligned_cols=224 Identities=26% Similarity=0.401 Sum_probs=195.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996322367999999999999999999999999999999999999999999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCCC-CH-HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEM-NR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~-~~-~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
++||+|+|.+++.|++|||.++... .. ++..+.++..++.+.++.+|.|.++..++++.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999998542 22 444555666677788889988888999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcCcchHHH
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS--SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSGTDFMEL 838 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 838 (1496)
|+++|||||||+||+.+...+.+ ++..+.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++......|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 99999999999999999888865 4555433 89999999999988789999999999999999999998776666655
Q ss_pred HH
Q 039402 839 VG 840 (1496)
Q Consensus 839 ~~ 840 (1496)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 46
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-42 Score=396.74 Aligned_cols=213 Identities=21% Similarity=0.296 Sum_probs=190.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.+.+|++++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 6999999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccc-cccchhhccCCC----C-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1325 IIPQDPVM-FEGTVRSNLDPL----E-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1325 iIpQdp~L-F~gTIR~NLdp~----~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
++||++.+ |..|+++|+... . ...++++.++++++++.+...+. ..+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD-----------YRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSB-----------GGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCC-----------cccCCHHHHHHHHHHHHHh
Confidence 99999976 667999998532 1 23356788999999886543222 2469999999999999999
Q ss_pred c------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1399 K------RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1399 r------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+ +|++||||||||+||+.+.+.+.+.|++..+ ++|||+|+|+++.+.. ||||++|++|++++.|+|+++++
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999988643 5799999999999875 99999999999999999999985
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 3
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.4e-43 Score=402.85 Aligned_cols=210 Identities=22% Similarity=0.364 Sum_probs=178.1
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.+.|+++||+++| .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 4579999999864 3599999999999999999999999999999999999999999999998 5
Q ss_pred cEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1323 LSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1323 i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++|+||+|.+|++|+++|+. ...+.+..+.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998 33344556677888999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhc
Q 039402 1403 ILMLDEATASVDTATDNLIQQTL-RQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1403 ILiLDEaTsslD~~Td~~Iq~~I-~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
+|+||||||+||+.+...+.+.+ ++..+++|||+|+|+++.+..||+|++|++|++++.|+|+++++.
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99999999999999999999874 444468999999999999888999999999999999999999863
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-42 Score=390.47 Aligned_cols=214 Identities=24% Similarity=0.412 Sum_probs=188.8
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
-+.|+++||+++|.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 367999999999963 369999999999999999999999999999999999999999999999999976 45678899
Q ss_pred cEEEccccccccc-chhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
++++||+|.+|.+ |+++|+.... ..+ ++++.++++.+++.+...+ ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999887 9999996321 122 2457788998888655433 2357999999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|+|+++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998864 47999999999999987 999999999999999999999754
No 49
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.5e-42 Score=406.13 Aligned_cols=221 Identities=23% Similarity=0.333 Sum_probs=191.5
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC--CChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL--IGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~ 1322 (1496)
.|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.. ......|++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999933 223445788
Q ss_pred cEEEccccccccc-chhhccCCCC---CC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1323 LSIIPQDPVMFEG-TVRSNLDPLE---ES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1323 i~iIpQdp~LF~g-TIR~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
||+|||++.+|.. ||++|+.... .. .++++.++|+.++|.+...+.| .+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999976 9999996421 11 2356788999999876554444 46899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
|||+++|++|+||||||+||+.+...+++.|++.. .++|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999988776643 48999999999999876 9999999999999999999999988
Q ss_pred CcHHHHH
Q 039402 1472 SSSFSQL 1478 (1496)
Q Consensus 1472 ~s~F~~l 1478 (1496)
...|...
T Consensus 231 ~~~~~a~ 237 (359)
T 3fvq_A 231 ADLDAAL 237 (359)
T ss_dssp SCHHHHH
T ss_pred ccHHHHH
Confidence 7777544
No 50
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.6e-41 Score=436.64 Aligned_cols=213 Identities=24% Similarity=0.338 Sum_probs=154.2
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh-cc----cC---CCccE------------
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RI----VE---PAAGQ------------ 1303 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~-rl----~e---p~~G~------------ 1303 (1496)
..++++|++. .+|+||||+|++||.+||+|+||||||||+++|+ +. +. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3689999862 2799999999999999999999999999999853 32 21 23343
Q ss_pred -EEECCeeCCCCCh----------HHHh---------cccEEEcccccc---------------------c---------
Q 039402 1304 -ILIDGIDISLIGL----------HDLR---------SRLSIIPQDPVM---------------------F--------- 1333 (1496)
Q Consensus 1304 -I~IDG~dI~~i~l----------~~LR---------~~i~iIpQdp~L---------------------F--------- 1333 (1496)
|.||+.+|..-.. +..| ++.++.||...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 5666666642211 1222 345777775321 0
Q ss_pred ----------------cc-chhh--------ccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCccc-ccccCCCCCCch
Q 039402 1334 ----------------EG-TVRS--------NLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDS-KVTENGENWSMG 1386 (1496)
Q Consensus 1334 ----------------~g-TIR~--------NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt-~v~e~G~nLS~G 1386 (1496)
.| +|.+ |+..+.... ..+..++|++++ |+. ..+.....||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lg-----------L~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVG-----------LGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTT-----------GGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcC-----------CCcccccCccccCCHH
Confidence 01 2223 222222111 112233444443 333 345566789999
Q ss_pred HHHHHHHHHHHccCC---CEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEE------eCC
Q 039402 1387 QRQLVCLGRVLLKRS---KILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLL------NHG 1456 (1496)
Q Consensus 1387 QrQll~LARALLr~~---~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL------~~G 1456 (1496)
||||++|||||+++| +||||||||++||+.+.+.|.+.|++.. .+.|||+|+|+++.+..||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998754 589999999999999889999999 689
Q ss_pred eEeEecChhhHhhcCCcH
Q 039402 1457 LIEEFDNPANLLENKSSS 1474 (1496)
Q Consensus 1457 ~IvE~g~p~~Ll~~~~s~ 1474 (1496)
+|++.|+|+++++++.+.
T Consensus 948 ~Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPASY 965 (993)
T ss_dssp EEEEEECHHHHHHCTTCH
T ss_pred EEEEecCHHHHHhCCHHH
Confidence 999999999999876543
No 51
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-42 Score=393.11 Aligned_cols=212 Identities=25% Similarity=0.327 Sum_probs=187.7
Q ss_pred EEEEeEEeEeCCCC---CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1246 IDLLDLQVRYAPQM---PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~---~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
|+++||+++|..+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 79999999996222 3699999999999999999999999999999999999999999999999998742 67889
Q ss_pred cEEEcccc--cccccchhhccCCCC------CCcHHHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1323 LSIIPQDP--VMFEGTVRSNLDPLE------ESTDEQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1323 i~iIpQdp--~LF~gTIR~NLdp~~------~~sd~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++||+| .++..|+++|+.... +..++++.++++.+++. +...+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 567889999996321 12256788999999998 6654443 468999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhc
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998864 47999999999999986 999999999999999999999875
Q ss_pred C
Q 039402 1471 K 1471 (1496)
Q Consensus 1471 ~ 1471 (1496)
+
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 4
No 52
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-42 Score=392.16 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=189.8
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC----------C
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL----------I 1314 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----------i 1314 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999963 359999999999999999999999999999999999999999999999999862 4
Q ss_pred Ch---HHHhcccEEEccccccccc-chhhccCCC----CCCc----HHHHHHHHHHcCCcHH-HHhccCCcccccccCCC
Q 039402 1315 GL---HDLRSRLSIIPQDPVMFEG-TVRSNLDPL----EEST----DEQIWEALDKCQLGDE-VRKKEGKLDSKVTENGE 1381 (1496)
Q Consensus 1315 ~l---~~LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~eI~~aL~~~~L~~~-i~~lp~gLdt~v~e~G~ 1381 (1496)
+. ..+|+++++|||++.+|.. |+++|+... ...+ ++++.++++++++.+. ..+. ..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------PV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------GG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------cc
Confidence 43 3568889999999999987 999999631 1222 3457889999999876 4433 34
Q ss_pred CCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEe
Q 039402 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1382 nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 689999999999999999999999999999999999999999998864 47899999999999875 9999999999999
Q ss_pred EecChhhHhhcCCcHH
Q 039402 1460 EFDNPANLLENKSSSF 1475 (1496)
Q Consensus 1460 E~g~p~~Ll~~~~s~F 1475 (1496)
+.|+|+++++++...+
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999987654433
No 53
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.5e-42 Score=407.65 Aligned_cols=218 Identities=20% Similarity=0.340 Sum_probs=193.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999988765 46799
Q ss_pred EEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|+|++.+|.. ||++|+... ...+ ++++.++|+.+++.+...+.| .+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHH
Confidence 99999999976 999999731 1222 345778899998876544443 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 9999999999999999999999999999988653 7999999999999876 999999999999999999999998877
Q ss_pred HHHH
Q 039402 1474 SFSQ 1477 (1496)
Q Consensus 1474 ~F~~ 1477 (1496)
.|..
T Consensus 228 ~~v~ 231 (381)
T 3rlf_A 228 RFVA 231 (381)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.7e-42 Score=397.91 Aligned_cols=210 Identities=39% Similarity=0.693 Sum_probs=176.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG 695 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ 695 (1496)
..++++|+++.+ +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|+++|++|+|.++++
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 458899998852 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|++|||. +......++.+.++.+++.+.++.+|.++++.+++++.+|||||||||+|||||+++|+++|||||||+||+
T Consensus 114 tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 114 TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 9999998 655555566677888889888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhc
Q 039402 776 HTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 776 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
.+...+++.++....+++|+|+|||+++.+..||++++|++|++++.|+++++...
T Consensus 193 ~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99988876433333458999999999998877999999999999999999988653
No 55
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.5e-42 Score=390.38 Aligned_cols=209 Identities=24% Similarity=0.281 Sum_probs=182.4
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH-HHhccc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH-DLRSRL 1323 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1323 (1496)
.|+++||+++|.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.. ..|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999877654 467889
Q ss_pred EEEcccccccc-cchhhccCCC--C---C-----------Cc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCC
Q 039402 1324 SIIPQDPVMFE-GTVRSNLDPL--E---E-----------ST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN 1382 (1496)
Q Consensus 1324 ~iIpQdp~LF~-gTIR~NLdp~--~---~-----------~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n 1382 (1496)
+++||+|.+|. .|+++|+... . . .+ .+++.++++.+++.+... ....+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----------RKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----------CCchh
Confidence 99999999886 5999998531 1 1 11 235677888887754432 23457
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 37999999999999875 99999999999999
Q ss_pred ecChhh
Q 039402 1461 FDNPAN 1466 (1496)
Q Consensus 1461 ~g~p~~ 1466 (1496)
.|+|++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-42 Score=386.24 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=183.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++||+++|++ +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..|+++++
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999997643 45788999
Q ss_pred Eccccccccc-chhhccCCCCC-C----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1326 IPQDPVMFEG-TVRSNLDPLEE-S----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~~~-~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
+||+|.+|.. |+++|+..... + .++++.++++.+++.+...+. ..+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 9999999987 99999964321 1 245678888888876543332 35799999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcC
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENK 1471 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~ 1471 (1496)
+|++|+||||||+||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+|+++++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988643 7899999999998865 9999999999999999999998765
No 57
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.2e-42 Score=383.65 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=179.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH---Hh-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD---LR- 1320 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR- 1320 (1496)
.|+++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred cccEEEccccccccc-chhhccCCC---CCC----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1321 SRLSIIPQDPVMFEG-TVRSNLDPL---EES----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++++++||+|.+|.. |+++|+... ... .++++.++++.+++.+...+ ...+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-----------KPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 789999999998875 999998531 111 23457788888887654322 23579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeEeEecC
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~ 1463 (1496)
|||||+.+|++|+|||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 4799999999999887799999999999999886
No 58
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7e-42 Score=394.04 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=186.0
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC--CCChHHHhc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS--LIGLHDLRS 1321 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~ 1321 (1496)
..|+++||+++|.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+..++|+
T Consensus 20 ~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 35999999999964 36999999999999999999999999999999999999999999999999998 777888999
Q ss_pred ccEEEcccccc-ccc--chhhccCCCC--------CCc---HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH
Q 039402 1322 RLSIIPQDPVM-FEG--TVRSNLDPLE--------EST---DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ 1387 (1496)
Q Consensus 1322 ~i~iIpQdp~L-F~g--TIR~NLdp~~--------~~s---d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ 1387 (1496)
+|+++||+|.+ |.. |+++|+.... ... ++++.++++.+++.+...+ ...+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-----------YIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHH
Confidence 99999999975 555 9999996321 112 2457788888887654322 235799999
Q ss_pred HHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEE--EEEccCcchhcc-cCEEEEEeCCeEeEecC
Q 039402 1388 RQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTV--LTIAHRITSVID-SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1388 rQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TV--I~IAHRl~ti~~-~DrIlVL~~G~IvE~g~ 1463 (1496)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|| |+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999987643 7899 999999999865 99999999999999999
Q ss_pred hhhHhhc
Q 039402 1464 PANLLEN 1470 (1496)
Q Consensus 1464 p~~Ll~~ 1470 (1496)
+++++++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9999753
No 59
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2e-41 Score=401.16 Aligned_cols=217 Identities=21% Similarity=0.386 Sum_probs=191.9
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 999999642 1 222 246788999999876655444 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999865 999999999999999999999988776
Q ss_pred HHH
Q 039402 1474 SFS 1476 (1496)
Q Consensus 1474 ~F~ 1476 (1496)
.|.
T Consensus 228 ~~~ 230 (359)
T 2yyz_A 228 MFV 230 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 60
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-41 Score=401.64 Aligned_cols=218 Identities=25% Similarity=0.431 Sum_probs=191.9
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 479999999999322 359999999999999999999999999999999999999999999999999987654 47789
Q ss_pred EEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
++|||++.+|.. |+++|+... ...+ ++++.++|+.+++.+...+.| .+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999999999986 999999631 1122 356788999999876654444 468999999999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCC
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKS 1472 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~ 1472 (1496)
||+++|+||+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988653 7899999999999876 99999999999999999999998876
Q ss_pred cHH
Q 039402 1473 SSF 1475 (1496)
Q Consensus 1473 s~F 1475 (1496)
..|
T Consensus 239 ~~~ 241 (355)
T 1z47_A 239 TLF 241 (355)
T ss_dssp SHH
T ss_pred chH
Confidence 665
No 61
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=403.91 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=196.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. +++++|+|+||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|+
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999953 24689999999999999999999999999999999999998 9999999983
Q ss_pred eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 683 KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++||+|++.+|..|++||+.+.....+++..++++.+++.+.++..|.+.+|.++++|.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999766677888899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
++|||||||+||+.....+.+ .++...+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..
T Consensus 176 lLLLDEPts~LD~~~~~~l~~-~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRR-TLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHH-HHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred EEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999888865 445555689999999999888889999999999999999999998754
No 62
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-41 Score=402.44 Aligned_cols=217 Identities=22% Similarity=0.362 Sum_probs=191.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+ +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 4899999999954 3599999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+... ...+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999986 999999631 1122 345788999998876544443 4689999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999998865 999999999999999999999988776
Q ss_pred HHH
Q 039402 1474 SFS 1476 (1496)
Q Consensus 1474 ~F~ 1476 (1496)
.|.
T Consensus 228 ~~~ 230 (362)
T 2it1_A 228 KFV 230 (362)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 63
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-41 Score=399.96 Aligned_cols=215 Identities=23% Similarity=0.362 Sum_probs=190.6
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
|+++|++++|.. . +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++|++
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999987554 4778999
Q ss_pred Eccccccccc-chhhccCCC----CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1326 IPQDPVMFEG-TVRSNLDPL----EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1326 IpQdp~LF~g-TIR~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
|||++.+|.. |+++|+... +...++++.++|+.+++.+...+.| .+||||||||++|||||+++
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcC
Confidence 9999999987 999999631 1122377889999999876544443 46899999999999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCcHHH
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSSSFS 1476 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~ 1476 (1496)
|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++...|.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 999999999999999999999999988643 7899999999998865 999999999999999999999988776663
No 64
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.4e-41 Score=400.05 Aligned_cols=216 Identities=20% Similarity=0.348 Sum_probs=186.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.+ +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999964 3599999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEccccccccc-chhhccCCCC---CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE---EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
+|||++.+|.. |+++|+.... ..+ ++++.++|+.++|.+...+.| .+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999996421 122 245788999999876654444 4789999999999999
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhhcCCc
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLENKSS 1473 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~~~~s 1473 (1496)
|+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999865 999999999999999999999988776
Q ss_pred HH
Q 039402 1474 SF 1475 (1496)
Q Consensus 1474 ~F 1475 (1496)
.|
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 65
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-41 Score=402.85 Aligned_cols=219 Identities=20% Similarity=0.326 Sum_probs=191.4
Q ss_pred eEEEEeEEeEeCCCCCc--cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC---hHHH
Q 039402 1245 KIDLLDLQVRYAPQMPL--VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG---LHDL 1319 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~--vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1319 (1496)
.|+++||+++|.. .. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 34 999999999999999999999999999999999999999999999999987521 3345
Q ss_pred hcccEEEccccccccc-chhhccCCC-C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1320 RSRLSIIPQDPVMFEG-TVRSNLDPL-E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1320 R~~i~iIpQdp~LF~g-TIR~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
|++|++|||++.+|.. |+++|+... . ..+ ++++.++|+.++|.+...+.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 7889999999999987 999999632 1 122 346788999999876654444 46899999999
Q ss_pred HHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1392 CLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1392 ~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
+|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988643 7899999999999876 9999999999999999999999
Q ss_pred hcCCcHHH
Q 039402 1469 ENKSSSFS 1476 (1496)
Q Consensus 1469 ~~~~s~F~ 1476 (1496)
+++...|.
T Consensus 230 ~~p~~~~~ 237 (353)
T 1oxx_K 230 DNPVSIQV 237 (353)
T ss_dssp HSCSSHHH
T ss_pred hCcccHHH
Confidence 88766653
No 66
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.1e-41 Score=382.32 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=187.0
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
-|+++||+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ |+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 4999999999999999999999999999999999999999 99999999998888888999999
Q ss_pred EEccccccccc-chhhccCCCC--CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC
Q 039402 1325 IIPQDPVMFEG-TVRSNLDPLE--ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS 1401 (1496)
Q Consensus 1325 iIpQdp~LF~g-TIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~ 1401 (1496)
|+||+|.+|.+ |+++|+.... ..+++++.++++.+++.+...+ ...+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998876 9999996432 1247788999999998765332 34579999999999999999999
Q ss_pred C-------EEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhh
Q 039402 1402 K-------ILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1402 ~-------ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
+ +|+||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+. .||+|++|++|++++.|+|+++++
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998864 4789999999999985 599999999999999999999975
No 67
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.3e-41 Score=383.52 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=175.3
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHH-hc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~ 1321 (1496)
.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.|+...+.++. |.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999964 4699999999999999999999999999999999999 88999999999999998887765 45
Q ss_pred ccEEEccccccccc-chhhccCCC-----CC-Cc----HHHHHHHHHHcCCc-HHHHhccCCcccccccCCCC-CCchHH
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL-----EE-ST----DEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGEN-WSMGQR 1388 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~-----~~-~s----d~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~n-LS~GQr 1388 (1496)
.++++||+|.+|.+ |+++|+... +. .. ++++.++++++++. +... .++ .. ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-------RYL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-------SBT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-------CCc----ccCCCHHHH
Confidence 69999999999987 999998521 11 11 24567788888874 3322 222 34 999999
Q ss_pred HHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecChh
Q 039402 1389 QLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDNPA 1465 (1496)
Q Consensus 1389 Qll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~p~ 1465 (1496)
||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|+
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999875 47899999999999886 5999999999999999998
No 68
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-40 Score=381.06 Aligned_cols=202 Identities=25% Similarity=0.414 Sum_probs=171.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+. ..++|+||||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36899999999952 346999999999999999999999999999999999999999999999883
Q ss_pred --eEEEccCC--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 --KAYVAQSP--WIQSGKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 --~~yv~Q~~--~i~~~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|||+|+| .++..|++|||.|+.. .+. ++.+++++.+++.+ ...+.+.+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHH
Confidence 69999998 4678899999998632 232 23444555555432 23466789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+|||||+.+|+++|||||||+||+.+...+++. +..+. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL-LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHH-HHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999988764 44433 48999999999999865 999999999999999999998
Q ss_pred Hhc
Q 039402 829 INS 831 (1496)
Q Consensus 829 ~~~ 831 (1496)
...
T Consensus 232 ~~~ 234 (275)
T 3gfo_A 232 FAE 234 (275)
T ss_dssp THH
T ss_pred hcC
Confidence 764
No 69
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=7.8e-41 Score=398.81 Aligned_cols=216 Identities=20% Similarity=0.385 Sum_probs=189.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC------CChHH
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL------IGLHD 1318 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~------i~l~~ 1318 (1496)
.|+++||+++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 4899999999954 359999999999999999999999999999999999999999999999999876 443
Q ss_pred HhcccEEEccccccccc-chhhccCCC---CCCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPL---EEST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQL 1390 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQl 1390 (1496)
.+++|++|||++.+|.. |+++|+... ...+ ++++.++|+.++|.+...+.| .+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence 36789999999999975 999999631 1122 345788899998876544443 4689999999
Q ss_pred HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhH
Q 039402 1391 VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1391 l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
++|||||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999875 999999999999999999999
Q ss_pred hhcCCcHH
Q 039402 1468 LENKSSSF 1475 (1496)
Q Consensus 1468 l~~~~s~F 1475 (1496)
++++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 98877766
No 70
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9e-41 Score=376.18 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=164.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 618 LDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 618 i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 68999999996322 246999999999999999999999999999999999999999999999982
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC------CCCHHH----HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK------EMNRER----YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~------~~~~~~----~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++||+|+|.++.. |++||+.++. ....+. ..++++.+++.+. ..++.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 7999999998765 9999998742 222222 2223333333211 12567889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccccCCEEEEEeCCeEEEecChHH
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|||+|||||+++|+++|||||||+||+.+...+++.+.+...+ |+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999987644333233 899999999999776799999999999999988766
Q ss_pred H
Q 039402 828 L 828 (1496)
Q Consensus 828 l 828 (1496)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 71
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.9e-40 Score=380.41 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=181.6
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc--cCCCccEEEECCeeCCCCChHHH-hc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI--VEPAAGQILIDGIDISLIGLHDL-RS 1321 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~ 1321 (1496)
.|+++||+++|.. .++|+||||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.|+...+.... |.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 4699999999999999999999999999999999999 57899999999999988887665 45
Q ss_pred ccEEEccccccccc-chhhccCCC--------C--CCc----HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch
Q 039402 1322 RLSIIPQDPVMFEG-TVRSNLDPL--------E--EST----DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG 1386 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~g-TIR~NLdp~--------~--~~s----d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G 1386 (1496)
+++++||+|.+|.+ |+++|+... . ..+ ++++.++++++++.+.. .+.++ +.+||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~---~~~LSgG 168 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRSV---NVGFSGG 168 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSBT---TTTCCHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCCc---ccCCCHH
Confidence 69999999999987 899988521 1 122 23567778887764211 12221 1259999
Q ss_pred HHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcc--cCEEEEEeCCeEeEecC
Q 039402 1387 QRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVID--SDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1387 QrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~--~DrIlVL~~G~IvE~g~ 1463 (1496)
||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999998864 47899999999999876 89999999999999999
Q ss_pred hhhHhh
Q 039402 1464 PANLLE 1469 (1496)
Q Consensus 1464 p~~Ll~ 1469 (1496)
|+++..
T Consensus 249 ~~~~~~ 254 (267)
T 2zu0_C 249 FTLVKQ 254 (267)
T ss_dssp TTHHHH
T ss_pred HHHHhh
Confidence 998753
No 72
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-40 Score=378.78 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=181.7
Q ss_pred EEEEeEEeEeCCC--CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQ--MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~--~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|+++|++++|+.. ..++|+|+||+|+ ||++||+|+||||||||+++|.|++ |++|+|.+||.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998765 34 7889
Q ss_pred E-EEcccccccccchhhccCCC---CCCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1324 S-IIPQDPVMFEGTVRSNLDPL---EESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1324 ~-iIpQdp~LF~gTIR~NLdp~---~~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
+ ++||+|.+ ..|+++|+... ....++++.+++++.++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 88999999632 134577888999998886 4432 234579999999999999999
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc-ccC-EEEEEeCCeEeEecChhhHhhc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI-DSD-LVLLLNHGLIEEFDNPANLLEN 1470 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~-~~D-rIlVL~~G~IvE~g~p~~Ll~~ 1470 (1496)
++|++|+|||||++||+.+.+.+.+.|++..+ |||+|+|+++.+. .|| +|++|++|++++.|+|+++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999987644 9999999999986 499 9999999999999999999853
No 73
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-40 Score=390.30 Aligned_cols=206 Identities=23% Similarity=0.348 Sum_probs=174.0
Q ss_pred CccEEEEeeEEEecCCC-CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------
Q 039402 615 ETALDIVDGNFSWDISS-HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------- 682 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------- 682 (1496)
...++++|++++|.... ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999996432 246899999999999999999999999999999999999999999999883
Q ss_pred -----eEEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHH
Q 039402 683 -----KAYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQ 749 (1496)
Q Consensus 683 -----~~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkq 749 (1496)
+|||+|++.++.. ||+|||.|+. ..++ ++..++++.++|.+ ..++...+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-----------GTTCCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHH
Confidence 6999999988754 9999999863 2222 23444555555532 235677899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChH
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYN 826 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 826 (1496)
||+|||||+.+|+++||||||||||+.+...+++. ++.+ . .|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l-L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILEL-LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999764 4443 2 48999999999999865 9999999999999999999
Q ss_pred HHHhcC
Q 039402 827 DLINSG 832 (1496)
Q Consensus 827 ~l~~~~ 832 (1496)
+++...
T Consensus 250 ev~~~p 255 (366)
T 3tui_C 250 EVFSHP 255 (366)
T ss_dssp HHHSSC
T ss_pred HHHhCC
Confidence 998654
No 74
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.8e-40 Score=387.16 Aligned_cols=203 Identities=33% Similarity=0.506 Sum_probs=174.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999995 467999999999999999999999999999999999999999999999873
Q ss_pred -eEEEccCCccCC-CcHHHHhccCCCC---C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH
Q 039402 683 -KAYVAQSPWIQS-GKIEDNILFGKEM---N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 753 (1496)
Q Consensus 683 -~~yv~Q~~~i~~-~ti~eNI~~g~~~---~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L 753 (1496)
+|||+|++.++. .||+|||.|+... . +++.+++++.++|.+ ..+++..+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------LAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------GTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHH
Confidence 599999998875 5999999998542 1 234445555555532 2356778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 754 ARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 754 ARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
||||+.+|+++|||||||+||+.....+.+.+.+.. ..|+|+|+||||++++.. ||+|++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999876655543 358999999999998765 999999999999999999999865
Q ss_pred Cc
Q 039402 832 GT 833 (1496)
Q Consensus 832 ~~ 833 (1496)
..
T Consensus 230 p~ 231 (359)
T 3fvq_A 230 PA 231 (359)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 75
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-39 Score=368.46 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred eEEEccCCccCCC-cHHHHhccCC-C-CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 683 KAYVAQSPWIQSG-KIEDNILFGK-E-MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 683 ~~yv~Q~~~i~~~-ti~eNI~~g~-~-~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
++|++|++.++.. |++||+.++. . .+. ++.+++++.. + |.....++++.+|||||||||+|||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHHHHHHHH
Confidence 7999999998876 9999999864 1 111 1222233322 1 1122346778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||+++|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999887644333336899999999998865 599999999999999999988864
No 76
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-39 Score=370.14 Aligned_cols=201 Identities=31% Similarity=0.388 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred -eEEEccCCccCCC-cHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 -KAYVAQSPWIQSG-KIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 -~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++||+|++.++.. |++||+.++. .... ++.+++++.+++.+ ...+.+.+|||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-----------KAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCChhhCCHHHHHHHH
Confidence 6999999988765 9999998852 2222 23344445444432 235677899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999988876443333458999999999999875 999999999999999999998754
No 77
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.2e-40 Score=372.49 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=175.2
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccE
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
.|+++||+++|+++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999623 4699999999999999999999999999999999999999999998 367899
Q ss_pred EEccccccc-ccchhhccCCCC--------CC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHH
Q 039402 1325 IIPQDPVMF-EGTVRSNLDPLE--------ES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVC 1392 (1496)
Q Consensus 1325 iIpQdp~LF-~gTIR~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~ 1392 (1496)
++||+|.+| ..|+++|+.... .. .++++.++++.+++.+...+ ...+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHHH
Confidence 999999887 569999996421 01 13568889999988765433 24579999999999
Q ss_pred HHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEccCcchhc-ccCEEEEEeCCeEeEecChhhHhh
Q 039402 1393 LGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS--DCTVLTIAHRITSVI-DSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1393 LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~--~~TVI~IAHRl~ti~-~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
|||||+++|+|||||||||+||+.+.+.+.+.|++..+ ++|||+|+|+++.+. .||+|++|++|+ ++.|+|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988753 799999999999985 499999999999 99999999975
Q ss_pred c
Q 039402 1470 N 1470 (1496)
Q Consensus 1470 ~ 1470 (1496)
+
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
No 78
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-39 Score=387.17 Aligned_cols=202 Identities=31% Similarity=0.445 Sum_probs=172.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999995 467999999999999999999999999999999999999999999999984 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .||+|||.|+.. .++ ++.+++++.+++.+ ..+++..+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhHCCHHHHHHHHHHHHH
Confidence 999999875 599999999742 333 23444555554432 23567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+||||++++.. ||+|++|++|+|++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999987655443333 8999999999988754 9999999999999999999998654
No 79
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-39 Score=368.88 Aligned_cols=202 Identities=27% Similarity=0.421 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 589999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ------------eEEEccCCccCCC-cHHHHhccCC----CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 683 ------------KAYVAQSPWIQSG-KIEDNILFGK----EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 683 ------------~~yv~Q~~~i~~~-ti~eNI~~g~----~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
++||+|++.++.. |++||+.++. ..+. ++..++++.+++.+.+ ..++..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 6899999988765 9999998852 2222 2344455555554320 346678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEE
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 820 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 820 (1496)
+|||||||||+|||||+.+|+++|||||||+||+.+...+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988876443333458999999999999865 9999999999999
Q ss_pred EecChHHHHhc
Q 039402 821 QAGKYNDLINS 831 (1496)
Q Consensus 821 ~~G~~~~l~~~ 831 (1496)
+.|+++++.+.
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 80
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.3e-39 Score=368.55 Aligned_cols=197 Identities=23% Similarity=0.339 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999995 357999999999999999999999999999999999999999999999873
Q ss_pred eEEEccCCccCC-CcHHHHhccCCCC----------------C-H---HHHHHHHHHhchhhHHHhccCCCcccccCCCC
Q 039402 683 KAYVAQSPWIQS-GKIEDNILFGKEM----------------N-R---ERYNAVLDACSLKKDLEILSFGDQTVIGERGI 741 (1496)
Q Consensus 683 ~~yv~Q~~~i~~-~ti~eNI~~g~~~----------------~-~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~ 741 (1496)
++||+|++.++. .|++||+.++... + . ++.+++++.+++ ....++++.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----------SHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----------GGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC-----------chhhCCCch
Confidence 699999998775 6999999986321 1 1 122233333332 233467788
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEE
Q 039402 742 NLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKIT 820 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 820 (1496)
+|||||||||+|||||+++|+++|||||||+||+.+...+.+.+.+...+|+|||+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999887644333345899999999999986 49999999999999
Q ss_pred EecChHH
Q 039402 821 QAGKYND 827 (1496)
Q Consensus 821 ~~G~~~~ 827 (1496)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
No 81
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.9e-39 Score=366.25 Aligned_cols=204 Identities=24% Similarity=0.373 Sum_probs=172.7
Q ss_pred cEEEEeeEEEecCCCC--CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------eE
Q 039402 617 ALDIVDGNFSWDISSH--NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KA 684 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------~~ 684 (1496)
.++++|++++|+.++. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 3789999999952111 46999999999999999999999999999999999999999999999983 69
Q ss_pred EEccCC--ccCCCcHHHHhccCCC------CCHHHHHHHHHHhchh--hHHHhccCCCcccccCCCCCCChHHHHHHHHH
Q 039402 685 YVAQSP--WIQSGKIEDNILFGKE------MNRERYNAVLDACSLK--KDLEILSFGDQTVIGERGINLSGGQKQRIQIA 754 (1496)
Q Consensus 685 yv~Q~~--~i~~~ti~eNI~~g~~------~~~~~~~~v~~~~~l~--~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LA 754 (1496)
||+|+| .+++.|++||+.++.. ..+++..++++.+++. +. ..+...+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF-----------KDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH-----------TTCCGGGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc-----------ccCChhhCCHHHHHHHHHH
Confidence 999997 4677899999998742 1245566777777665 32 2355689999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 755 RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 755 RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|||+++|+++||||||++||+.+...+.+.+.+...+|+|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998876443333458999999999999875 999999999999999999888654
No 82
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.2e-39 Score=362.48 Aligned_cols=194 Identities=26% Similarity=0.304 Sum_probs=162.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 489999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|++.++. .|++||+.++.. ... ++..++++.+++. ....++..+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-----------DKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHH
Confidence 799999998875 599999988531 221 2233344443332 223567789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecC
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGK 824 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 824 (1496)
+||||++++|+++||||||++||+.+...+.+.+.....+|+|+|+|||+++.+..||++++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999887644333345899999999998886699999999999999886
No 83
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-39 Score=365.08 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=170.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------e
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------K 683 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------~ 683 (1496)
..++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 4699999999995 357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEccCCccCCC-cHHHHhccCC---CCCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGK---EMNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~---~~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
+|++|++.++.. |++||+.++. .... ++..++++.+++.+. ..+++.+|||||||||+|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999988765 9999998753 1222 234455555555322 34567899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHh
Q 039402 756 ALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 756 Al~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
||+.+|+++|||||||+||+.+...+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999998876443333468999999999999876 99999999999999999988864
No 84
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.5e-39 Score=368.42 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 3689999999995 467999999999999999999999999999999999999999999999984
Q ss_pred eEEEccCCcc-CCCcHHHHhccCCC-----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 683 KAYVAQSPWI-QSGKIEDNILFGKE-----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 683 ~~yv~Q~~~i-~~~ti~eNI~~g~~-----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
++|++|++.+ ++.|++||+.++.. .++++.+++++.+++.+ ...++..+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 5999999877 56799999998743 22344555666555432 1245567899999999999999
Q ss_pred Hcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHH
Q 039402 757 LYQ------DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 757 l~~------~~~illLDep~saLD~~~~~~i~~~~~~~~-~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 827 (1496)
|++ +|+++||||||||||+.+...+++. +..+ .+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~-l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL-LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH-HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999 9999999999999999999988764 4443 33 5799999999999864 99999999999999999999
Q ss_pred HHh
Q 039402 828 LIN 830 (1496)
Q Consensus 828 l~~ 830 (1496)
+..
T Consensus 235 ~~~ 237 (266)
T 4g1u_C 235 VLN 237 (266)
T ss_dssp HCC
T ss_pred HhC
Confidence 864
No 85
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.2e-39 Score=379.27 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=172.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 388999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCC-CcHHHHhccCCCC---C----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEM---N----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~---~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+... . +++.+++++.++|.+ ...++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------LLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHH
Confidence 999998875 4999999997532 1 134455555555532 23466789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++. .||+|++|++|+|++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999998887654433333 899999999999875 59999999999999999999997654
No 86
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5e-39 Score=379.61 Aligned_cols=204 Identities=26% Similarity=0.386 Sum_probs=172.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eE
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KA 684 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~ 684 (1496)
..++++|++++|+ +++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++
T Consensus 13 ~~l~~~~l~~~y~--g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCT--TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred ceEEEEEEEEEEc--CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4699999999993 2357999999999999999999999999999999999999999999999883 69
Q ss_pred EEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH
Q 039402 685 YVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA 756 (1496)
Q Consensus 685 yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA 756 (1496)
||+|++.++. .|++|||.|+.. ... ++.+++++.+++.+ ...++..+|||||||||+||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------YANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 9999998876 599999998632 222 23444555554432 2356678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhcC
Q 039402 757 LYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 757 l~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
|+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+..
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999887654333233 8999999999998765 9999999999999999999997653
No 87
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-38 Score=362.80 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=169.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccC-CC
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-SG 695 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~-~~ 695 (1496)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.+...++|++|+|.++ +.
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 4899999999951 35799999999999999999999999999999999999999999999888899999999887 66
Q ss_pred cHHHHhccCCC--------CCH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 039402 696 KIEDNILFGKE--------MNR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764 (1496)
Q Consensus 696 ti~eNI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1496)
|++||+.++.. ... ++.+++++.+++.+ ...+++.+|||||||||+|||||+.+|+++
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998641 122 23444555554432 234567899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 765 LFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|||||||+||+.+...+.+.+.....+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999887644333334 899999999999985 599999999999 99999988753
No 88
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-38 Score=378.32 Aligned_cols=202 Identities=26% Similarity=0.352 Sum_probs=171.3
Q ss_pred cEEEEeeEEEecCCCCCC--ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISSHNP--TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~--~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+ +++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 378999999995 356 999999999999999999999999999999999999999999999872
Q ss_pred ----eEEEccCCccCCC-cHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 683 ----KAYVAQSPWIQSG-KIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 683 ----~~yv~Q~~~i~~~-ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
++||+|++.++.. |++|||.|+... .. ++.+++++..+|.+ ...++..+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHH
Confidence 6899999988764 999999997532 22 23444555554432 2346678999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|+|||||+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999887654433233 8999999999998754 999999999999999999999
Q ss_pred HhcC
Q 039402 829 INSG 832 (1496)
Q Consensus 829 ~~~~ 832 (1496)
.+..
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7654
No 89
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.3e-39 Score=379.64 Aligned_cols=202 Identities=29% Similarity=0.371 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|. ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 388999999995 357999999999999999999999999999999999999999999999883 699
Q ss_pred EccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+.. ... ++.+++++.+++. ....++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 999998876 499999999732 222 2333444444432 123567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999887654333233 899999999998875 59999999999999999999997653
No 90
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-38 Score=378.41 Aligned_cols=202 Identities=24% Similarity=0.335 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEE
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAY 685 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~y 685 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 699
Q ss_pred EccCCccCC-CcHHHHhccCCCC---CH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 686 VAQSPWIQS-GKIEDNILFGKEM---NR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 686 v~Q~~~i~~-~ti~eNI~~g~~~---~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
|+|++.++. .|++|||.|+... .+ ++.+++++.++|.+ ...++..+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHH
Confidence 999998875 5999999998542 22 23444455544432 23567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 758 YQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 758 ~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999887654433333 899999999998875 59999999999999999999997654
No 91
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-38 Score=359.41 Aligned_cols=196 Identities=27% Similarity=0.387 Sum_probs=164.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|.++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 67899999994 1 59999999999 999999999999999999999999999999999883 6899
Q ss_pred ccCCccCCC-cHHHHhccCCCCC-----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 687 AQSPWIQSG-KIEDNILFGKEMN-----RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~~~-----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
+|++.++.. |++||+.++.... +++.+++++..++. ....++..+||||||||++||||++++
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-----------HLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-----------TTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999988765 9999999975431 12223333333322 223566789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHH-h-CCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecChHHHHhc
Q 039402 761 SDIYLFDDPFSAVDAHTGSHLFQEVLLGL-L-SSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDLINS 831 (1496)
Q Consensus 761 ~~illLDep~saLD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 831 (1496)
|+++||||||++||+.+.+.+.+. +..+ . .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999888764 4444 3 38999999999998754 999999999999999999988654
No 92
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-38 Score=376.57 Aligned_cols=200 Identities=29% Similarity=0.418 Sum_probs=170.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEE
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYV 686 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv 686 (1496)
++++|++++|+ ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 68899999995 35 999999999999999999999999999999999999999999999984 6999
Q ss_pred ccCCccCCC-cHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 687 AQSPWIQSG-KIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 687 ~Q~~~i~~~-ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+|++.++.. |++|||.|+.. ...++.+++++.++|.+ ...++..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-----------LLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-----------TTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998865 99999998632 12245555666555532 234667899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHhcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 832 (1496)
+++|||||||+||+.....+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++.+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999988765443323 4899999999998875 49999999999999999999998653
No 93
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-39 Score=357.10 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=168.1
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..|+++||+++|+. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|+++
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 36999999999964 6999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEccccccccc-chhhccCCC----C-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPL----E-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~----~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|+||+|.+|.+ |+++|+... + ...++++.++++.+++.+. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 999998531 1 2236778888988877543 233567999999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+++|++|+|||||++||+.+...+.+.|++.. +++|||+++|+++.+..++..+++..|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 99999999999999999999999999998764 36899999999999988444445666766
No 94
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.3e-39 Score=368.05 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=167.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|.
T Consensus 20 ~~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4699999999995 357999999999999999999999999999999999999999999999872
Q ss_pred --eEEEccCCcc-CCC--cHHHHhccCCC--------CCH---HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH
Q 039402 683 --KAYVAQSPWI-QSG--KIEDNILFGKE--------MNR---ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG 746 (1496)
Q Consensus 683 --~~yv~Q~~~i-~~~--ti~eNI~~g~~--------~~~---~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG 746 (1496)
++|++|++.+ +.. |++||+.++.. ..+ ++..++++.+++. ...+++..+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-----------AKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHH
Confidence 6999999864 444 99999998741 122 2233344444432 2235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccCcCcccc-CCEEEEEeCCeEEEec
Q 039402 747 QKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTV--IYVTHQVEFLPA-ADLILVMKDGKITQAG 823 (1496)
Q Consensus 747 QkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tv--ilvtH~~~~l~~-~d~i~~l~~G~i~~~G 823 (1496)
|||||+|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999998876443322348999 999999999764 9999999999999999
Q ss_pred ChHHHHh
Q 039402 824 KYNDLIN 830 (1496)
Q Consensus 824 ~~~~l~~ 830 (1496)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9988764
No 95
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.4e-38 Score=377.32 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=170.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------- 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 478999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---eEEEccCCccCC-CcHHHHhccCCC---CCH----HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 683 ---KAYVAQSPWIQS-GKIEDNILFGKE---MNR----ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~-~ti~eNI~~g~~---~~~----~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
++||+|++.++. .|++|||.|+.. ... ++.+++++.++|.+ ...++..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCCcccCCHHHHHHH
Confidence 689999998875 599999999732 222 23444555554432 23466789999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHH
Q 039402 752 QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-SKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 752 ~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+|||||+.+|+++|||||||+||+.....+.+.+.+...+ |+|+|+|||+++++. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654333333 899999999999875 49999999999999999999987
Q ss_pred hcC
Q 039402 830 NSG 832 (1496)
Q Consensus 830 ~~~ 832 (1496)
...
T Consensus 229 ~~p 231 (372)
T 1g29_1 229 DKP 231 (372)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
No 96
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.2e-38 Score=355.27 Aligned_cols=195 Identities=23% Similarity=0.347 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------e
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------K 683 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~ 683 (1496)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|.++|+ |+|.++|. +
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4788888875 5899999999999999999999999999999999999999 99999984 6
Q ss_pred EEEccCCccCCC-cHHHHhccCCCC--CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 039402 684 AYVAQSPWIQSG-KIEDNILFGKEM--NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 760 (1496)
Q Consensus 684 ~yv~Q~~~i~~~-ti~eNI~~g~~~--~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~ 760 (1496)
+|++|++.++.. |++||+.++... ++++..++++..++.+. .++++.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999988754 999999987522 35566667776666432 2456789999999999999999999
Q ss_pred CC-------EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCCEEEEEeCCeEEEecChHHHHh
Q 039402 761 SD-------IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AADLILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 761 ~~-------illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
|+ ++||||||++||+.+...+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 99999999999999999887644333345899999999999985 599999999999999999988854
No 97
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-37 Score=355.94 Aligned_cols=197 Identities=22% Similarity=0.339 Sum_probs=167.7
Q ss_pred EEEEeeEEEecCC-CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC----------eeE-E
Q 039402 618 LDIVDGNFSWDIS-SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----------TKA-Y 685 (1496)
Q Consensus 618 i~~~~~~~~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----------~~~-y 685 (1496)
++++|++++|+.. ..+++|+|+||+++ ||+++|+||||||||||+++|+|.+ |++|+|.++| .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 6889999999521 01579999999999 9999999999999999999999999 9999999998 478 9
Q ss_pred EccCCccCCCcHHHHhccCC---CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 686 VAQSPWIQSGKIEDNILFGK---EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 686 v~Q~~~i~~~ti~eNI~~g~---~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
++|+|.+ +.|++||+.++. ..++++.+++++..++.. ...++++.+||||||||++|||||+.+|+
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999998 889999998853 234555666666655531 23456788999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccc-cCC-EEEEEeCCeEEEecChHHHHh
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLP-AAD-LILVMKDGKITQAGKYNDLIN 830 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d-~i~~l~~G~i~~~G~~~~l~~ 830 (1496)
++||||||++||+.+.+.+.+ .+..+. . |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~-~L~~~~-~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISR-YIKEYG-K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHH-HHHHSC-S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEEECCccccCHHHHHHHHH-HHHHhc-C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999988875 444443 3 9999999999875 599 999999999999999988864
No 98
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.9e-37 Score=351.08 Aligned_cols=196 Identities=23% Similarity=0.274 Sum_probs=157.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC--CCCCccEEEEcCe------------
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE--VPKISGTLKLCGT------------ 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~i~~~g~------------ 682 (1496)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|. ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 478999999995 35799999999999999999999999999999999998 8899999999884
Q ss_pred --eEEEccCCccCCC-cHHHHhccCCC------CC----HHHHHHHHHHhchhhHHHhccCCCcccccCCCCC-CChHHH
Q 039402 683 --KAYVAQSPWIQSG-KIEDNILFGKE------MN----RERYNAVLDACSLKKDLEILSFGDQTVIGERGIN-LSGGQK 748 (1496)
Q Consensus 683 --~~yv~Q~~~i~~~-ti~eNI~~g~~------~~----~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~-LSGGQk 748 (1496)
++|++|+|.++.. |++||+.++.. .. .++..++++..++..+ ...+...+ ||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES----------YLSRYLNEGFSGGEK 149 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG----------GGGSBTTCC----HH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCCCHHHH
Confidence 4799999988765 99999987521 11 1223334444443211 12334456 999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc--CCEEEEEeCCeEEEecCh
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA--ADLILVMKDGKITQAGKY 825 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~G~~ 825 (1496)
|||+|||||+++|+++|||||||+||+.+...+.+ ++..+ .+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999998875 45544 358999999999999875 599999999999999998
Q ss_pred H
Q 039402 826 N 826 (1496)
Q Consensus 826 ~ 826 (1496)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
No 99
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-37 Score=353.04 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=161.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC--CCCCccEEEEcCe-----------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE--VPKISGTLKLCGT----------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~--~~~~~G~i~~~g~----------- 682 (1496)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|. ++|++|+|.++|.
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3599999999994 35799999999999999999999999999999999999 4789999999883
Q ss_pred ---eEEEccCCccCCC-cHHHHhccCC----------CCCHH----HHHHHHHHhchhhHHHhccCCCcccccCCCC-CC
Q 039402 683 ---KAYVAQSPWIQSG-KIEDNILFGK----------EMNRE----RYNAVLDACSLKKDLEILSFGDQTVIGERGI-NL 743 (1496)
Q Consensus 683 ---~~yv~Q~~~i~~~-ti~eNI~~g~----------~~~~~----~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~-~L 743 (1496)
++|++|+|.++.. |++||+.++. ..+.+ +.+++++..++.. ....+... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE----------DLLTRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT----------TTTTSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh----------hHhcCCcccCC
Confidence 6899999988765 8999987532 11221 2223333333211 11233344 59
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCcccc--CCEEEEEeCCeEE
Q 039402 744 SGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA--ADLILVMKDGKIT 820 (1496)
Q Consensus 744 SGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~ 820 (1496)
||||||||+|||||+.+|+++|||||||+||+.+.+.+.+ ++..+ .+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999988875 45544 348999999999998865 8999999999999
Q ss_pred EecChHHHH
Q 039402 821 QAGKYNDLI 829 (1496)
Q Consensus 821 ~~G~~~~l~ 829 (1496)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999987753
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-37 Score=338.74 Aligned_cols=187 Identities=22% Similarity=0.347 Sum_probs=154.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe--------eEEEc
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT--------KAYVA 687 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~--------~~yv~ 687 (1496)
..++++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 4689999999995 3 7999999999999999999999999999999999999999999999983 69999
Q ss_pred cCCccCCC-cHHHHhccCC-----CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 688 QSPWIQSG-KIEDNILFGK-----EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 688 Q~~~i~~~-ti~eNI~~g~-----~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
|+|.++.. |++||+.++. ..++++..++++.+++ ... ++++.+||||||||++||||++.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99988765 9999998752 1224445555554443 223 5678899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcccc-CCEEEEEeCCeE
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 819 (1496)
+++||||||++||+.+...+.+.+.+...+|+|+|++||+++.+.. ||+++ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999998876443322348999999999999877 66665 555665
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=3.7e-36 Score=348.08 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhhcCCCCCCCCccCCCCCCCCCC-cceEEEEeEEeEeCCCCCccceeeeEEeeCC
Q 039402 1195 TLLATLIWFACDLENKIISVERIFQYTCIPSEPPLAIEESRPNDSWPS-HGKIDLLDLQVRYAPQMPLVLQGISCTFPGG 1273 (1496)
Q Consensus 1195 ~~l~~~i~~~~~le~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~-~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~G 1273 (1496)
..+..+...+..+.....+.+|+.++++.+++... ++..|+. .+.|+++||+++|. .++|+|+||+|++|
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~G 126 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKK 126 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCC
Confidence 44566667777788889999999999876544221 1123543 35699999999996 46999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh-ccCCCCCCcHHHH
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS-NLDPLEESTDEQI 1352 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~-NLdp~~~~sd~eI 1352 (1496)
|++|||||||||||||+++|.|++ +|+|. +++||+|.+|.+|+++ ||....+.++ .+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------SFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------CGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------EEecCccccccccHHHHhhccCccccH-HH
Confidence 999999999999999999999999 89983 5679999999999998 9876544444 44
Q ss_pred HHHHHHcCCcHHHHh-ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCC
Q 039402 1353 WEALDKCQLGDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSD 1431 (1496)
Q Consensus 1353 ~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~ 1431 (1496)
++ ++.. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|++
T Consensus 185 ~~---------~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 185 WR---------YFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp HH---------HHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred HH---------HHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 44 4444 678887 78999999999 999999999999 99999999998862
Q ss_pred cEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHHH
Q 039402 1432 CTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAEY 1482 (1496)
Q Consensus 1432 ~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~~ 1482 (1496)
++||++++..||+| ||++|+|++.|+|++| ++.|++++...
T Consensus 235 -----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 -----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp -----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred -----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 39999999999999 9999999999999999 47788877543
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.97 E-value=5.8e-33 Score=349.16 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=121.1
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+.++++..|+. ...+|.+ .|++|+.++|+|++|||||||++.+++...|. |+ +.+.+.
T Consensus 259 ~~~~l~~g~~~-ld~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~ 316 (525)
T 1tf7_A 259 SNVRVSSGVVR-LDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFA 316 (525)
T ss_dssp CCCEECCSCHH-HHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEE
T ss_pred ccceeecChHH-HHHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEE
Confidence 44566665532 2234544 99999999999999999999999999998875 53 114455
Q ss_pred cccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1327 PQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
+||+. .+++.|..-++ .+-++ +...++ ..........||+||+|++++||++..+|++||+
T Consensus 317 ~ee~~---~~l~~~~~~~g-~~~~~----~~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llil 377 (525)
T 1tf7_A 317 YEESR---AQLLRNAYSWG-MDFEE----MERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAI 377 (525)
T ss_dssp SSSCH---HHHHHHHHTTS-CCHHH----HHHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EeCCH---HHHHHHHHHcC-CCHHH----HHhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 66652 23444432111 11111 112222 2222233457999999999999999999999999
Q ss_pred EcCCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEEccCc----------chhcc-cCEEEEEeCCe
Q 039402 1407 DEATASVDTA-----TDNLIQQTLRQHF-SDCTVLTIAHRI----------TSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1407 DEaTsslD~~-----Td~~Iq~~I~~~f-~~~TVI~IAHRl----------~ti~~-~DrIlVL~~G~ 1457 (1496)
| ||+++|.. ..+.+.+.++... .++|||+|+|.. ..+.. ||+|++|++|+
T Consensus 378 D-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 378 D-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp E-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred c-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999998 8888888877643 479999999998 66654 99999999997
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.8e-31 Score=335.85 Aligned_cols=199 Identities=21% Similarity=0.262 Sum_probs=164.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
..++++|+++.|+ ...|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.. ++
T Consensus 356 ~~l~~~~l~~~~~----~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRLVKDYG----SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCEEEECS----SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeceEEEec----ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 4688999999884 247999999999999999999999999999999999999999999988889999999865 56
Q ss_pred CcHHHHhccC-CC-C-CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFG-KE-M-NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g-~~-~-~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|++||+.+. .. + +.++..++++..++. ....+...+|||||||||+|||||.++|++|||||||+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999998753 11 1 122233334433332 22356678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLIN 830 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~ 830 (1496)
+||+.+...+.+ +++.+ ..|+|+|+||||++++.. ||+|++|++ |++...|+++++..
T Consensus 501 ~LD~~~~~~l~~-~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999988875 45444 358999999999999875 999999986 88888999988754
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.4e-31 Score=333.33 Aligned_cols=199 Identities=22% Similarity=0.250 Sum_probs=162.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
..++++|+++.|. ...|+++||++++||+++|+||||||||||+++|+|.++|++|+|.+...++|++|++.. ++
T Consensus 286 ~~l~~~~l~~~~~----~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRLVKDYG----SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCEEEEET----TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeEEEEEC----CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 4688999999884 246999999999999999999999999999999999999999999988889999999876 56
Q ss_pred CcHHHHhccC-C-C-CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFG-K-E-MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g-~-~-~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|+.||+... . . .+.++..++++..+ ......+...+|||||||||+|||||.++|++|||||||+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999988643 1 0 11222222222222 2223466778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHh
Q 039402 772 AVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLIN 830 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~ 830 (1496)
+||+.+...+.+ +++.+. .|+|||+||||++++.. ||+|++|++ |++...|+++++..
T Consensus 431 ~LD~~~~~~i~~-~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 431 YLDVEQRLAVSR-AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999998875 444442 48999999999999875 999999986 78888999988753
No 105
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.8e-30 Score=324.45 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=160.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-eeEEEccCCcc-C
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-TKAYVAQSPWI-Q 693 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-~~~yv~Q~~~i-~ 693 (1496)
..++++++++.|. ...|++.||++++||+++|+||||||||||+++|+|.++|++|+|.+++ .++|++|++.. +
T Consensus 268 ~~l~~~~l~~~~~----~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLG----DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEET----TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEEC----CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 4678889998885 2568889999999999999999999999999999999999999999887 47999999764 4
Q ss_pred CCcHHHHhccCCC----CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC
Q 039402 694 SGKIEDNILFGKE----MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP 769 (1496)
Q Consensus 694 ~~ti~eNI~~g~~----~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep 769 (1496)
..|++||+.+... ...+..+++++..++. ....+...+|||||||||+|||||.++|++||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6799999976421 1122233333333332 234567789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHH
Q 039402 770 FSAVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLI 829 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~ 829 (1496)
|++||+.+...+.+. ++.+ ..|+|+|+||||++++.. ||+|++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~-l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKA-IKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999888754 4443 258999999999999876 999999986 5666677765543
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.9e-29 Score=325.28 Aligned_cols=196 Identities=20% Similarity=0.277 Sum_probs=164.8
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
..+...|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999964 359999999999999999999999999999999995 654 6655421 1247
Q ss_pred EEEcccc-ccc-ccchhhccCC-CCCCcHHHHHHHHHHcCCc-HHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc
Q 039402 1324 SIIPQDP-VMF-EGTVRSNLDP-LEESTDEQIWEALDKCQLG-DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1324 ~iIpQdp-~LF-~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~-~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1399 (1496)
++++|++ .++ .-|+++|+.. .... ++++.++|+..++. +...+.+ .+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 8999986 444 4599999853 1112 77899999999995 3333322 4689999999999999999
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc-cCEEEEEeCCeEe-EecChhhHhh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID-SDLVLLLNHGLIE-EFDNPANLLE 1469 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv-E~g~p~~Ll~ 1469 (1496)
+|+||||||||++||+.+.+.+.+.|++ .++|||+|+|+++.+.+ ||+|++|++|+++ ..|+++++++
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999998 68999999999999976 9999999999997 4799999875
No 107
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-30 Score=324.36 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=159.6
Q ss_pred EeeEEEecCCCCCCceeeeeEEEeCC-----cEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCcc-CC
Q 039402 621 VDGNFSWDISSHNPTLKDINLKVFHG-----MRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI-QS 694 (1496)
Q Consensus 621 ~~~~~~~~~~~~~~~L~~i~l~i~~G-----~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i-~~ 694 (1496)
++..++|+ +...+++|+||++.+| |+++|+||||||||||+++|+|+++|++|+..-.-.++|++|++.. +.
T Consensus 350 ~~~~~~y~--~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYP--SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEEC--CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEec--CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 45567774 2245789999999999 7899999999999999999999999999985434468999999754 56
Q ss_pred CcHHHHhccCC---CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 695 GKIEDNILFGK---EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 695 ~ti~eNI~~g~---~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
.|++||+.... ..+.+...++++..++.+ .......+|||||||||+|||||.++|++|||||||+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 79999986432 234444455555554432 2356678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--hCCcEEEEEccCcCcccc-CCEEEEEeC--CeEEEecChHHHHhc
Q 039402 772 AVDAHTGSHLFQEVLLGL--LSSKTVIYVTHQVEFLPA-ADLILVMKD--GKITQAGKYNDLINS 831 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~G~~~~l~~~ 831 (1496)
+||+.+...+.+. ++.+ ..|+|+|+||||++++.. ||+|++|++ |+++..|++++++..
T Consensus 497 gLD~~~~~~i~~l-l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKV-IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHH-HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999998888754 4443 248999999999999875 999999996 999999999998764
No 108
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.4e-29 Score=327.40 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=140.2
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHH---------------------HHHhcccCCC-------ccEEEECCeeC
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLI---------------------QTLFRIVEPA-------AGQILIDGIDI 1311 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl---------------------~~L~rl~ep~-------~G~I~IDG~dI 1311 (1496)
..+|+||||+|++||++||+||||||||||+ +.+.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8888898888 56677777665
Q ss_pred CCCChHHHhcccEEEccccccc--------------------ccchhhccCCCCCC--c--HHHH-----------HHHH
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMF--------------------EGTVRSNLDPLEES--T--DEQI-----------WEAL 1356 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF--------------------~gTIR~NLdp~~~~--s--d~eI-----------~~aL 1356 (1496)
... .|+.+++|+|.+.++ .-|+++|+..+... . +.+. .+.|
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 345666666665432 34899998753211 1 1111 1123
Q ss_pred HHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcE
Q 039402 1357 DKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASVDTATDNLIQQTLRQHF-SDCT 1433 (1496)
Q Consensus 1357 ~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~T 1433 (1496)
+.+++.+. -+| .....||||||||++|||||+.+|+ |||||||||+||+.+...|.+.|++.. .++|
T Consensus 187 ~~~gL~~~------~~~----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~t 256 (670)
T 3ux8_A 187 QNVGLDYL------TLS----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 256 (670)
T ss_dssp HHTTCTTC------CTT----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCE
T ss_pred HHcCCchh------hhc----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 33333211 122 2345799999999999999999988 999999999999999999999998753 4799
Q ss_pred EEEEccCcchhcccCEEEEE------eCCeEeEecChhhHhhcCCcHHHH
Q 039402 1434 VLTIAHRITSVIDSDLVLLL------NHGLIEEFDNPANLLENKSSSFSQ 1477 (1496)
Q Consensus 1434 VI~IAHRl~ti~~~DrIlVL------~~G~IvE~g~p~~Ll~~~~s~F~~ 1477 (1496)
||+|+|+++.+..||+|++| ++|++++.|+|+++.+++......
T Consensus 257 vi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~ 306 (670)
T 3ux8_A 257 LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ 306 (670)
T ss_dssp EEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHH
T ss_pred EEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHH
Confidence 99999999988889999999 899999999999999876554443
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.95 E-value=7.3e-32 Score=312.14 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=176.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCCCCCCCccEEEEeeEEEecCCCC
Q 039402 553 LESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDLVEKQPSGSSETALDIVDGNFSWDISSH 632 (1496)
Q Consensus 553 L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 632 (1496)
.+-+.+.+++.+.+. ..|+..+...+..+.++.++.+||.+++..+...... ..+.......++++|++|+|+
T Consensus 40 ~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 40 GSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--EGSWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--SCCTHHHHHHHHHTTCCHHHH----
T ss_pred CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCcccccCCeEEEEEEEEEcC----
Confidence 344566677766555 4799999999999999999999999999753211110 000000112478889999985
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHH-HhccCCCCCHHH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIED-NILFGKEMNRER 711 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~e-NI~~g~~~~~~~ 711 (1496)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|+++.+|++| ||.++...++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~~-- 182 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSHFWLASLADTRAALVDDATH-- 182 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEECH--
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccccccccHHHHhhccCccccH--
Confidence 46999999999999999999999999999999999998 8988 46789999999999998 9999754432
Q ss_pred HHHHHHHhchhhHHHh-ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 039402 712 YNAVLDACSLKKDLEI-LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~-l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~ 790 (1496)
++.+.++. +|.|.+ |.+|||||||| |||++++|+||| ||+||++++..+..
T Consensus 183 --------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------- 234 (305)
T 2v9p_A 183 --------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------- 234 (305)
T ss_dssp --------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------
T ss_pred --------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------
Confidence 12334554 666654 78999999999 999999999999 99999999776631
Q ss_pred CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 791 SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 791 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+||+++.+..||+| +|++|++++.|+++++
T Consensus 235 -------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 -------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred -------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999999899999 9999999999999998
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=9.8e-28 Score=293.58 Aligned_cols=200 Identities=17% Similarity=0.187 Sum_probs=153.1
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCccE
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE--------------------------------------PAAGQ 1303 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e--------------------------------------p~~G~ 1303 (1496)
+++++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999966653 45789
Q ss_pred EEECCeeCCCCChHHHhcc-cEEEcccccccccchhhc---cCCCCCCcH------------------------------
Q 039402 1304 ILIDGIDISLIGLHDLRSR-LSIIPQDPVMFEGTVRSN---LDPLEESTD------------------------------ 1349 (1496)
Q Consensus 1304 I~IDG~dI~~i~l~~LR~~-i~iIpQdp~LF~gTIR~N---Ldp~~~~sd------------------------------ 1349 (1496)
+.+||.+++...+.+++.. ++++||++.++-++..++ +|......+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987778888777 799999998876655433 333221100
Q ss_pred ----------------------------------HHHHHHHHHcCCcHHHHh---------ccCCccc---ccccCCCC-
Q 039402 1350 ----------------------------------EQIWEALDKCQLGDEVRK---------KEGKLDS---KVTENGEN- 1382 (1496)
Q Consensus 1350 ----------------------------------~eI~~aL~~~~L~~~i~~---------lp~gLdt---~v~e~G~n- 1382 (1496)
+++.+.++..++.+.-.. .+.|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 112222222222110000 0112222 34444444
Q ss_pred -------CCchHHHHHHHHHHHccCC--CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE
Q 039402 1383 -------WSMGQRQLVCLGRVLLKRS--KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1383 -------LS~GQrQll~LARALLr~~--~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
||||||||++|||+|+.+| +||||||||++||+.+.+.|.+.|++..+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987889999999999888889999999
Q ss_pred ----eCCeEeEec
Q 039402 1454 ----NHGLIEEFD 1462 (1496)
Q Consensus 1454 ----~~G~IvE~g 1462 (1496)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999998653
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.2e-30 Score=312.90 Aligned_cols=192 Identities=10% Similarity=0.034 Sum_probs=155.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-E-EEECCeeCCCCChHHHhc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-Q-ILIDGIDISLIGLHDLRS 1321 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~-I~IDG~dI~~i~l~~LR~ 1321 (1496)
+.++++||+++|. ++||++++||+++|+||||||||||+++|.|++.|++| + |++|| +.|+
T Consensus 117 ~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~ 179 (460)
T 2npi_A 117 TMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQ 179 (460)
T ss_dssp THHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTS
T ss_pred chhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccC
Confidence 4578888888884 79999999999999999999999999999999999999 9 99998 2478
Q ss_pred ccEEEcccccccc----cchhhccCCCCC----CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1322 RLSIIPQDPVMFE----GTVRSNLDPLEE----STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~----gTIR~NLdp~~~----~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
.++++||++.+|. .|+++|+-+... ..++.+.++++.++ ++.... ..+||||||||++|
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHHHH
T ss_pred CeeeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHHHH
Confidence 8999999996553 489999822111 01122223333333 333322 56899999999999
Q ss_pred HHH--HccCCCE----EEEEc-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcc------hhc-ccCE-----EEEEe
Q 039402 1394 GRV--LLKRSKI----LMLDE-ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRIT------SVI-DSDL-----VLLLN 1454 (1496)
Q Consensus 1394 ARA--LLr~~~I----LiLDE-aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~------ti~-~~Dr-----IlVL~ 1454 (1496)
||| |+++|+| ||||| ||+++|+. .+.|.+.+++. +.|+|+|+|+.+ .+. -||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 77788888764 789999999988 444 4999 99999
Q ss_pred -CCeEeEecChhhHhh
Q 039402 1455 -HGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1455 -~G~IvE~g~p~~Ll~ 1469 (1496)
+|+|+ .|+|+++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 899998853
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=5.1e-26 Score=296.41 Aligned_cols=102 Identities=24% Similarity=0.438 Sum_probs=89.5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 735 VIGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 735 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
.+|+.+.+|||||||||+|||||.++| ++|||||||+|||++..+.+.+.+.+...+|+|||+|||+++.+..||+|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 368899999999999999999999876 69999999999999999988764433334699999999999999889999
Q ss_pred EEE------eCCeEEEecChHHHHhcCcchH
Q 039402 812 LVM------KDGKITQAGKYNDLINSGTDFM 836 (1496)
Q Consensus 812 ~~l------~~G~i~~~G~~~~l~~~~~~~~ 836 (1496)
++| ++|+|+++|+++++.+....|.
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred EEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 999 8999999999999987665443
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=1.9e-25 Score=288.74 Aligned_cols=97 Identities=25% Similarity=0.497 Sum_probs=86.2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 736 IGERGINLSGGQKQRIQIARALYQD---SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 736 ig~~g~~LSGGQkqRv~LARAl~~~---~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
.++...+|||||||||+|||+|.++ |++|||||||++||+.....+.+.+.....+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5788899999999999999999996 7999999999999999999887644333356999999999999997799999
Q ss_pred EE------eCCeEEEecChHHHHhcC
Q 039402 813 VM------KDGKITQAGKYNDLINSG 832 (1496)
Q Consensus 813 ~l------~~G~i~~~G~~~~l~~~~ 832 (1496)
+| ++|+|+..|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987654
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=2.4e-25 Score=287.23 Aligned_cols=101 Identities=23% Similarity=0.463 Sum_probs=87.9
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 735 VIGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 735 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
..++...+|||||||||+|||||.++| ++|||||||++||+.....+.+.+.....+|+|||+|||+++++..||+|
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrI 917 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 457888999999999999999999875 99999999999999999988765433334699999999999998789999
Q ss_pred EEE------eCCeEEEecChHHHHhcCcch
Q 039402 812 LVM------KDGKITQAGKYNDLINSGTDF 835 (1496)
Q Consensus 812 ~~l------~~G~i~~~G~~~~l~~~~~~~ 835 (1496)
++| ++|+|+..|+++++.+....+
T Consensus 918 ivL~p~gG~~~G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 918 IDLGPEGGDRGGQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp EEECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred EEEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence 999 789999999999998654433
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=1.2e-24 Score=281.89 Aligned_cols=101 Identities=23% Similarity=0.435 Sum_probs=87.7
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 735 VIGERGINLSGGQKQRIQIARALYQDS---DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 735 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
..++...+|||||||||+|||||.++| ++|||||||++||+.....+.+.+.....+|+|||+|||+++++..||+|
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrI 935 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 457888999999999999999999875 99999999999999999988764433334699999999999998789999
Q ss_pred EEE------eCCeEEEecChHHHHhcCcch
Q 039402 812 LVM------KDGKITQAGKYNDLINSGTDF 835 (1496)
Q Consensus 812 ~~l------~~G~i~~~G~~~~l~~~~~~~ 835 (1496)
++| ++|+|+..|+++++.+....+
T Consensus 936 ivL~p~gg~~~G~Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 936 IDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965 (993)
T ss_dssp EEEESSSTTSCSEEEEEECHHHHHHCTTCH
T ss_pred EEECCCcCCCCCEEEEecCHHHHHhCCHHH
Confidence 999 689999999999998754433
No 116
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.7e-24 Score=255.55 Aligned_cols=201 Identities=17% Similarity=0.254 Sum_probs=143.8
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----------------------------------------------
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV----------------------------------------------- 1297 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~----------------------------------------------- 1297 (1496)
++++++.+| .++|+|+||||||||+.+|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998432
Q ss_pred ---CCCccEEEECCeeCCCCChHHHhcccEEEccccccc-ccchhhccCCCCC----CcH------------HHHHHHHH
Q 039402 1298 ---EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-EGTVRSNLDPLEE----STD------------EQIWEALD 1357 (1496)
Q Consensus 1298 ---ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF-~gTIR~NLdp~~~----~sd------------~eI~~aL~ 1357 (1496)
.+.+|++.+||.+++.-.+.+++..+++.||+..++ .|++.+|+...++ +-| +++.+.++
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344679999999986656777777899999998765 8899988753111 000 11222221
Q ss_pred Hc------------CCcH-HHHhccCCcccccc------cCCCCCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCC
Q 039402 1358 KC------------QLGD-EVRKKEGKLDSKVT------ENGENWSMGQRQLVCLGRVLL----KRSKILMLDEATASVD 1414 (1496)
Q Consensus 1358 ~~------------~L~~-~i~~lp~gLdt~v~------e~G~nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD 1414 (1496)
.. .+.+ ....++.|++..++ ....+||+|||||++|||||. ++|+||||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 11 0100 01123345555432 234689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEE--EEEeCCeEe-EecChhh
Q 039402 1415 TATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLV--LLLNHGLIE-EFDNPAN 1466 (1496)
Q Consensus 1415 ~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrI--lVL~~G~Iv-E~g~p~~ 1466 (1496)
+.+.+.+.+.|++..+++|||+|+|+.+.+..||++ ++|++|+.. ...+.++
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999886788999999998877789987 889888543 3344444
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.4e-27 Score=286.76 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=136.8
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-E-EEEcC----eeEEEccCCccC----CCcHHHHhccCCC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-T-LKLCG----TKAYVAQSPWIQ----SGKIEDNILFGKE 706 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~-i~~~g----~~~yv~Q~~~i~----~~ti~eNI~~g~~ 706 (1496)
.++||++++|++++|+||||||||||+++|+|.++|++| + |.++| .++|+||++.++ ..|++||+ |+..
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 478899999999999999999999999999999999999 9 99987 478999998432 35899999 7654
Q ss_pred CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----EEEec-CCCCCCHHHHH
Q 039402 707 MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA--LYQDSDI----YLFDD-PFSAVDAHTGS 779 (1496)
Q Consensus 707 ~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA--l~~~~~i----llLDe-p~saLD~~~~~ 779 (1496)
..... . ......+-++.+ |...... ..+||||||||++|||| |..+|++ +|||| ||++||+. .
T Consensus 208 ~~~~~-~---~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~- 277 (460)
T 2npi_A 208 LTSGA-T---LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L- 277 (460)
T ss_dssp CBSSC-C---SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C-
T ss_pred cccCc-c---hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H-
Confidence 21000 0 000011111111 2222222 67999999999999999 9999999 99999 99999998 3
Q ss_pred HHHHHHHHHHhCCcEEEEEccCcC------ccc-cCCE-----EEEEe-CCeEEEecChHHHH
Q 039402 780 HLFQEVLLGLLSSKTVIYVTHQVE------FLP-AADL-----ILVMK-DGKITQAGKYNDLI 829 (1496)
Q Consensus 780 ~i~~~~~~~~~~~~tvilvtH~~~------~l~-~~d~-----i~~l~-~G~i~~~G~~~~l~ 829 (1496)
..+.++++. .++|+|+|||+.+ ++. .||+ |++|+ +|+++ .|+.+++.
T Consensus 278 ~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 278 AELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 333444443 3789999999988 544 4999 99999 99999 99988774
No 118
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.6e-24 Score=263.15 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEE----eC
Q 039402 743 LSGGQKQRIQIARALYQDS--DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVM----KD 816 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l----~~ 816 (1496)
||||||||++|||+|+++| ++|||||||++||+.+...+.+ .+..+.+|+|||+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 8999999999999999999 9999999999999999999875 455555789999999999988889999999 99
Q ss_pred CeEEEe
Q 039402 817 GKITQA 822 (1496)
Q Consensus 817 G~i~~~ 822 (1496)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998754
No 119
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=5.9e-26 Score=250.29 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=102.9
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
.+|+|| ++||++||+|+||||||||+++|.|+ +|++|+|. +.++. .+....|++++++||+| ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 33443 12335688999999998 677
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHH
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNL 1420 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~ 1420 (1496)
+.++.. ..++.+....-.+.+.+ .+.. | + |||||++|||||+.+|+||||||||++ +...
T Consensus 79 l~~~~~----~~~~~~~~~~~~~~~~~-------~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~ 138 (208)
T 3b85_A 79 IDPYLR----PLHDALRDMVEPEVIPK-------LMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQ 138 (208)
T ss_dssp -CTTTH----HHHHHHTTTSCTTHHHH-------HHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHH
T ss_pred HHHHHH----HHHHHHHHhccHHHHHH-------HHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHH
Confidence 743311 01111111000011111 1111 1 1 999999999999999999999999999 8888
Q ss_pred HHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeE
Q 039402 1421 IQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLI 1458 (1496)
Q Consensus 1421 Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~I 1458 (1496)
+.+.|++.-+++||| |+|+++.+.. +...++|..
T Consensus 139 l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~ 172 (208)
T 3b85_A 139 MKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR 172 (208)
T ss_dssp HHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence 999998874578999 9999886543 445566643
No 120
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.87 E-value=2.1e-25 Score=248.56 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=125.4
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh-HHHhcccEEEcccccccc-----
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-HDLRSRLSIIPQDPVMFE----- 1334 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i~iIpQdp~LF~----- 1334 (1496)
.-|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+... ...|..++|+||+|.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765533 346788999999987664
Q ss_pred ------cchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH-----HHHHccCCCE
Q 039402 1335 ------GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL-----GRVLLKRSKI 1403 (1496)
Q Consensus 1335 ------gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L-----ARALLr~~~I 1403 (1496)
++++.|.- ..+++++.++++..... .+. .++|||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~~~---g~~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANNFY---GTLKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTEEE---EEEHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccccC---CCcHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 34444421 12356677777654321 111 5789999999999 8999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1404 LMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1404 LiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
++|||||+++|.++++.|++.+++..++.| ++| +..||+|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988777777 788 678999999865
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=4.6e-22 Score=238.31 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCCCCCchHHHHHHHHHHHc------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEE
Q 039402 1379 NGENWSMGQRQLVCLGRVLL------KRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVL 1451 (1496)
Q Consensus 1379 ~G~nLS~GQrQll~LARALL------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIl 1451 (1496)
...+||||||||++|||||. ++|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998864 4799999999999988899999
Q ss_pred EEeCCeEeE
Q 039402 1452 LLNHGLIEE 1460 (1496)
Q Consensus 1452 VL~~G~IvE 1460 (1496)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999976
No 122
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=2.1e-24 Score=254.69 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=121.7
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
|+|++| | +++++++|+++++|+.++|+|+||||||||+++|.|+++|++|.|.|+|.+. +.+..+|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 777777 7 3589999999999999999999999999999999999999999999999763 33333455566553
Q ss_pred ccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE
Q 039402 1328 QDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD 1407 (1496)
Q Consensus 1328 Qdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD 1407 (1496)
| +||+||++|||||+++|++|+||
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 79999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1408 EATASVDTATDNLIQQTLRQHFSDC-TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1408 EaTsslD~~Td~~Iq~~I~~~f~~~-TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
|||+ .+ +++.|+....++ |+|+++|+.++...||||++|++|+....+-|.+
T Consensus 248 E~~~---~e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 248 ELRS---SE----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp CCCS---TH----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred CCCh---HH----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 9998 22 445565555554 8999999999888899999999986433343433
No 123
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=1.6e-22 Score=242.32 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=74.1
Q ss_pred cCCCCCCChHHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCE
Q 039402 737 GERGINLSGGQKQRIQIARALY------QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADL 810 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LARAl~------~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~ 810 (1496)
++...+||||||||++|||||. .+|++|||||||++||+.+...+++.+......|+|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567799999999999999999 7999999999999999999998876433333458999999999998777999
Q ss_pred EEEEeCCeEEE
Q 039402 811 ILVMKDGKITQ 821 (1496)
Q Consensus 811 i~~l~~G~i~~ 821 (1496)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=8.5e-22 Score=232.52 Aligned_cols=182 Identities=23% Similarity=0.261 Sum_probs=122.5
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC----------------------------------------------
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV---------------------------------------------- 670 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~---------------------------------------------- 670 (1496)
+++++++.+| +++|+||||||||||+.+|...+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999998432
Q ss_pred ----CCCccEEEEcCee-------------EEEccCCcc-CCCcHHHHhccCCCC-----C--------HHHHHHHHHHh
Q 039402 671 ----PKISGTLKLCGTK-------------AYVAQSPWI-QSGKIEDNILFGKEM-----N--------RERYNAVLDAC 719 (1496)
Q Consensus 671 ----~~~~G~i~~~g~~-------------~yv~Q~~~i-~~~ti~eNI~~g~~~-----~--------~~~~~~v~~~~ 719 (1496)
.+.+|.+.++|.. ++.+|+..+ +.+++.+|+...... + ...|+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2234677788743 344555443 356788877653210 0 11233333321
Q ss_pred c---------------hhh-HHHhccCCCccc------ccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCC
Q 039402 720 S---------------LKK-DLEILSFGDQTV------IGERGINLSGGQKQRIQIARALY----QDSDIYLFDDPFSAV 773 (1496)
Q Consensus 720 ~---------------l~~-d~~~l~~g~~t~------ig~~g~~LSGGQkqRv~LARAl~----~~~~illLDep~saL 773 (1496)
. +.. ..+.++.|.++. ....+.+||||||||++||||+. .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1 000 011233333332 22346799999999999999996 689999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE--EEEeCCeEE
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI--LVMKDGKIT 820 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i--~~l~~G~i~ 820 (1496)
|+.....+++ .+....+++|+|++||+.+.+..||++ ++|++|...
T Consensus 255 D~~~~~~l~~-~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 255 DDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CHHHHHHHHH-HHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 9999888875 455555688999999998877789987 888888654
No 125
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=4.7e-23 Score=220.69 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=99.8
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC--eeEEEccCCccCCCcHHHHhccCCCCCHHHHHHH
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG--TKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAV 715 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g--~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v 715 (1496)
|+||++++||+++|+||||||||||++++.+.... +++ ..++++|++.-.. .+...++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~~------------~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQT------------VTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCGG------------GHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccchh------------hHHHHHHHH
Confidence 68999999999999999999999999987643221 221 1255666542110 011111111
Q ss_pred HHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------H
Q 039402 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG----------------S 779 (1496)
Q Consensus 716 ~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~----------------~ 779 (1496)
... ....+..|..+.+.. ....|||||||++||||+..+|++++|||||++||+.++ .
T Consensus 63 ~~~-----~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~ 136 (171)
T 4gp7_A 63 HYI-----VSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQ 136 (171)
T ss_dssp HHH-----HHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHH
T ss_pred HHH-----HHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHH
Confidence 111 111223344444433 345699999999999999999999999999999999943 5
Q ss_pred HHHHHHHHHH-hCCcEEEEEccCcCccccCCEE
Q 039402 780 HLFQEVLLGL-LSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 780 ~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i 811 (1496)
.+.+ .+..+ .+|.|+|+|||+++.+..++++
T Consensus 137 ~l~~-~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 137 QMKK-SIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHH-HSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred Hhhh-hhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 5543 33332 3489999999999888766554
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=8.7e-23 Score=219.72 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
++||+|+||||||||+++|.|++. |.++|.+.........++++++++|++ |.++|+-. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~-------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--S-------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--E--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--h--------
Confidence 799999999999999999999985 667887764443225678999999997 34445410 0
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH-----HccCCCEEEEEc--CCCCCCHHHHHHHHHHHHH
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV-----LLKRSKILMLDE--ATASVDTATDNLIQQTLRQ 1427 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA-----LLr~~~ILiLDE--aTsslD~~Td~~Iq~~I~~ 1427 (1496)
.+. + -+..++..+.+||+|||||++|||| ++.+|++|+||| ||+++|+.+.+.+.+.+++
T Consensus 62 ----~~~-------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 62 ----KFF-------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp ----TTC-------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ----hcC-------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000 0 0123555667899999999999996 999999999999 9999999999999999987
Q ss_pred hcCCcEEEEEcc---Ccchhcc-cCEEEEEeCCeEeEec
Q 039402 1428 HFSDCTVLTIAH---RITSVID-SDLVLLLNHGLIEEFD 1462 (1496)
Q Consensus 1428 ~f~~~TVI~IAH---Rl~ti~~-~DrIlVL~~G~IvE~g 1462 (1496)
.++|+|+++| +.+.+.. ||| .+|+|.|..
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~~ 161 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIELT 161 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEECC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEec
Confidence 4677888886 5556654 776 668887754
No 127
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=8.8e-24 Score=232.93 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=90.2
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE----------cCeeEEEccCCccCCCcHHHHh-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL----------CGTKAYVAQSPWIQSGKIEDNI- 701 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~----------~g~~~yv~Q~~~i~~~ti~eNI- 701 (1496)
+.+|+|+ ++||+++|+||||||||||+++|+|. +|++|+|.. ...++|++|++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 999999843 12468888877 6777
Q ss_pred ccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 039402 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHL 781 (1496)
Q Consensus 702 ~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i 781 (1496)
.++.+ .+........ .+.++. .+.. .| |||||++|||||+.+|+++||||||++ +...+
T Consensus 81 ~~~~~----~~~~~~~~~~-~~~~~~-------~l~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l 139 (208)
T 3b85_A 81 PYLRP----LHDALRDMVE-PEVIPK-------LMEA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM 139 (208)
T ss_dssp TTTHH----HHHHHTTTSC-TTHHHH-------HHHT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH
T ss_pred HHHHH----HHHHHHHhcc-HHHHHH-------HHHh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH
Confidence 44321 0110000000 000100 0111 12 999999999999999999999999999 55555
Q ss_pred HHHHHHHHhCCcEEEEEccCcCcccc
Q 039402 782 FQEVLLGLLSSKTVIYVTHQVEFLPA 807 (1496)
Q Consensus 782 ~~~~~~~~~~~~tvilvtH~~~~l~~ 807 (1496)
. +++..+.+|+|+| |||+++.+..
T Consensus 140 ~-~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 140 K-MFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp H-HHHTTBCTTCEEE-EEEC------
T ss_pred H-HHHHHhcCCCEEE-EECCHHHHhC
Confidence 4 4454444588999 9999876543
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=2.9e-22 Score=214.46 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=106.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccc--ccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPV--MFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~--LF~gTIR~NLd 1342 (1496)
||||++++||.++|+|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2211 2234445 67788762 33333332221
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHH----
Q 039402 1343 PLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATD---- 1418 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td---- 1418 (1496)
...+ ..+..|+...+.. -...|+|||||++||||+..+|++|+|||||+++|+.++
T Consensus 64 --------~~~~-----------~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 64 --------YIVS-----------KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------HHHH-----------HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------HHHH-----------HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 0111 1122344443333 334599999999999999999999999999999999954
Q ss_pred ------------HHHHHHHHHhc-CCcEEEEEccCcchhcccCEE
Q 039402 1419 ------------NLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLV 1450 (1496)
Q Consensus 1419 ------------~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrI 1450 (1496)
+.+.+.|++.. ++.|+|+|+|+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765432 388999999999999888775
No 129
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=1.1e-22 Score=244.81 Aligned_cols=173 Identities=17% Similarity=0.111 Sum_probs=136.6
Q ss_pred ccceeeeEEeeCCc--------------------EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHh
Q 039402 1261 LVLQGISCTFPGGE--------------------KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Ge--------------------kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.+|++|||++++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998764 2
Q ss_pred cccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCch--HHHHHHHHHHHc
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMG--QRQLVCLGRVLL 1398 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~G--QrQll~LARALL 1398 (1496)
.++++|++....-|+++|+.... .++.+.+.+++.++.+. +..+ .+|+| ||||+.|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHHH
Confidence 27899998655679999986421 23456778888876432 2222 17888 999999999999
Q ss_pred c----------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc---------C-CcEEEEEccCcch--hcc-cCEEE-EEe
Q 039402 1399 K----------RSKILMLDEATASVDTATDNLIQQTLRQHF---------S-DCTVLTIAHRITS--VID-SDLVL-LLN 1454 (1496)
Q Consensus 1399 r----------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f---------~-~~TVI~IAHRl~t--i~~-~DrIl-VL~ 1454 (1496)
+ +|++++|||||+++|+.+.+.+.+.|++.. . ..++++-||.++. +.. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999999888887752 1 2567788998876 555 77774 444
Q ss_pred CCe
Q 039402 1455 HGL 1457 (1496)
Q Consensus 1455 ~G~ 1457 (1496)
+|+
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 443
No 130
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=6.9e-23 Score=249.85 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=156.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe---eCCCC-----C
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI---DISLI-----G 1315 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i-----~ 1315 (1496)
+.++++|+++.|..+ ..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|++|.|.++|. ++..+ +
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468999999999643 4599999 999999999999999999999999999999999999999998 55443 2
Q ss_pred hHHHhcccEEEccc--ccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHH
Q 039402 1316 LHDLRSRLSIIPQD--PVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCL 1393 (1496)
Q Consensus 1316 l~~LR~~i~iIpQd--p~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~L 1393 (1496)
...+++.+++++|+ |....-|+.+|+... .|.+. ..+ .+ +. .+-+...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~~-~~-v~--------~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DRG-QH-VL--------LIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TTT-CE-EE--------EEEECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hCC-CC-HH--------HHHHhHHHHHHHH-HHHHH
Confidence 35688899999995 334455888887421 12211 100 00 00 1113356799999 99999
Q ss_pred HHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEEccCcchhcccCEEEEEeCCeEeEecC
Q 039402 1394 GRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS-----DC-----TVLTIAHRITSVIDSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1394 ARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-----~~-----TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~ 1463 (1496)
| +++|++ |+++|+.+...+++.+++..+ ++ ||++++|+++ ...||++++|++|+|++.++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 899998 999999999999999988755 54 9999999999 66799999999999999999
Q ss_pred hhhHhh
Q 039402 1464 PANLLE 1469 (1496)
Q Consensus 1464 p~~Ll~ 1469 (1496)
|.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 988864
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.80 E-value=4.6e-21 Score=206.24 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=98.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC-CccEEE--E-----cCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK-ISGTLK--L-----CGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~--~-----~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
+++|+||||||||||+++|+|++.. ..|... . ...++|++|++ +..+|++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh--------------
Confidence 6899999999999999999999852 233211 1 12468888876 3334442 10
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhCC
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA-----LYQDSDIYLFDD--PFSAVDAHTGSHLFQEVLLGLLSS 792 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARA-----l~~~~~illLDe--p~saLD~~~~~~i~~~~~~~~~~~ 792 (1496)
+ ....+..+++++.+||||||||++|||| ++.+|++++||| ||+++|+...+.+.+ .+.. .+
T Consensus 62 -~-------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~-~l~~--~~ 130 (178)
T 1ye8_A 62 -K-------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ-IMHD--PN 130 (178)
T ss_dssp -T-------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH-HHTC--TT
T ss_pred -h-------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH-HHhc--CC
Confidence 0 0001135678889999999999999996 999999999999 999999998777654 3332 46
Q ss_pred cEEEEEcc---CcCcccc-CCEEEEEeCCeEEE
Q 039402 793 KTVIYVTH---QVEFLPA-ADLILVMKDGKITQ 821 (1496)
Q Consensus 793 ~tvilvtH---~~~~l~~-~d~i~~l~~G~i~~ 821 (1496)
.|+|++|| +.+++.. +|+ .+|++.+
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 77999996 5566654 665 4566654
No 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.80 E-value=3.2e-22 Score=240.92 Aligned_cols=157 Identities=22% Similarity=0.204 Sum_probs=124.7
Q ss_pred CCceeeeeEEEeCCc--------------------EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee----EEEcc
Q 039402 633 NPTLKDINLKVFHGM--------------------RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----AYVAQ 688 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~--------------------~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~----~yv~Q 688 (1496)
+.+|+||||++++|+ .++|+||||||||||+++|+|.++|++|+|.++|.. +|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999999998843 79999
Q ss_pred CCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChH--HHHHHHHHHHHcc-------
Q 039402 689 SPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGG--QKQRIQIARALYQ------- 759 (1496)
Q Consensus 689 ~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGG--QkqRv~LARAl~~------- 759 (1496)
++...+.|++||+.++.+ +.+.++.++..++.+. + . ... |||| ||||++||||+.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~-------~-~----~~~-lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY-------D-F----FII-ISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC-------S-E----EEE-EESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc-------C-C----eEE-eCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 986667799999988753 2334556666554321 1 1 122 9999 9999999999999
Q ss_pred ---CCCEEEEecCCCCCCHHHHHHHHHHHHHHH-----hC----CcEEEEEccCcCc
Q 039402 760 ---DSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-----LS----SKTVIYVTHQVEF 804 (1496)
Q Consensus 760 ---~~~illLDep~saLD~~~~~~i~~~~~~~~-----~~----~~tvilvtH~~~~ 804 (1496)
+||+++|||||++||+....++.+.+.... .. .+++++.||.++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 999999999999999999888765443321 11 3567888998764
No 133
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=1e-21 Score=218.73 Aligned_cols=154 Identities=12% Similarity=0.182 Sum_probs=104.9
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc-------------CeeEEEccCCccCC------
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC-------------GTKAYVAQSPWIQS------ 694 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~-------------g~~~yv~Q~~~i~~------ 694 (1496)
..|+||||++++|++++|+||||||||||+++|+|++ | |+|.++ ..++|++|++..+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999998 5 988871 13578999875543
Q ss_pred -----CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEE
Q 039402 695 -----GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI-----ARALYQDSDIY 764 (1496)
Q Consensus 695 -----~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~L-----ARAl~~~~~il 764 (1496)
+++.+| .+|.+ .+..+++++.. ....++ .+||||||||+++ ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~~--~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL--KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEEE--HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCCc--HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 233334 23322 33344444432 111222 6899999999999 89999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeC
Q 039402 765 LFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 765 lLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
+|||||+++|..+...+.+. +....+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~-l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKR-MEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHH-HHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHH-HHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988877654 344444556 677 467999988764
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.77 E-value=8.9e-21 Score=217.50 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~ 1353 (1496)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.++++||++.++.. ||.+|+........++.|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456889999999988866 999999754333222223
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~T 1433 (1496)
+.+.+....++-..++ ..||+|||||+++|||++. +++|||||+++|+.. ..+.+.+++ .++
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCc
Confidence 3332222222222222 2589999999999999875 999999999999875 344444444 389
Q ss_pred EEEEccCcchhcc
Q 039402 1434 VLTIAHRITSVID 1446 (1496)
Q Consensus 1434 VI~IAHRl~ti~~ 1446 (1496)
||.|.|+..++..
T Consensus 143 vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 143 IIPVIAKADTMTL 155 (270)
T ss_dssp EEEEETTGGGSCH
T ss_pred EEEEEeccccCCH
Confidence 9999999887643
No 135
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=7.8e-21 Score=221.23 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=125.8
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccc-ccc-c
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPV-MFE-G 1335 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~-LF~-g 1335 (1496)
+++||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.+++++||++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678999999999999999999999999999999999999999999987764 2334 457999999987 664 4
Q ss_pred chhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCC
Q 039402 1336 TVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATAS 1412 (1496)
Q Consensus 1336 TIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTss 1412 (1496)
|+++|+.... ...|. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 8999985210 00010 11222222211 11112 2377 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEcc---------Ccchhcc-cCEEEEEeCCeEe
Q 039402 1413 VDTATDNLIQQTLRQHFSDCTVLTIAH---------RITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1413 lD~~Td~~Iq~~I~~~f~~~TVI~IAH---------Rl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
+|+.+.. +.+++. .+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 233 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998653 223222 3789999999 3333333 6799999999764
No 136
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=7.6e-19 Score=208.48 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCCchHHHHHHHHHHHc---------cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEE
Q 039402 1382 NWSMGQRQLVCLGRVLL---------KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLL 1452 (1496)
Q Consensus 1382 nLS~GQrQll~LARALL---------r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlV 1452 (1496)
.+|+||||+++|||+|. .+|+||+||||||+||+...+.+.+.|++.. .|+|+++| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 89999999 454 8999999
Q ss_pred EeCCeEeEecChhhHh
Q 039402 1453 LNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1453 L~~G~IvE~g~p~~Ll 1468 (1496)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999874
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=5.5e-21 Score=223.51 Aligned_cols=174 Identities=16% Similarity=0.196 Sum_probs=130.8
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEE-----------------------eeCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCT-----------------------FPGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~-----------------------I~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
.+.|+++||++.|. ++++++++. +++|+.+||+|+||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45799999999995 477887775 899999999999999999999999999999
Q ss_pred CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC--C----CcHHHHHHHHHHcCCcHHHHhccCCc-
Q 039402 1300 AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE--E----STDEQIWEALDKCQLGDEVRKKEGKL- 1372 (1496)
Q Consensus 1300 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~----~sd~eI~~aL~~~~L~~~i~~lp~gL- 1372 (1496)
.+|. .++++||||+.++..|+++|+.... . +..+.+.+.|+..+ .|.
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~~~ 170 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SGSD 170 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TTCS
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CCcc
Confidence 8663 5799999999999999999986432 1 22344555555443 222
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcc--cCEE
Q 039402 1373 DSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVID--SDLV 1450 (1496)
Q Consensus 1373 dt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~--~DrI 1450 (1496)
+..+ ..||+||+||+++|||++.+|+|||||||++..|... ..+++.+ | .+|.|.|..+.... .+|.
T Consensus 171 ~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 171 YACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp CEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHH
T ss_pred cCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHH
Confidence 2333 4699999999999999999999999999999998522 1233333 3 34667776665432 5565
Q ss_pred EEEeCCe
Q 039402 1451 LLLNHGL 1457 (1496)
Q Consensus 1451 lVL~~G~ 1457 (1496)
+.+.+|+
T Consensus 240 ~~~rd~~ 246 (312)
T 3aez_A 240 LAMRTTA 246 (312)
T ss_dssp HHHTTTG
T ss_pred HHHHhcc
Confidence 5555554
No 138
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.76 E-value=5.7e-21 Score=203.71 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCeeCCCCC---hHHHh-cccE----EEcccccccccchhhccC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGIDISLIG---LHDLR-SRLS----IIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~---l~~LR-~~i~----iIpQdp~LF~gTIR~NLd 1342 (1496)
++++|||+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988886 77888 4788 899999988 332
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHh-ccCCcccccccCCCCCCchHHHHHHHHHHHccCCCE
Q 039402 1343 PLEESTDEQIWEALDKCQLGDEVRK-KEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKI 1403 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L~~~i~~-lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1403 (1496)
.++++ .+++.+++.. +| |+|+.++|+ ||+|||||++||||++++|+|
T Consensus 77 -----~~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -----VSEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -----CCHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred -----CChhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 11222 7899999999 99 999999995 999999999999999999987
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=2.1e-20 Score=202.84 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=132.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHH
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQI 1352 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI 1352 (1496)
||+++|+|+||||||||++.|.|+++ ++| |.+||.++.++ ..+++++++++|+. .|+ +.|+..+.-..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~---- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEP---- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccC----
Confidence 79999999999999999999999999 999 99999998654 45799999999996 554 56664321100
Q ss_pred HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH-HHHH---HHccCCCEEEEEc--CCCCCCHHHHHHHHHHHH
Q 039402 1353 WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV-CLGR---VLLKRSKILMLDE--ATASVDTATDNLIQQTLR 1426 (1496)
Q Consensus 1353 ~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll-~LAR---ALLr~~~ILiLDE--aTsslD~~Td~~Iq~~I~ 1426 (1496)
. +...+.++++.+.++|+|||+++ +++| |++++|+|||||| ||...|..+-+.|.+.++
T Consensus 69 ---------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 69 ---------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ---------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ---------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 0 11233478888889999999998 5566 6899999999999 898899999888888887
Q ss_pred HhcCCcEEE----EEccCcchhcccCEEEEEeCCeEeEecChhhHhhcCCcHHHHHHHH
Q 039402 1427 QHFSDCTVL----TIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLENKSSSFSQLVAE 1481 (1496)
Q Consensus 1427 ~~f~~~TVI----~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~~~~s~F~~l~~~ 1481 (1496)
+ ..|+| +|+||.+ ..-+|+|..+++|+|.+... +|++..+.+++++
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~~ 183 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVTC 183 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHHH
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHHH
Confidence 4 23444 4459886 55688999999999998643 2344566666553
No 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.75 E-value=1.8e-21 Score=233.50 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=147.4
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHhcccEEEcc-----ccccc
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLRSRLSIIPQ-----DPVMF 1333 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR~~i~iIpQ-----dp~LF 1333 (1496)
|++|++++ +++|+.++|+|+|||||||++++|.|+++|+ +|+|.++|.++. + .+|..+++||| +|..|
T Consensus 125 ~~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~ 198 (372)
T 2ewv_A 125 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSF 198 (372)
T ss_dssp CSSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCS
T ss_pred CHHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHH
Confidence 45788876 8999999999999999999999999999998 899988776664 2 36788999999 89999
Q ss_pred ccchhhccCCCCCC-------cHHHHHHHHHHcCCcHH----------------H-------------HhccCCcccccc
Q 039402 1334 EGTVRSNLDPLEES-------TDEQIWEALDKCQLGDE----------------V-------------RKKEGKLDSKVT 1377 (1496)
Q Consensus 1334 ~gTIR~NLdp~~~~-------sd~eI~~aL~~~~L~~~----------------i-------------~~lp~gLdt~v~ 1377 (1496)
+++|+.||...++. +++.++.+++.++.... + ..+++++++.|+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 99999999643333 56678888887754211 1 124678999999
Q ss_pred cCCCCCCchHHHHHHHHHHHccCCCE--EEEEcCCCCCCHH----H-----HHHHHHHHHHhcCCcEEEEEccCcch
Q 039402 1378 ENGENWSMGQRQLVCLGRVLLKRSKI--LMLDEATASVDTA----T-----DNLIQQTLRQHFSDCTVLTIAHRITS 1443 (1496)
Q Consensus 1378 e~G~nLS~GQrQll~LARALLr~~~I--LiLDEaTsslD~~----T-----d~~Iq~~I~~~f~~~TVI~IAHRl~t 1443 (1496)
+++...|+| ||+++||+++.+|+| +|+||+|+++|.. + +..+|+.++...++.|.+.+|||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 988889999 889999999999999 9999999999965 3 45689999888899999999999974
No 141
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=8.3e-21 Score=209.64 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=110.4
Q ss_pred CCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC-hHHHhcccEEEccccccccc
Q 039402 1257 PQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG-LHDLRSRLSIIPQDPVMFEG 1335 (1496)
Q Consensus 1257 ~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~iIpQdp~LF~g 1335 (1496)
++..++++| .+|++||.+||+|+||||||||+++|.|+++ .|.+++ ++.... ....|..++++||++.+|..
T Consensus 6 ~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~ 78 (207)
T 1znw_A 6 PDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQ 78 (207)
T ss_dssp ---------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHH
Confidence 344568999 7999999999999999999999999999985 355554 222221 12346789999999988865
Q ss_pred -chhhccCCC----C-----CCcHHHHHHHHHHc----------CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1336 -TVRSNLDPL----E-----ESTDEQIWEALDKC----------QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1336 -TIR~NLdp~----~-----~~sd~eI~~aL~~~----------~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
|+++|+.+. + ..+.+++.+.++.. ++.+.....| ..||
T Consensus 79 ~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS----------- 136 (207)
T 1znw_A 79 LIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT----------- 136 (207)
T ss_dssp HHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------
T ss_pred HHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------
Confidence 677776422 1 12344454444332 2222222222 2234
Q ss_pred HHccCCCEEEEEcCCCCC----CHHHHHHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEe
Q 039402 1396 VLLKRSKILMLDEATASV----DTATDNLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLN 1454 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTssl----D~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~ 1454 (1496)
||+.+|++++|||||+++ |+.+.+.+++.+++.. .++|+|+|+|+++.+.. ||+|++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 899999999999999998 6778888888887754 37899999999999876 99999984
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=6.4e-20 Score=217.23 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=126.1
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccc-ccc-cc
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPV-MFE-GT 1336 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~-LF~-gT 1336 (1496)
.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.++++++|++. ++. .|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 468889999999999999999999999999999999999999999987653 2333 567999999987 554 48
Q ss_pred hhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCC
Q 039402 1337 VRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASV 1413 (1496)
Q Consensus 1337 IR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTssl 1413 (1496)
+++|+.... ...|. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|||| ||+++
T Consensus 229 v~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 998875210 00010 11222222111 11111 2377 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcc---------Ccchhcc-cCEEEEEeCCeEe
Q 039402 1414 DTATDNLIQQTLRQHFSDCTVLTIAH---------RITSVID-SDLVLLLNHGLIE 1459 (1496)
Q Consensus 1414 D~~Td~~Iq~~I~~~f~~~TVI~IAH---------Rl~ti~~-~DrIlVL~~G~Iv 1459 (1496)
|+.+.. +.+++. .+.|+|++|| .++.+.. .+.|..+..|+.+
T Consensus 291 D~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 291 NMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 998653 222222 3789999999 3344433 6799999999754
No 143
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.74 E-value=6.3e-18 Score=200.63 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 742 NLSGGQKQRIQIARALY---------QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 742 ~LSGGQkqRv~LARAl~---------~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
.||||||||++|||+|. .+|+|+|||||||+||+.....+++. +... +.|+|++|| .+. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~-l~~~--~qt~i~~th-~~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASV--PQAIVTGTE-LAP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH-HHHS--SEEEEEESS-CCT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH-HHhc--CcEEEEEEe-ccc--cCCEEE
Confidence 69999999999999999 89999999999999999999888764 4433 279999999 454 899999
Q ss_pred EEeCCeEEEecChHHH
Q 039402 813 VMKDGKITQAGKYNDL 828 (1496)
Q Consensus 813 ~l~~G~i~~~G~~~~l 828 (1496)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999998765
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.73 E-value=5.5e-19 Score=201.64 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=105.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHhcccE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLRSRLS 1324 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR~~i~ 1324 (1496)
++++|+++ +++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..++
T Consensus 6 ~~l~~l~~------~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGL------PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSC------CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCC------HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 34556654 25999999 9999999999999999999999999999998 999999998864331 22233
Q ss_pred EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEE
Q 039402 1325 IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKIL 1404 (1496)
Q Consensus 1325 iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1404 (1496)
+++|+ +-|++ ..+| +++|||||..+|+++
T Consensus 74 ~v~q~---------------------------------------~~gl~------~~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 74 IVNQR---------------------------------------EVGED------TKSF------ADALRAALREDPDVI 102 (261)
T ss_dssp EEEEE---------------------------------------EBTTT------BSCH------HHHHHHHHHHCCSEE
T ss_pred eeeHH---------------------------------------HhCCC------HHHH------HHHHHHHHhhCCCEE
Confidence 33331 11222 1222 799999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEe
Q 039402 1405 MLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLN 1454 (1496)
Q Consensus 1405 iLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~ 1454 (1496)
++|||| |.++... .++....+.||++++|..+....|||+++|.
T Consensus 103 llDEp~---D~~~~~~---~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 103 FVGEMR---DLETVET---ALRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp EESCCC---SHHHHHH---HHHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred EeCCCC---CHHHHHH---HHHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 999999 9888543 3444446899999999988666688765543
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.72 E-value=9.5e-21 Score=207.69 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=125.3
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhcccEEEcccccccccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1336 (1496)
+++|++++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999886 7999999999
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHH-HHccCCCEEEEEcCCCCCCH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGR-VLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR-ALLr~~~ILiLDEaTsslD~ 1415 (1496)
+++|+- + .++++++++++.....-+ .-.++|+++.... ++ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~~--g-~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNLY--G-TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEEE--E-EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCccC--C-CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 999982 2 378899999986432111 1123455543211 12 567 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeC
Q 039402 1416 ATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
+|++.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999876554 46788 55 88999999875
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=2.8e-19 Score=210.96 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=102.8
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
+++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|..-+..+ ..++++.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~-------~~~~~i~~----------- 221 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK-------HHKNYTQL----------- 221 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS-------SCSSEEEE-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc-------cchhEEEE-----------
Confidence 789999999999999999999999999999999999999999999885311100 00111100
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCC-c
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSS-K 793 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~-~ 793 (1496)
++ | |||+||++|||||..+||+++||||++. + +. +.+..+..| .
T Consensus 222 -------------~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~-~~l~~~~~g~~ 266 (330)
T 2pt7_A 222 -------------FF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---E----AY-DFYNVLCSGHK 266 (330)
T ss_dssp -------------EC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HH-HHHHHHHTTCC
T ss_pred -------------Ee-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HH-HHHHHHhcCCC
Confidence 00 1 8999999999999999999999999982 2 22 234444455 4
Q ss_pred EEEEEccCcCccccCCEEEEEeCCe
Q 039402 794 TVIYVTHQVEFLPAADLILVMKDGK 818 (1496)
Q Consensus 794 tvilvtH~~~~l~~~d~i~~l~~G~ 818 (1496)
|+|++||+.+....+|++++|.+|.
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEEcccHHHHHhhhheehhcCC
Confidence 8999999999667799999998875
No 147
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.72 E-value=4e-19 Score=210.48 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=148.5
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC-------CCh
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL-------IGL 1316 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------i~l 1316 (1496)
..++.++++..|..+ ..+|+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+..+ ++.
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358899999999743 4599999 9999999999999999999999999999999999999999976221 122
Q ss_pred HHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccc-cccCCCCCCchHHHHHHHHH
Q 039402 1317 HDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSK-VTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1317 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~-v~e~G~nLS~GQrQll~LAR 1395 (1496)
..+++.+.+++|.+ ....+.+..++..+.+.+.... .|.|.. +-+...+||+|| |++++|
T Consensus 122 ~~~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 22344455555432 1123445555555555554333 232211 124456899999 999999
Q ss_pred HHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEccCcchhcccCEEEEEeCCeEeEecChhhH
Q 039402 1396 VLLKRSKILMLDEATASVDTATDNLIQQTLRQHF---SDC-----TVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANL 1467 (1496)
Q Consensus 1396 ALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f---~~~-----TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~L 1467 (1496)
+.+|++ |+++|+.....+.+.+++.. .++ ||++++|+++ -.-||++++|.+|+|+..++++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688888 99999999999999998865 267 9999999998 444999999999999999998886
Q ss_pred h
Q 039402 1468 L 1468 (1496)
Q Consensus 1468 l 1468 (1496)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
No 148
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.72 E-value=3.3e-20 Score=216.94 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=111.4
Q ss_pred CccEEEEeeEEEecCCCCCCceeeeeEE-----------------------EeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 615 ETALDIVDGNFSWDISSHNPTLKDINLK-----------------------VFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 615 ~~~i~~~~~~~~~~~~~~~~~L~~i~l~-----------------------i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+..|+++++++.|. |+++++++. +++|++++|+||||||||||+++|.|.++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34688899999884 567777764 89999999999999999999999999999
Q ss_pred CCccEEEEcCeeEEEccCCccCCCcHHHHhccCC----C--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCCh
Q 039402 672 KISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGK----E--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSG 745 (1496)
Q Consensus 672 ~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~----~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSG 745 (1496)
|..|. ..++|++|++.++..|++||+.+.. + .+.++..+.++ .+..|.. .....+|||
T Consensus 116 ~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~---------~l~~~~~---~~~~~~lS~ 179 (312)
T 3aez_A 116 RWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT---------SVKSGSD---YACAPVYSH 179 (312)
T ss_dssp TSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH---------HHHTTCS---CEEEEEEET
T ss_pred ccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH---------HhCCCcc---cCCcccCCh
Confidence 98774 4689999999988789999997532 1 23334333333 3332322 123468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 746 GQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 746 GQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
|||||+++|||+..+|+|+|||||++.+|+
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 999999999999999999999999999986
No 149
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.4e-19 Score=220.78 Aligned_cols=181 Identities=15% Similarity=0.068 Sum_probs=140.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT------------- 682 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~------------- 682 (1496)
..++++++++.|.. +..+|+++ |++.+||+++|+||||||||||+++|+|..+|++|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35777888888852 45799999 999999999999999999999999999999999999999875
Q ss_pred --------eEEEccC--CccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHH
Q 039402 683 --------KAYVAQS--PWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 752 (1496)
Q Consensus 683 --------~~yv~Q~--~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 752 (1496)
++|++|+ +...+.|+.+|+.+.. +|.. .. .++... +=+...+||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~--~~~v~~--------~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DR--GQHVLL--------IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TT--TCEEEE--------EEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hC--CCCHHH--------HHHhHHHHHHHH-HHHH
Confidence 4899995 3344568899987742 1211 00 011111 112356899999 9999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC-----Cc-----EEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 753 IARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS-----SK-----TVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 753 LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~-----~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
|| ..+|++ |+|||+.+...+.+ ++..+.+ |+ ||+++|||++ .+.||++++|.+|+|+.+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HH---hCCCcc------cccCCHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 99 788888 99999999888754 5544433 54 9999999999 666999999999999999
Q ss_pred cChHHHH
Q 039402 823 GKYNDLI 829 (1496)
Q Consensus 823 G~~~~l~ 829 (1496)
|++.++.
T Consensus 337 ~~~~~~~ 343 (438)
T 2dpy_A 337 RRLAEAG 343 (438)
T ss_dssp HHHHHTT
T ss_pred CCHHHcc
Confidence 9876653
No 150
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.71 E-value=6.7e-18 Score=211.82 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=71.0
Q ss_pred CCC-CchHHHHHHHHHHHccCC--CEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCC
Q 039402 1381 ENW-SMGQRQLVCLGRVLLKRS--KILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456 (1496)
Q Consensus 1381 ~nL-S~GQrQll~LARALLr~~--~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G 1456 (1496)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999877789999999999988889999999655
No 151
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=5e-19 Score=202.97 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=88.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe----------eEEEccCCccCCC-cHHHHhccCCCCCHHHHHHHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT----------KAYVAQSPWIQSG-KIEDNILFGKEMNRERYNAVL 716 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~----------~~yv~Q~~~i~~~-ti~eNI~~g~~~~~~~~~~v~ 716 (1496)
.++|+||||||||||+++|+|...|++|+|.++|. ++|++|++.++.. |+.||+.||...+.+...+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 48999999999999999999999999999988763 6999999987654 999999998754321111111
Q ss_pred HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 039402 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVI 796 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvi 796 (1496)
......+..+. ...+||||||||+++|||+.. +|+||||+++||+... .+ ++.+.+..++|
T Consensus 84 ~~~~~~~~~~~-----------~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~----l~~L~~~~~vI 144 (270)
T 3sop_A 84 EKYINEQYEKF-----------LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EF----MKHLSKVVNII 144 (270)
T ss_dssp HHHHHHHHHHH-----------HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HH----HHHHHTTSEEE
T ss_pred HHHHHHHHHhh-----------hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HH----HHHHHhcCcEE
Confidence 11111111111 224799999999999999875 9999999999999762 22 33333348999
Q ss_pred EEccCcCcc
Q 039402 797 YVTHQVEFL 805 (1496)
Q Consensus 797 lvtH~~~~l 805 (1496)
+|.|..+.+
T Consensus 145 ~Vi~K~D~l 153 (270)
T 3sop_A 145 PVIAKADTM 153 (270)
T ss_dssp EEETTGGGS
T ss_pred EEEeccccC
Confidence 999987665
No 152
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.70 E-value=7.4e-17 Score=191.60 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCCCCCChHHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEE
Q 039402 738 ERGINLSGGQKQ------RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 738 ~~g~~LSGGQkq------Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 811 (1496)
....+||||||| |+++|||+..+|+++||||||++||+.....+++.+.....+++|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 456789999999 67888999999999999999999999999888764333334578999999998777779999
Q ss_pred EEEe--CCe
Q 039402 812 LVMK--DGK 818 (1496)
Q Consensus 812 ~~l~--~G~ 818 (1496)
++|+ +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9986 454
No 153
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.70 E-value=3.6e-19 Score=223.77 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=121.3
Q ss_pred EeCCCCCccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHH--HhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccc
Q 039402 1254 RYAPQMPLVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQT--LFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP 1330 (1496)
Q Consensus 1254 ~Y~~~~~~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~--L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp 1330 (1496)
+|+.+ .++|++||| .|++||.++|+|+||||||||++. +.|+.+|.+|.|+++|.+. .......++++++++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 45544 459999999 999999999999999999999999 6899999999999999883 334455677899999998
Q ss_pred cccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc-cCCCEEEEEcC
Q 039402 1331 VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL-KRSKILMLDEA 1409 (1496)
Q Consensus 1331 ~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL-r~~~ILiLDEa 1409 (1496)
... +++.. +++.. +++.+++++..++.+ ++-.+.++|- .+|++|+||||
T Consensus 98 ~~~-~~l~~-~~~~~---~~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 98 VDE-GKLFI-LDASP---DPEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp HHT-TSEEE-EECCC---CSSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECS
T ss_pred hcc-CcEEE-EecCc---ccchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCH
Confidence 631 11111 11111 000111111111111 2222333332 35789999999
Q ss_pred CCC-----CCHHHHHHHHHHHHHhc-CCcEEEEEccCcchh---------cc-cCEEEEEeCC
Q 039402 1410 TAS-----VDTATDNLIQQTLRQHF-SDCTVLTIAHRITSV---------ID-SDLVLLLNHG 1456 (1496)
Q Consensus 1410 Tss-----lD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti---------~~-~DrIlVL~~G 1456 (1496)
|+. +|+...+.+.+.+++.. .++|||+|+|+++.+ .. ||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 984 58899889998887653 489999999999885 34 9999999993
No 154
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.69 E-value=1.6e-18 Score=201.69 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=114.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCc-cC-CC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPW-IQ-SG 695 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~-i~-~~ 695 (1496)
+++||++++|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++. .+ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999998762 589999886 54 45
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV 773 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL 773 (1496)
|++||+.++.... +. ..-++. .|..........+|| |||++||||+..+|+ +++|| ||+++
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 8999987642100 00 000111 111111223345688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcC---------cccc-CCEEEEEeCCeE
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVE---------FLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~~-~d~i~~l~~G~i 819 (1496)
|+.....-| . ...+.|+|++||.-+ .... .+.|.++..|+.
T Consensus 234 D~~~~~~~~----~-~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQAREF----N-EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHHHHH----H-HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHHHH----H-HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 997543211 1 124899999999322 2222 567888888853
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.68 E-value=2.2e-17 Score=192.43 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=120.6
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
++|+++++.+++||.++|+||+|||||||++.|.+...|.+| +|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77665544 3566777777666655432 1122
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH-HHHHHHHHHHccCCCEEEEEcCCC---C---
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ-RQLVCLGRVLLKRSKILMLDEATA---S--- 1412 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ-rQll~LARALLr~~~ILiLDEaTs---s--- 1412 (1496)
|+.. ...++++..++.+.. +.. .++ .+.+...++|.+| +|++. |+++..+|++||+||||+ +
T Consensus 97 ~l~~-~~~~~~~~~~~~~~~-----l~~--~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKR-EIIENGKFDQWFDEL-----FGN--DTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHH-HHHHHTHHHHHHHHH-----HSS--SCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccc-CCCCHHHHHHHHHHH-----hcc--CCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 2211 011223333322221 111 111 1223334689999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhc--CCcEEEEEccCc--c--------------------hhc-ccCEEEEEeCCeE
Q 039402 1413 VDT-ATDNLIQQTLRQHF--SDCTVLTIAHRI--T--------------------SVI-DSDLVLLLNHGLI 1458 (1496)
Q Consensus 1413 lD~-~Td~~Iq~~I~~~f--~~~TVI~IAHRl--~--------------------ti~-~~DrIlVL~~G~I 1458 (1496)
+|. .....+.+.|++.. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 44456777776654 289999999995 4 454 5999999999985
No 156
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.67 E-value=4.3e-17 Score=216.57 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=123.5
Q ss_pred cceEEEEe-----EEeEeCCCCCccceeeeEEeeC-------CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1243 HGKIDLLD-----LQVRYAPQMPLVLQGISCTFPG-------GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1243 ~g~I~f~n-----vs~~Y~~~~~~vLk~iS~~I~~-------GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
.+.|+++| |+++|..+ ..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred CceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 34699999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCChHHHhcccE-EEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1311 ISLIGLHDLRSRLS-IIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1311 I~~i~l~~LR~~i~-iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
+.++| +|||++. .-|+.+|+-- +.++.+.+. .| -+.+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~---~~--------~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIM---SG--------ESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHh---hc--------hhhhHHHHHH
Confidence 34566 9999984 5577777621 122222221 12 2346777665
Q ss_pred HHHHHHHHccCCCEEEEEcCCCCCCHHH-HHHHHHHHHHhc-C-CcEEEEEccCcchhcc-cCEEEEEeCCeEe--EecC
Q 039402 1390 LVCLGRVLLKRSKILMLDEATASVDTAT-DNLIQQTLRQHF-S-DCTVLTIAHRITSVID-SDLVLLLNHGLIE--EFDN 1463 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEaTsslD~~T-d~~Iq~~I~~~f-~-~~TVI~IAHRl~ti~~-~DrIlVL~~G~Iv--E~g~ 1463 (1496)
+++||+++.+|+++||||||+++|+.. ...+++.|+... + ++|+|++||.++.+.. ||++.|+ +|+++ +.|+
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~ 936 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENE 936 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC----
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecC
Confidence 999999999999999999999999887 466777777654 3 8999999999998875 8999887 58887 5555
Q ss_pred hhh
Q 039402 1464 PAN 1466 (1496)
Q Consensus 1464 p~~ 1466 (1496)
+++
T Consensus 937 ~~~ 939 (1022)
T 2o8b_B 937 CED 939 (1022)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 157
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.66 E-value=2.7e-17 Score=218.41 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=123.1
Q ss_pred ccEEEEe-----eEEEecCCCCCCceeeeeEEEeC-------CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee
Q 039402 616 TALDIVD-----GNFSWDISSHNPTLKDINLKVFH-------GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 683 (1496)
Q Consensus 616 ~~i~~~~-----~~~~~~~~~~~~~L~~i~l~i~~-------G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~ 683 (1496)
..+++++ +++.|. +++++++|++|++++ |++++|+|||||||||||+++ |.+.+. .++
T Consensus 749 ~~l~i~~~rHP~l~~~~~--~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqi 818 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQM 818 (1022)
T ss_dssp CCEEEEEECCCC--------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTT
T ss_pred ceEEEEeccccEEEEEec--CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hhe
Confidence 4689999 888773 246899999999987 999999999999999999999 988752 345
Q ss_pred E-EEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 039402 684 A-YVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD 762 (1496)
Q Consensus 684 ~-yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 762 (1496)
| ||||++. ..|+.|||...- ++.+++ ..+..++|+|+++ +++|+++..+|+
T Consensus 819 G~~Vpq~~~--~l~v~d~I~~ri--------------g~~d~~-----------~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 819 GCYVPAEVC--RLTPIDRVFTRL--------------GASDRI-----------MSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TCCEESSEE--EECCCSBEEEEC--------------C--------------------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred eEEeccCcC--CCCHHHHHHHHc--------------CCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 5 9999874 457778875311 111111 1223567887775 999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEccCcCcccc-CCEEEEEeCCeEE--EecCh
Q 039402 763 IYLFDDPFSAVDAHTGSHLFQEVLLGLL-S-SKTVIYVTHQVEFLPA-ADLILVMKDGKIT--QAGKY 825 (1496)
Q Consensus 763 illLDep~saLD~~~~~~i~~~~~~~~~-~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~G~~ 825 (1496)
++|||||++|+|+..+..+...+++.+. + |.|+|++||+.+.... +|++.++ +|++. ..|+.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999987666556666553 4 8999999999998765 8988886 58877 44443
No 158
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=1.5e-15 Score=180.35 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCCCchHHH------HHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEccCcchhcccCEEEE
Q 039402 1380 GENWSMGQRQ------LVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIAHRITSVIDSDLVLL 1452 (1496)
Q Consensus 1380 G~nLS~GQrQ------ll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti~~~DrIlV 1452 (1496)
...||||||| |+++|||++.+|++|+|||||++||+.+...+.+.|++.. .++|||+|+|+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998854 46799999999776667999999
Q ss_pred Ee
Q 039402 1453 LN 1454 (1496)
Q Consensus 1453 L~ 1454 (1496)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 159
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.65 E-value=3.4e-18 Score=202.45 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=115.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCc-cC-CC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPW-IQ-SG 695 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~-i~-~~ 695 (1496)
.++||++++|++++|+||||||||||++.|+|.++|.+|+|.+.|. ++|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999998762 589999886 44 45
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC
Q 039402 696 KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV 773 (1496)
Q Consensus 696 ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL 773 (1496)
|++||+.++.... +. ..-++. .|......+...+|| |||++||||+..+|+ +++|| ||+++
T Consensus 228 tv~e~l~~~~~~~----------~d-~~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCC----------CH-HHHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 8999987642100 00 000111 111111123345688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCc---------Ccccc-CCEEEEEeCCe
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQV---------EFLPA-ADLILVMKDGK 818 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~---------~~l~~-~d~i~~l~~G~ 818 (1496)
|+.....-|. ...+.|+|++||.- +.... .+.|..+..|+
T Consensus 291 D~~~~~~~~~-----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQAREFN-----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHHHHHH-----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHHHHH-----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9986432221 12489999999932 22222 56788888875
No 160
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.65 E-value=6.7e-19 Score=194.37 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---------cCeeEEEccCCccCC-CcHHHHh
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---------CGTKAYVAQSPWIQS-GKIEDNI 701 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---------~g~~~yv~Q~~~i~~-~ti~eNI 701 (1496)
..++++| .++++|++++|+||||||||||+++|+|+++...+.+.+ ...++|++|++..+. .|+.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 4578888 799999999999999999999999999998632222111 123689999987654 3666666
Q ss_pred cc-----C--C--CCCHHHHHHHHHHh-chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH---HHccCCCEEEEec
Q 039402 702 LF-----G--K--EMNRERYNAVLDAC-SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR---ALYQDSDIYLFDD 768 (1496)
Q Consensus 702 ~~-----g--~--~~~~~~~~~v~~~~-~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR---Al~~~~~illLDe 768 (1496)
.. + . ....+..++.++.. .+.. ..++.|.+.++-..++ |++.+|++++|||
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~----------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI----------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEE----------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEE----------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 42 1 1 11222222222221 0000 0123333333333333 8899999999999
Q ss_pred CCCCC----CHHHHHHHHHHHHHHHh--CCcEEEEEccCcCcccc-CCEEEEEe
Q 039402 769 PFSAV----DAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPA-ADLILVMK 815 (1496)
Q Consensus 769 p~saL----D~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~ 815 (1496)
||+++ |+...+++.+ .+..+. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 150 p~~~l~~~~d~~~~~~l~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDT-ARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHH-HHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCHHHHHHHHHH-HHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99998 6777777754 444442 47999999999998765 99999985
No 161
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.63 E-value=7.6e-18 Score=202.26 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=110.0
Q ss_pred cceeeeEEeeC--CcEEEEEcCCCCCHHHHHHHHhcccCCCc----cEEEE----CCeeCCCCChHHHhcccEEEccccc
Q 039402 1262 VLQGISCTFPG--GEKTGIVGRTGSGKSTLIQTLFRIVEPAA----GQILI----DGIDISLIGLHDLRSRLSIIPQDPV 1331 (1496)
Q Consensus 1262 vLk~iS~~I~~--GekvgIVGrTGSGKSTLl~~L~rl~ep~~----G~I~I----DG~dI~~i~l~~LR~~i~iIpQdp~ 1331 (1496)
+.+.|+++|++ |+++||+|+||||||||+++|.|+++|++ |+|++ +|.++ .+...++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5666677 56999999999
Q ss_pred ccccchhhccCCCC-CCcHHHHHHHHHHcCCcHHHHhccCC--ccc--------ccccCCCCCCchHHHHHHHHHHH---
Q 039402 1332 MFEGTVRSNLDPLE-ESTDEQIWEALDKCQLGDEVRKKEGK--LDS--------KVTENGENWSMGQRQLVCLGRVL--- 1397 (1496)
Q Consensus 1332 LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~lp~g--Ldt--------~v~e~G~nLS~GQrQll~LARAL--- 1397 (1496)
+|.+|+++||..+. ...+...+..+...+....+...+.+ .|. +..++|.++|+||+||.+++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999997543 34456677766666667776665432 333 33366778888999999999988
Q ss_pred cc--CCCEEEEEcCC
Q 039402 1398 LK--RSKILMLDEAT 1410 (1496)
Q Consensus 1398 Lr--~~~ILiLDEaT 1410 (1496)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 76 78899999886
No 162
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.63 E-value=1.9e-17 Score=196.10 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=133.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeE----EEccCCcc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----YVAQSPWI 692 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~----yv~Q~~~i 692 (1496)
.++++++++.|.. +..+++++ |+|.+||+++|+||||||||||+++|+|..+|+.|.|.+.|... ...+. +
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~--~ 119 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL--L 119 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--S
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--h
Confidence 4677788888852 45799999 99999999999999999999999999999999999888776320 00000 0
Q ss_pred CCCcHHHHhccCCCC---CHHHHHHHHHHhchhhHHHhccCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 039402 693 QSGKIEDNILFGKEM---NRERYNAVLDACSLKKDLEILSFGDQ-TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768 (1496)
Q Consensus 693 ~~~ti~eNI~~g~~~---~~~~~~~v~~~~~l~~d~~~l~~g~~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1496)
.....+..+.+.... ..+++......+.+.+.+.. .|.+ -.+-+...+||+|| |||++| ..+|++
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 120 PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 000011112221111 13445555555554433222 1211 11124567899999 899999 578887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh---CCc-----EEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 769 PFSAVDAHTGSHLFQEVLLGLL---SSK-----TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 769 p~saLD~~~~~~i~~~~~~~~~---~~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
|+|+|+.....+.+ +++.+. .|. ||+++|||++ -+.||++++|.+|+|+.+|+.+++
T Consensus 189 -t~Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 99999999887754 555443 366 9999999998 455999999999999998877654
No 163
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=2.8e-18 Score=194.45 Aligned_cols=166 Identities=13% Similarity=0.158 Sum_probs=106.8
Q ss_pred CCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchh
Q 039402 1259 MPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVR 1338 (1496)
Q Consensus 1259 ~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR 1338 (1496)
...+|+|+||++++|+.|||+|++|||||||++.|.+++ |.+.+| ..+++++++|||++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 346999999999999999999999999999999999976 655554 467889999999744445888
Q ss_pred hccCC------CC---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcC
Q 039402 1339 SNLDP------LE---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409 (1496)
Q Consensus 1339 ~NLdp------~~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1409 (1496)
+|+.. +. ....+++.+.|+. +..+.+..+ ..+|+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 87531 11 1223344455443 123334333 4689999999988 688899999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh-cc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1410 TASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV-ID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1410 TsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti-~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
....|.. +++. .+.||+++||....+ .. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8777653 2332 489999999974333 32 3333 6675 6677764
No 164
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=4.2e-17 Score=193.96 Aligned_cols=167 Identities=20% Similarity=0.139 Sum_probs=120.1
Q ss_pred cceee-eEEeeCCcEEEEEcCCCCCHHHHHHHHhccc--CCCc----cE-EEECCeeCCCCChHHHhcccEEEccccccc
Q 039402 1262 VLQGI-SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV--EPAA----GQ-ILIDGIDISLIGLHDLRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1262 vLk~i-S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~--ep~~----G~-I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1333 (1496)
.|+.+ .+.|++|+.++|+|++|||||||++.+.+.+ +|++ |+ |+||+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 45555 5899999999999999999999999999998 6666 68 999997752 267889999999888
Q ss_pred ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc-------cCCCEEEE
Q 039402 1334 EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL-------KRSKILML 1406 (1496)
Q Consensus 1334 ~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL-------r~~~ILiL 1406 (1496)
..|+++|+.....++ |.+|+|++.++++++ .+|++||+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 889999986432211 346778888888877 68999999
Q ss_pred EcCCCCCCHHH-------H-----HHHHHHHHHhc--CCcEEEEEccCcchhcc-cCEEEEEeCCeEeEecChhhHhh
Q 039402 1407 DEATASVDTAT-------D-----NLIQQTLRQHF--SDCTVLTIAHRITSVID-SDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1407 DEaTsslD~~T-------d-----~~Iq~~I~~~f--~~~TVI~IAHRl~ti~~-~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
||||+.+|++. + ..+.+.|++.. .++|||+++|....+.. ++.+.+...|++++++.+..|.-
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l 315 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYL 315 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEEE
Confidence 99999999863 1 22333334332 38999999998775532 34577888999999998888753
No 165
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.62 E-value=3.1e-17 Score=185.72 Aligned_cols=181 Identities=11% Similarity=0.080 Sum_probs=111.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh--cccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF--RIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~--rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
+++++++..|+. ...+|.| .|++||.++|+||||||||||++.|. ++.++.+|.+.+++.+.. -.....++++
T Consensus 7 ~~~~~i~tg~~~-lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPG-FDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA-RDLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTT-TGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHHTT
T ss_pred cccceeecCCHh-HHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH-HHHHHHHHHc
Confidence 344555555532 2224443 78999999999999999999999999 775677888888875432 1223345678
Q ss_pred EEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++.+|++..+.. ++.++..........+....+ ...+.++.+....+..-..+|+
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~p~ 137 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAINAK 137 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTCS
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceecc------------------------CcccHHHHHHHHHHHHHhhCCC
Confidence 999998754432 444433211100000000000 0112344444344444457999
Q ss_pred EEEEEcCCCCCC-----HHHHHHHHHHHHHhc-CCcEEEEEccCcchh----------ccc-CEEEEEeC
Q 039402 1403 ILMLDEATASVD-----TATDNLIQQTLRQHF-SDCTVLTIAHRITSV----------IDS-DLVLLLNH 1455 (1496)
Q Consensus 1403 ILiLDEaTsslD-----~~Td~~Iq~~I~~~f-~~~TVI~IAHRl~ti----------~~~-DrIlVL~~ 1455 (1496)
+|+|||||+.+| ....+.+.+.++... .++|||+++|.++.+ .-| |+|++|++
T Consensus 138 ~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 138 RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999997 666666777776543 489999999999886 347 99999963
No 166
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=9.7e-17 Score=190.54 Aligned_cols=147 Identities=20% Similarity=0.181 Sum_probs=111.2
Q ss_pred EeEEeEeCCCCCccceeeeE-------EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECCeeCCCCChHHHh
Q 039402 1249 LDLQVRYAPQMPLVLQGISC-------TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDGIDISLIGLHDLR 1320 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~-------~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG~dI~~i~l~~LR 1320 (1496)
.++++||.+..++.|+++.+ ...+|+.++|+||||||||||+++|.|+++|+ +|.|...+-++ .+. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 67889997766778888876 78899999999999999999999999999987 56665544333 222 34
Q ss_pred cccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1321 SRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1321 ~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
...++++|.+.-... + + ..+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~~-----~------~------------------------------------~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRDT-----L------G------------------------------------FSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTTB-----S------C------------------------------------HHH----HHHHHTTSC
T ss_pred ccccceeeeeecccc-----C------C------------------------------------HHH----HHHHHhhhC
Confidence 455667776532210 0 0 000 999999999
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCC
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHG 1456 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G 1456 (1496)
|++|++|||| |.++.+.+.+.. ..|+|||+++|..+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 888766555543 3589999999999999889999888543
No 167
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.62 E-value=4.6e-16 Score=204.15 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=119.3
Q ss_pred ccEEEEeeEEEecC--CCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHH--------hcCCCCCccEEEEcCeeEE
Q 039402 616 TALDIVDGNFSWDI--SSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCI--------LGEVPKISGTLKLCGTKAY 685 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~--~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~i--------lG~~~~~~G~i~~~g~~~y 685 (1496)
..+.++++.--+-. .+.+.+++|++|++++|++++|+|||||||||||+++ .|.+.|.++.. ++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~ 704 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSI 704 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EEC
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chH
Confidence 34677665332211 1245789999999999999999999999999999999 66555543321 110
Q ss_pred EccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCE
Q 039402 686 VAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL--YQDSDI 763 (1496)
Q Consensus 686 v~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~i 763 (1496)
+ +.|+ ...++.++ ....+|+|++++..+|+++ ..+|++
T Consensus 705 ~------------d~i~--------------~~ig~~d~--------------l~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 705 V------------DCIL--------------ARVGAGDS--------------QLKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp C------------SEEE--------------EECC-----------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred H------------HHHH--------------HhcCchhh--------------HHHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0 1110 00011111 1245888888888888888 899999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHH
Q 039402 764 YLFDDPFSAVDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 764 llLDep~saLD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l 828 (1496)
+|||||++|+|+..+..+...+++.+. .|+|+|++||+.+....||++..+++|++...++.+++
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999998888666666553 38999999999888878999999999999887776554
No 168
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.62 E-value=1.6e-15 Score=186.18 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEccCcchhcccCEEEEEeC
Q 039402 1382 NWSMGQRQLVCLGRVLL----KRSKILMLDEATASVDTATDNLIQQTLRQHFS-DCTVLTIAHRITSVIDSDLVLLLNH 1455 (1496)
Q Consensus 1382 nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~~~DrIlVL~~ 1455 (1496)
.|||||||+++|||+|. ++|++++|||||++||+.....+.+.|++... +.|+|+|+|+...+..||+++++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 49999999999999999 68999999999999999999999999988653 6899999999888888999999963
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.61 E-value=5.7e-17 Score=184.95 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcCe-eEEEccCCccCCCcHHHHhccCCCCCHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGT-KAYVAQSPWIQSGKIEDNILFGKEMNRER 711 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g~-~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~ 711 (1496)
++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.|++|++.- +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~----------~-------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS----------I-------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS----------E--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce----------e--------
Confidence 5899999 9999999999999999999999999999998 999988763 4555554210 0
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhC
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLS 791 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~ 791 (1496)
.. +..+|....+| |++|||||.++||++++|||+ |+++...+. +....
T Consensus 75 ---------v~----------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~~~ 122 (261)
T 2eyu_A 75 ---------VN----------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETAL----RAAET 122 (261)
T ss_dssp ---------EE----------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHHHT
T ss_pred ---------ee----------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHHcc
Confidence 00 00122222233 899999999999999999999 998865443 33456
Q ss_pred CcEEEEEccCcCccccCCEEEEEeC
Q 039402 792 SKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 792 ~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
|.||+++||+.+....+|+++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 9999999999886666899888854
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=5.5e-17 Score=178.57 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=108.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc-----CCCccEEEE-------CCeeC-
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV-----EPAAGQILI-------DGIDI- 1311 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~-----ep~~G~I~I-------DG~dI- 1311 (1496)
.|+++|++++|.. +++++ |++++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 3789999999962 48888 899999999999999999999999999998 888888765 23322
Q ss_pred --CCCC--------hHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCC
Q 039402 1312 --SLIG--------LHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENG 1380 (1496)
Q Consensus 1312 --~~i~--------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G 1380 (1496)
.... .+.+|+.++.+.|++..+++ ++..++.-.....++++.+.++..++.. ..+...-
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~nK~ 147 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV----------LVLLTKA 147 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE----------EEEEECG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe----------EEEEecc
Confidence 2211 13455556666665444433 4444443222223445655555433211 1134444
Q ss_pred CCCCchHHHH-HHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcC
Q 039402 1381 ENWSMGQRQL-VCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFS 1430 (1496)
Q Consensus 1381 ~nLS~GQrQl-l~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~ 1430 (1496)
..+|+||||+ +..+|+++++++++++|||||++|...-..+.+.|.+..+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 5689999999 8999999999999999999999999999999988887653
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.60 E-value=4.7e-16 Score=173.63 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=100.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-------CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-------AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL 1341 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL 1341 (1496)
-|++||.++|+||||||||||++.|.+.+.| .+|.|++++.+.. . +.+++.++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996655 4558889886531 1 2456777888777767888887
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHcc-------CCCEEEEEcCCCCCC
Q 039402 1342 DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLK-------RSKILMLDEATASVD 1414 (1496)
Q Consensus 1342 dp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr-------~~~ILiLDEaTsslD 1414 (1496)
......+.. .|++.+..+++++. +|++|+|||||+.+|
T Consensus 95 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 543222211 22233344444443 899999999999999
Q ss_pred HHH-------H-----HHHHHHHHHhc--CCcEEEEEcc----Ccchhcc-cCEEEEEeCCe
Q 039402 1415 TAT-------D-----NLIQQTLRQHF--SDCTVLTIAH----RITSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1415 ~~T-------d-----~~Iq~~I~~~f--~~~TVI~IAH----Rl~ti~~-~DrIlVL~~G~ 1457 (1496)
++. + ..+.+.|++.. .++|||+|+| .-..+.. ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 842 1 13444444332 3899999999 4444765 99999999863
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=4.3e-18 Score=188.09 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=109.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc---chhhccCC-C-
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG---TVRSNLDP-L- 1344 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g---TIR~NLdp-~- 1344 (1496)
.++|+++||+|++|||||||+++|.|++.| ++++++||+++++. |+++|+.. +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 68999999999854 56665421 1
Q ss_pred --CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchH----HHHHHHHHHHccCCCEEEEEcCCCC------
Q 039402 1345 --EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQ----RQLVCLGRVLLKRSKILMLDEATAS------ 1412 (1496)
Q Consensus 1345 --~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQ----rQll~LARALLr~~~ILiLDEaTss------ 1412 (1496)
.....+.+.++++..++.+.+.. | +.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 12345678888877765543322 2 33467774 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHhc--CCcEEEEEccCc
Q 039402 1413 -VDTATDNLIQQTLRQHF--SDCTVLTIAHRI 1441 (1496)
Q Consensus 1413 -lD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl 1441 (1496)
||+.++..+++.+++.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987753 588999999984
No 173
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.59 E-value=2.4e-15 Score=156.24 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=69.2
Q ss_pred cCCCCCCChHHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccCcCccccCC
Q 039402 737 GERGINLSGGQKQRIQIA------RALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSKTVIYVTHQVEFLPAAD 809 (1496)
Q Consensus 737 g~~g~~LSGGQkqRv~LA------RAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d 809 (1496)
.....+||||||||++|| ||+..+|++++|||||++||+.....+.+ .+... .+|+|+|+|||+.+....||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHhCC
Confidence 456789999999999876 99999999999999999999999888865 45444 34899999999997666799
Q ss_pred EEEEE--eCCeE
Q 039402 810 LILVM--KDGKI 819 (1496)
Q Consensus 810 ~i~~l--~~G~i 819 (1496)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
No 174
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=3.4e-17 Score=177.61 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=105.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----------eeEEEccCCccCCCcHHHHhc---cCCCCCHHH
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-----------TKAYVAQSPWIQSGKIEDNIL---FGKEMNRER 711 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-----------~~~yv~Q~~~i~~~ti~eNI~---~g~~~~~~~ 711 (1496)
|++++|+||||||||||+++|+|.++ ++| |.++| .++|++|+. +++ ++|+. |+.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~----- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP----- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEECCCCCC-----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcccccCC-----
Confidence 78999999999999999999999999 899 87765 247888765 222 12221 1000
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHH
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI-QIAR---ALYQDSDIYLFDD--PFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv-~LAR---Al~~~~~illLDe--p~saLD~~~~~~i~~~~ 785 (1496)
+......+|+.+.++|||||+++ +|++ |+..+||++|||| |+..+|+...+.+ +++
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l-~~~ 131 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV-RQT 131 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH-HHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH-HHH
Confidence 00112368899999999999998 5566 6899999999999 8988998765444 233
Q ss_pred HHHHhCCcEEEE--Ec--cCcCccccCCEEEEEeCCeEEEec
Q 039402 786 LLGLLSSKTVIY--VT--HQVEFLPAADLILVMKDGKITQAG 823 (1496)
Q Consensus 786 ~~~~~~~~tvil--vt--H~~~~l~~~d~i~~l~~G~i~~~G 823 (1496)
+ ...+|+|+ ++ |+.+ +..+|+|..+++|+|....
T Consensus 132 l---~~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 L---STPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H---HCSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred H---hCCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 2 24556665 44 8876 5567888888999998753
No 175
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.58 E-value=4.7e-16 Score=200.72 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=113.1
Q ss_pred cceEEEEeEEeEeCC---CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEECCeeCCCCChHH
Q 039402 1243 HGKIDLLDLQVRYAP---QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~---~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I~IDG~dI~~i~l~~ 1318 (1496)
.+.|++++. +++- +...|++|+||+ |+.++|+||||||||||++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457888887 4432 335799999999 99999999999999999999999875 6777642 1 1
Q ss_pred HhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1319 LRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
.+.++++++| +|.. |+++|+.- .+|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHH
Confidence 2567888887 4543 66665421 2588999999999999
Q ss_pred --ccCCCEEEEEcC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEccCcchhccc
Q 039402 1398 --LKRSKILMLDEA---TASVDTATD-NLIQQTLRQHFSDCTVLTIAHRITSVIDS 1447 (1496)
Q Consensus 1398 --Lr~~~ILiLDEa---TsslD~~Td-~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~ 1447 (1496)
+.+|+++||||| |+++|..+. ..+.+.|++ .++|+|++||+.+....+
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 468888877 589999999998765443
No 176
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=2.4e-17 Score=209.82 Aligned_cols=190 Identities=12% Similarity=0.202 Sum_probs=122.4
Q ss_pred eEEEEeEEeEeCCCCCccceee----------eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCeeCCC
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGI----------SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGIDISL 1313 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~i----------S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~ 1313 (1496)
.++++|++..|.....++|+.+ +++++. +||||++|||||||+++|.|+..| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5899999999975444455544 366665 999999999999999999999988 79999999999632
Q ss_pred C---ChHHHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1314 I---GLHDLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1314 i---~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
. ....+|.+++++||++.+++. ||++|+.- +.+..+ .... .+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~~~------~~~~-----------~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNAIA------GEGM-----------GIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHHHH------CSSS-----------CCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHHhc------CCcc-----------ccc---hH
Confidence 2 245688999999999988765 89888741 111110 0001 111 12
Q ss_pred HHHHHHHHccCCCEEEEEcC------CCCCCHHHHHHHHHHHHHhcC---CcEEEEEccCcchh--------c-----cc
Q 039402 1390 LVCLGRVLLKRSKILMLDEA------TASVDTATDNLIQQTLRQHFS---DCTVLTIAHRITSV--------I-----DS 1447 (1496)
Q Consensus 1390 ll~LARALLr~~~ILiLDEa------TsslD~~Td~~Iq~~I~~~f~---~~TVI~IAHRl~ti--------~-----~~ 1447 (1496)
.+.++.+...+|+++++||| |+++|+.+.+.+.+.++++.+ +.++++++|.++.. . ..
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 33344444568999999999 999999999999999998643 45788899987632 1 24
Q ss_pred CEEEEEeCCeEeEecChhhHh
Q 039402 1448 DLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1448 DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
..|.|+.++.+++.|+++++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 679999999999999876554
No 177
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.57 E-value=5.5e-15 Score=153.46 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=73.9
Q ss_pred Cccccc-----ccCCCCCCchHHHHHHHH------HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEc
Q 039402 1371 KLDSKV-----TENGENWSMGQRQLVCLG------RVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLTIA 1438 (1496)
Q Consensus 1371 gLdt~v-----~e~G~nLS~GQrQll~LA------RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~IA 1438 (1496)
+++..+ .....+||||||||++|| ||++++|++|+|||||++||+++...+.+.|++.. .++|||+|+
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 555554 234578999999999876 99999999999999999999999999999999864 478999999
Q ss_pred cCcchhcccCEEEEE--eCCe
Q 039402 1439 HRITSVIDSDLVLLL--NHGL 1457 (1496)
Q Consensus 1439 HRl~ti~~~DrIlVL--~~G~ 1457 (1496)
|+......||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999655569999999 4564
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.57 E-value=3.4e-15 Score=195.91 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=118.0
Q ss_pred cceEEEEeEEeEeCC---CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHH--------hcccCCCccEEEECCeeC
Q 039402 1243 HGKIDLLDLQVRYAP---QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTL--------FRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~---~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L--------~rl~ep~~G~I~IDG~dI 1311 (1496)
.+.|++++..--+-. +.+.|++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 356888876433322 234689999999999999999999999999999998 44443433211
Q ss_pred CCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH
Q 039402 1312 SLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV 1391 (1496)
Q Consensus 1312 ~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll 1391 (1496)
++++ +. .+.+.++.+.+ ..++|+|++++.
T Consensus 702 -----------~~~~------------d~--------------i~~~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 -----------VSIV------------DC--------------ILARVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp -----------EECC------------SE--------------EEEECC-----------------------CHHHHHHH
T ss_pred -----------chHH------------HH--------------HHHhcCchhhH--------------HHhHhhhHHHHH
Confidence 0000 00 01111111111 124688888888
Q ss_pred HHHHHH--ccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhh
Q 039402 1392 CLGRVL--LKRSKILMLDEATASVDTATDNLI-QQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1392 ~LARAL--Lr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~ 1466 (1496)
.+|+++ +.+|+++||||||+++|+.....| +..++... .++|+|++||..+....||++..+.+|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555433 3899999999988888899999999999998877776
Q ss_pred H
Q 039402 1467 L 1467 (1496)
Q Consensus 1467 L 1467 (1496)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 179
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.57 E-value=6.9e-16 Score=199.23 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=103.2
Q ss_pred ccEEEEeeEEEecCC--CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CCccEEEEc--CeeEEEccCC
Q 039402 616 TALDIVDGNFSWDIS--SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KISGTLKLC--GTKAYVAQSP 690 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~i~~~--g~~~yv~Q~~ 690 (1496)
..+.++++ .++.- +++++++|+||+ |++++|+||||||||||+++|.|... +..|.+.-. ..++|++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 35777776 22220 346899999999 99999999999999999999999864 567764221 12445554
Q ss_pred ccCC-CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 039402 691 WIQS-GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL--YQDSDIYLFD 767 (1496)
Q Consensus 691 ~i~~-~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~illLD 767 (1496)
++. .++.||+.+ .+|+|+++++.+|+++ ..+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 222 245554432 3689999999999999 9999999999
Q ss_pred cC---CCCCCHHHHH-HHHHHHHHHHhCCcEEEEEccCcCccccC
Q 039402 768 DP---FSAVDAHTGS-HLFQEVLLGLLSSKTVIYVTHQVEFLPAA 808 (1496)
Q Consensus 768 ep---~saLD~~~~~-~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 808 (1496)
|| |+++|+.... .+.+.+ .. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L-~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEAL-HE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHH-HH--HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHH-Hh--CCCEEEEEeCCHHHHHhh
Confidence 99 9999987653 454433 32 589999999998775544
No 180
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.56 E-value=4.2e-15 Score=173.13 Aligned_cols=169 Identities=12% Similarity=0.103 Sum_probs=104.1
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-EEEEcCeeEEEccCCccCCCcHHHHhcc---CCCC-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-TLKLCGTKAYVAQSPWIQSGKIEDNILF---GKEM- 707 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~i~~~g~~~yv~Q~~~i~~~ti~eNI~~---g~~~- 707 (1496)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+.+| .|.+ +..+.. ...++..+.. +.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~------~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL------AMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE------EESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE------EeCcCC--HHHHHHHHHHHHcCCChh
Confidence 4689999999999999999999999999999999999998877 5533 222210 0011111110 1111
Q ss_pred ----------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEecCCC---C-
Q 039402 708 ----------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQ-KQRIQIARALYQDSDIYLFDDPFS---A- 772 (1496)
Q Consensus 708 ----------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ-kqRv~LARAl~~~~~illLDep~s---a- 772 (1496)
+++.+++..+.. ++..+ -.+.+...++|.+| +||+. |+++..+|+++++|||++ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~-----l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDEL-----FGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHH-----HSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHHH-----hccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 111111111110 11111 11233335789998 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHHh-CCcEEEEEccCc--C--------------------ccc-cCCEEEEEeCCeE
Q 039402 773 --VDA-HTGSHLFQEVLLGLL-SSKTVIYVTHQV--E--------------------FLP-AADLILVMKDGKI 819 (1496)
Q Consensus 773 --LD~-~~~~~i~~~~~~~~~-~~~tvilvtH~~--~--------------------~l~-~~d~i~~l~~G~i 819 (1496)
+|. .....+.+.+..... .|.|||++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 444555543322222 389999999995 4 554 4999999998874
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.56 E-value=2.5e-17 Score=197.01 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=111.0
Q ss_pred EEEeEEeE---eCCCCCccc---------eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1247 DLLDLQVR---YAPQMPLVL---------QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1247 ~f~nvs~~---Y~~~~~~vL---------k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
+|+||+|+ |++..+++| +++||++++|+.++|+|+||||||||+++|.|+++|++|.|.|+|. ..+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 864333466 9999999999999999999999999999999999999999999985 456
Q ss_pred ChHHHhcccEEEc-ccccc---cccchhhccCC-CCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHH
Q 039402 1315 GLHDLRSRLSIIP-QDPVM---FEGTVRSNLDP-LEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQ 1389 (1496)
Q Consensus 1315 ~l~~LR~~i~iIp-Qdp~L---F~gTIR~NLdp-~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1389 (1496)
.+..+|+++++++ |++.+ +..|+++||.. ....+|..+..+++.....+++..++.|.++.+++-+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 6666789999999 99886 78899999952 2223333333333333445667778899999898888887888899
Q ss_pred HHHHHH
Q 039402 1390 LVCLGR 1395 (1496)
Q Consensus 1390 ll~LAR 1395 (1496)
|+....
T Consensus 295 Rl~~l~ 300 (361)
T 2gza_A 295 RLALMV 300 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 182
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=1.9e-15 Score=168.69 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-------EEEEcCee-------EEEccCCccCCCcHHHHhccCCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-------TLKLCGTK-------AYVAQSPWIQSGKIEDNILFGKEM 707 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-------~i~~~g~~-------~yv~Q~~~i~~~ti~eNI~~g~~~ 707 (1496)
-+++|++++|+||||||||||+++|+|.+.+..| .+++++.. ++++|+..+...|+.||+.+....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 5899999999999999999999999996655332 44443321 122222222222333333332221
Q ss_pred CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHH---
Q 039402 708 NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ-------DSDIYLFDDPFSAVDAHT--- 777 (1496)
Q Consensus 708 ~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~-------~~~illLDep~saLD~~~--- 777 (1496)
+ .+.|++++..++++.. +|++++||||++++|+..
T Consensus 101 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~ 145 (231)
T 4a74_A 101 N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 145 (231)
T ss_dssp S-----------------------------------HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred C-----------------------------------hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC
Confidence 1 1223333455555544 999999999999999842
Q ss_pred ----H-----HHHHHHHHHHHh-CCcEEEEEccCcC----cccc-CCEEEEEeCC
Q 039402 778 ----G-----SHLFQEVLLGLL-SSKTVIYVTHQVE----FLPA-ADLILVMKDG 817 (1496)
Q Consensus 778 ----~-----~~i~~~~~~~~~-~~~tvilvtH~~~----~l~~-~d~i~~l~~G 817 (1496)
. ..+++.+..... .|.|||++||..+ .+.. ||++++|++|
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 244444433332 3899999999554 3665 9999999875
No 183
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.55 E-value=1.6e-16 Score=180.02 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=100.7
Q ss_pred CCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCeeEEEccCCccCCCcHHHHhccCCC-
Q 039402 631 SHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGTKAYVAQSPWIQSGKIEDNILFGKE- 706 (1496)
Q Consensus 631 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~~~yv~Q~~~i~~~ti~eNI~~g~~- 706 (1496)
+++++|+|+||++++|++++|+||||||||||+++|.|.+ |.+.+ ...++|++|++.....|+.+|+.+...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999975 43322 245789999975445689988764321
Q ss_pred --------CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 039402 707 --------MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTG 778 (1496)
Q Consensus 707 --------~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~ 778 (1496)
.+.+++.+.++ .+..+.. .....||+||+||+++ +++..+|+++|||||....|...
T Consensus 86 ~~~~~~~~~~~~~~~~~L~---------~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLK---------NIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHH---------HHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-
T ss_pred CCCCCcccccHHHHHHHHH---------HHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-
Confidence 12222222222 2222222 2346899999999988 68889999999999988887642
Q ss_pred HHHHHHHHHHHhCCcEEEEEccCcCcc-cc-CCEEEEEeCCeEEEecChHHHH
Q 039402 779 SHLFQEVLLGLLSSKTVIYVTHQVEFL-PA-ADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 779 ~~i~~~~~~~~~~~~tvilvtH~~~~l-~~-~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
. + ..+.|++++||+...+ .. ++.+ ++|+ +.+++.
T Consensus 151 ---~-~-----~~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 151 ---R-D-----MFHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp ---H-T-----TCSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ---H-H-----hcCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 1 1 1488999999974333 33 3333 5564 455554
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.54 E-value=1.9e-15 Score=197.70 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=99.0
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHH
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRE 710 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~ 710 (1496)
++++++|++|++++|++++|+|||||||||||+++.+.... ..| .++|++..- -.+.++|.-
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~~--i~~~d~i~~------- 721 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEAT--IGIVDGIFT------- 721 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEEE--EECCSEEEE-------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhhh--hhHHHHHHH-------
Confidence 46899999999999999999999999999999998653211 001 122221100 000011100
Q ss_pred HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 039402 711 RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL 790 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~ 790 (1496)
..++.+ .+..+..++|+|++|++.++|+ ..+|+++|||||++|+|+..+..+...+++.+.
T Consensus 722 -------~ig~~d-----------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 722 -------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp -------EC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred -------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 001111 1223346899999999999999 899999999999999999999888766776552
Q ss_pred --CCcEEEEEccCcCccccCCEE
Q 039402 791 --SSKTVIYVTHQVEFLPAADLI 811 (1496)
Q Consensus 791 --~~~tvilvtH~~~~l~~~d~i 811 (1496)
.|.|+|++||+.+....+|+.
T Consensus 783 ~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 783 RDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HTTCCEEEEECSCGGGGGHHHHT
T ss_pred HhcCCeEEEEeCcHHHHHHHhhc
Confidence 489999999999877656543
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.53 E-value=9.3e-17 Score=177.39 Aligned_cols=140 Identities=12% Similarity=0.161 Sum_probs=105.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCC---CcHHHHhcc--CC--CCCHHHHHHH
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS---GKIEDNILF--GK--EMNRERYNAV 715 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~---~ti~eNI~~--g~--~~~~~~~~~v 715 (1496)
.++|++++|+||||||||||+++|.|.++| .++|++|++.++. .|+++|+.+ +. ..+.++..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999998875 5899999998763 367776544 32 2455566666
Q ss_pred HHHhchhhHHHhccCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHH
Q 039402 716 LDACSLKKDLEILSFGDQTVIGERGINLSGGQ----KQRIQIARALYQDSDIYLFDDPFSA-------VDAHTGSHLFQE 784 (1496)
Q Consensus 716 ~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQ----kqRv~LARAl~~~~~illLDep~sa-------LD~~~~~~i~~~ 784 (1496)
++..++.+. +...+.++|+|| +||+++||++..+|+++++|||+++ ||+.....+.+.
T Consensus 74 l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 74 AQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 555433221 223466788885 5799999999999999999999999 999888877654
Q ss_pred HHHH-HhCCcEEEEEccCc
Q 039402 785 VLLG-LLSSKTVIYVTHQV 802 (1496)
Q Consensus 785 ~~~~-~~~~~tvilvtH~~ 802 (1496)
+.+. ..+|+|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4333 23689999999984
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=9.8e-16 Score=185.24 Aligned_cols=166 Identities=14% Similarity=0.174 Sum_probs=101.1
Q ss_pred ceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhccc
Q 039402 1244 GKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
+.|+++|++++|+. ..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 56999999999964 35999999998 99999999999999999999876665 2444432211 1124678
Q ss_pred EEEccccccc-ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC
Q 039402 1324 SIIPQDPVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK 1402 (1496)
Q Consensus 1324 ~iIpQdp~LF-~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ 1402 (1496)
++++|++.++ ..||.+|+........++.|+.+. +.+.+ .++.+.+|+++||||++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~-----~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI-----DYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHH-----HHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHH-----HHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 569999986433323333333321 12221 234466789999999999999
Q ss_pred ---EEEEEcCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1403 ---ILMLDEAT-ASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1403 ---ILiLDEaT-sslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
+|++|||| +++|+..... .+.| ..++++|.|.|+.+++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~-lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEF-MKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHH-HHHH---TTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHHH-HHHH---hccCcEEEEEEcccCc
Confidence 99999999 6999876433 3333 3478999999988765
No 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.53 E-value=4.4e-14 Score=173.29 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccCcCccccCCEEEEEe
Q 039402 741 INLSGGQKQRIQIARALY----QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTHQVEFLPAADLILVMK 815 (1496)
Q Consensus 741 ~~LSGGQkqRv~LARAl~----~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~ 815 (1496)
..||||||||++||+++. .+|+++|||||+++||+.....+.+ .+.... ++.++|++||+.+.+..||++++|.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999998 6899999999999999999888865 444443 3789999999987777899999986
No 188
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=4.1e-15 Score=173.04 Aligned_cols=163 Identities=14% Similarity=0.114 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHH--hcccEEEccccccccc-chhhccCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDL--RSRLSIIPQDPVMFEG-TVRSNLDPL 1344 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~L--R~~i~iIpQdp~LF~g-TIR~NLdp~ 1344 (1496)
+|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+ +..+ |.++++++|++.+++. |+++|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~- 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA- 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999999997764 2333 4579999999877654 67777631
Q ss_pred CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCCCHHHHHHHH
Q 039402 1345 EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASVDTATDNLIQ 1422 (1496)
Q Consensus 1345 ~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTsslD~~Td~~Iq 1422 (1496)
+..+ +....+-..++.++. ....++..++||.++|||+..+|+ +|+|| |+++.| +.
T Consensus 180 ----------~~~~-~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 180 ----------MKAR-GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp ----------HHHH-TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred ----------HHhC-CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 1111 111111111221111 111245677999999999999999 66777 555543 22
Q ss_pred HHHHHhc--CCcEEEEEccCcchhccc----------CEEEEEeCCe
Q 039402 1423 QTLRQHF--SDCTVLTIAHRITSVIDS----------DLVLLLNHGL 1457 (1496)
Q Consensus 1423 ~~I~~~f--~~~TVI~IAHRl~ti~~~----------DrIlVL~~G~ 1457 (1496)
+.+++.. .+.|+|++||.-.+.... -.|..+..|+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 2232221 278999999976553222 3566666665
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=1.1e-15 Score=178.24 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=79.2
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc-cCCCccEEEECCeeCCCCChHHHhcccEEEc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI-VEPAAGQILIDGIDISLIGLHDLRSRLSIIP 1327 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIp 1327 (1496)
+||+.+|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. .. . ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEe
Confidence 478888864 35999999988 99999999999999999998 889999 9999988753 11 1 46789999
Q ss_pred cccccc-ccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEE
Q 039402 1328 QDPVMF-EGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILML 1406 (1496)
Q Consensus 1328 Qdp~LF-~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiL 1406 (1496)
|++.++ .-|+.+|........+++-++.+ .+.+.. ..+..+ .++|+|||||+.+|||+. +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l-----~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTI-----ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTH-----HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHH-----HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 44888887532211111111111 011111 111111 347999999999999985 9999
Q ss_pred EcCCCC-CCHHHHHHHHHHHHHhc--CCcEEEEEccCcch
Q 039402 1407 DEATAS-VDTATDNLIQQTLRQHF--SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1407 DEaTss-lD~~Td~~Iq~~I~~~f--~~~TVI~IAHRl~t 1443 (1496)
||||++ +|+... +.+++.. .+.++|...|++.+
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 3333332 25678888898754
No 190
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.49 E-value=6.9e-14 Score=149.03 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCCCCchHHHHHHHHHHHc----cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE--
Q 039402 1380 GENWSMGQRQLVCLGRVLL----KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL-- 1453 (1496)
Q Consensus 1380 G~nLS~GQrQll~LARALL----r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL-- 1453 (1496)
..+||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|+||..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988889999999999999899999855
Q ss_pred eCCeE
Q 039402 1454 NHGLI 1458 (1496)
Q Consensus 1454 ~~G~I 1458 (1496)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56753
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=1.1e-14 Score=162.46 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=114.2
Q ss_pred ccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc---ccEEEcccccccccc
Q 039402 1261 LVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS---RLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1261 ~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~---~i~iIpQdp~LF~gT 1336 (1496)
+.|++++. .+++|+.++|+|++|||||||++.|.+...+.+|++.+.+.+.. .+.++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhh----
Confidence 47889988 89999999999999999999999999988888899888776543 344333 34444443221
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCC--EEEEEcCCCCC-
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSK--ILMLDEATASV- 1413 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~--ILiLDEaTssl- 1413 (1496)
+++......... .. +. .+. ...|.+|.+..+.+.+...+|+ +||+||||+.+
T Consensus 83 --~~~~~~~~~~~~-----~~-----------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE-----KE-----------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc-----cC-----------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111100000000 00 00 011 1238899988888777777999 99999999888
Q ss_pred -CHHHHHHHHHHHHHhc--CCcEEEEEccCc--------chhcc-cCEEEEEeCCe
Q 039402 1414 -DTATDNLIQQTLRQHF--SDCTVLTIAHRI--------TSVID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1414 -D~~Td~~Iq~~I~~~f--~~~TVI~IAHRl--------~ti~~-~DrIlVL~~G~ 1457 (1496)
|+.....+.+.|++.. .++|||+++|.. +.+.. ||+|++|++.+
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9887777777777653 489999999998 44655 99999998754
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.48 E-value=2.8e-14 Score=159.20 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=104.4
Q ss_pred CCceeeeeE-EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHH
Q 039402 633 NPTLKDINL-KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRER 711 (1496)
Q Consensus 633 ~~~L~~i~l-~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~ 711 (1496)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+. |+..+. ..+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~------~~~~~~-----------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI------YVTTEE-----------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE------EEESSS-----------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE------EEEccc-----------------CHHH
Confidence 457888887 8999999999999999999999999998877666553 333221 1111
Q ss_pred HHHHHHHhchhhHHHhccCCCcccccC---------CCCCCChHHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHH
Q 039402 712 YNAVLDACSLKKDLEILSFGDQTVIGE---------RGINLSGGQKQRIQIARALYQDSD--IYLFDDPFSAV--DAHTG 778 (1496)
Q Consensus 712 ~~~v~~~~~l~~d~~~l~~g~~t~ig~---------~g~~LSGGQkqRv~LARAl~~~~~--illLDep~saL--D~~~~ 778 (1496)
..+.+...+. +.+.....+...+.. .....|.+|.++...+.+...+|+ ++++|||++.+ |+...
T Consensus 66 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~ 143 (235)
T 2w0m_A 66 IIRQAKQFNW--DFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA 143 (235)
T ss_dssp HHHHHHHTTC--CCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH
T ss_pred HHHHHHHhcc--hHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH
Confidence 1111111111 011110000010100 012348999998888887778999 99999999888 99877
Q ss_pred HHHHHHHHHHH-hCCcEEEEEccCc--------Ccccc-CCEEEEEeCC
Q 039402 779 SHLFQEVLLGL-LSSKTVIYVTHQV--------EFLPA-ADLILVMKDG 817 (1496)
Q Consensus 779 ~~i~~~~~~~~-~~~~tvilvtH~~--------~~l~~-~d~i~~l~~G 817 (1496)
..+++.+.... ..|.|+|++||+. ..+.. ||+|++|++.
T Consensus 144 ~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 144 RKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 77776544333 2489999999998 44554 9999999864
No 193
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=6.9e-15 Score=174.90 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=99.0
Q ss_pred Cceeee-eEEEeCCcEEEEEecCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCe-------eEEEccCCccCCCcHH
Q 039402 634 PTLKDI-NLKVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKIS----GT-LKLCGT-------KAYVAQSPWIQSGKIE 698 (1496)
Q Consensus 634 ~~L~~i-~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~~~----G~-i~~~g~-------~~yv~Q~~~i~~~ti~ 698 (1496)
+.|+++ ++.+++|++++|+||||||||||++.++|.. +|++ |+ |++++. +++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 456665 6899999999999999999999999999998 6666 56 666653 2344555444444555
Q ss_pred HHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEecCCC
Q 039402 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY-------QDSDIYLFDDPFS 771 (1496)
Q Consensus 699 eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~-------~~~~illLDep~s 771 (1496)
|||.+...++ |++|+|++.++++++ .+|+++++|||++
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5555443222 456777777777777 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHH-hCCcEEEEEccCcCcccc-CCEEEEEeCCeEEEecC
Q 039402 772 AVDAHT------------GSHLFQEVLLGL-LSSKTVIYVTHQVEFLPA-ADLILVMKDGKITQAGK 824 (1496)
Q Consensus 772 aLD~~~------------~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 824 (1496)
++|+.. ..++...+.... ..+.|||+++|....... ++...+...|++.+.+.
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999862 122222222222 248999999998764432 23445566666665544
No 194
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.48 E-value=6.4e-17 Score=193.97 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=132.6
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcC---------eeEEEcc-----CCccCCCcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCG---------TKAYVAQ-----SPWIQSGKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g---------~~~yv~Q-----~~~i~~~ti~ 698 (1496)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .++|++| ++..++.+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566665 8999999999999999999999999999998 89996533 4578999 7888889999
Q ss_pred HHhccCCCC-------CHHHHHHHHHHhchh-----------------hHH------------HhccCCCcccccCCCCC
Q 039402 699 DNILFGKEM-------NRERYNAVLDACSLK-----------------KDL------------EILSFGDQTVIGERGIN 742 (1496)
Q Consensus 699 eNI~~g~~~-------~~~~~~~v~~~~~l~-----------------~d~------------~~l~~g~~t~ig~~g~~ 742 (1496)
+|+....+. |.+....+++++... .-+ ..++.+.++.+++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999875444 777776767665321 111 12456778899999999
Q ss_pred CChHHHHHHHHHHHHccCCCE--EEEecCCCCCCHHH--H------HHHHHHHHHHHhCCcEEEEEccCcCc
Q 039402 743 LSGGQKQRIQIARALYQDSDI--YLFDDPFSAVDAHT--G------SHLFQEVLLGLLSSKTVIYVTHQVEF 804 (1496)
Q Consensus 743 LSGGQkqRv~LARAl~~~~~i--llLDep~saLD~~~--~------~~i~~~~~~~~~~~~tvilvtH~~~~ 804 (1496)
+||| ||+++||+++.+|+| +|+||+++++|... + ..+.+..+....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999652 1 23456666667789999999999863
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=1.2e-14 Score=164.48 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=85.3
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHh--cCCCCCccEEEEcCeeEEEccCCccCCCcHHHHh-ccCCCCCHHHHHHHHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCIL--GEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNI-LFGKEMNRERYNAVLDA 718 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~il--G~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI-~~g~~~~~~~~~~v~~~ 718 (1496)
.+++|++++|+||||||||||+++|+ |..++.+|.+.+++.. +. ..+++.. .+| +..+.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~g--~~~~~~~~---- 90 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE------RA---RDLRREMASFG--WDFEKYEK---- 90 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS------CH---HHHHHHHHTTT--CCHHHHHH----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC------CH---HHHHHHHHHcC--CChHHHhh----
Confidence 68999999999999999999999999 6645666666665421 00 0011110 011 11111000
Q ss_pred hchhhHHHhccCCC--c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCC-----HHHHHHHHHHHHHHH-
Q 039402 719 CSLKKDLEILSFGD--Q-TVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD-----AHTGSHLFQEVLLGL- 789 (1496)
Q Consensus 719 ~~l~~d~~~l~~g~--~-t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD-----~~~~~~i~~~~~~~~- 789 (1496)
.......+..+... . ..........+-++.++...+..-..+|++++||||++++| +...+.+ .+++..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l-~~l~~~l~ 169 (251)
T 2ehv_A 91 EGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVL-LKLNTILL 169 (251)
T ss_dssp TTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHH-HHHHHHHH
T ss_pred cCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHH-HHHHHHHH
Confidence 00000000000000 0 00000011123344444444444457999999999999997 4444434 4455444
Q ss_pred hCCcEEEEEccCcCcc----------ccC-CEEEEEeC
Q 039402 790 LSSKTVIYVTHQVEFL----------PAA-DLILVMKD 816 (1496)
Q Consensus 790 ~~~~tvilvtH~~~~l----------~~~-d~i~~l~~ 816 (1496)
..|+|+|++||+++.. ..| |+|++|++
T Consensus 170 ~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 170 EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 3589999999998876 347 99999963
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.46 E-value=9.7e-15 Score=162.13 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeCCCCChHHHhcccEEEccccccccc-ch----hhc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TV----RSN 1340 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TI----R~N 1340 (1496)
-..++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+... ..+..++|+||++.+|.. |+ .+|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999998876542 246789999999988865 44 455
Q ss_pred cCCCCCC---cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHH
Q 039402 1341 LDPLEES---TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTAT 1417 (1496)
Q Consensus 1341 Ldp~~~~---sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~T 1417 (1496)
+..++.+ +.++ ++.++.+++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5432110 1112 34445557999999 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEEeCCeEeEecChhhHhh
Q 039402 1418 DNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLLNHGLIEEFDNPANLLE 1469 (1496)
Q Consensus 1418 d~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~g~p~~Ll~ 1469 (1496)
...+.+.+. .++||++++|+++.+.. |+ +.+| .|+++++.+
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999998876 57899999999998876 43 6777 678888764
No 197
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=3e-14 Score=171.35 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=113.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcc
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1322 (1496)
.++.++ +++|+. . + |+++||++++|+. +|||||||||||||+++|+|+. ++|.++........++.
T Consensus 16 ~l~~~~-~~~y~~-~-~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS-L-P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC-e-e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 456666 778854 3 3 9999999999999 9999999999999999999983 56666655545556778
Q ss_pred cEEEccccccc-ccchhhccCCCCCCcHHHHHHH----HHHcCCcHHHHh-------ccCCcccc-------cccCCCCC
Q 039402 1323 LSIIPQDPVMF-EGTVRSNLDPLEESTDEQIWEA----LDKCQLGDEVRK-------KEGKLDSK-------VTENGENW 1383 (1496)
Q Consensus 1323 i~iIpQdp~LF-~gTIR~NLdp~~~~sd~eI~~a----L~~~~L~~~i~~-------lp~gLdt~-------v~e~G~nL 1383 (1496)
+++++|++.++ .-|+.+|+......+.+..|+. ++. ++.+.+.. ++..-|+. |.+.+..+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 99999999887 4599999976544443332222 111 11111111 12223333 23455567
Q ss_pred CchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcc
Q 039402 1384 SMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF--SDCTVLTIAH 1439 (1496)
Q Consensus 1384 S~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f--~~~TVI~IAH 1439 (1496)
+..+ +.++|+|-.+.+|+++||+|..+.+.--..+.+.|++.+ .+.+|+.|+.
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7666 789999999999999999999998876667777777633 4677888774
No 198
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.44 E-value=1e-15 Score=163.06 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=77.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC---ccEEEEcCee-----------------E----EEccCCccCCCcHHHHhc
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI---SGTLKLCGTK-----------------A----YVAQSPWIQSGKIEDNIL 702 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~---~G~i~~~g~~-----------------~----yv~Q~~~i~~~ti~eNI~ 702 (1496)
++++|+|+||||||||+++|+|+++|. .|.|.++|.. + +++|+++++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 8999987632 3 566666554 111
Q ss_pred cCCCCCHHHHHHHHHHhchhhHHHh-ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 039402 703 FGKEMNRERYNAVLDACSLKKDLEI-LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIY 764 (1496)
Q Consensus 703 ~g~~~~~~~~~~v~~~~~l~~d~~~-l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 764 (1496)
.+++. .+++.+.++. +| |.+|.++|+ |||||||||+||||++.+|+++
T Consensus 77 ----~~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11221 5678888888 89 999999995 9999999999999999999875
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.44 E-value=1.7e-14 Score=171.29 Aligned_cols=146 Identities=23% Similarity=0.211 Sum_probs=98.2
Q ss_pred eeEEEecCCCCCCceeeeeE-------EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCC-ccEEEEcCeeEEEccCCccC
Q 039402 622 DGNFSWDISSHNPTLKDINL-------KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI-SGTLKLCGTKAYVAQSPWIQ 693 (1496)
Q Consensus 622 ~~~~~~~~~~~~~~L~~i~l-------~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~-~G~i~~~g~~~yv~Q~~~i~ 693 (1496)
.+++.+.+. ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...
T Consensus 93 ~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~------------- 158 (356)
T 3jvv_A 93 GAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI------------- 158 (356)
T ss_dssp EEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-------------
T ss_pred EEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-------------
Confidence 445555432 3567777766 77889999999999999999999999999987 4555321
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCC
Q 039402 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773 (1496)
Q Consensus 694 ~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 773 (1496)
.|++.+..+.. .+.. . +..++... ++-.+ +|||||.++||++++|||+
T Consensus 159 ----ed~~e~~~~~~---------~~~v----~------q~~~~~~~--~~~~~----~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 159 ----EDPIEFVHESK---------KCLV----N------QREVHRDT--LGFSE----ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp ----ESSCCSCCCCS---------SSEE----E------EEEBTTTB--SCHHH----HHHHHTTSCCSEEEESCCC---
T ss_pred ----cCcHHhhhhcc---------ccce----e------eeeecccc--CCHHH----HHHHHhhhCcCEEecCCCC---
Confidence 11111111000 0000 0 11122221 22222 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeCC
Q 039402 774 DAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKDG 817 (1496)
Q Consensus 774 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 817 (1496)
|+++.+.+ ++....|+|+++++|+.+.+..+||++.|..|
T Consensus 207 d~e~~~~~----~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLETIRLA----LTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SHHHHHHH----HHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CHHHHHHH----HHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 77764433 33345699999999999988779999988654
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.43 E-value=8.9e-15 Score=170.58 Aligned_cols=150 Identities=12% Similarity=0.164 Sum_probs=80.6
Q ss_pred eeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC-CCCCccEEEEcC----------eeEEEccCC
Q 039402 622 DGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE-VPKISGTLKLCG----------TKAYVAQSP 690 (1496)
Q Consensus 622 ~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~-~~~~~G~i~~~g----------~~~yv~Q~~ 690 (1496)
|+++.|. .+.++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++| .++|++|.+
T Consensus 3 ~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 3 NLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4555663 467999999988 99999999999999999998 888888 54433 357888876
Q ss_pred ccC-CCcHHHHhccCCCCCH-HHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 039402 691 WIQ-SGKIEDNILFGKEMNR-ERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDD 768 (1496)
Q Consensus 691 ~i~-~~ti~eNI~~g~~~~~-~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDe 768 (1496)
... ..|+.|+..++...+. ++++.+.+. +.+.. .....++|||||||+.+|||+. ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 553 4589999888754321 222222222 11111 1334679999999999999985 999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHh--CCcEEEEEccCcC
Q 039402 769 PFSA-VDAHTGSHLFQEVLLGLL--SSKTVIYVTHQVE 803 (1496)
Q Consensus 769 p~sa-LD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~ 803 (1496)
||++ ||+... . +++.+. .+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~----~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-A----FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-H----HHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-H----HHHHHHhcCCEEEEEEeCCCC
Confidence 9985 999763 2 233222 2578888899874
No 201
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=7.9e-15 Score=161.25 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=91.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC-----CCCccEEEEcCeeE-----EEc
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----PKISGTLKLCGTKA-----YVA 687 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----~~~~G~i~~~g~~~-----yv~ 687 (1496)
++++|++|.|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|++...+..- .+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 67889999995 267888 889999999999999999999999999998 78888775432111 111
Q ss_pred cCCccCCC--------cHHHHh-------------cc----CCCCCHHHHHHHHHHhchhhHHHhccCCCc-ccccCCCC
Q 039402 688 QSPWIQSG--------KIEDNI-------------LF----GKEMNRERYNAVLDACSLKKDLEILSFGDQ-TVIGERGI 741 (1496)
Q Consensus 688 Q~~~i~~~--------ti~eNI-------------~~----g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~-t~ig~~g~ 741 (1496)
..|-.... ..+..+ .+ ..+.... ..++.+. +.. .+.. ..++.+..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~------~~~--~~~~~~~v~nK~D 148 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEW------AVD--SNIAVLVLLTKAD 148 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHH------HHH--TTCCEEEEEECGG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHH------HHH--cCCCeEEEEeccc
Confidence 11111000 001000 00 0011111 1111111 111 1222 23477778
Q ss_pred CCChHHHHH-HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCc
Q 039402 742 NLSGGQKQR-IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSK 793 (1496)
Q Consensus 742 ~LSGGQkqR-v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~ 793 (1496)
.+|+||||| +..||+++.+|+++++|||+||+|......+++.+.+...++.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 899999999 8999999999999999999999999999999876554443343
No 202
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.41 E-value=5.4e-14 Score=182.67 Aligned_cols=150 Identities=11% Similarity=0.040 Sum_probs=100.0
Q ss_pred CCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcC---eeEEEccCCccCC-CcHHHHhccCCC
Q 039402 632 HNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCG---TKAYVAQSPWIQS-GKIEDNILFGKE 706 (1496)
Q Consensus 632 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g---~~~yv~Q~~~i~~-~ti~eNI~~g~~ 706 (1496)
++.+++|++|+ ++|++++|+|||||||||||++|.|...+ ..|.. +.. .+++++| ++. .++.||+..
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE---EEEEEC----------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH---HHhhCCHHHHHHh---
Confidence 46799999999 99999999999999999999999986421 12210 000 1122222 111 122222211
Q ss_pred CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 039402 707 MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVL 786 (1496)
Q Consensus 707 ~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~ 786 (1496)
...++|+|+++ ++.+.....+|+++|||||++|+|+..+..+...++
T Consensus 666 --------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll 712 (800)
T 1wb9_A 666 --------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA 712 (800)
T ss_dssp ------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH
T ss_pred --------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 12346777765 444445689999999999999999988777655556
Q ss_pred HHHh--CCcEEEEEccCcCccccCCEEEEEeCCeEEEe
Q 039402 787 LGLL--SSKTVIYVTHQVEFLPAADLILVMKDGKITQA 822 (1496)
Q Consensus 787 ~~~~--~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 822 (1496)
+.+. .|.|+|++||+.+....||++..+++|++...
T Consensus 713 ~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 713 ENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5543 38999999999988777888777778877654
No 203
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.41 E-value=1e-15 Score=177.14 Aligned_cols=128 Identities=12% Similarity=0.022 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC-C---C
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE-E---S 1347 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~---~ 1347 (1496)
++..|||+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++|++++++|+.... + .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46799999999999999999999999864 2 0 1 45566669999999999999973100 0 0
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccc------cccCCCCCCchHHHHHHHH--HHHccCCCEEEEEcCCCCCCHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSK------VTENGENWSMGQRQLVCLG--RVLLKRSKILMLDEATASVDTAT 1417 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~------v~e~G~nLS~GQrQll~LA--RALLr~~~ILiLDEaTsslD~~T 1417 (1496)
+....-++.+...+.+++..++.|+||. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001111223446677788887753 4456789999999999997 666 899999999999999865
No 204
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.40 E-value=4.1e-13 Score=143.01 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEE
Q 039402 738 ERGINLSGGQKQRIQIARALY----QDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILV 813 (1496)
Q Consensus 738 ~~g~~LSGGQkqRv~LARAl~----~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 813 (1496)
.+..+||||||||++|||++. ++|+++||||||++||+.....+.+ .+....++.++|+|||+...+..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~~~~~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSKESQFIVITLRDVMMANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhccCCEEEEEEecHHHHHhCCEEEE
Confidence 445789999999999999995 5689999999999999999888865 55666667899999999888888999985
Q ss_pred E--eCCeE
Q 039402 814 M--KDGKI 819 (1496)
Q Consensus 814 l--~~G~i 819 (1496)
+ ++|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 5 56754
No 205
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.40 E-value=1.5e-13 Score=179.82 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=104.0
Q ss_pred ceEEEEeEEeEe-----CCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH
Q 039402 1244 GKIDLLDLQVRY-----APQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD 1318 (1496)
Q Consensus 1244 g~I~f~nvs~~Y-----~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1318 (1496)
+.|++++..--. ..+...|++|+||++++|+.++|+|||||||||+++.+.++.-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 467777643221 11245799999999999999999999999999999998654211
Q ss_pred HhcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc
Q 039402 1319 LRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL 1398 (1496)
Q Consensus 1319 LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1398 (1496)
.+.-+++|++..-+ ++.+++ +.+.++.+.+ ..+-+.+|+|++|+..++|+ +
T Consensus 700 -aq~g~~vpa~~~~i--~~~d~i--------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 -AQIGSYVPAEEATI--GIVDGI--------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHHTCCBSSSEEEE--ECCSEE--------------EEEC---------------------CCHHHHHHHHHHHHHH-C
T ss_pred -hhcCccccchhhhh--hHHHHH--------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-c
Confidence 11122344433111 000111 1111221111 12235689999999999999 8
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEEccCcchhcccCE
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQ-QTLRQHF--SDCTVLTIAHRITSVIDSDL 1449 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq-~~I~~~f--~~~TVI~IAHRl~ti~~~Dr 1449 (1496)
.+|++|||||||+++|+.....|. ..++... .++|+|++||.++...-+|+
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999998877765 5555432 48999999999877654543
No 206
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.40 E-value=2.6e-16 Score=173.74 Aligned_cols=131 Identities=17% Similarity=0.227 Sum_probs=97.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC----
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE---- 1345 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---- 1345 (1496)
.++|+++||+|+||||||||+++|.|+++|. | ...++|+||.+.+..+.++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 3578888888888888777764211
Q ss_pred --CCcHHHHHHHHHHcCCcHHHHhcc--CCcccccccCCCCCCchHHHHHHHH-HHHccCCCEEEEEcCC----------
Q 039402 1346 --ESTDEQIWEALDKCQLGDEVRKKE--GKLDSKVTENGENWSMGQRQLVCLG-RVLLKRSKILMLDEAT---------- 1410 (1496)
Q Consensus 1346 --~~sd~eI~~aL~~~~L~~~i~~lp--~gLdt~v~e~G~nLS~GQrQll~LA-RALLr~~~ILiLDEaT---------- 1410 (1496)
.++.+.+.+.+ ..++ +.+++++.+.|.+.|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~~~l---------~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~ 150 (208)
T 3c8u_A 80 PETFDFEGFQRLC---------HALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDV 150 (208)
T ss_dssp GGGBCHHHHHHHH---------HHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSE
T ss_pred CchhhHHHHHHHH---------HHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCE
Confidence 12233333333 2332 3478889999999999999999998 9999999988899974
Q ss_pred -CCCCHHHHHHHHHHHHHh
Q 039402 1411 -ASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1411 -sslD~~Td~~Iq~~I~~~ 1428 (1496)
..+|...+..+++.+++.
T Consensus 151 ~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 151 SIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp EEEECCCHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 335655665566655553
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.39 E-value=1.5e-13 Score=159.98 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=90.7
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCccCC-CcHHHHhcc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPWIQS-GKIEDNILF 703 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~i~~-~ti~eNI~~ 703 (1496)
.+|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++..+. .+++||+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999998763 468888776543 367777653
Q ss_pred CCCCCHHHHHHHHHHhchhhHHHhcc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 039402 704 GKEMNRERYNAVLDACSLKKDLEILS-FGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782 (1496)
Q Consensus 704 g~~~~~~~~~~v~~~~~l~~d~~~l~-~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~ 782 (1496)
+. . + + .|...+. .|.. ......++..+|||+++|||+..+|+.++| +||+.++..+.
T Consensus 180 ~~------~----~--~--~d~~llDt~G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 180 MK------A----R--G--YDLLFVDTAGRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HH------H----H--T--CSEEEECCCCCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HH------h----C--C--CCEEEecCCCCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 21 0 0 0 1111110 0100 011123567779999999999999994444 34444444444
Q ss_pred HHHHHHH-hCCcEEEEEccCcCc
Q 039402 783 QEVLLGL-LSSKTVIYVTHQVEF 804 (1496)
Q Consensus 783 ~~~~~~~-~~~~tvilvtH~~~~ 804 (1496)
+.+..-. ..+.|+|++||+-+.
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3322212 237899999998554
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.39 E-value=1.1e-13 Score=153.16 Aligned_cols=149 Identities=17% Similarity=0.088 Sum_probs=97.7
Q ss_pred ccceeeeE-EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1261 LVLQGISC-TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1261 ~vLk~iS~-~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
+.|+++.. .+++|+.++|+|++|||||||++.+.+ ++..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 35677665 799999999999999999999999999 4444556665432 122222222
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCc--HHHHhccCCcccccccCCCCCCch--HHHHHHHHHHHccC-CCEEEEEcCCCCCC
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLG--DEVRKKEGKLDSKVTENGENWSMG--QRQLVCLGRVLLKR-SKILMLDEATASVD 1414 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~--~~i~~lp~gLdt~v~e~G~nLS~G--QrQll~LARALLr~-~~ILiLDEaTsslD 1414 (1496)
.++..++. +....+ .+. ..|.+ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ---------------~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 ---------------MAETRGLNPEEALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp ---------------HHHTTTCCHHHHHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred ---------------HHHhcCCChHHHhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11111111 001111 011 12333 47899999999986 99999999999999
Q ss_pred HHHH-----H---HHHHHHHHhcC--CcEEEEEccCcc-------------hh-cccCEEEEEeCC
Q 039402 1415 TATD-----N---LIQQTLRQHFS--DCTVLTIAHRIT-------------SV-IDSDLVLLLNHG 1456 (1496)
Q Consensus 1415 ~~Td-----~---~Iq~~I~~~f~--~~TVI~IAHRl~-------------ti-~~~DrIlVL~~G 1456 (1496)
...+ + .+.+.|++..+ ++|||+++|... .+ ..||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7543 2 23334555433 799999999876 23 359999999865
No 209
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.38 E-value=7.2e-15 Score=172.82 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc--------CCCccEEEECCeeCCCCC---------------hHHHhcccEEE---c
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV--------EPAAGQILIDGIDISLIG---------------LHDLRSRLSII---P 1327 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~--------ep~~G~I~IDG~dI~~i~---------------l~~LR~~i~iI---p 1327 (1496)
+.++|+|++|||||||++.|.|+. .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999998764 45788889988 7
Q ss_pred cccc-ccccchhhccCCCCCCcHHHHHHHH-------HHcCCcHHHHh--ccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1328 QDPV-MFEGTVRSNLDPLEESTDEQIWEAL-------DKCQLGDEVRK--KEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1328 Qdp~-LF~gTIR~NLdp~~~~sd~eI~~aL-------~~~~L~~~i~~--lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
|++. .|+.++.||..... ...+.+.+ ++..+...+.. ..+..+. -.++|+||+||.+.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~-----~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ-----MNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH-----HHHCHHHHHHHHTCSEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH-----HhhchHHHHHHHhCCEEE
Confidence 9876 47889999987432 12222222 11111111100 0000011 115899999999999999
Q ss_pred ccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 039402 1398 LKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI 1441 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl 1441 (1496)
+.+|+++ ||| +.+.+.|++..++.||++++|+.
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 9999987 888 67788888877889999999964
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.38 E-value=3.9e-13 Score=155.14 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=92.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE------cCeeEEEccCCccCCCcHHHHh-ccCCCCCHHHHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL------CGTKAYVAQSPWIQSGKIEDNI-LFGKEMNRERYNA 714 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~------~g~~~yv~Q~~~i~~~ti~eNI-~~g~~~~~~~~~~ 714 (1496)
.+++|++++|+||||||||||++.+++.+. .|.+.. .+.+.|++.+... ..+.+++ .++...+..+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 378999999999999999999999998654 343322 2456676654322 1222222 1233334333333
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHH
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS--AVDAHTG---SHLFQEVLLGL 789 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s--aLD~~~~---~~i~~~~~~~~ 789 (1496)
+++.+.+. ...+.....||+||+|++ |++..+|+++++|||++ ++|.... ..+.+.+....
T Consensus 102 ~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 33333221 112456778999998875 68888999999999999 9998543 45544333222
Q ss_pred -hCCcEEEEEccCcCcc
Q 039402 790 -LSSKTVIYVTHQVEFL 805 (1496)
Q Consensus 790 -~~~~tvilvtH~~~~l 805 (1496)
..|.|||+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 2489999999998654
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=5.7e-14 Score=169.84 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=96.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc--EEEEc-------CeeEEEc
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG--TLKLC-------GTKAYVA 687 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G--~i~~~-------g~~~yv~ 687 (1496)
.+.++++++.|. .+++++|++|+| +|+|+||||||||+++|+|...+..| .+.++ ..++|++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 578888888884 467999999998 99999999999999999999875443 11111 1368888
Q ss_pred cCCccC-CCcHHHHhccCCCCCHH-HHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---
Q 039402 688 QSPWIQ-SGKIEDNILFGKEMNRE-RYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSD--- 762 (1496)
Q Consensus 688 Q~~~i~-~~ti~eNI~~g~~~~~~-~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~--- 762 (1496)
|++.++ ..||.||+.++...+.. .+..+.+ .++ ..++++++||++||||++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 987765 56999999998653321 1122211 111 1345677889999999999999
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCcc
Q 039402 763 IYLFDDPF-SAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFL 805 (1496)
Q Consensus 763 illLDep~-saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 805 (1496)
++++|||| ++||+... .+ +..+..+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~-~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDI-EF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHH-HH----HHHHTTTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHH-HH----HHHHhccCcEEEEEEcccCc
Confidence 99999999 69998753 22 33334578899999987654
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.36 E-value=3.6e-15 Score=179.02 Aligned_cols=71 Identities=24% Similarity=0.119 Sum_probs=56.2
Q ss_pred ceeeeeEEEeC--CcEEEEEecCCCcHHHHHHHHhcCCCCCc----cEEEEc----Ce-----------eEEEccCCccC
Q 039402 635 TLKDINLKVFH--GMRVAVCGTVGSGKSSLLSCILGEVPKIS----GTLKLC----GT-----------KAYVAQSPWIQ 693 (1496)
Q Consensus 635 ~L~~i~l~i~~--G~~~~ivG~~GsGKSTLl~~ilG~~~~~~----G~i~~~----g~-----------~~yv~Q~~~i~ 693 (1496)
..+.|+++|++ |++++|+||||||||||+++|+|.++|++ |++.++ |. ++|++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 887763 21 35556665555
Q ss_pred CCcHHHHhccCC
Q 039402 694 SGKIEDNILFGK 705 (1496)
Q Consensus 694 ~~ti~eNI~~g~ 705 (1496)
.+|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 666777776653
No 213
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.35 E-value=6.7e-15 Score=170.26 Aligned_cols=128 Identities=15% Similarity=0.120 Sum_probs=92.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCC----CHHHHHHHHHHhc
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEM----NRERYNAVLDACS 720 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~----~~~~~~~v~~~~~ 720 (1496)
++.+++|+|++|||||||.+.|.+.+++.... ...+.+|+|++++++.++++|+.++.+. .........+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 56799999999999999999999998763101 1234566999999999999999765210 0000001111223
Q ss_pred hhhHHHhccCCCc------ccccCCCCCCChHHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 039402 721 LKKDLEILSFGDQ------TVIGERGINLSGGQKQRIQIA--RALYQDSDIYLFDDPFSAVDAHT 777 (1496)
Q Consensus 721 l~~d~~~l~~g~~------t~ig~~g~~LSGGQkqRv~LA--RAl~~~~~illLDep~saLD~~~ 777 (1496)
+.+.++.++.|.+ ..+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 4566777777744 346677889999999999998 666 999999999999999864
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=7e-13 Score=149.14 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=91.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCC-----CccEEEECCeeCCC-CChHHHhcccEEEcccccccccchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEP-----AAGQILIDGIDISL-IGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep-----~~G~I~IDG~dI~~-i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
-+++|+.++|+|++|||||||++.|.+ +.+| .+|.+++++.+... -.+..+++++++.||+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5555 67899999876321 1233455667776654 3455
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHH--
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTA-- 1416 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~-- 1416 (1496)
+......+.++..+. +.-++.++ .+|+++++||+|+.+|..
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 432222232232222 22222222 579999999999999986
Q ss_pred -----HHHH--HHHH---HHHhc--CCcEEEEEccCcchhc--------------------ccCEEEEEeCC
Q 039402 1417 -----TDNL--IQQT---LRQHF--SDCTVLTIAHRITSVI--------------------DSDLVLLLNHG 1456 (1496)
Q Consensus 1417 -----Td~~--Iq~~---I~~~f--~~~TVI~IAHRl~ti~--------------------~~DrIlVL~~G 1456 (1496)
+++. +.+. +++.. .++|||+++|-..... .||.|++|++|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3222 3333 33322 3899999999554322 49999999976
No 215
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.34 E-value=7.5e-13 Score=152.79 Aligned_cols=151 Identities=11% Similarity=0.130 Sum_probs=97.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCC-CCCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDP-LEES 1347 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp-~~~~ 1347 (1496)
.+++|+.++|+|++|||||||++.+.+.+. .|++ +.|.+... +.++.|++.+... ..++.++.- ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998664 5665 33544321 2356666655432 112222210 0112
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC--CCCHHHH---HHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA--SVDTATD---NLIQ 1422 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs--slD~~Td---~~Iq 1422 (1496)
.+++..++++...+.+ ..+.....+|+||+|++ |+++++|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 3334444455544322 22334567899998865 78899999999999999 8997544 5666
Q ss_pred HHHHHhc--CCcEEEEEccCcchh
Q 039402 1423 QTLRQHF--SDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1423 ~~I~~~f--~~~TVI~IAHRl~ti 1444 (1496)
+.|++.. .++|||+|+|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 6666653 389999999987654
No 216
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.34 E-value=2.9e-13 Score=175.90 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=107.0
Q ss_pred ceEEEEeEEeEeCC-----CCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEEECCeeCCCCChH
Q 039402 1244 GKIDLLDLQVRYAP-----QMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1244 g~I~f~nvs~~Y~~-----~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~i~l~ 1317 (1496)
+.|++++.. ++- +...|++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 457776642 221 234689999999 99999999999999999999999997532 222 11110
Q ss_pred HHhcccEEEccccccccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1318 DLRSRLSIIPQDPVMFEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1318 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
-+.++++++| +|.. ++.+|+. .++ +.+|+|++|+.. +..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~---------------------------~~~--------stf~~e~~~~~~-il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLA---------------------------SGR--------STFMVEMTETAN-ILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHHHHH-HHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHH---------------------------hhh--------hhhhHHHHHHHH-HHH
Confidence 1234555555 3322 3333321 011 245777765443 344
Q ss_pred HccCCCEEEEEcCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEccCcchhcccCEEEEEeCCeEeEe
Q 039402 1397 LLKRSKILMLDEATASVDTATDNLI-QQTLRQHF--SDCTVLTIAHRITSVIDSDLVLLLNHGLIEEF 1461 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTsslD~~Td~~I-q~~I~~~f--~~~TVI~IAHRl~ti~~~DrIlVL~~G~IvE~ 1461 (1496)
.+.+|+++||||||+++|+.....+ .+.++... .++|+|++||..+....||++..+.+|++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5889999999999988888654443 55665543 38999999999988777888777777776543
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.34 E-value=1.3e-14 Score=184.68 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=102.9
Q ss_pred cEEEEeeEEEecCCCCCCceeee----------eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEEEEcCe---
Q 039402 617 ALDIVDGNFSWDISSHNPTLKDI----------NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGT--- 682 (1496)
Q Consensus 617 ~i~~~~~~~~~~~~~~~~~L~~i----------~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i~~~g~--- 682 (1496)
.++++++++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|...| ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46788888888521 13344433 366665 999999999999999999999988 7999988763
Q ss_pred -------------eEEEccCCccCC-CcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHH
Q 039402 683 -------------KAYVAQSPWIQS-GKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQK 748 (1496)
Q Consensus 683 -------------~~yv~Q~~~i~~-~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQk 748 (1496)
++|++|++.++. .||+|||.+.. ...+. .+..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~~~-----------------~~~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAIAG-----------------EGMGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHHHC-----------------SSSCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHhcC-----------------Cccccc---h
Confidence 478888887765 48888875421 00000 001111 2
Q ss_pred HHHHHHHHHccCCCEEEEecC------CCCCCHHHHHHHHHHHHHHHh-C--CcEEEEEccCcCccc-------------
Q 039402 749 QRIQIARALYQDSDIYLFDDP------FSAVDAHTGSHLFQEVLLGLL-S--SKTVIYVTHQVEFLP------------- 806 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep------~saLD~~~~~~i~~~~~~~~~-~--~~tvilvtH~~~~l~------------- 806 (1496)
+++.++.+...+|+++++||| |++||+.....+. +++..+. + +.+++++||+++...
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 334444445568999999999 9999999888775 4555543 2 567888999987431
Q ss_pred cCCEEEEEeCCeEEEecChHH
Q 039402 807 AADLILVMKDGKITQAGKYND 827 (1496)
Q Consensus 807 ~~d~i~~l~~G~i~~~G~~~~ 827 (1496)
....|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 135688888887777666443
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.33 E-value=6.6e-14 Score=151.77 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=89.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEEST 1348 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~s 1348 (1496)
.+++|+.++|+|++|||||||++.|.+. |..|.|.+||.++.... .-++.++++||++. ...|+++|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH----
Confidence 5789999999999999999999999998 78899999997763221 11345788888765 455778776321
Q ss_pred HHHHHHHHHHcCCcHHHHhcc--CCcccc--cccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHH
Q 039402 1349 DEQIWEALDKCQLGDEVRKKE--GKLDSK--VTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQT 1424 (1496)
Q Consensus 1349 d~eI~~aL~~~~L~~~i~~lp--~gLdt~--v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~ 1424 (1496)
.. ...+.+-...+.... .+++.. .......+|+||+|++++||++.++|+++ +|++..+.+.+.
T Consensus 76 -~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 011111100000000 011100 02233569999999999999999999876 577666656555
Q ss_pred HHH
Q 039402 1425 LRQ 1427 (1496)
Q Consensus 1425 I~~ 1427 (1496)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 543
No 219
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=7.2e-15 Score=173.94 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=119.1
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~ 1321 (1496)
|+++|++++|.. ..+|+++||++++|+.+||+|++|||||||+++|.|++.|++|+|.|.|.|+.+.. ....|.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 455667777743 35899999999999999999999999999999999999999999999999986543 234688
Q ss_pred ccEEEcccccccc----------cch---hhcc-------------C-CCCCCcHHHHHHHHHH-------------cCC
Q 039402 1322 RLSIIPQDPVMFE----------GTV---RSNL-------------D-PLEESTDEQIWEALDK-------------CQL 1361 (1496)
Q Consensus 1322 ~i~iIpQdp~LF~----------gTI---R~NL-------------d-p~~~~sd~eI~~aL~~-------------~~L 1361 (1496)
++++++|+|.+|. ||- ++.+ | |.-..++..+.+.++- -.+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 9999999998885 221 2111 0 1000111111100000 001
Q ss_pred cHHHHhccC-----CcccccccCCCCCCchHHHHHHHHHHHcc------CCCEEEEEcCCCCCCHHHHHHHHHHHHHhc
Q 039402 1362 GDEVRKKEG-----KLDSKVTENGENWSMGQRQLVCLGRVLLK------RSKILMLDEATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1362 ~~~i~~lp~-----gLdt~v~e~G~nLS~GQrQll~LARALLr------~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
.+.+.+.+. +.|. .....+|+|++|++..|++++. +|+|+. ||++|.+.-..+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl---~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADD---GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCST---TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhc---cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 111112221 1221 0113468999999999999998 688876 99999999888888887753
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.9e-13 Score=160.83 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=107.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeEEEeCCcE--EEEEecCCCcHHHHHHHHhcCCCCCccEE--------EEcCeeEEEc
Q 039402 618 LDIVDGNFSWDISSHNPTLKDINLKVFHGMR--VAVCGTVGSGKSSLLSCILGEVPKISGTL--------KLCGTKAYVA 687 (1496)
Q Consensus 618 i~~~~~~~~~~~~~~~~~L~~i~l~i~~G~~--~~ivG~~GsGKSTLl~~ilG~~~~~~G~i--------~~~g~~~yv~ 687 (1496)
+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|..- .|.. .. ..++|++
T Consensus 17 l~~~~-~~~y~---~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~-~~i~~v~ 88 (427)
T 2qag_B 17 VPLAG-HVGFD---SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQL-QSNTYDL 88 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEE-EEEEEEE
T ss_pred EEEee-EEEEC---Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceE-eeEEEEe
Confidence 44444 56664 345 9999999999999 99999999999999999999841 1211 11 1579999
Q ss_pred cCCccC-CCcHHHHhccCCCCCHH-HHHHHHHHh--chhhHHHhc-------cCCCcc-------cccCCCCCCChHHHH
Q 039402 688 QSPWIQ-SGKIEDNILFGKEMNRE-RYNAVLDAC--SLKKDLEIL-------SFGDQT-------VIGERGINLSGGQKQ 749 (1496)
Q Consensus 688 Q~~~i~-~~ti~eNI~~g~~~~~~-~~~~v~~~~--~l~~d~~~l-------~~g~~t-------~ig~~g~~LSGGQkq 749 (1496)
|++.++ +.|+.||+.||...+.. .+..+.+.. .....+... +...++ .|-..+..|+-.+
T Consensus 89 Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 89 QESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp EC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred ecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 998876 56999999999876532 111111110 011111111 111111 1223345677666
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcc
Q 039402 750 RIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL-SSKTVIYVTH 800 (1496)
Q Consensus 750 Rv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~-~~~tvilvtH 800 (1496)
+.++++|..+++|+++|+|+..|.+.....+++.+...+. .|.+++.++.
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 8999999999999999999999998877777665544343 4777877775
No 221
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.26 E-value=3.1e-12 Score=160.43 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=68.6
Q ss_pred CCCCC-ChHHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEe
Q 039402 739 RGINL-SGGQKQRIQIARALYQDS--DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMK 815 (1496)
Q Consensus 739 ~g~~L-SGGQkqRv~LARAl~~~~--~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 815 (1496)
...+| ||||||||+||||+..+| +++||||||++||+.+...+.+. +..+.+++|||+|||+++.+..||++++|+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~-l~~~~~~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-LSRLADTRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH-HHHHHHHSEEEEECCCHHHHHHSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEe
Confidence 34677 999999999999999999 99999999999999999888764 444444899999999999888899999996
Q ss_pred CC
Q 039402 816 DG 817 (1496)
Q Consensus 816 ~G 817 (1496)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.26 E-value=2.9e-13 Score=150.21 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=88.2
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCe---------eEEEccCCccCCC-cH----HHHhccC
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGT---------KAYVAQSPWIQSG-KI----EDNILFG 704 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~---------~~yv~Q~~~i~~~-ti----~eNI~~g 704 (1496)
-..++|++++|+||||||||||+++|+|.++| ..|.|.+.++ ++|++|++..|.. ++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999986 7888877552 4567766554432 22 2333321
Q ss_pred CCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 039402 705 KEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQE 784 (1496)
Q Consensus 705 ~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~ 784 (1496)
. ++.|-.+++ ++.++..++++||| ||+.....+.+.
T Consensus 91 ~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 G------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp T------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred h------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 1 111111222 23444557999999 999998887653
Q ss_pred HHHHHhCCcEEEEEccCcCccccCCEEEEEeCCeEEEecChHHHH
Q 039402 785 VLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDLI 829 (1496)
Q Consensus 785 ~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 829 (1496)
+. +++||+++||+++.+.. |+ +.+| .++.+++.
T Consensus 127 -l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 127 -MP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp -CT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred -cc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 22 68999999999988755 32 6666 56776664
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.25 E-value=2.2e-14 Score=156.97 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=95.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC-------------CCccEEEEcCee-E---------EEccCCccCCCcHHHH
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP-------------KISGTLKLCGTK-A---------YVAQSPWIQSGKIEDN 700 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~-------------~~~G~i~~~g~~-~---------yv~Q~~~i~~~ti~eN 700 (1496)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.. . .++|+++++++++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999876 67776 35531 1 1256778888899999
Q ss_pred hccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHH
Q 039402 701 ILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR-ALYQDSDIYLFDDPFSAVDAHTGS 779 (1496)
Q Consensus 701 I~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR-Al~~~~~illLDep~saLD~~~~~ 779 (1496)
+ +|. ..+..+++++..... .++..+.|..+.... ++ .|| +++.+|++.+|||+++++|.++.+
T Consensus 80 ~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 80 L-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp E-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred c-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 8 664 345555665531110 001112233332211 12 567 788999999999999999999988
Q ss_pred HHHHHHHHHHhCCcEEEEEccCcCccccCCEEEEEeC
Q 039402 780 HLFQEVLLGLLSSKTVIYVTHQVEFLPAADLILVMKD 816 (1496)
Q Consensus 780 ~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 816 (1496)
.|.+.+ ....++ +.++| +. ..+|+|+++++
T Consensus 144 ~i~~~l-~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRL-AAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHH-HHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHH-HHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 876543 322222 23456 22 66999988864
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.24 E-value=2.1e-11 Score=134.78 Aligned_cols=149 Identities=19% Similarity=0.106 Sum_probs=94.0
Q ss_pred CceeeeeE-EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHH
Q 039402 634 PTLKDINL-KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERY 712 (1496)
Q Consensus 634 ~~L~~i~l-~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~ 712 (1496)
+.|+++.. .+++|++++|+||+|||||||++.+++ ++ . +.+.|+..+..+ +.++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~------~~v~~i~~~~~~---------------~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-G------KKVAYVDTEGGF---------------SPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-C------SEEEEEESSCCC---------------CHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-C------CcEEEEECCCCC---------------CHHHH
Confidence 45666554 689999999999999999999999999 22 2 234555544311 22222
Q ss_pred HHHHHHhchhh--HHHhccCCCcccccCCCCCCChH--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------H
Q 039402 713 NAVLDACSLKK--DLEILSFGDQTVIGERGINLSGG--QKQRIQIARALYQD-SDIYLFDDPFSAVDAHTG--------S 779 (1496)
Q Consensus 713 ~~v~~~~~l~~--d~~~l~~g~~t~ig~~g~~LSGG--QkqRv~LARAl~~~-~~illLDep~saLD~~~~--------~ 779 (1496)
.+..+..++.. ..+.+. ..+++++ |+|+++.+|++..+ |+++++|||++.+|+... .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~ 132 (220)
T 2cvh_A 63 VQMAETRGLNPEEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELS 132 (220)
T ss_dssp HHHHHTTTCCHHHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHH
T ss_pred HHHHHhcCCChHHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHH
Confidence 22222222110 011110 1233444 46789999999986 999999999999997432 2
Q ss_pred HHHHHHHHHHh--CCcEEEEEccCcCc-------------cc-cCCEEEEEeCC
Q 039402 780 HLFQEVLLGLL--SSKTVIYVTHQVEF-------------LP-AADLILVMKDG 817 (1496)
Q Consensus 780 ~i~~~~~~~~~--~~~tvilvtH~~~~-------------l~-~~d~i~~l~~G 817 (1496)
++.+. +..+. .+.|+|+++|.... +. .||.+++|++.
T Consensus 133 ~~~~~-L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 133 RQLQV-LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHH-HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHH-HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 23222 23322 38899999998752 33 49999999754
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.23 E-value=5.1e-12 Score=153.62 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=99.8
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC----hHH--HhcccEEEccccccc-ccc
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG----LHD--LRSRLSIIPQDPVMF-EGT 1336 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~--LR~~i~iIpQdp~LF-~gT 1336 (1496)
+++||++++|+.++|||+||||||||++.|.|++.|++|+|.++|.|+.... +.. .|.++++++|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999998886542 223 477899999998755 458
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCC------CCCchHHHHHHHHHHHccC-C-CEEEEEc
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGE------NWSMGQRQLVCLGRVLLKR-S-KILMLDE 1408 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~------nLS~GQrQll~LARALLr~-~-~ILiLDE 1408 (1496)
+++|+... + . .+.|..+-+... ++-.--+|++.++|++... | .+|+..+
T Consensus 364 V~e~l~~a-----------~-~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 364 IFDAIQAA-----------K-A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHH-----------H-H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHH-----------H-h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 88887421 1 1 112221111111 1111224788888877543 5 3554445
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1409 ATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1409 aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
||.+.|... . .+.+++. .+.|.+++||
T Consensus 421 attGq~al~--~-ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVS--Q-AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHH--H-HHHHHHH-TCCSEEEEEC
T ss_pred CcccHHHHH--H-HHHHHhh-cCCCEEEEEc
Confidence 887754431 1 1222322 3679999999
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=3.2e-14 Score=176.61 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=119.6
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc--ch
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG--TV 1337 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g--TI 1337 (1496)
+.+++++++.+++|+.++|+|+|||||||++++|.|+++|++|.|+|+|.+--.++. +..+++++|++. ..+ |.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 357899999999999999999999999999999999999999999999876333221 445677777765 332 54
Q ss_pred hhcc------CC----CCCCcHHHHHHHHHHcCC-------------cHHHHhc---cCCcccccc-------cCCCCCC
Q 039402 1338 RSNL------DP----LEESTDEQIWEALDKCQL-------------GDEVRKK---EGKLDSKVT-------ENGENWS 1384 (1496)
Q Consensus 1338 R~NL------dp----~~~~sd~eI~~aL~~~~L-------------~~~i~~l---p~gLdt~v~-------e~G~nLS 1384 (1496)
++++ +| .++.++.|.+.+++.+.- .+.+..+ +.++...+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 4443 23 256777777777666531 1222222 222222111 1234579
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCcEEEE--EccCcchhcc-cC
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF-SDCTVLT--IAHRITSVID-SD 1448 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f-~~~TVI~--IAHRl~ti~~-~D 1448 (1496)
+|||||.|+|. + | |+++|+++...+.+.|.+.- .++|++. ++|+++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988751 1 7 99999988776666665543 3689885 8999998864 54
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=7.8e-12 Score=149.04 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=82.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-ccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR-IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r-l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~ 1353 (1496)
.+.|+|++|+||||++++|.+ ++.|..|+|.++|.++..... -+..+++++|++++.-.. -+ .+....+++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~ 110 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SD-MGNNDRIVIQ 110 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hh-cCCcchHHHH
Confidence 499999999999999999999 899999999999988764332 267899999998753110 01 0111222344
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcE
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCT 1433 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~T 1433 (1496)
+.++.+... .+++..+ .+|+ +..+++|+|+|||++ +|.++.+.+.+++++.-++++
T Consensus 111 ~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 111 ELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 444332110 1122111 4565 778999999999999 999999999999998777899
Q ss_pred EEEEccCcchhc
Q 039402 1434 VLTIAHRITSVI 1445 (1496)
Q Consensus 1434 VI~IAHRl~ti~ 1445 (1496)
+|+++|+++.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 999999986553
No 228
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.20 E-value=2.5e-14 Score=155.01 Aligned_cols=166 Identities=17% Similarity=0.021 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccc-ccchhhccCCCCCCcHHH
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMF-EGTVRSNLDPLEESTDEQ 1351 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF-~gTIR~NLdp~~~~sd~e 1351 (1496)
|+.++|+|++||||||+++.|.+ |.+|.+.+||.++... ...+++||++..+ ..|+++|+.. .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~-------~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD-------L 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH-------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH-------H
Confidence 68899999999999999999987 6789999998665321 2467778876433 3366666531 0
Q ss_pred HHHHHHHcCCcHHHHhccCCccccccc----CCCCC--CchHHHHHHHHH------HHccCCCEEEEEcCCCCCCHHHHH
Q 039402 1352 IWEALDKCQLGDEVRKKEGKLDSKVTE----NGENW--SMGQRQLVCLGR------VLLKRSKILMLDEATASVDTATDN 1419 (1496)
Q Consensus 1352 I~~aL~~~~L~~~i~~lp~gLdt~v~e----~G~nL--S~GQrQll~LAR------ALLr~~~ILiLDEaTsslD~~Td~ 1419 (1496)
....++ .+. +.+ +|...+. .-..+ |+|++|++.++. +++++++...+|| ++|+....
T Consensus 66 ~~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 66 TVNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp HHHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred HHHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 111111 110 000 1110000 00123 778888877777 8888888878884 78987766
Q ss_pred HHHHHHHHhc-CCcEEEEEccC-cchhcc-cCEEEEEeCCeEeEecChhhHh
Q 039402 1420 LIQQTLRQHF-SDCTVLTIAHR-ITSVID-SDLVLLLNHGLIEEFDNPANLL 1468 (1496)
Q Consensus 1420 ~Iq~~I~~~f-~~~TVI~IAHR-l~ti~~-~DrIlVL~~G~IvE~g~p~~Ll 1468 (1496)
. .+.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+|+-|-
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 6 66666653 35799999999 999877 99999 999999999988763
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=1e-13 Score=152.88 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=84.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhcc----CC--CCCHHHHHHHH
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILF----GK--EMNRERYNAVL 716 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~----g~--~~~~~~~~~v~ 716 (1496)
.++|++++|+||||||||||+++|.|.++|. | ...++++|+...++.+..+|+.. +. .++.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQ--- 89 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHH---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHH---
Confidence 4789999999999999999999999999875 4 24678888888777777777631 11 12333222
Q ss_pred HHhchhhHHHhccCC--CcccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEecCC
Q 039402 717 DACSLKKDLEILSFG--DQTVIGERGINLSGGQKQRIQIA-RALYQDSDIYLFDDPF 770 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g--~~t~ig~~g~~LSGGQkqRv~LA-RAl~~~~~illLDep~ 770 (1496)
+.+..++.| ..+.+.+++..+||||+||+++| |+++.++.++++|||.
T Consensus 90 ------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 90 ------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp ------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 233333333 34567888999999999999998 8888888888888874
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.18 E-value=3.2e-13 Score=142.01 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=71.3
Q ss_pred EeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1249 LDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1249 ~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
+|++++|.. ..+++++||++++||.+||+|++|||||||+++|.|++ |++|+|.++|.++... ...+ + ++||
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 455666643 35899999999999999999999999999999999999 9999999999888531 1122 2 7999
Q ss_pred cccccccchhhccC
Q 039402 1329 DPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1329 dp~LF~gTIR~NLd 1342 (1496)
++.+|.-|+++|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.17 E-value=6.4e-13 Score=143.97 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=78.1
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------eEEEccCCccCCCcHHHHhccCCCCCHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------KAYVAQSPWIQSGKIEDNILFGKEMNRE 710 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------~~yv~Q~~~i~~~ti~eNI~~g~~~~~~ 710 (1496)
.+++|++++|+||||||||||+++|+|. +..|.|.++|. ++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 67899998763 244555433 2346667664421
Q ss_pred HHHHHHHHhchhhHHHhcc--CCCcc--cccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 711 RYNAVLDACSLKKDLEILS--FGDQT--VIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~--~g~~t--~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
......+-..-++.+. .+... ..+.....+|+||+||+++||++.++|+++ +|+...+.+++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 0000000000000000 00000 013345689999999999999999999876 57776665554
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.15 E-value=7.4e-11 Score=141.72 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCchHHHHH------HHHHHHccC-CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhcccCEEEEE
Q 039402 1381 ENWSMGQRQLV------CLGRVLLKR-SKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVIDSDLVLLL 1453 (1496)
Q Consensus 1381 ~nLS~GQrQll------~LARALLr~-~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~~~DrIlVL 1453 (1496)
.++||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|++..+++|||+|||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999987 678999999 99999999999999999999999999865567999999998865669999999
Q ss_pred eC
Q 039402 1454 NH 1455 (1496)
Q Consensus 1454 ~~ 1455 (1496)
++
T Consensus 359 ~k 360 (371)
T 3auy_A 359 KK 360 (371)
T ss_dssp EE
T ss_pred Ee
Confidence 83
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.15 E-value=3e-11 Score=141.90 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=108.5
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH----HHhcccE--EEccccccccc-chhhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH----DLRSRLS--IIPQDPVMFEG-TVRSNL 1341 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~----~LR~~i~--iIpQdp~LF~g-TIR~NL 1341 (1496)
..++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+.. .++++++ +++|++.++.. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999887643 3455544 89999877754 788887
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHH
Q 039402 1342 DPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLI 1421 (1496)
Q Consensus 1342 dp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~I 1421 (1496)
.. +.+. +. +.+ -+|+. |-. ..-..=-+++-.++|++..++++++||.+|. .|.. +.+
T Consensus 205 ~~-----------~~~~-~~-d~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~--~~~ 261 (328)
T 3e70_C 205 QH-----------AKAR-GI-DVV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV--EQA 261 (328)
T ss_dssp HH-----------HHHH-TC-SEE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH--HHH
T ss_pred HH-----------HHhc-cc-hhh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH--HHH
Confidence 42 1110 10 000 02221 000 0011123456679999999999999996665 2221 111
Q ss_pred HHHHHHhcCCcEEEEEccCcchh----------cccCEEEEEeCCeEe
Q 039402 1422 QQTLRQHFSDCTVLTIAHRITSV----------IDSDLVLLLNHGLIE 1459 (1496)
Q Consensus 1422 q~~I~~~f~~~TVI~IAHRl~ti----------~~~DrIlVL~~G~Iv 1459 (1496)
+.+++. .+.|+|++||--.+- ...-.|..+..|+-+
T Consensus 262 -~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 262 -RQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -HHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 222222 378999999943221 113468888888765
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.14 E-value=4.3e-11 Score=144.08 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=94.0
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHH--HhcccCCCc-----cEEEECCeeC-CCCChHHHhcccEEEcccccccccchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQT--LFRIVEPAA-----GQILIDGIDI-SLIGLHDLRSRLSIIPQDPVMFEGTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~--L~rl~ep~~-----G~I~IDG~dI-~~i~l~~LR~~i~iIpQdp~LF~gTIR~N 1340 (1496)
-|++|+.++|+|++|||||||++. +.+..+++. +.|+||+.+. ....+..+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 456666544 4899999763 22223445566777665 45566
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHHHH
Q 039402 1341 LDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTATD 1418 (1496)
Q Consensus 1341 Ldp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~Td 1418 (1496)
+.....++-++. .+++.-++.++ .+|+++|+||+|+.+|.+..
T Consensus 247 i~~~~~~~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 543322222222 22222233332 46999999999999997654
Q ss_pred ------------HHHHHHHHHhc--CCcEEEEEccCcch-------------------hcc-cCEEEEEeCCe
Q 039402 1419 ------------NLIQQTLRQHF--SDCTVLTIAHRITS-------------------VID-SDLVLLLNHGL 1457 (1496)
Q Consensus 1419 ------------~~Iq~~I~~~f--~~~TVI~IAHRl~t-------------------i~~-~DrIlVL~~G~ 1457 (1496)
..+.+.|++.. .++|||+|+|-..+ +.+ +|.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 34455555443 37999999998322 233 89999999874
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.13 E-value=1.3e-11 Score=145.65 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=78.3
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC-CCccEEEEC-CeeCCCCChHHHhcccEEEccccccccc-chh
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE-PAAGQILID-GIDISLIGLHDLRSRLSIIPQDPVMFEG-TVR 1338 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e-p~~G~I~ID-G~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR 1338 (1496)
-++++++. .+|+.++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+.+++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46677764 4799999999999999999999999999 999999997 76643 2356789999999988876 899
Q ss_pred hccCCCCCCcHHHHHH----HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1339 SNLDPLEESTDEQIWE----ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1339 ~NLdp~~~~sd~eI~~----aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
++-. ...+.+++.+ +++.+++.++ ....-.++| ||+||++||+++
T Consensus 280 e~~l--~~l~~~e~~~~~~e~l~~~gl~~f-----------~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL--WHLEPEQITQGFVEFHDYLGHCKY-----------RDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC--CCCCHHHHHHTSGGGGGGTTCSSS-----------TTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh--cCCCHHHHHHHHHHHHHHcCCchh-----------cCCCcccCC-HHHHHHHHHhcC
Confidence 9732 2344444432 3333333222 222345789 999999999985
No 236
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.12 E-value=2.7e-13 Score=164.06 Aligned_cols=141 Identities=19% Similarity=0.116 Sum_probs=97.5
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC----ChHHHhc
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI----GLHDLRS 1321 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1321 (1496)
++++|+.+.|.. ..+|+++ + .++|+.++|+|+|||||||++++|.+++.|++|+|.++|.++... ....++.
T Consensus 144 ~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 344555554421 2367777 5 389999999999999999999999999999999999999887421 1223455
Q ss_pred ccEEEc---------cccccc--c-----cchhhccCCC----------CCCcHHHHHHHHHHcCCcHHHHhccCCcccc
Q 039402 1322 RLSIIP---------QDPVMF--E-----GTVRSNLDPL----------EESTDEQIWEALDKCQLGDEVRKKEGKLDSK 1375 (1496)
Q Consensus 1322 ~i~iIp---------Qdp~LF--~-----gTIR~NLdp~----------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~ 1375 (1496)
++++.+ |||.++ . -|+++|+... ...+..+..+.|...++.+..
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---------- 289 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---------- 289 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH----------
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH----------
Confidence 565544 888653 2 2677776421 111223455566666665431
Q ss_pred cccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1376 VTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1376 v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
...+|||||+|| |||+++.+|++..
T Consensus 290 ---~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ---ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ---HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ---HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 124689999999 9999999999875
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.11 E-value=9e-11 Score=131.82 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=79.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhc--CCCC-----CccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILG--EVPK-----ISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~-----~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
-+++|++++|+||+|||||||++.|++ ..++ ..|.+++++... ++.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------------~~~~~~~~ 77 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------------FRPERLLA 77 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------------CCHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------------cCHHHHHH
Confidence 479999999999999999999999999 4554 445555544210 11122222
Q ss_pred HHHHhchhhH--HHhccCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEecCCCCCCHH-------H-----
Q 039402 715 VLDACSLKKD--LEILSFGDQTVIGERGINLSGGQKQR-IQIARALY--QDSDIYLFDDPFSAVDAH-------T----- 777 (1496)
Q Consensus 715 v~~~~~l~~d--~~~l~~g~~t~ig~~g~~LSGGQkqR-v~LARAl~--~~~~illLDep~saLD~~-------~----- 777 (1496)
..+..+...+ ++.+. + ....++.+... +.-++++. .+|+++++|||++.+|+. .
T Consensus 78 ~~~~~g~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~ 148 (243)
T 1n0w_A 78 VAERYGLSGSDVLDNVA------Y---ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 148 (243)
T ss_dssp HHHHTTCCHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHH
T ss_pred HHHHcCCCHHHHhhCeE------E---EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHH
Confidence 2222221110 01110 0 01234444332 33233333 589999999999999985 3
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccCcCc-------------------cc-cCCEEEEEeCC
Q 039402 778 GSHLFQEVLLGLL-SSKTVIYVTHQVEF-------------------LP-AADLILVMKDG 817 (1496)
Q Consensus 778 ~~~i~~~~~~~~~-~~~tvilvtH~~~~-------------------l~-~~d~i~~l~~G 817 (1496)
..+++..+..... .+.|||+++|.... +. .||.+++|++|
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 1223333322222 38999999996542 22 48999999865
No 238
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.11 E-value=4.7e-12 Score=151.26 Aligned_cols=199 Identities=13% Similarity=0.028 Sum_probs=123.1
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc---ccCCCCCCCCccE---------
Q 039402 551 VPLESGKMLSAIATFRLLQVPIYNLPDVISMIIQTKVSLQRIASFFCLDDLQPDL---VEKQPSGSSETAL--------- 618 (1496)
Q Consensus 551 ~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~---~~~~~~~~~~~~i--------- 618 (1496)
+.++.+.+..++.++..+..| .+......+..+..+..|++.++ .++.+... ..+.+. ...+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~~---~~~itl~~l~~~g 136 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKPS---FTRRTLEDYAQQG 136 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECCC---CCCCCHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEecC---CCCCCHHHHHhcC
Confidence 468888887777666554444 12111112222233455766665 22111100 000010 1123
Q ss_pred EEEeeEEE---ecCCCCCCce---------eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-----
Q 039402 619 DIVDGNFS---WDISSHNPTL---------KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG----- 681 (1496)
Q Consensus 619 ~~~~~~~~---~~~~~~~~~L---------~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g----- 681 (1496)
++++++|+ |+.. ++++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC
Confidence 56677776 5311 12344 999999999999999999999999999999999999999999976
Q ss_pred ------eeEEEc-cCCcc---CCCcHHHHhccCCCCCHHHH-HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHH
Q 039402 682 ------TKAYVA-QSPWI---QSGKIEDNILFGKEMNRERY-NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQR 750 (1496)
Q Consensus 682 ------~~~yv~-Q~~~i---~~~ti~eNI~~g~~~~~~~~-~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqR 750 (1496)
.++|++ |++.. +..|+++||..+...+.+.. ...++.....+.++.++.|..|.+++-+.+-..+..+|
T Consensus 216 ~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp CTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 258999 88775 67899999988654322110 00001112334577788899998898888889999999
Q ss_pred HHHHHH
Q 039402 751 IQIARA 756 (1496)
Q Consensus 751 v~LARA 756 (1496)
+.....
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987753
No 239
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.09 E-value=9.2e-14 Score=150.59 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=95.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------eEEEccCCcc-CCCcHHHHhccCCCCCHHHHHHHHH
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------KAYVAQSPWI-QSGKIEDNILFGKEMNRERYNAVLD 717 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------~~yv~Q~~~i-~~~ti~eNI~~g~~~~~~~~~~v~~ 717 (1496)
|++++|+||||||||||++.|++ +.+|.+.++|. .++++|.+.. .+.++++|+.+. .+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-----------TV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-----------HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-----------HH
Confidence 78999999999999999999997 67888888763 2344443311 122444444321 00
Q ss_pred HhchhhHHHhccCCCcccc----c----CCCCCC--ChHHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHH
Q 039402 718 ACSLKKDLEILSFGDQTVI----G----ERGINL--SGGQKQRIQIAR------ALYQDSDIYLFDDPFSAVDAHTGSHL 781 (1496)
Q Consensus 718 ~~~l~~d~~~l~~g~~t~i----g----~~g~~L--SGGQkqRv~LAR------Al~~~~~illLDep~saLD~~~~~~i 781 (1496)
.. . ..+....+ + +...++ |+||+||+.++. +++.+++...+|+ ++|+.....
T Consensus 68 ~~-----~---~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~- 135 (189)
T 2bdt_A 68 NF-----L---LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL- 135 (189)
T ss_dssp HH-----H---HTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred HH-----H---hcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence 00 0 00111111 0 111234 888888888888 8888888887883 789987776
Q ss_pred HHHHHHHHhCCcEEEEEccC-cCcccc-CCEEEEEeCCeEEEecChHHH
Q 039402 782 FQEVLLGLLSSKTVIYVTHQ-VEFLPA-ADLILVMKDGKITQAGKYNDL 828 (1496)
Q Consensus 782 ~~~~~~~~~~~~tvilvtH~-~~~l~~-~d~i~~l~~G~i~~~G~~~~l 828 (1496)
++........+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 136 ~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 55433322346899999999 888876 99998 99999999887544
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.07 E-value=1.7e-10 Score=138.44 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=64.2
Q ss_pred CCCCChHHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCccccCCEEE
Q 039402 740 GINLSGGQKQRI------QIARALYQD-SDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEFLPAADLIL 812 (1496)
Q Consensus 740 g~~LSGGQkqRv------~LARAl~~~-~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 812 (1496)
..+||||||||+ ++|||+..+ |+++||||||++||+.....+.+. +....++++||++||+.+....||+++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~~~~vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKSIPQMIIITHHRELEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCSCSEEEEEESCGGGGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhccCCeEEEEEChHHHHhhCCEEE
Confidence 357999999988 567999999 999999999999999999888754 444445679999999998656699999
Q ss_pred EEe
Q 039402 813 VMK 815 (1496)
Q Consensus 813 ~l~ 815 (1496)
+|+
T Consensus 357 ~l~ 359 (371)
T 3auy_A 357 NVK 359 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=1.1e-10 Score=121.41 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=70.9
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
+|+++ +|+.++|+|++|+|||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 677766543211
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDN 1419 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~ 1419 (1496)
+++.++++|+||||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2367899999999998 6655577
Q ss_pred HHHHHHHHhc-CCcE-EEEEccCc
Q 039402 1420 LIQQTLRQHF-SDCT-VLTIAHRI 1441 (1496)
Q Consensus 1420 ~Iq~~I~~~f-~~~T-VI~IAHRl 1441 (1496)
.+.+.+++.. +++| +|+++|+.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHcCCcEEEEECCCC
Confidence 7888887654 3577 77777754
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.04 E-value=4.7e-12 Score=143.30 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---cccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCC----
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDP---- 1343 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp---- 1343 (1496)
++++++|+|++|||||||+++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++.. |+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 2345566677887766554 77777632
Q ss_pred -------CCCC--cHHHHHHHHHH-cCCcHHHHhcc---CC-cccccccCCCCCCchHHHHHHHHHHH-ccCCCEEEEE-
Q 039402 1344 -------LEES--TDEQIWEALDK-CQLGDEVRKKE---GK-LDSKVTENGENWSMGQRQLVCLGRVL-LKRSKILMLD- 1407 (1496)
Q Consensus 1344 -------~~~~--sd~eI~~aL~~-~~L~~~i~~lp---~g-Ldt~v~e~G~nLS~GQrQll~LARAL-Lr~~~ILiLD- 1407 (1496)
...+ +.++.. .+.. .... .+--+. +. ++-........+|| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~-~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAE-ALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCCCSHHHHH-HHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCCCCHHHHH-HHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 0011 222221 2211 1110 000000 00 00001122345787 44 788 9999999999
Q ss_pred ---cCCCCCCHHHHHHHHHHHHHhc
Q 039402 1408 ---EATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1408 ---EaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
|||+++|..+.+.+++.+++..
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999988753
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.03 E-value=9.3e-12 Score=146.27 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC--------CCCccEEEEcCee----------------------------EEE---
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV--------PKISGTLKLCGTK----------------------------AYV--- 686 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~--------~~~~G~i~~~g~~----------------------------~yv--- 686 (1496)
=++++|+|+||||||||++.|+|.. .++.|+|.++|.. +++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999997 7899999887632 234
Q ss_pred ccCCcc-CCCcHHHHhccCCCCCH-HHH---HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 039402 687 AQSPWI-QSGKIEDNILFGKEMNR-ERY---NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS 761 (1496)
Q Consensus 687 ~Q~~~i-~~~ti~eNI~~g~~~~~-~~~---~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 761 (1496)
+|++.+ +..++.||+.++.+..- ..+ ...-+...+...+....... .-+...+||||||||+..+++++.+|
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~---~~~~~~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH---ADEQMNQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT---HHHHHHHCHHHHHHHHTCSEEEEECT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH---HHHHHhhchHHHHHHHhCCEEEEECc
Confidence 465543 46688888877653210 011 01111111111111111000 00111269999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcC
Q 039402 762 DIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 762 ~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 803 (1496)
|++ ||| ..+. +.++.+..+.|++++||+..
T Consensus 161 dl~--de~---------~~l~-~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 161 DVA--GEA---------EKLH-ERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTC--SCT---------HHHH-HHHHHHCSSSCEEECCSSCC
T ss_pred ccC--CHH---------HHHH-HHHHHhCCCCeEEEecccCC
Confidence 987 888 2333 33444456899999999743
No 244
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.01 E-value=2e-11 Score=128.32 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee--------EEEccCCccCCCcHHHHhc-c
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------AYVAQSPWIQSGKIEDNIL-F 703 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~--------~yv~Q~~~i~~~ti~eNI~-~ 703 (1496)
+.+++++||++++|++++|+||||||||||+++|+|.+ |++|+|.++|.. .|++|++.++..|+.||+. +
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~~ 98 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFM 98 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHHS
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccccCCcHHHHHHc
Confidence 46899999999999999999999999999999999999 999999988731 2689998888779999984 4
Q ss_pred C
Q 039402 704 G 704 (1496)
Q Consensus 704 g 704 (1496)
|
T Consensus 99 g 99 (158)
T 1htw_A 99 G 99 (158)
T ss_dssp T
T ss_pred C
Confidence 5
No 245
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.00 E-value=1.9e-10 Score=139.08 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=94.0
Q ss_pred eeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC-----------CCCccEEEEcC-eeEEEccCCccCCCcHHHHhcc
Q 039402 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV-----------PKISGTLKLCG-TKAYVAQSPWIQSGKIEDNILF 703 (1496)
Q Consensus 636 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~-----------~~~~G~i~~~g-~~~yv~Q~~~i~~~ti~eNI~~ 703 (1496)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|..|.|.+++ ..-.+.+.|-+..+ ..++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~-- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGK-- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSC--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhh--
Confidence 47999999999999999999999999999999983 34455555544 33344454443321 11111
Q ss_pred CCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 704 GKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 704 g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.+... +.+.++.|.. -+..+.. + .+...+||+||+||+++||++..+|.++++ +.+|.... ..++
T Consensus 224 --~L~~~-fl~~~era~~--lL~vvDl---s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 224 --GLGLE-FLRHIARTRV--LLYVLDA---A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp --CSCHH-HHHHHTSSSE--EEEEEET---T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred --hhhHH-HHHHHHHHHh--hhEEeCC---c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 12222 2122221211 1111111 1 233457999999999999999999999999 99998765 4444
Q ss_pred HHHHHHh-CCcEEEEEccC
Q 039402 784 EVLLGLL-SSKTVIYVTHQ 801 (1496)
Q Consensus 784 ~~~~~~~-~~~tvilvtH~ 801 (1496)
.+...+. .+.+++.+|..
T Consensus 289 ~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 289 ALADALAREGLAVLPVSAL 307 (416)
T ss_dssp HHHHHHHTTTSCEEECCTT
T ss_pred HHHHHHHhcCCeEEEEECC
Confidence 4444333 36677777654
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.97 E-value=2.4e-10 Score=134.92 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CCccEEEEc-C---------eeEEEccCCccCCC-cHHHHh
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KISGTLKLC-G---------TKAYVAQSPWIQSG-KIEDNI 701 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~~G~i~~~-g---------~~~yv~Q~~~i~~~-ti~eNI 701 (1496)
.-++++++. .+|++++|+||||||||||+++|+|..+ +.+|+|.++ | .++|++|+++++.. +++++-
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 346777764 4899999999999999999999999999 999999876 4 46999999987654 899865
Q ss_pred ccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHH
Q 039402 702 LFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 757 (1496)
Q Consensus 702 ~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl 757 (1496)
+.+ .+++...+ ...+.++.+ |.....+....+|| ||+||++||+++
T Consensus 283 l~~--l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWH--LEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCC--CCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcC--CCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 433 33332221 111222222 23333456778999 999999999875
No 247
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.97 E-value=1.6e-11 Score=138.93 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=84.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHHh---cCCCCCccEEEEcCe---------eEEEccCCccC-CCcHHHHhcc--------
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCIL---GEVPKISGTLKLCGT---------KAYVAQSPWIQ-SGKIEDNILF-------- 703 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~il---G~~~~~~G~i~~~g~---------~~yv~Q~~~i~-~~ti~eNI~~-------- 703 (1496)
++++++|+||||||||||+++|+ |...++.|++..+|. +.+++|++.+. ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 999999998877642 23455665544 3477888753
Q ss_pred -----CCCCCHHHHHHHHHHhchhhHHH-hccCC----CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----c
Q 039402 704 -----GKEMNRERYNAVLDACSLKKDLE-ILSFG----DQTVIGERGINLSGGQKQRIQIARAL-YQDSDIYLFD----D 768 (1496)
Q Consensus 704 -----g~~~~~~~~~~v~~~~~l~~d~~-~l~~g----~~t~ig~~g~~LSGGQkqRv~LARAl-~~~~~illLD----e 768 (1496)
|.+...++.+...+... .++- .+... .....+++..+||| |+ ||+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~--~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICE--VDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCC--CCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCHHHHHHHHhhcC--CCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 11222211111110000 0000 00000 01112455678999 66 888 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHH
Q 039402 769 PFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 769 p~saLD~~~~~~i~~~~ 785 (1496)
||+++|+.+...+.+.+
T Consensus 177 P~~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARL 193 (246)
T ss_dssp BCBCCGGGSHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHH
Confidence 99999999877765443
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=8.1e-10 Score=118.51 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=77.3
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCC
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEE 1346 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~ 1346 (1496)
+|++++|+.++|+|++|+|||||++++.+.+.|.+|...+ +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~--------------------- 72 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F--------------------- 72 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------------------
Confidence 5678899999999999999999999999998776663110 0
Q ss_pred CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHHHH
Q 039402 1347 STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQTL 1425 (1496)
Q Consensus 1347 ~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~~I 1425 (1496)
.+-.++.+.+... .. .+ . .. -....+.+|++|+||||++ ++|+...+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~-----~~---~~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 73 FDTKDLIFRLKHL-----MD---EG--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp EEHHHHHHHHHHH-----HH---HT--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHH-----hc---Cc--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 1112222211110 00 00 0 00 0112245899999999996 89999999999999
Q ss_pred HHhc-CCcEEEEEccCcch
Q 039402 1426 RQHF-SDCTVLTIAHRITS 1443 (1496)
Q Consensus 1426 ~~~f-~~~TVI~IAHRl~t 1443 (1496)
++.. .++|+|++||+...
T Consensus 127 ~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHTTCEEEEECCCCSC
T ss_pred HHHHHcCCCEEEEcCCChh
Confidence 8765 68999999998754
No 249
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.95 E-value=1.3e-10 Score=140.50 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=94.7
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhcc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNL 1341 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NL 1341 (1496)
--++++|+++.|++|||||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|++. ..-++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 4589999999999999999999999999999999843 4555555443 345777877651 111222222
Q ss_pred CCC------CCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCH
Q 039402 1342 DPL------EESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1342 dp~------~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~ 1415 (1496)
-.. ..... +..+.++++.. .+ .-+|.. .+.-.++|+||+||..+||+|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~-~fl~~~era~~--lL----~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGL-EFLRHIARTRV--LL----YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCH-HHHHHHTSSSE--EE----EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhH-HHHHHHHHHHh--hh----EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 111 01111 11222222221 11 011111 122246899999999999999999999999 89998
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEcc
Q 039402 1416 ATDNLIQQTLRQHF--SDCTVLTIAH 1439 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~f--~~~TVI~IAH 1439 (1496)
.....+.+ +++.. .+++++.|+.
T Consensus 282 ~~~~~~~~-l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKA-LADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHH-HHHHHHTTTSCEEECCT
T ss_pred hhHHHHHH-HHHHHHhcCCeEEEEEC
Confidence 76533333 33332 3567776653
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=6.1e-10 Score=119.43 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=72.4
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
++++++|+.++|+||+|+|||||+++|+|++.+.+|.. +.|+ +..+.+ .....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~~---------~~~~~~-----------~~~~~-- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYFF---------DTKDLI-----------FRLKH-- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCEE---------EHHHHH-----------HHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEEE---------EHHHHH-----------HHHHH--
Confidence 46678899999999999999999999999987766631 1121 111111 11100
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHH-hCCcEEEE
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVLLGL-LSSKTVIY 797 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~~~~-~~~~tvil 797 (1496)
... .+. .. -+...+.+|++++||||++ ++|+.....++ +++... .+++++|+
T Consensus 85 ----~~~---~~~--------~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 85 ----LMD---EGK--------DT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTII 138 (180)
T ss_dssp ----HHH---HTC--------CS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred ----Hhc---Cch--------HH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEE
Confidence 010 000 00 1122345999999999996 89998877665 455443 47899999
Q ss_pred EccCcC
Q 039402 798 VTHQVE 803 (1496)
Q Consensus 798 vtH~~~ 803 (1496)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999863
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.95 E-value=4.3e-12 Score=145.90 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=98.0
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccc-ccccc-ch
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDP-VMFEG-TV 1337 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~g-TI 1337 (1496)
+.+++++++++++| ++++||+|+|||||+++|.+...+ |.|.++|.++......+.+++++.++|++ ..+.. ++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 35899999999999 999999999999999999999876 79999999998777777888899999986 34433 77
Q ss_pred hhccCCCCCC-cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC
Q 039402 1338 RSNLDPLEES-TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1338 R~NLdp~~~~-sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs 1411 (1496)
.+|+|-.... .+.+. + ...+.+.+++ ..|||||+|+..+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~-~-----~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET-G-----ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eehhhhhhcccCCCcc-h-----HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8999854322 11110 0 1112222221 347999999999999999999985 99975
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.93 E-value=1.8e-10 Score=134.32 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=80.4
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHh-cccEEEccccccc------ccchh
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLR-SRLSIIPQDPVMF------EGTVR 1338 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR-~~i~iIpQdp~LF------~gTIR 1338 (1496)
++.+|+.++++|+||||||||+++|. +.+|++|+|.+ +|.++.+.. ...+ .++++++|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 999987654 2223 3799999999542 3478
Q ss_pred hccC---C--------CCC--C---cHHHHHHHHHHcCCcH-HHHhccCCcccccccCCCCCCchHHHHHHHHH
Q 039402 1339 SNLD---P--------LEE--S---TDEQIWEALDKCQLGD-EVRKKEGKLDSKVTENGENWSMGQRQLVCLGR 1395 (1496)
Q Consensus 1339 ~NLd---p--------~~~--~---sd~eI~~aL~~~~L~~-~i~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1395 (1496)
+|+. | +.. + .+..+.++++..++.+ ...+.| ..||+.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 8872 2 211 1 2356889999999976 444433 247988888999987
No 253
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.92 E-value=8e-10 Score=134.48 Aligned_cols=140 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------------eEEEccCCccC-CCc
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------------KAYVAQSPWIQ-SGK 696 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------------~~yv~Q~~~i~-~~t 696 (1496)
+++||++++|++++|+|+||||||||+++|+|.+++.+|+|.+.|. ++|++|++..+ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788899999999999999999999999999999999999998641 47888887644 457
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCC--CCCCChHHHHHHHHHHHHcc-CC-CEEEEecCCCC
Q 039402 697 IEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGER--GINLSGGQKQRIQIARALYQ-DS-DIYLFDDPFSA 772 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~--g~~LSGGQkqRv~LARAl~~-~~-~illLDep~sa 772 (1496)
+++||.++..- + .|+-.+ +| .|.. -.+|-.--+||+.++|++.. .| +++|..|++++
T Consensus 364 V~e~l~~a~~~------------~--~DvVLI----DT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 364 IFDAIQAAKAR------------N--IDVLIA----DT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHT------------T--CSEEEE----CC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHhc------------C--CCEEEE----eC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 88888664210 0 011000 11 0110 01222334688999998754 45 46777778888
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEcc
Q 039402 773 VDAHTGSHLFQEVLLGLLSSKTVIYVTH 800 (1496)
Q Consensus 773 LD~~~~~~i~~~~~~~~~~~~tvilvtH 800 (1496)
.|+....+-|++ .-+.|.|++||
T Consensus 425 q~al~~ak~f~~-----~~~itgvIlTK 447 (503)
T 2yhs_A 425 QNAVSQAKLFHE-----AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHHHH-----HTCCSEEEEEC
T ss_pred HHHHHHHHHHHh-----hcCCCEEEEEc
Confidence 665432222211 23789999999
No 254
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=9.8e-10 Score=114.34 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=65.2
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
+|+++ +|+.++|+||+|||||||++++.|++.+ +|. +..|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~~~~-------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASMPLT-------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTSCCC--------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHhhHH--------------------
Confidence 45665 8999999999999999999999999876 461 2334433221110
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH-hCCc
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL-LSSK 793 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~-~~~~ 793 (1496)
+++.+|++++||||++ +|....+.+++ +++.. .+|+
T Consensus 79 -----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~ 115 (149)
T 2kjq_A 79 -----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGK 115 (149)
T ss_dssp -----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTC
T ss_pred -----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCC
Confidence 2357899999999998 66555666664 45443 4578
Q ss_pred E-EEEEccC
Q 039402 794 T-VIYVTHQ 801 (1496)
Q Consensus 794 t-vilvtH~ 801 (1496)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 8 7777774
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.92 E-value=2.8e-12 Score=143.64 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=57.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh-ccc------------CCCccEEEECCeeCCCCChHHHhcccEEEcc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF-RIV------------EPAAGQILIDGIDISLIGLHDLRSRLSIIPQ 1328 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~-rl~------------ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQ 1328 (1496)
-.+++||++++|+.+||+|+||||||||+++|. +++ +|..|++ +|++....+...++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 4444443 4433332222222221 112
Q ss_pred cccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH-HHHH-HHccCCCEEEE
Q 039402 1329 DPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV-CLGR-VLLKRSKILML 1406 (1496)
Q Consensus 1329 dp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll-~LAR-ALLr~~~ILiL 1406 (1496)
+.+++.+++..|+-. .+.+++.++++.... .+ +|..+. | ...-++++ .-++ +++..|+..++
T Consensus 91 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--vi------ld~~~~--g---~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYG---VPRKNLEDNVDKGVS--TL------LVIDWQ--G---AFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TCEEEEEEETTEEEE---EECTTHHHHHHHTCE--EE------EECCHH--H---HHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred CceehhhhhccccCC---CCHHHHHHHHHcCCe--EE------EEcCHH--H---HHHHHHhcCCCeEEEEEECCcHHHH
Confidence 333333334444311 122334444443210 00 111000 0 00113332 1122 23556677778
Q ss_pred EcCCCCCCHHHHHHHHHHHHHh
Q 039402 1407 DEATASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1407 DEaTsslD~~Td~~Iq~~I~~~ 1428 (1496)
||.+++.|..+++.+++.|++.
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHC--------------CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999999988888877654
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.91 E-value=5.6e-12 Score=156.53 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=100.3
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee----------EEEccCCccC-CCcHHHHhc
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------AYVAQSPWIQ-SGKIEDNIL 702 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~----------~yv~Q~~~i~-~~ti~eNI~ 702 (1496)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|.. +++.|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999998743 3445443311 135665543
Q ss_pred -----------cCCCCCHHHHHHHHHHhch-------------hhHHHhc---cCCCccccc-------CCCCCCChHHH
Q 039402 703 -----------FGKEMNRERYNAVLDACSL-------------KKDLEIL---SFGDQTVIG-------ERGINLSGGQK 748 (1496)
Q Consensus 703 -----------~g~~~~~~~~~~v~~~~~l-------------~~d~~~l---~~g~~t~ig-------~~g~~LSGGQk 748 (1496)
+|.--+.+ ...++++... .+-++.+ +.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 23322233 3334444321 1111211 122111111 23346899999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccCcCcccc
Q 039402 749 QRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIY--VTHQVEFLPA 807 (1496)
Q Consensus 749 qRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvil--vtH~~~~l~~ 807 (1496)
||.++|. + | ++++|+..++.+++.+..-...++|+++ +||+++.+..
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9987752 1 6 9999998765443322221224788875 8999876643
No 257
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.89 E-value=1.8e-09 Score=130.04 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=82.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHH--HHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLS--CILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~--~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|++++|+||+|||||||++ ++.+..++..|. -.+...|+.-+. .++.++..+..+..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg--~~~~viyid~E~---------------~~~~~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG--GEGKCLYIDTEG---------------TFRPVRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSSEEEEEESSS---------------CCCHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC--CCCcEEEEeCCC---------------ccCHHHHHHHHHHc
Confidence 47899999999999999999999 456777775551 012233332221 12233333334444
Q ss_pred chhhH--HHhccCCCcccccCCCCCCCh-HHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHHH------------HHHH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSG-GQKQRIQIARALY--QDSDIYLFDDPFSAVDAHTG------------SHLF 782 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSG-GQkqRv~LARAl~--~~~~illLDep~saLD~~~~------------~~i~ 782 (1496)
++..+ ++.+. +.. ..++ .|.+.+.-++++. .+|+++++|+|++.+|+... ..+.
T Consensus 237 gl~~~~vleni~------~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il 307 (400)
T 3lda_A 237 GLDPDDALNNVA------YAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM 307 (400)
T ss_dssp TCCHHHHHHTEE------EEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred CCChHhHhhcEE------Eec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence 43221 11110 111 1111 2344444333332 47999999999999997543 2333
Q ss_pred HHHHHHHh-CCcEEEEEccCcC-------------------cccc-CCEEEEEeCC
Q 039402 783 QEVLLGLL-SSKTVIYVTHQVE-------------------FLPA-ADLILVMKDG 817 (1496)
Q Consensus 783 ~~~~~~~~-~~~tvilvtH~~~-------------------~l~~-~d~i~~l~~G 817 (1496)
+.+..... .+.|||+|+|... .+.+ +|.++.|+++
T Consensus 308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 33222222 3899999999831 1233 7888888765
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.87 E-value=1.3e-09 Score=126.54 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=101.0
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
+.++++++.|.+. + ++++|+ +|+.++|+|++|+||||++..|.+++.+.+|++.+.|.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~-~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE-A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------- 143 (295)
T ss_dssp HHHHHHHHHTTSS-C---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH-------
T ss_pred HHHHHHHHHHCCC-C---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH-------
Confidence 5566777777543 1 678888 99999999999999999999999999999999999998875422111
Q ss_pred EcccccccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEE
Q 039402 1326 IPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILM 1405 (1496)
Q Consensus 1326 IpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILi 1405 (1496)
++....+..+ ++-.. .+..-...+.|+.+++++..++++++|
T Consensus 144 -------------------------ql~~~~~~~~-----------l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKVG-----------VPVLE--VMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHHT-----------CCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccCC-----------eEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0001111111 21111 111123445678899999889999999
Q ss_pred EEcC-CCCCCHHHHHHHHHHHHHhcCCcEEEEEc
Q 039402 1406 LDEA-TASVDTATDNLIQQTLRQHFSDCTVLTIA 1438 (1496)
Q Consensus 1406 LDEa-TsslD~~Td~~Iq~~I~~~f~~~TVI~IA 1438 (1496)
+||| |+++|...-+.+.+..+...++.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988888888877766666665553
No 259
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.87 E-value=6.7e-11 Score=131.67 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=102.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---CCCccEEEE--------CCeeCCC-CChHHHhcccEEEcccc------cccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIV---EPAAGQILI--------DGIDISL-IGLHDLRSRLSIIPQDP------VMFE 1334 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~---ep~~G~I~I--------DG~dI~~-i~l~~LR~~i~iIpQdp------~LF~ 1334 (1496)
+.+|||+|++||||||+++.|.+.+ .++.|.|.. +|.++.. ..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999998876 788999988 7888763 56778999999999987 4555
Q ss_pred cchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccc-cCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC
Q 039402 1335 GTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVT-ENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~-e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs 1411 (1496)
.++.+++ .++++.+++..+..++.+.....+.++.+. ++|.-++|+ .++++++++++++|+++++.
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 5777775 367899999999999999887666655443 455667776 45667888999999988763
No 260
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.86 E-value=3.9e-11 Score=145.28 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=76.7
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------------eEEE---------cc
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------------KAYV---------AQ 688 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------------~~yv---------~Q 688 (1496)
+|+++ + .++|++++|+|||||||||||++|+|+++|.+|+|.+.+. +++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 3789999999999999999999999999999999987542 1232 36
Q ss_pred CCccC--C-----CcHHHHhccCC----------CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHH
Q 039402 689 SPWIQ--S-----GKIEDNILFGK----------EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRI 751 (1496)
Q Consensus 689 ~~~i~--~-----~ti~eNI~~g~----------~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv 751 (1496)
+|.+. . .|+++|+.++. ..+.......+...++.+. ....+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~-------------~~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF-------------LISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH-------------HHHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH-------------HHHHHHHHHHHHH-
Confidence 66542 1 26777765421 0111111112222232211 1346899999999
Q ss_pred HHHHHHccCCCEEEE
Q 039402 752 QIARALYQDSDIYLF 766 (1496)
Q Consensus 752 ~LARAl~~~~~illL 766 (1496)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998753
No 261
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.85 E-value=8.8e-11 Score=137.37 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=74.0
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEe-------------------eCCcEEEEEcCCCCCHHHHHHHHhcccC--CCc
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTF-------------------PGGEKTGIVGRTGSGKSTLIQTLFRIVE--PAA 1301 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I-------------------~~GekvgIVGrTGSGKSTLl~~L~rl~e--p~~ 1301 (1496)
.+.|+++||++.|. ++++++++++ ++|+.+||+|++|||||||+++|.+++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 45699999999993 5899999998 8999999999999999999999999998 999
Q ss_pred cEEEE---CCeeCCCCChHHHhcccEEEcccccccc-cchhhcc
Q 039402 1302 GQILI---DGIDISLIGLHDLRSRLSIIPQDPVMFE-GTVRSNL 1341 (1496)
Q Consensus 1302 G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1341 (1496)
|+|.+ ||.+.. ...|+.++++ |+..++. -|+.+|+
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 99999 998752 3456778888 7655432 2454444
No 262
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.84 E-value=9e-11 Score=138.79 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=95.7
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-----------------eEEEccCCccCC-
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-----------------KAYVAQSPWIQS- 694 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-----------------~~yv~Q~~~i~~- 694 (1496)
+.+|+++||++++|++++|+|+||||||||+++|+|.+.|++|+|.+.|. ++|++|++.++.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 45899999999999999999999999999999999999999999987652 478888877653
Q ss_pred ---------Cc---HHHHhc-c-------------CCCCCHHHHHHHHHHh-------------chhhHHHhccCC-Ccc
Q 039402 695 ---------GK---IEDNIL-F-------------GKEMNRERYNAVLDAC-------------SLKKDLEILSFG-DQT 734 (1496)
Q Consensus 695 ---------~t---i~eNI~-~-------------g~~~~~~~~~~v~~~~-------------~l~~d~~~l~~g-~~t 734 (1496)
|| ++|.+. + |....+....+..+.+ .+.+.+...+.- .-+
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN 201 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence 11 233221 0 0000111100000000 000000001100 001
Q ss_pred cccC-CCCCCChHHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHH
Q 039402 735 VIGE-RGINLSGGQKQRIQIARALYQ------DSDIYLFDDPFSAVDAHTGSHLFQEVL 786 (1496)
Q Consensus 735 ~ig~-~g~~LSGGQkqRv~LARAl~~------~~~illLDep~saLD~~~~~~i~~~~~ 786 (1496)
.++. ....+|+|++|++..|++++. +|+++. +||+|......+++.+.
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 1111 124579999999999999987 688886 99999999888876543
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.83 E-value=8e-10 Score=120.82 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=80.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCCC-
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDPL- 1344 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~- 1344 (1496)
|+++++|+.+||+|+||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 5788999999999999999999999999996 3 689999888887766678899999999988865 566665321
Q ss_pred ---C---CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcC
Q 039402 1345 ---E---ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEA 1409 (1496)
Q Consensus 1345 ---~---~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEa 1409 (1496)
+ ..+.+++.++++.. .+. + -.+..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g------------~~v-i-------~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAG------------RDV-L-------LEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTT------------CEE-E-------EECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcC------------CeE-E-------EEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1 12345566655432 111 1 11234444455555666666777666
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=1.2e-09 Score=127.13 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=68.9
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHhcccEEEccccc-------------
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLRSRLSIIPQDPV------------- 1331 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~------------- 1331 (1496)
|++.+|+.++|+|+||||||||+++|.|+..|++|+|.+ +|.++.+.......+++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9999876552211236999999995
Q ss_pred ---cccc-chhhccCCCC----CCcHHHHHHHHHHcCCc-HHHHhccC
Q 039402 1332 ---MFEG-TVRSNLDPLE----ESTDEQIWEALDKCQLG-DEVRKKEG 1370 (1496)
Q Consensus 1332 ---LF~g-TIR~NLdp~~----~~sd~eI~~aL~~~~L~-~~i~~lp~ 1370 (1496)
+|.. |+ +|+.... .-.+..+.++|++++|. +.....|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 77 8886311 12345789999999995 55555554
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.77 E-value=4.4e-09 Score=123.46 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=82.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee-------------------EEEccCCccCC-CcHHHHhc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------------AYVAQSPWIQS-GKIEDNIL 702 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~-------------------~yv~Q~~~i~~-~ti~eNI~ 702 (1496)
.++|++++|+|||||||||+++.|+|.++|.+|+|.+.|.. .|++|.+.+.. .+++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999987632 47888776543 47888876
Q ss_pred cCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 039402 703 FGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLF 782 (1496)
Q Consensus 703 ~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~ 782 (1496)
++.. + ..|.-.+ +| .|... .-..=.++--.++|++..++++++||.++ +.|.....+-|
T Consensus 206 ~~~~----------~----~~d~vli----Dt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~~ 264 (328)
T 3e70_C 206 HAKA----------R----GIDVVLI----DT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALA-GNAIVEQARQF 264 (328)
T ss_dssp HHHH----------H----TCSEEEE----EE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHHH
T ss_pred HHHh----------c----cchhhHH----hh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHH
Confidence 5310 0 0111000 01 01100 00011223334899998887777887444 33332211111
Q ss_pred HHHHHHHhCCcEEEEEccC
Q 039402 783 QEVLLGLLSSKTVIYVTHQ 801 (1496)
Q Consensus 783 ~~~~~~~~~~~tvilvtH~ 801 (1496)
. ...+.|.|++||.
T Consensus 265 ----~-~~~~it~iilTKl 278 (328)
T 3e70_C 265 ----N-EAVKIDGIILTKL 278 (328)
T ss_dssp ----H-HHSCCCEEEEECG
T ss_pred ----H-HhcCCCEEEEeCc
Confidence 1 1247899999995
No 266
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=8.2e-09 Score=122.81 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=72.9
Q ss_pred EEEEEecCCCcHHHHHHHHhc-CCCCCccEEEEcCe-----------eEEEccCCccC-CCcHHHHhccCCCCCHHHHHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILG-EVPKISGTLKLCGT-----------KAYVAQSPWIQ-SGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG-~~~~~~G~i~~~g~-----------~~yv~Q~~~i~-~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
.+.|+||+|+||||++++++| .+.|..|.+.++|. ++|++|.+++. +.+- .+ ..+....++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MG-NNDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cC-CcchHHHHH
Confidence 389999999999999999999 67889999887753 35666665542 1110 00 011112223
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKT 794 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~t 794 (1496)
.++.... ..+. .+.. +||| +..+|+++++|||++ ||+.....+.+ .++...++.+
T Consensus 112 ~i~~~~~-----~~~~------~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVAQ-----MEQV------DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRR-TMEKYSKNIR 166 (354)
T ss_dssp HHHHHTT-----TTC------------------------------CCEEEEEECTTS-SCHHHHHHHHH-HHHHSTTTEE
T ss_pred HHHHHHH-----hccc------cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhcCCCE
Confidence 3322211 1110 0111 5666 778999999999999 99998777764 4555556789
Q ss_pred EEEEccCcCcc
Q 039402 795 VIYVTHQVEFL 805 (1496)
Q Consensus 795 vilvtH~~~~l 805 (1496)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998754
No 267
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=3.2e-11 Score=144.32 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=111.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc------------ccCCCccEEEECCeeCCCCC-hHHHhccc---EEEcccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR------------IVEPAAGQILIDGIDISLIG-LHDLRSRL---SIIPQDPVM 1332 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r------------l~ep~~G~I~IDG~dI~~i~-l~~LR~~i---~iIpQdp~L 1332 (1496)
.+++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+++.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 77899999999885422110 00011222 356677766
Q ss_pred ccc-chhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCC--CEEEEEcC
Q 039402 1333 FEG-TVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRS--KILMLDEA 1409 (1496)
Q Consensus 1333 F~g-TIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~--~ILiLDEa 1409 (1496)
..| |..++|. .+.+..++.+..--++-.. .+ ......+|++. +| +|+++||+
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhhchhh
Confidence 654 4444432 1233344433211011000 00 11122244442 78 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cC-CcEEEEEccCcchhcc-cCEEE-EEeCC-eEeEecChh
Q 039402 1410 TASVDTATDNLIQQTLRQH-FS-DCTVLTIAHRITSVID-SDLVL-LLNHG-LIEEFDNPA 1465 (1496)
Q Consensus 1410 TsslD~~Td~~Iq~~I~~~-f~-~~TVI~IAHRl~ti~~-~DrIl-VL~~G-~IvE~g~p~ 1465 (1496)
++..|.+.-+...+.++.. .+ +.|+ ++|.+..+.. ||+|. +|++| +++..|++.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999988888888776 43 4564 3999988876 99999 99999 888666543
No 268
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.75 E-value=3.4e-09 Score=129.64 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=62.7
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH--------H
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH--------D 1318 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~--------~ 1318 (1496)
.+.++++.+. .+|+|+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.++|.++...+.. .
T Consensus 8 ~l~~l~~~~~----~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLINW----NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEecc----ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 4556655432 379999999999 99999999999999999999999999999999999998765432 1
Q ss_pred HhcccEEEcccc
Q 039402 1319 LRSRLSIIPQDP 1330 (1496)
Q Consensus 1319 LR~~i~iIpQdp 1330 (1496)
++..+.++.+++
T Consensus 83 ~~~~~~~~~~~~ 94 (483)
T 3euj_A 83 LKAGVCYAVLET 94 (483)
T ss_dssp SCSSEEEEEEEE
T ss_pred cCCCceEEEEeh
Confidence 233346665554
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.75 E-value=1.3e-08 Score=118.38 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.7
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCC
Q 039402 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLE 1345 (1496)
Q Consensus 1266 iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~ 1345 (1496)
+++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+.... .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------A-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------H--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------H--------
Confidence 34556789999999999999999999999999999999999888753211 0
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH---HHHHHHccCCCEEEEEcCCC
Q 039402 1346 ESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV---CLGRVLLKRSKILMLDEATA 1411 (1496)
Q Consensus 1346 ~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll---~LARALLr~~~ILiLDEaTs 1411 (1496)
.+++...+++.++ +. + ...|+|+.|++ +++||+.++++++|+|||+.
T Consensus 148 ---~eqL~~~~~~~gl-----------~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---IEQLKIWGERVGA-----------TV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---HHHHHHHHHHHTC-----------EE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---HHHHHHHHHHcCC-----------cE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1223233333332 11 1 13478999999 99999999999999999984
No 270
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.72 E-value=1.8e-09 Score=122.55 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=81.6
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHh---cccCCCccEEE--------ECCeeC-CCCChHHHhcccEEEccc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQIL--------IDGIDI-SLIGLHDLRSRLSIIPQD 1329 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I~--------IDG~dI-~~i~l~~LR~~i~iIpQd 1329 (1496)
++++.+ ++|++|||+|++||||||++++|. |+..|++|.|+ .+|.++ ....+..+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 999999 456788999999999965
Q ss_pred c------cccccchhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcc
Q 039402 1330 P------VMFEGTVRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLD 1373 (1496)
Q Consensus 1330 p------~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLd 1373 (1496)
+ .++..++.+|+. .+++..+...+...+.|++....+.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~ 139 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQ 139 (252)
T ss_dssp ETTEEEEEETTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred CCCCceEEECCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4 566678888864 4677788888888887766544333
No 271
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.71 E-value=3.5e-09 Score=123.33 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=70.8
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe-------------eEEEccCCccC------CCcHHH
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT-------------KAYVAQSPWIQ------SGKIED 699 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~-------------~~yv~Q~~~i~------~~ti~e 699 (1496)
++.+|++++++||||||||||+++|+ ..+|.+|+|.+ +|+ ++|++|+|.++ ..|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 652 48999999764 4578 8
Q ss_pred Hh--ccCC------------C--CCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHH
Q 039402 700 NI--LFGK------------E--MNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIAR 755 (1496)
Q Consensus 700 NI--~~g~------------~--~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LAR 755 (1496)
|+ .|+. . ....+.+++++..++.++. .......|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~----------~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCER----------YKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHH----------HHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 88 5541 0 0122344555555543311 12334679999999999987
No 272
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=1.3e-10 Score=139.05 Aligned_cols=157 Identities=12% Similarity=0.135 Sum_probs=104.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhc------------CCCCCccEEEEcC-----------------eeEEEccCCcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILG------------EVPKISGTLKLCG-----------------TKAYVAQSPWI 692 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG------------~~~~~~G~i~~~g-----------------~~~yv~Q~~~i 692 (1496)
.+++|..++|+|+||+|||||+++|.| .+.|+.|.+.++| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 4578999999987 24577788876
Q ss_pred CCC-cHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEecC
Q 039402 693 QSG-KIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDS--DIYLFDDP 769 (1496)
Q Consensus 693 ~~~-ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~--~illLDep 769 (1496)
..+ +..|++ .. .+...++.+.. -+.....-+ ......++|+. || |+.++|||
T Consensus 96 ~~~~s~~e~L------~~-~fl~~ir~~d~--il~Vvd~~~----d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL------GN-AFLSHVRAVDA--IYQVVRAFD----DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS------CH-HHHHHHTTCSE--EEEEEECCC----TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH------HH-HHHHHHHHHHH--HHHHHhccc----cceeeeecccc------------Ccchhhhhchhh
Confidence 543 332222 11 12222222211 011111111 12334456653 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhCCcEEEEEccCcCcccc-CCEEE-EEeCC-eEEEecCh
Q 039402 770 FSAVDAHTGSHLFQEVLLG-LLSSKTVIYVTHQVEFLPA-ADLIL-VMKDG-KITQAGKY 825 (1496)
Q Consensus 770 ~saLD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G-~i~~~G~~ 825 (1496)
++.+|+...+..++.+... ...|+|++ +|..+.+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999887776543333 23466753 999887665 99999 89999 88766654
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.68 E-value=1.2e-08 Score=118.16 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=90.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHH
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDE 1350 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ 1350 (1496)
++|+.++++|++||||||++..|.+.+.+.+| .++.++++|+. ..+.. +
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~-----------e 151 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAV-----------E 151 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHH-----------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHH-----------H
Confidence 47899999999999999999999999988778 25666777763 22222 2
Q ss_pred HHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc-
Q 039402 1351 QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHF- 1429 (1496)
Q Consensus 1351 eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f- 1429 (1496)
++....+..+ ++.... ..++..+.+++++ ++++++|+| |+++|+..+..+.+..+-.-
T Consensus 152 qL~~~~~~~g-----------l~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 152 QLKTYAELLQ-----------APLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp HHHHHHTTTT-----------CCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred HHHHHHHhcC-----------CCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 2222222222 111111 1134456677764 899999999 99999877776665443321
Q ss_pred --CCcEEEEE--ccCcchhcc-cCEEEEEeCCeEeE
Q 039402 1430 --SDCTVLTI--AHRITSVID-SDLVLLLNHGLIEE 1460 (1496)
Q Consensus 1430 --~~~TVI~I--AHRl~ti~~-~DrIlVL~~G~IvE 1460 (1496)
.+.+++++ +|..+.+.+ +|++-.++.|.|+-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 34456666 898777766 77666666677664
No 274
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.65 E-value=8.1e-11 Score=135.26 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=85.6
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCC-ccC-CCcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSP-WIQ-SGKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~-~i~-~~ti~ 698 (1496)
.+++++++++++| ++++||||||||||+++|+|+..+ |.+.++|. +++++|.+ ... .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999887 68888763 23444443 111 12444
Q ss_pred HHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-------
Q 039402 699 DNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS------- 771 (1496)
Q Consensus 699 eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s------- 771 (1496)
|||-......... . .. . ......+...+|||||+||+.+++|+..+|+++ |+++.
T Consensus 110 Deid~~~~~r~~~--~-~~--~-----------~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E-TG--A-----------SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c-ch--H-----------HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 5554322110000 0 00 0 011122334579999999999999999999975 99864
Q ss_pred -----CCCHHHHHHHHHH
Q 039402 772 -----AVDAHTGSHLFQE 784 (1496)
Q Consensus 772 -----aLD~~~~~~i~~~ 784 (1496)
.-|......|++.
T Consensus 172 ~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKT 189 (274)
T ss_dssp EEECCSCCHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHH
Confidence 3367777767654
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.63 E-value=1.9e-09 Score=116.66 Aligned_cols=140 Identities=20% Similarity=0.165 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CccEEEECCeeCCC--CChHHHhcccEEEccccccccc--chhh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEP-----------AAGQILIDGIDISL--IGLHDLRSRLSIIPQDPVMFEG--TVRS 1339 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep-----------~~G~I~IDG~dI~~--i~l~~LR~~i~iIpQdp~LF~g--TIR~ 1339 (1496)
+++|+|++|||||||++.|.+...+ ..|+|.+||.++.- .+....++..++++|...-..+ ++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 8999999999999999999998765 57999999976531 1111122233444442211111 2333
Q ss_pred ccCCCCCCcHHHH---HHHHHH-cCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCH
Q 039402 1340 NLDPLEESTDEQI---WEALDK-CQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDT 1415 (1496)
Q Consensus 1340 NLdp~~~~sd~eI---~~aL~~-~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~ 1415 (1496)
+.++. +-+++ .+.++. +.....+...-++.|- ..-..+....||++.++|+++++| ||++|.
T Consensus 111 ~~~~~---s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl---------~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---TYENVERWLKELRDHADSNIVIMLVGNKSDL---------RHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---HHHTHHHHHHHHHHHSCTTCEEEEEEECGGG---------GGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECccc---------ccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 32211 11111 111211 1100000000112221 111123467899999999999999 999999
Q ss_pred HHHHHHHHHHHHh
Q 039402 1416 ATDNLIQQTLRQH 1428 (1496)
Q Consensus 1416 ~Td~~Iq~~I~~~ 1428 (1496)
..-..+.+.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9888888777653
No 276
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=4.5e-09 Score=121.88 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=56.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE---CCeeCCCCChHHHhcccEEEcccccccc-----cchhhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI---DGIDISLIGLHDLRSRLSIIPQDPVMFE-----GTVRSN 1340 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I---DG~dI~~i~l~~LR~~i~iIpQdp~LF~-----gTIR~N 1340 (1496)
++.+|+.++|+|+||+|||||+++|.|+..|..|+|.+ +|.++++.. ...+..+++++|+|-++. -|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 898876543 222223899999997654 477 88
Q ss_pred cC-CCC------------C--C---cHHHHHHHHHHcCCcHH
Q 039402 1341 LD-PLE------------E--S---TDEQIWEALDKCQLGDE 1364 (1496)
Q Consensus 1341 Ld-p~~------------~--~---sd~eI~~aL~~~~L~~~ 1364 (1496)
|. .+. . + .+..+.++++..++.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 72 111 1 1 23467888888888754
No 277
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.59 E-value=3.3e-08 Score=127.13 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=74.5
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCC--CccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC--
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP--AAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-- 1342 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd-- 1342 (1496)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987654 78998 8899999999999999999999999999999999983
Q ss_pred CCCCCcHHHHHHHHHHcCC
Q 039402 1343 PLEESTDEQIWEALDKCQL 1361 (1496)
Q Consensus 1343 p~~~~sd~eI~~aL~~~~L 1361 (1496)
|...--..+...+++.++.
T Consensus 82 pG~~~f~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADA 100 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSE
T ss_pred CCccchHHHHHHHHhhcCc
Confidence 5332112455566655543
No 278
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.55 E-value=1.4e-10 Score=137.26 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=98.7
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCC-------cEEEEEcCCCCCHHHHHHHHhccc----CCCccEEEECCeeCCCC
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGG-------EKTGIVGRTGSGKSTLIQTLFRIV----EPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~G-------ekvgIVGrTGSGKSTLl~~L~rl~----ep~~G~I~IDG~dI~~i 1314 (1496)
++.++++..|.. +.+++++++.+++| +.++|+||+|+|||||++++.+.+ .|++|.+..+|.|+..+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455555643 35899999999887 899999999999999999999998 67888888777665432
Q ss_pred ChHHH-hcccEEEcccccccccchhhccCCCCCCcHHHHHHHHHHcCCc---------HHHHh-cc-CCcccccccCCCC
Q 039402 1315 GLHDL-RSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWEALDKCQLG---------DEVRK-KE-GKLDSKVTENGEN 1382 (1496)
Q Consensus 1315 ~l~~L-R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~aL~~~~L~---------~~i~~-lp-~gLdt~v~e~G~n 1382 (1496)
- ..+ +..+.+|+|.+.++. |+.++|.+ +++.-+.. ..+.. ++ -++.. .......
T Consensus 97 ~-~~~~~~~v~~iDE~~~l~~-~~~e~L~~-----------~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~ 162 (334)
T 1in4_A 97 L-TSLERGDVLFIDEIHRLNK-AVEELLYS-----------AIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL 162 (334)
T ss_dssp H-HHCCTTCEEEEETGGGCCH-HHHHHHHH-----------HHHTSCCCC---------------CCCEEEE-EESCGGG
T ss_pred H-HHccCCCEEEEcchhhcCH-HHHHHHHH-----------HHHhcccceeeccCcccccccccCCCeEEEE-ecCCccc
Confidence 1 122 457999999887765 67666632 11111100 00000 11 11211 1223357
Q ss_pred CCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHh
Q 039402 1383 WSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1383 LS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~ 1428 (1496)
||+|+|||++++ .++|+.+.+.+.+.|++.
T Consensus 163 Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 163 LSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 999999998655 677877777777777664
No 279
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.54 E-value=3.4e-09 Score=130.52 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=96.0
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd 1342 (1496)
.+++.+.++..+.|+|.|||||||++++|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++-+|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3678889999999999999999999999876 66777899998888888765555432 122221 1211110
Q ss_pred CCC---CCcHHH---HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHH----------HHHHHHccCCC-EEE
Q 039402 1343 PLE---ESTDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLV----------CLGRVLLKRSK-ILM 1405 (1496)
Q Consensus 1343 p~~---~~sd~e---I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll----------~LARALLr~~~-ILi 1405 (1496)
-.. ....+| -.+.+++.++.+.-. ++..+. ..+|+||+|+. ++|+++-..|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~-----yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNLAG-----YNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSHHH-----HHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHH-----HHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 000 000011 122333334332211 111111 12467776642 45677778888 789
Q ss_pred EEcCCCCCCHH---HHHHHHHHHHHhc-CCcEEEEEccCcc
Q 039402 1406 LDEATASVDTA---TDNLIQQTLRQHF-SDCTVLTIAHRIT 1442 (1496)
Q Consensus 1406 LDEaTsslD~~---Td~~Iq~~I~~~f-~~~TVI~IAHRl~ 1442 (1496)
+||+++-+|.. .++.+.+..+.-. .+.++|++|||++
T Consensus 303 IDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988743 2334444444332 2789999999998
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.53 E-value=6.4e-07 Score=100.37 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred cceee-eEEeeCCcEEEEEcCCCCCHHHHHHHH-hcccCCCccEEEECCeeCCCCChHHHh---cccEEEcccccccccc
Q 039402 1262 VLQGI-SCTFPGGEKTGIVGRTGSGKSTLIQTL-FRIVEPAAGQILIDGIDISLIGLHDLR---SRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1262 vLk~i-S~~I~~GekvgIVGrTGSGKSTLl~~L-~rl~ep~~G~I~IDG~dI~~i~l~~LR---~~i~iIpQdp~LF~gT 1336 (1496)
.|+.+ .--+++|+.++|+|++|||||||+..+ ....+...+.+++++.. +..+++ .++++.+|++...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~--- 83 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK--- 83 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH---
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC---
Confidence 45655 557899999999999999999996544 55555444556666532 233333 3466666653210
Q ss_pred hhhccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCC-
Q 039402 1337 VRSNLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASV- 1413 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTssl- 1413 (1496)
.|+...+.+.+ . .+. ... .+..+.+. +....++...++.++ .+++++++||+|+-.
T Consensus 84 --~~l~~~~~~~~-----~---~~~---~~~----~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 84 --GMFAMVDAFTA-----G---IGK---SKE----YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp --TSEEEEECSTT-----T---TCC-----C----CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred --CcEEEEecchh-----h---ccc---ccc----cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 12210000000 0 000 000 00001111 123445555555555 469999999999877
Q ss_pred -CHHH-HHHHHHHHHHh-cCCcEEEEEccCcch--------h-cccCEEEEEeC
Q 039402 1414 -DTAT-DNLIQQTLRQH-FSDCTVLTIAHRITS--------V-IDSDLVLLLNH 1455 (1496)
Q Consensus 1414 -D~~T-d~~Iq~~I~~~-f~~~TVI~IAHRl~t--------i-~~~DrIlVL~~ 1455 (1496)
|... .+.+.+..+.. -.++|||+++|.... + ..||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5422 33333333221 147999999997764 2 45899999975
No 281
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.51 E-value=1.8e-07 Score=110.87 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=85.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccE-EEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ-ILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEES 1347 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~-I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~ 1347 (1496)
-+++|+.+.|.|++|||||||+..+..-....+|. ++||.-.- ... ...+++++-+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-------------- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-------------- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe--------------
Confidence 57899999999999999999988877555433443 45554321 111 1122333322221100
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccC--CCEEEEEcCCCCC----------CH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKR--SKILMLDEATASV----------DT 1415 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~--~~ILiLDEaTssl----------D~ 1415 (1496)
.. .+ -.|.+.+++++.++ |+++|+||+|+-+ |.
T Consensus 120 ------------------------------~~---~~--~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 120 ------------------------------QP---DT--GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ------------------------------CC---SS--HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ------------------------------cC---CC--HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00 01 13455678888765 9999999999988 22
Q ss_pred ---HHHHHHHHHHHHh-----cCCcEEEEEccCcc----------------hhc-ccCEEEEEeCCeEeEecC
Q 039402 1416 ---ATDNLIQQTLRQH-----FSDCTVLTIAHRIT----------------SVI-DSDLVLLLNHGLIEEFDN 1463 (1496)
Q Consensus 1416 ---~Td~~Iq~~I~~~-----f~~~TVI~IAHRl~----------------ti~-~~DrIlVL~~G~IvE~g~ 1463 (1496)
...+.+.+.+++. -.++|||+++|-.. .+. .||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112334444332 13899999999543 132 499999998887655443
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.49 E-value=2.9e-08 Score=107.10 Aligned_cols=128 Identities=19% Similarity=0.309 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
|+.+||+||||||||||+++|.++++ |.+|++ ||+++...+.+..+..+ .|+.+++.+++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 57899999999999999999999998 788875 88887777766666543 3666777777777
Q ss_pred ccCCCCCCcHHHHHHHHHHcC---C------cHHHHh--------------ccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALDKCQ---L------GDEVRK--------------KEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~---L------~~~i~~--------------lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
|+- + .+.+++.++++... + ...+.. .++.|...+.++|..-....+||+.-|+.
T Consensus 76 ~~y--g-~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~ 152 (186)
T 3a00_A 76 NYY--G-STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQA 152 (186)
T ss_dssp EEE--E-EEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------
T ss_pred eec--c-CcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 752 1 23455555555422 1 011222 11345556666777666777888888887
Q ss_pred Hc-----cCCCEEEEEc
Q 039402 1397 LL-----KRSKILMLDE 1408 (1496)
Q Consensus 1397 LL-----r~~~ILiLDE 1408 (1496)
-+ +..+.+|..+
T Consensus 153 ~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 153 ELAYAETGAHDKVIVND 169 (186)
T ss_dssp ------CCCCSEEEECS
T ss_pred HHHhhcccCCcEEEECc
Confidence 55 4456666554
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.48 E-value=5.9e-08 Score=112.77 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=72.3
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
+++.++|++++|+|++||||||++..|++.+.+..|+|.+.+ .++ +.....++ .....+..
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~------~D~--~r~~a~eq-----------L~~~~~~~ 158 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA------ADT--FRAAAIEQ-----------LKIWGERV 158 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE------ECT--TCHHHHHH-----------HHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc------ccc--ccHHHHHH-----------HHHHHHHc
Confidence 445678999999999999999999999999988877776543 222 11111111 11111111
Q ss_pred chhhHHHhccCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 039402 720 SLKKDLEILSFGDQTVIGERGINLSGGQKQRI---QIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEV 785 (1496)
Q Consensus 720 ~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv---~LARAl~~~~~illLDep~saLD~~~~~~i~~~~ 785 (1496)
+ ++ . ...+|||+.|++ ++++|+..++|++|+|+|.. .+....+++++
T Consensus 159 g-------l~-----~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL 208 (306)
T 1vma_A 159 G-------AT-----V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL 208 (306)
T ss_dssp T-------CE-----E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred C-------Cc-----E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence 1 11 1 124689999999 99999999999999999974 34444555443
No 284
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.47 E-value=5.2e-10 Score=128.81 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=97.9
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++++...|.. +.+++++++++++| ++|+|++|+|||||+++|.+... .|.|.++|.++........+++++.+
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666642 46899999999999 99999999999999999999885 79999999887665555667778888
Q ss_pred ccccc-cccc-chhhccCCCCCC-------cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1327 PQDPV-MFEG-TVRSNLDPLEES-------TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1327 pQdp~-LF~g-TIR~NLdp~~~~-------sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|++. .+.. ++.||+|-+... .+++..+.+. .+. ..+||||+|+..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~---------~ll-----------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN---------QLL-----------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH---------HHH-----------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH---------HHH-----------HHHhCCCCCCCEEEEEe
Confidence 88864 3333 667777522110 1122222221 111 13689999999999999
Q ss_pred ccCCCEEEEEcCC
Q 039402 1398 LKRSKILMLDEAT 1410 (1496)
Q Consensus 1398 Lr~~~ILiLDEaT 1410 (1496)
..+|++ |||+.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67764
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.47 E-value=9.7e-08 Score=110.67 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=86.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhh
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKK 723 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~ 723 (1496)
++|++++++|+|||||||++..|++.+.+.+| .++.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g--- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ--- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----CCEEEEECCCS--STTHHHHHHH-----------HHTTTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CEEEEEecCcc--cchHHHHHHH-----------HHHhcC---
Confidence 46899999999999999999999999988777 25677888773 3333333211 000000
Q ss_pred HHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEE--
Q 039402 724 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLL---SSKTVIYV-- 798 (1496)
Q Consensus 724 d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~---~~~tvilv-- 798 (1496)
+|. ... ..++..+.+++++ .++|++|+| |+++|+..... +.++..... ...+++++
T Consensus 162 ----l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~-~~el~~~l~~~~~~~~~lVl~a 222 (296)
T 2px0_A 162 ----APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQY-IDELKETIPFESSIQSFLVLSA 222 (296)
T ss_dssp ----CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHH-HHHHHHHSCCCTTEEEEEEEET
T ss_pred ----CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHH-HHHHHHHHhhcCCCeEEEEEEC
Confidence 110 000 1235567788865 999999999 88999865433 334333222 22334444
Q ss_pred ccCcCcccc-CCEEEEEeCCeEEE
Q 039402 799 THQVEFLPA-ADLILVMKDGKITQ 821 (1496)
Q Consensus 799 tH~~~~l~~-~d~i~~l~~G~i~~ 821 (1496)
||..+.+.. ++++..++.+.++.
T Consensus 223 t~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 223 TAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888766544 66555566677665
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.47 E-value=6.5e-07 Score=100.32 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCceeee-eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhc-cCCCCCHH
Q 039402 633 NPTLKDI-NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNIL-FGKEMNRE 710 (1496)
Q Consensus 633 ~~~L~~i-~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~-~g~~~~~~ 710 (1496)
.+.|+++ .--+++|++++|+||+|||||||+..++....+..+ .+.|+.-+.. ...+.+... +|... +
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~------~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE------PGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC------CEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC------eEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 3456665 556899999999999999999997655544332222 3344443321 012222221 22222 1
Q ss_pred HHHHHHHHhchhhHHHhcc--CCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHHHH
Q 039402 711 RYNAVLDACSLKKDLEILS--FGDQTVIGERGINLSGGQKQRIQIARALY--QDSDIYLFDDPFSAV--DAHTGSHLFQE 784 (1496)
Q Consensus 711 ~~~~v~~~~~l~~d~~~l~--~g~~t~ig~~g~~LSGGQkqRv~LARAl~--~~~~illLDep~saL--D~~~~~~i~~~ 784 (1496)
.+. +.-.+. ..+... .+.....+.....-+....+....++.++ .+|+++++|+|++.+ |+....+.+..
T Consensus 79 ~~~---~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~ 154 (247)
T 2dr3_A 79 PYE---EKGMFA-MVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ 154 (247)
T ss_dssp HHH---HHTSEE-EEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH
T ss_pred HHh---hCCcEE-EEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH
Confidence 110 000000 000000 00000000000011122333334444443 579999999999888 55444455555
Q ss_pred HHHHH-hCCcEEEEEccCcCc--------c-ccCCEEEEEeC
Q 039402 785 VLLGL-LSSKTVIYVTHQVEF--------L-PAADLILVMKD 816 (1496)
Q Consensus 785 ~~~~~-~~~~tvilvtH~~~~--------l-~~~d~i~~l~~ 816 (1496)
+.+.. ..|.|+|+++|.... + ..||.|+.|+.
T Consensus 155 l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 155 LKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 44433 358899999998754 2 34899999964
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.47 E-value=9.1e-08 Score=117.89 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=108.6
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEEECCeeCCCCChHHHhccc-----EEEcccccccc
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QILIDGIDISLIGLHDLRSRL-----SIIPQDPVMFE 1334 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~IDG~dI~~i~l~~LR~~i-----~iIpQdp~LF~ 1334 (1496)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+.+ .+...++.|+ ++-+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHHH-----
Confidence 368888888999999999999999999999999988766555 56665543 4456665553 222222
Q ss_pred cchhhccCCCCCCcHHHH---HHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcC
Q 039402 1335 GTVRSNLDPLEESTDEQI---WEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEA 1409 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI---~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEa 1409 (1496)
++. +..++++. .++++.. ... +-.+.+ ...+|.+|.+ ..+|.+. .+++++|+|++
T Consensus 263 --l~~-----g~l~~~~~~~~~~a~~~l------~~~----~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l 322 (454)
T 2r6a_A 263 --LRT-----GKLTPEDWGKLTMAMGSL------SNA----GIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYL 322 (454)
T ss_dssp --HHT-----SCCCHHHHHHHHHHHHHH------HSS----CEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECG
T ss_pred --Hhc-----CCCCHHHHHHHHHHHHHH------hcC----CEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccH
Confidence 111 13344442 3333322 111 112222 2468998876 5677776 57999999999
Q ss_pred CCCCCHH----H-H---HHHHHHHHHhc--CCcEEEEEcc-----------Ccc--------hhc-ccCEEEEEeCCeEe
Q 039402 1410 TASVDTA----T-D---NLIQQTLRQHF--SDCTVLTIAH-----------RIT--------SVI-DSDLVLLLNHGLIE 1459 (1496)
Q Consensus 1410 TsslD~~----T-d---~~Iq~~I~~~f--~~~TVI~IAH-----------Rl~--------ti~-~~DrIlVL~~G~Iv 1459 (1496)
+.-.+.. . . ..+.+.|+... .++|||+++| |+. .+. +||.|++|..++.-
T Consensus 323 ~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 323 QLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp GGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 9866431 1 1 34444554432 3899999999 132 343 59999999987653
No 288
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.46 E-value=1.7e-08 Score=116.96 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=41.1
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe------------eEEEccCCccCC-----CcHHHH
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT------------KAYVAQSPWIQS-----GKIEDN 700 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~------------~~yv~Q~~~i~~-----~ti~eN 700 (1496)
+++.+|++++|+||||+|||||+++|+|+.++..|+|.+ +|+ .+|++|+|.+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999987 442 589999998754 477 88
Q ss_pred hc
Q 039402 701 IL 702 (1496)
Q Consensus 701 I~ 702 (1496)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
No 289
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.46 E-value=5.9e-09 Score=121.88 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=54.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeEEE-------------------eCCcEEEEEecCCCcHHHHHHHHhcCCC--CCc
Q 039402 616 TALDIVDGNFSWDISSHNPTLKDINLKV-------------------FHGMRVAVCGTVGSGKSSLLSCILGEVP--KIS 674 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~~i~l~i-------------------~~G~~~~ivG~~GsGKSTLl~~ilG~~~--~~~ 674 (1496)
..++++++++.|. ++++++++.+ ++|++++|+|+||||||||+++|.|.++ |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 3578888888883 6899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---cC
Q 039402 675 GTLKL---CG 681 (1496)
Q Consensus 675 G~i~~---~g 681 (1496)
|+|.+ +|
T Consensus 111 G~i~vi~~d~ 120 (308)
T 1sq5_A 111 RRVELITTDG 120 (308)
T ss_dssp CCEEEEEGGG
T ss_pred CeEEEEecCC
Confidence 99988 66
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.46 E-value=2.9e-07 Score=106.71 Aligned_cols=112 Identities=16% Similarity=0.078 Sum_probs=74.5
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHH
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVL 716 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~ 716 (1496)
++++|+ +|++++++|++|+||||++..|+|.+.+..|+|.+.+ .++. .....+ ......
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~------~d~~--~~~~~~-----------ql~~~~ 149 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA------ADTQ--RPAARE-----------QLRLLG 149 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE------CCSS--CHHHHH-----------HHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec------CCcc--cHhHHH-----------HHHHhc
Confidence 567777 8999999999999999999999999998888876644 2221 111100 111111
Q ss_pred HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecC-CCCCCHHHHHHHH
Q 039402 717 DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDP-FSAVDAHTGSHLF 782 (1496)
Q Consensus 717 ~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep-~saLD~~~~~~i~ 782 (1496)
+..+ +..++.+. .-...+-+|.+|+++...++|++|+|+| ++++|+.....+.
T Consensus 150 ~~~~----l~~~~~~~---------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 150 EKVG----VPVLEVMD---------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp HHHT----CCEEECCT---------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred ccCC----eEEEEcCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 1111 11222111 1234456789999998899999999999 9999987666553
No 291
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.45 E-value=7.4e-09 Score=115.00 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=52.7
Q ss_pred eEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh--------
Q 039402 1245 KIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL-------- 1316 (1496)
Q Consensus 1245 ~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-------- 1316 (1496)
.++++|+...|.. ++++++ +.++|+||||||||||+++|.+++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888998776631 466667 8999999999999999999999999999999999999844322
Q ss_pred HHHhcccEEEccc
Q 039402 1317 HDLRSRLSIIPQD 1329 (1496)
Q Consensus 1317 ~~LR~~i~iIpQd 1329 (1496)
...|..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346788999985
No 292
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.40 E-value=6.7e-08 Score=118.25 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
.+|+|+||++++ ++++|+||||||||||+++|+|.++|++|+|.++|+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 479999999999 999999999999999999999999999999988873
No 293
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=9.1e-08 Score=111.38 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=56.9
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE---cCe-------------eEEEccCCcc------------
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL---CGT-------------KAYVAQSPWI------------ 692 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~---~g~-------------~~yv~Q~~~i------------ 692 (1496)
|++.+|++++++||||||||||+++|+|..+|++|+|.+ +|+ ++|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999998 552 5899999853
Q ss_pred -----CCCcHHHHhccCCC----CCHHHHHHHHHHhchh
Q 039402 693 -----QSGKIEDNILFGKE----MNRERYNAVLDACSLK 722 (1496)
Q Consensus 693 -----~~~ti~eNI~~g~~----~~~~~~~~v~~~~~l~ 722 (1496)
...|+ ||+.|+.. ....+..++++..+|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSC
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCC
Confidence 23477 99988531 1234567778877774
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.38 E-value=8.6e-08 Score=103.89 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=68.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccC-------------CCccEEEECCeeCCCCChHHHhcccEEEcccccccccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVE-------------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~e-------------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1336 (1496)
.-+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+++++.+ .|+.+++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~ 90 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGS 90 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhh
Confidence 34899999999999999999999999886 77888 899999999999999876 6999999999
Q ss_pred hhhccCCCCCCcHHHHHHHHHH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDK 1358 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~ 1358 (1496)
+++|+ ++ .+.+.+.+++++
T Consensus 91 ~~~n~--YG-t~~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGNM--FG-TKFETVHQIHKQ 109 (197)
T ss_dssp ETTEE--EE-EEHHHHHHHHHT
T ss_pred hhcee--cc-cchhhHHHHHhc
Confidence 99995 32 245667666654
No 295
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.38 E-value=1.4e-07 Score=120.51 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=102.2
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCc-cEEEECCeeCCCCChHHHhcccEEEcccc--------
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA-GQILIDGIDISLIGLHDLRSRLSIIPQDP-------- 1330 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~-G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-------- 1330 (1496)
..+++++++.+++|+.++|+|++|+|||||+++|.++..+.. |.+.+++.+... ....++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-----~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-----NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-----TSCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-----cCCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 889998876654 345688888754
Q ss_pred --------------ccc-ccchhhccCCCCCCc-HHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH
Q 039402 1331 --------------VMF-EGTVRSNLDPLEEST-DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG 1394 (1496)
Q Consensus 1331 --------------~LF-~gTIR~NLdp~~~~s-d~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA 1394 (1496)
..| ..+++.|+...+... ...+... + ......+-+.++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~----~~~~~~L~G~~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T----GAHAGALLGDVRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T----TCCHHHHHCEECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C----CCCHHhcCceEEech-hhcCCccccccccccCc
Confidence 111 113444442100000 0000000 0 000011111111111 11234899999999999
Q ss_pred HHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHH
Q 039402 1395 RVLLKRSKILMLDEATASVDTATDNLIQQTLRQ 1427 (1496)
Q Consensus 1395 RALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~ 1427 (1496)
+....++.+|+|||... +++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999987 799988888888875
No 296
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=6e-10 Score=126.40 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=98.2
Q ss_pred EEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEE
Q 039402 1246 IDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSI 1325 (1496)
Q Consensus 1246 I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1325 (1496)
.+++++...|.. +.+++++++++++| ++|+|++|+|||||++++.+... .|.|.++|.++........+++++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 456677766642 46899999999999 99999999999999999999875 7999999988765555556677888
Q ss_pred Eccccc-ccc-cchhhccCCCCC--C-----cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHH
Q 039402 1326 IPQDPV-MFE-GTVRSNLDPLEE--S-----TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRV 1396 (1496)
Q Consensus 1326 IpQdp~-LF~-gTIR~NLdp~~~--~-----sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1396 (1496)
++|+.. .+. -++.+|+|-+.. . .+++..+.+ ..+. ..+||||+|+..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888763 332 356677752211 0 111221211 1111 1357899999999999
Q ss_pred HccCCCEEEEEcCCC
Q 039402 1397 LLKRSKILMLDEATA 1411 (1496)
Q Consensus 1397 LLr~~~ILiLDEaTs 1411 (1496)
+..+|++ ||++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788764
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=7.8e-08 Score=103.15 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEE----------ECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQIL----------IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~----------IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
.+|+.++|+|+||||||||++.|.+.+++ ..|.|. +||++...++.+.+++. ++|+.+++.+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36899999999999999999999998863 344443 57888888888888774 57899999999999
Q ss_pred ccCCCCCCcHHHHHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALD 1357 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~ 1357 (1496)
|.- ..+++++.++++
T Consensus 80 n~y---g~~~~~i~~~l~ 94 (180)
T 1kgd_A 80 AMY---GTKLETIRKIHE 94 (180)
T ss_dssp EEE---EEEHHHHHHHHH
T ss_pred ccc---cccHHHHHHHHH
Confidence 952 124566666665
No 298
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.32 E-value=6e-07 Score=110.60 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=101.1
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHH------------
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDN------------ 700 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eN------------ 700 (1496)
-+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-.- ..+.+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-----~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-----ENVAIFSLEMSA--QQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-----CCEEEEESSSCH--HHHHHHHHHHHHTCCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEEECCCCH--HHHHHHHHHHHcCCCHHH
Confidence 3568888877999999999999999999999999987765444 134555433110 011111
Q ss_pred hccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEecCCCCCCHH--
Q 039402 701 ILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY--QDSDIYLFDDPFSAVDAH-- 776 (1496)
Q Consensus 701 I~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~--~~~~illLDep~saLD~~-- 776 (1496)
+..| .++++.+.++.++.. .+...+ -.+.+ ..++|++|.+ +.||++. .+|+++++|+++.-.++.
T Consensus 263 l~~g-~l~~~~~~~~~~a~~---~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 263 LRTG-KLTPEDWGKLTMAMG---SLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTS-CCCHHHHHHHHHHHH---HHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HhcC-CCCHHHHHHHHHHHH---HHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 2112 234444444443321 122111 11222 3478999886 5667665 689999999999887532
Q ss_pred ------HHHHHHHHHHHHHh--CCcEEEEEcc---------C--cC--------cccc-CCEEEEEeCCeE
Q 039402 777 ------TGSHLFQEVLLGLL--SSKTVIYVTH---------Q--VE--------FLPA-ADLILVMKDGKI 819 (1496)
Q Consensus 777 ------~~~~i~~~~~~~~~--~~~tvilvtH---------~--~~--------~l~~-~d~i~~l~~G~i 819 (1496)
....+.+. ++.+. .+.+||+++| + +. .+.+ ||.|+.|..++.
T Consensus 332 ~~~~~~~i~~i~~~-Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRS-LKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHH-HHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHH-HHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 11223222 22222 3789999999 2 22 3443 999999986543
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.28 E-value=1.4e-07 Score=102.94 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC-------------eeEEEccCCccCCC-cHHHHhc
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------TKAYVAQSPWIQSG-KIEDNIL 702 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g-------------~~~yv~Q~~~i~~~-ti~eNI~ 702 (1496)
|+++++|++++|+||||||||||+++|+|.++ .+.+.+ .++|++|++..+.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999975 344433 24688888765543 4555544
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.27 E-value=9e-09 Score=122.80 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
..+|+++++++++|+.++|+|++|||||||+++|.+.. +|++... +.. .+.++..++++||.+.+| .+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~---~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLP---LDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSC---TTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ecc---chhHHHHHHHhcchhHHH----HH
Confidence 35899999999999999999999999999999999864 6777651 111 122344588899987653 34
Q ss_pred ccCCCCC---------C--cHHHHHHHHHHc---CCcHHHHhccCCccc-----ccccCCCCCCchHHHHHHHHHHHccC
Q 039402 1340 NLDPLEE---------S--TDEQIWEALDKC---QLGDEVRKKEGKLDS-----KVTENGENWSMGQRQLVCLGRVLLKR 1400 (1496)
Q Consensus 1340 NLdp~~~---------~--sd~eI~~aL~~~---~L~~~i~~lp~gLdt-----~v~e~G~nLS~GQrQll~LARALLr~ 1400 (1496)
+++.... + ++..+.+.++-. .+. .+.|+.++. .+.++-..+++|.+||+..+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 4443221 0 112233333210 000 011111111 23345566899999999998888899
Q ss_pred CCEEE-EEcCCC
Q 039402 1401 SKILM-LDEATA 1411 (1496)
Q Consensus 1401 ~~ILi-LDEaTs 1411 (1496)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99888 999986
No 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.27 E-value=1.5e-07 Score=103.13 Aligned_cols=52 Identities=31% Similarity=0.347 Sum_probs=43.9
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD 1342 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd 1342 (1496)
|+-=++++|+.|||+|++||||||+++.|.+.++ .+.+++||++++++ +|+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~ 64 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIE 64 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhh
Confidence 3445688999999999999999999999999874 48899999999986 5654
No 302
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.24 E-value=4.1e-07 Score=98.26 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=73.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC-----------CccEEEEcCeeEEE--ccCCcc--CCCcHHHHh------ccCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK-----------ISGTLKLCGTKAYV--AQSPWI--QSGKIEDNI------LFGKE 706 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~-----------~~G~i~~~g~~~yv--~Q~~~i--~~~ti~eNI------~~g~~ 706 (1496)
.++|+|++|||||||++.+.|...+ .+|+|.++|..--+ ...+.. +...+.... ++-.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57888888853211 111111 111111111 11111
Q ss_pred -CCHHHHHHHHHHhchhhHHHhc-cCCC-cccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 707 -MNRERYNAVLDACSLKKDLEIL-SFGD-QTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 707 -~~~~~~~~v~~~~~l~~d~~~l-~~g~-~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.+...++.+.... +.+... +... --.++.+ ..|..-.++++..||++..+|++.++| +||+|......+++
T Consensus 111 ~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~ 184 (191)
T 1oix_A 111 IAKHLTYENVERWL---KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHH---HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHH
Confidence 1222222111100 001100 0000 0112222 122222234578899999999999999 99999999999987
Q ss_pred HHHH
Q 039402 784 EVLL 787 (1496)
Q Consensus 784 ~~~~ 787 (1496)
.+.+
T Consensus 185 ~l~~ 188 (191)
T 1oix_A 185 TILT 188 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.22 E-value=4.5e-09 Score=120.94 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCc-cC-CCcH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPW-IQ-SGKI 697 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~-i~-~~ti 697 (1496)
..+++++++++++| ++|+||+|||||||+++|.|+.. .|.+.+++. +++++|.+. .. .-++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 35789999999999 99999999999999999999986 788887652 234444432 11 1244
Q ss_pred HHHh-ccCCCCC------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 039402 698 EDNI-LFGKEMN------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDI 763 (1496)
Q Consensus 698 ~eNI-~~g~~~~------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 763 (1496)
.||| .++.... .+...+.+. +-...|||||+||+.+|+|+..+|++
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~--------------------~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLN--------------------QLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHH--------------------HHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred hhhhHhhhcccccccCCcchHHHHHHH--------------------HHHHHHhCCCCCCCEEEEEecCCchh
Confidence 4555 2221110 000111111 11135899999999999999999976
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.22 E-value=2.8e-07 Score=100.05 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CccEEEECCeeCC-----CCChHHHhcccEEEccccc--c--cc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIV-----EP------AAGQILIDGIDIS-----LIGLHDLRSRLSIIPQDPV--M--FE 1334 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~-----ep------~~G~I~IDG~dI~-----~i~l~~LR~~i~iIpQdp~--L--F~ 1334 (1496)
|++|+|++|||||||++.|.+.. .| ..|+|.+||.++. .-+.+..|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 79999999999999999999974 23 3689999997652 2233334433333333321 1 22
Q ss_pred cchhhccCCCCCCcHHHH---HHHHHHc-CCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCC
Q 039402 1335 GTVRSNLDPLEESTDEQI---WEALDKC-QLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEAT 1410 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI---~~aL~~~-~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaT 1410 (1496)
.+-+ .+-+++ .+.+... .-..-+.-.-.+.|-. + -...+ ...||++.++|+++++| |
T Consensus 87 ~~~~--------~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~--~-~~~~~------~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKH--------LTYENVERWLKELRDHADSNIVIMLVGNKSDLR--H-LRAVP------TDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCH--------HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG--G-GCCSC------HHHHHHHHHHTTCEEEE--C
T ss_pred CcCH--------HHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc--c-ccCcC------HHHHHHHHHHcCCeEEE--E
Confidence 1111 011111 1112111 0000000001112210 0 01112 34589999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 039402 1411 ASVDTATDNLIQQTLRQH 1428 (1496)
Q Consensus 1411 sslD~~Td~~Iq~~I~~~ 1428 (1496)
|++|...-..+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999998877776666543
No 305
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.20 E-value=3e-06 Score=100.45 Aligned_cols=144 Identities=21% Similarity=0.312 Sum_probs=83.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
-+++|+++.|.||+|||||||+..++....+.. +.+.|+.-+.. .+.. + .+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~~---------------~~~~-~---a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEHA---------------LDPE-Y---AKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSCC---------------CCHH-H---HHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCCC---------------cCHH-H---HHHcCC
Confidence 478999999999999999999988887665433 34556654421 1111 1 111221
Q ss_pred hhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEecCCCCC----------CHH---HHHHH---HH
Q 039402 722 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD--SDIYLFDDPFSAV----------DAH---TGSHL---FQ 783 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~illLDep~saL----------D~~---~~~~i---~~ 783 (1496)
. .+.+. +-. ..++ .|-+.+++++..+ |+++++|+|++.+ |++ ..+.+ +.
T Consensus 112 ~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 112 D--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp C--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred C--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 1 11110 111 1122 3446678888754 9999999999998 331 11112 22
Q ss_pred HHHHHH-hCCcEEEEEccCcCc----------------cc-cCCEEEEEeCCeEEEec
Q 039402 784 EVLLGL-LSSKTVIYVTHQVEF----------------LP-AADLILVMKDGKITQAG 823 (1496)
Q Consensus 784 ~~~~~~-~~~~tvilvtH~~~~----------------l~-~~d~i~~l~~G~i~~~G 823 (1496)
.+.... ..+.|||+++|-..- +. .||.++.++.+++...|
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 222111 238899999996531 33 38888888877665444
No 306
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=6.9e-09 Score=117.63 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=71.6
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-------------eEEEccCCc-cC-CCcH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-------------KAYVAQSPW-IQ-SGKI 697 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-------------~~yv~Q~~~-i~-~~ti 697 (1496)
..+++++++++++| ++|+||+|||||||+++|.|+.. .|.+.++|. +.+++|.+. .. .-++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 35789999999999 99999999999999999999886 688887652 123444321 11 1234
Q ss_pred HHHh-ccCCCCC------HHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 698 EDNI-LFGKEMN------RERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 698 ~eNI-~~g~~~~------~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
.||| .++.... .+...+.+ .+-...|||||+||+.+|+|+..+|++ +|+++
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~--------------------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTL--------------------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EETHHHHHC---------CHHHHHHH--------------------HHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ehhhhhhhcccCccccccchHHHHHH--------------------HHHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 4444 2221100 00001111 111235889999999999999999876 45443
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.15 E-value=3e-07 Score=102.62 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHh-cCCCC
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPK 672 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il-G~~~~ 672 (1496)
....+++||++++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99843
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.12 E-value=4.4e-07 Score=115.80 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCc-cEEEEcC--------eeEEEccCC-------------
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS-GTLKLCG--------TKAYVAQSP------------- 690 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~-G~i~~~g--------~~~yv~Q~~------------- 690 (1496)
..+++++++.+++|+.++|+||+|+|||||+++|.|.+++.. |.+.+++ .++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468899999999999999999999999999999999999887 6776644 356776643
Q ss_pred ---------ccC-CCcHHHHhccCCCCCHHHHHHHH--HHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 691 ---------WIQ-SGKIEDNILFGKEMNRERYNAVL--DACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 691 ---------~i~-~~ti~eNI~~g~~~~~~~~~~v~--~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
|.+ ..++.+|+..+..-.... .++ ......+-+..... -......+|+|++|++..++...
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~--~~v~~~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKA--PFIDATGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSC--CEEECTTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHH
T ss_pred cchhhhhhcccccccccccceeeccccCCCC--CEEEcCCCCHHhcCceEEe-----chhhcCCccccccccccCceeee
Confidence 221 123333443321100000 000 00000000000000 01222459999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHH
Q 039402 759 QDSDIYLFDDPFSAVDAHTGSHLFQ 783 (1496)
Q Consensus 759 ~~~~illLDep~saLD~~~~~~i~~ 783 (1496)
.++.+++|||+-. |++.....+.+
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHHH
Confidence 9999999999987 78887666643
No 309
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.11 E-value=2.3e-08 Score=118.20 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=54.9
Q ss_pred CCceeeeeEEEeCC-------cEEEEEecCCCcHHHHHHHHhcCC----CCCccEEEEc-------------CeeEEEcc
Q 039402 633 NPTLKDINLKVFHG-------MRVAVCGTVGSGKSSLLSCILGEV----PKISGTLKLC-------------GTKAYVAQ 688 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G-------~~~~ivG~~GsGKSTLl~~ilG~~----~~~~G~i~~~-------------g~~~yv~Q 688 (1496)
+.+++++++.+++| +.++++||+|+|||||+++|+|++ .+++|.+..+ +.+.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788999999877 889999999999999999999998 6677766432 34788888
Q ss_pred CCccCCCcHHHHhc
Q 039402 689 SPWIQSGKIEDNIL 702 (1496)
Q Consensus 689 ~~~i~~~ti~eNI~ 702 (1496)
...+.. ++.|++.
T Consensus 111 ~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 111 IHRLNK-AVEELLY 123 (334)
T ss_dssp GGGCCH-HHHHHHH
T ss_pred hhhcCH-HHHHHHH
Confidence 776654 6777664
No 310
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.08 E-value=9.3e-07 Score=95.19 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=49.7
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC-------------CCccEEEEcCeeEEEccCCccC-----------CCcHHHHh
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP-------------KISGTLKLCGTKAYVAQSPWIQ-----------SGKIEDNI 701 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~-------------~~~G~i~~~g~~~yv~Q~~~i~-----------~~ti~eNI 701 (1496)
|++++|+||||||||||+++|+|.++ |..|++ +| ..|.+|++..+ +.++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 77 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NG-KDYNFVSVDEFKSMIKNNEFIEWAQFSGNY 77 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BT-TTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CC-eeeeecCHHHHHHHHhhcceeeEEEEecee
Confidence 57899999999999999999999998 666664 44 34666654322 12222222
Q ss_pred ccCCCCCHHHHHHHHHHh---chh------hHHHh-----------cc---CCCcccccCCCCCCChHHHHHHHHHHHHc
Q 039402 702 LFGKEMNRERYNAVLDAC---SLK------KDLEI-----------LS---FGDQTVIGERGINLSGGQKQRIQIARALY 758 (1496)
Q Consensus 702 ~~g~~~~~~~~~~v~~~~---~l~------~d~~~-----------l~---~g~~t~ig~~g~~LSGGQkqRv~LARAl~ 758 (1496)
+|.+ .+..+++++.. -++ ..+.. .| ......+.++|.+-....++|++-|+.-.
T Consensus 78 -yg~~--~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~ 154 (186)
T 3a00_A 78 -YGST--VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 154 (186)
T ss_dssp -EEEE--HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC-----------------------------
T ss_pred -ccCc--HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 2221 23344444331 110 00111 01 12233445677777788899999998754
Q ss_pred -----cCCCEEEEec
Q 039402 759 -----QDSDIYLFDD 768 (1496)
Q Consensus 759 -----~~~~illLDe 768 (1496)
..+|.+|..|
T Consensus 155 ~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 155 AYAETGAHDKVIVND 169 (186)
T ss_dssp ----CCCCSEEEECS
T ss_pred HhhcccCCcEEEECc
Confidence 5678887776
No 311
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.05 E-value=3.1e-06 Score=100.88 Aligned_cols=138 Identities=21% Similarity=0.193 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCccEEEECCeeCCCCChHHHhcccEEEcccccc----cccchhh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVE-----------PAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM----FEGTVRS 1339 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~e-----------p~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L----F~gTIR~ 1339 (1496)
+|+|||++|||||||++.|.+... |..|+|.++|.++. +....|++.|.|.- |..|+.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999765 67899999997652 22345666654431 2223221
Q ss_pred -----cc----CCCCCC--cHHH---HHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHH----HHH-ccC
Q 039402 1340 -----NL----DPLEES--TDEQ---IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLG----RVL-LKR 1400 (1496)
Q Consensus 1340 -----NL----dp~~~~--sd~e---I~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LA----RAL-Lr~ 1400 (1496)
++ |..+.. .+++ +.+.|+..++.+ .| --.|...-..+|+|++|++.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 11 111111 1222 234444443321 11 1122334445788888888877 666 444
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhc
Q 039402 1401 SKILMLDEATASVDTATDNLIQQTLRQHF 1429 (1496)
Q Consensus 1401 ~~ILiLDEaTsslD~~Td~~Iq~~I~~~f 1429 (1496)
+++ +|||++|.+.-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 454 8999999988877777776643
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.04 E-value=9.2e-07 Score=96.38 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=52.2
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccc-----------cccc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVM-----------FEGT 1336 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L-----------F~gT 1336 (1496)
++|++|+.++|+|++||||||+++.|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977655 222 22222211 1123457888887643 3344
Q ss_pred hhhccCCCCCCcHHHHHHHHHH
Q 039402 1337 VRSNLDPLEESTDEQIWEALDK 1358 (1496)
Q Consensus 1337 IR~NLdp~~~~sd~eI~~aL~~ 1358 (1496)
++.|+. ....+++.++++.
T Consensus 78 ~~~~~~---g~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNYY---GTPVQYVKDTMDE 96 (207)
T ss_dssp ETTEEE---EEEHHHHHHHHHT
T ss_pred ECCeec---CCCHHHHHHHHHc
Confidence 444431 1245667666653
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.03 E-value=1.5e-06 Score=92.99 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=34.3
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999988776555
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.03 E-value=1.5e-07 Score=104.33 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC---CCCccEEEE--------cCe--------------eEEEccCC------ccC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV---PKISGTLKL--------CGT--------------KAYVAQSP------WIQ 693 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~---~~~~G~i~~--------~g~--------------~~yv~Q~~------~i~ 693 (1496)
.+.+++|+|++||||||+.+.|.+.+ .++.|.+.. +|. +++++|++ .+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999998876 677787765 342 35666654 223
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHhccCCCcccc-cCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 694 SGKIEDNILFGKEMNRERYNAVLDACSLKKDLEILSFGDQTVI-GERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 694 ~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~i-g~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
..++.+++. .+...+++..+...+.+.....+..+.+ .++|.-++|+ .++++++.++++.++.|+.
T Consensus 84 ~~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 445555542 3455566667777666655433333333 3456778886 4666788899999998874
No 315
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.02 E-value=8.1e-06 Score=100.22 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=76.5
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
|..++++++.+++| +.|+|++|+|||||++++.+.... |+ +.-+..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHHH
Confidence 34677888888887 999999999999999999984310 00 0001111
Q ss_pred ccCCCCCCcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCC--------
Q 039402 1340 NLDPLEESTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATA-------- 1411 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs-------- 1411 (1496)
....+ ++ .+++++|-.+++|....|.||++||+.+
T Consensus 85 ~~~~~-------------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 85 FVELF-------------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TTTCC-------------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HHHHH-------------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 11100 11 2578888889999989999999999943
Q ss_pred --CCCHHHHHHHHHHHHHh-----cCCcEEEEEccCcchh
Q 039402 1412 --SVDTATDNLIQQTLRQH-----FSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1412 --slD~~Td~~Iq~~I~~~-----f~~~TVI~IAHRl~ti 1444 (1496)
+.|.+.++.+.+.+.+. -.+..||..||+.+.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666666666543 1356889999998654
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.01 E-value=2.9e-08 Score=118.46 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=81.8
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE-c----C---eeEEEccCCccCCCcHHHHhccCC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL-C----G---TKAYVAQSPWIQSGKIEDNILFGK 705 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~-~----g---~~~yv~Q~~~i~~~ti~eNI~~g~ 705 (1496)
.+++++++.+++|+.++|+||+|||||||+++|.|. .+|.+.. + + .+++++|.+.+ +.|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV----VFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE----EETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH----HHHHHHHHH
Confidence 578999999999999999999999999999999985 4677665 2 1 24566666532 233333322
Q ss_pred C----C---CH----HHHHHHHHH---hchhh----HH-HhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE-
Q 039402 706 E----M---NR----ERYNAVLDA---CSLKK----DL-EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYL- 765 (1496)
Q Consensus 706 ~----~---~~----~~~~~v~~~---~~l~~----d~-~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ill- 765 (1496)
. . +. ..+...++. ..+.. .+ ..++.| .+.++...+++|++||+..+.+++.+|++++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1 0 10 011111110 00000 00 011111 2345667799999999999988999999988
Q ss_pred EecCCC
Q 039402 766 FDDPFS 771 (1496)
Q Consensus 766 LDep~s 771 (1496)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999986
No 317
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.00 E-value=6.4e-07 Score=101.05 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=36.0
Q ss_pred eEEEEeE-EeEeCCCCCccceeeeEEeeC---CcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1245 KIDLLDL-QVRYAPQMPLVLQGISCTFPG---GEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1245 ~I~f~nv-s~~Y~~~~~~vLk~iS~~I~~---GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.++++|+ +++|. +...+|+|+||+|++ |++|+|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99993 335699999999999 9999999999999999999999865
No 318
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.00 E-value=1.6e-06 Score=92.67 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=64.5
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe--eCCCCCh----HHHhcccEEEcccccc-c--c
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI--DISLIGL----HDLRSRLSIIPQDPVM-F--E 1334 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~--dI~~i~l----~~LR~~i~iIpQdp~L-F--~ 1334 (1496)
+++++.+.+| .++|+|+||||||||+.+|..+..+..|+..-.+. ++-.-+. ...+..+.++.|+|.- | .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887765433221 1111110 0235679999998631 1 1
Q ss_pred ---cchhhccCCC---------CCCcHHHHHHHHHHcCCc
Q 039402 1335 ---GTVRSNLDPL---------EESTDEQIWEALDKCQLG 1362 (1496)
Q Consensus 1335 ---gTIR~NLdp~---------~~~sd~eI~~aL~~~~L~ 1362 (1496)
-+|+..+... ...+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 1333333211 123578888889888775
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.99 E-value=1e-06 Score=96.02 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=45.4
Q ss_pred eEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-HhcccEEEccccccc
Q 039402 1267 SCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLSIIPQDPVMF 1333 (1496)
Q Consensus 1267 S~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~iIpQdp~LF 1333 (1496)
.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+.+.++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 4667899999999999999999999999987 999999988752 222 233578888886544
No 320
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.99 E-value=1e-06 Score=108.56 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=83.5
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhc--CCCCCccEEEEcCee--EE----EccCCccCCCcHHHHhccCCCCCH
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK--AY----VAQSPWIQSGKIEDNILFGKEMNR 709 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~~~G~i~~~g~~--~y----v~Q~~~i~~~ti~eNI~~g~~~~~ 709 (1496)
.+++++.+|..+.|.|++||||||++++|+. .+..+.|++.+.+.. +. ...-|++.. ++.+ |.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vvt--------d~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVVT--------DM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCBC--------SH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eeec--------CH
Confidence 4778889999999999999999999999886 445555666543211 00 001122211 1111 12
Q ss_pred HHHHHHHHHhc--hhhHHHhcc-CCCcccccC---CCCCCChHHHHHH----------HHHHHHccCCC-EEEEecCCCC
Q 039402 710 ERYNAVLDACS--LKKDLEILS-FGDQTVIGE---RGINLSGGQKQRI----------QIARALYQDSD-IYLFDDPFSA 772 (1496)
Q Consensus 710 ~~~~~v~~~~~--l~~d~~~l~-~g~~t~ig~---~g~~LSGGQkqRv----------~LARAl~~~~~-illLDep~sa 772 (1496)
+...++++.+. +++--+.+. .|....-+- ....+||||+||. .+|+++...|. ++++||+.+.
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 22122222110 000011110 111100000 1124788888753 35677778898 8999999998
Q ss_pred CCHHH--HHHHHHHHHH-HHhCCcEEEEEccCcC
Q 039402 773 VDAHT--GSHLFQEVLL-GLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 773 LD~~~--~~~i~~~~~~-~~~~~~tvilvtH~~~ 803 (1496)
+|... ...++..+.+ +...|.++|++||+++
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 87432 1222222222 2223789999999987
No 321
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.97 E-value=1.6e-06 Score=101.35 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=56.4
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCCh----HHH-----hcccEEE-ccc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGL----HDL-----RSRLSII-PQD 1329 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~L-----R~~i~iI-pQd 1329 (1496)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 4578899999999999999999999999999999999999999999999865542 344 5668888 554
No 322
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.94 E-value=7.9e-06 Score=97.35 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC-----------CCccEEEEcCeeEEEccCCcc-C----------CCcH-----HHH
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP-----------KISGTLKLCGTKAYVAQSPWI-Q----------SGKI-----EDN 700 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~-----------~~~G~i~~~g~~~yv~Q~~~i-~----------~~ti-----~eN 700 (1496)
.++|+|++|+|||||++.|.|... ++.|.+.++|..-.+.+.|.+ . ..|. .|+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 499999999999999999999875 567899998854333333322 1 1111 123
Q ss_pred hccCCCCC-HH-HHHHHHHHhchhhHHHhcc--CCCcccccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEecCCC
Q 039402 701 ILFGKEMN-RE-RYNAVLDACSLKKDLEILS--FGDQTVIGERGINLSGGQKQRIQIA----RAL-YQDSDIYLFDDPFS 771 (1496)
Q Consensus 701 I~~g~~~~-~~-~~~~v~~~~~l~~d~~~l~--~g~~t~ig~~g~~LSGGQkqRv~LA----RAl-~~~~~illLDep~s 771 (1496)
+++-.+.. .. ...+.++. ..+.++.+. ....-.++.+...+|+|++||+.++ +++ ..++++ +|+|
T Consensus 261 il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred EEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 33321111 11 01111111 011122221 1112344666677898999988887 666 444454 7999
Q ss_pred CCCHHHHHHHHHHHHH
Q 039402 772 AVDAHTGSHLFQEVLL 787 (1496)
Q Consensus 772 aLD~~~~~~i~~~~~~ 787 (1496)
|+|......+++.+..
T Consensus 335 A~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999988888876544
No 323
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.93 E-value=1.3e-05 Score=86.76 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 039402 751 IQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGL 789 (1496)
Q Consensus 751 v~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~ 789 (1496)
...||++..+|++.++| +||+|......+++.+.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45699999999999999 99999999999988765543
No 324
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=1.2e-05 Score=98.81 Aligned_cols=114 Identities=19% Similarity=0.285 Sum_probs=73.3
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
.++++++.+++| +.|+||+|+|||||++++.++.... .-++. ..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---------f~~is---------~~~~~------------- 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---------FFHIS---------GSDFV------------- 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---------EEEEE---------GGGTT-------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---------eeeCC---------HHHHH-------------
Confidence 566777778888 8899999999999999999965210 11110 00000
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC----------CCCHHHHHHHHHH
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS----------AVDAHTGSHLFQE 784 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s----------aLD~~~~~~i~~~ 784 (1496)
+. .+| .|++++|-.+++|....|.|+++||+-+ +.|....+ ....
T Consensus 87 -----------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~-~l~~ 141 (476)
T 2ce7_A 87 -----------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ-TLNQ 141 (476)
T ss_dssp -----------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHH-HHHH
T ss_pred -----------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHH-HHHH
Confidence 00 011 2788999999999999999999999943 55554433 3334
Q ss_pred HHHHH-----hCCcEEEEEccCcCccc
Q 039402 785 VLLGL-----LSSKTVIYVTHQVEFLP 806 (1496)
Q Consensus 785 ~~~~~-----~~~~tvilvtH~~~~l~ 806 (1496)
++..+ ..+..||.+||+.+.++
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 44322 23568888999986543
No 325
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=5.4e-06 Score=98.93 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=35.3
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--ccCCCccEEEECCe
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--IVEPAAGQILIDGI 1309 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--l~ep~~G~I~IDG~ 1309 (1496)
.+|++++++++ +|+|||++|||||||+++|.| +.++.+|.++-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47999999998 999999999999999999999 66777776654443
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.87 E-value=7.8e-07 Score=96.93 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=45.0
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE--EECCeeCC
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI--LIDGIDIS 1312 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I--~IDG~dI~ 1312 (1496)
.+.+..++..++|+.|+|+|++||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 36678888889999999999999999999999999987 78988 99986553
No 327
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.86 E-value=2.2e-05 Score=93.53 Aligned_cols=46 Identities=33% Similarity=0.393 Sum_probs=35.3
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhc--CCCCCccEEEEcC
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCG 681 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG--~~~~~~G~i~~~g 681 (1496)
..+|++++++++ .++|+|++|||||||+++|+| .+++.+|.++..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 357899999998 899999999999999999999 5677777665443
No 328
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.86 E-value=6.6e-07 Score=110.51 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=93.2
Q ss_pred EEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEE
Q 039402 1247 DLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSII 1326 (1496)
Q Consensus 1247 ~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iI 1326 (1496)
+++++...|.. +.+++++++++++| +.|+|++|+|||||++++.+... .|.|.++|.++........++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 45555554532 45899999999999 99999999999999999999875 78999999998776555666777778
Q ss_pred ccccc-cccc-chhhccCCCCC-------CcHHHHHHHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHH
Q 039402 1327 PQDPV-MFEG-TVRSNLDPLEE-------STDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVL 1397 (1496)
Q Consensus 1327 pQdp~-LF~g-TIR~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1397 (1496)
+|+.. ...+ .+-+++|-... ...++..+.+.+ .+. .+||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEEe
Confidence 88764 2333 55677763321 012222222211 111 1466777777777777
Q ss_pred ccCCCEEEEEcCCC
Q 039402 1398 LKRSKILMLDEATA 1411 (1496)
Q Consensus 1398 Lr~~~ILiLDEaTs 1411 (1496)
..+|++ ||||.-
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 777776 777764
No 329
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.86 E-value=5.7e-06 Score=108.12 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=85.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe-eEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT-KAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~-~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
+..|+.++|+||+||||||++..++++..+..| +|. +.++ | |. .... .+.++++.+..+.
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl-~-P~---r~La----------~q~~~~l~~~~~~ 166 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACT-Q-PR---RVAA----------MSVAQRVAEEMDV 166 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEE-E-SC---HHHH----------HHHHHHHHHHTTC
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEec-C-ch---HHHH----------HHHHHHHHHHhCC
Confidence 567899999999999999999988877655443 122 2222 1 10 0000 0111111111111
Q ss_pred hh--HHH-hccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE
Q 039402 722 KK--DLE-ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVLLGLLSSKTVIY 797 (1496)
Q Consensus 722 ~~--d~~-~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~~~~~~~~tvil 797 (1496)
.. ... .....+.+.-+.+..-+|+|+.+|..++++++.+++++++|||.. ++|.+....+.+.+.......+++++
T Consensus 167 ~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~ 246 (773)
T 2xau_A 167 KLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246 (773)
T ss_dssp CBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred chhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEE
Confidence 00 000 000001111123456789999999999999999999999999997 89987665555554432223467777
Q ss_pred -EccCcCccc
Q 039402 798 -VTHQVEFLP 806 (1496)
Q Consensus 798 -vtH~~~~l~ 806 (1496)
+||+.+.+.
T Consensus 247 SAT~~~~~l~ 256 (773)
T 2xau_A 247 SATLDAEKFQ 256 (773)
T ss_dssp ESCSCCHHHH
T ss_pred eccccHHHHH
Confidence 599876543
No 330
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.80 E-value=2.4e-05 Score=93.20 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHH
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIW 1353 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~ 1353 (1496)
-++++||.+|+|||||++.|.+.. + .+++.+..+.+ ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 489999999999999999998854 2 12222222211 11233332211
Q ss_pred HHHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCc
Q 039402 1354 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLD-EATASVDTATDNLIQQTLRQHFSDC 1432 (1496)
Q Consensus 1354 ~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLD-EaTsslD~~Td~~Iq~~I~~~f~~~ 1432 (1496)
...+. ..|+-.+. ....+|+|++|.+. +.+...++-++|+| ++++++|.+....+.+.+.+.+.++
T Consensus 215 ----~~~l~----Dt~G~~~~----~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~ 281 (357)
T 2e87_A 215 ----RYQII----DTPGLLDR----PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281 (357)
T ss_dssp ----EEEEE----ECTTTSSS----CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTS
T ss_pred ----eEEEE----eCCCcccc----chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCC
Confidence 01111 12222221 22357899999876 55555666789999 9999999988887878887777688
Q ss_pred EEEEEc--cCcch
Q 039402 1433 TVLTIA--HRITS 1443 (1496)
Q Consensus 1433 TVI~IA--HRl~t 1443 (1496)
.+|+|. |++..
T Consensus 282 piilV~NK~Dl~~ 294 (357)
T 2e87_A 282 PFLVVINKIDVAD 294 (357)
T ss_dssp CEEEEECCTTTCC
T ss_pred CEEEEEECcccCC
Confidence 899998 77643
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.80 E-value=1.6e-05 Score=93.47 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=31.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc-CC------CccEEEECCe
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV-EP------AAGQILIDGI 1309 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~-ep------~~G~I~IDG~ 1309 (1496)
-+++|+.+.|.|++|||||||+..+..-. .| ..+.++||..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2345666653
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.80 E-value=2.3e-05 Score=91.96 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=72.0
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYN 713 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~ 713 (1496)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++....... +.++|++ .++..+.+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------~~Vl~fS-----------------lEms~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------RGVAVFS-----------------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CEEEEEE-----------------SSSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CeEEEEe-----------------CCCCHHHHH
Confidence 45666555689999999999999999999988876544322 2344433 344444443
Q ss_pred HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 039402 714 AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVD 774 (1496)
Q Consensus 714 ~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD 774 (1496)
.-+-+....-++..+.. ..||+++++|+..|...+.++++++.|+|...+|
T Consensus 91 ~Rlls~~~~v~~~~l~~----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 91 LRALSDLTSINMHDLES----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHHCCCHHHHHH----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHhhCCCHHHHhc----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 32222111112222211 2699999999999999999999999999865544
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.78 E-value=5.4e-06 Score=90.94 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=58.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEEE----------ECCeeCCCCChHHHhcccEEEcccccccccchhh
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQIL----------IDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRS 1339 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I~----------IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~ 1339 (1496)
++|+.++|+||||||||||++.|.+.++| ..+.+. .||++...++...+++.+ .|+.+++.+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 467676667777777665 6777888888777
Q ss_pred ccCCCCCCcHHHHHHHHH
Q 039402 1340 NLDPLEESTDEQIWEALD 1357 (1496)
Q Consensus 1340 NLdp~~~~sd~eI~~aL~ 1357 (1496)
|.- ..+.+.+.++++
T Consensus 83 ~~y---g~~~~~i~~~l~ 97 (208)
T 3tau_A 83 NYY---GTPLEYVEEKLA 97 (208)
T ss_dssp EEE---EEEHHHHHHHHH
T ss_pred ccC---CCcHHHHHHHHH
Confidence 742 123455555554
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.78 E-value=1.3e-06 Score=97.37 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=51.7
Q ss_pred eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC------ChHH----HhcccEEEcccccccc
Q 039402 1266 ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI------GLHD----LRSRLSIIPQDPVMFE 1334 (1496)
Q Consensus 1266 iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i------~l~~----LR~~i~iIpQdp~LF~ 1334 (1496)
-+++.++|+.|+|+|++||||||++++|.++ +|+|.++|.|+... .+.+ .++++++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3456689999999999999999999999998 79999999886432 2221 2567899999987764
No 335
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.77 E-value=3.1e-05 Score=91.49 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=46.6
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE-EECCeeCCCCChHHHhcccEEEccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDGIDISLIGLHDLRSRLSIIPQDPV 1331 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I-~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1331 (1496)
-+++|+.+.|.|++|||||||+..+.+...+.+|.+ +||+.+... ....+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 478999999999999999999999999888777864 777754332 225567787776644
No 336
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=3.1e-05 Score=93.54 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=96.2
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHH-HhcccEEE
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHD-LRSRLSII 1326 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~iI 1326 (1496)
.++++..|.+.. ++++++ +|+.++++|++||||||++..|.+.+.+.+|++.+.+.|+.....++ |+..
T Consensus 79 ~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 79 YEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 344555564331 567777 89999999999999999999999999999999999998887654433 2210
Q ss_pred cccccccccchhhccCCCC---CCcHHHH-HHHHHHcCCcHHHHhccCCcccccccCCCCCCc---hHHHHHHHHHHHcc
Q 039402 1327 PQDPVMFEGTVRSNLDPLE---ESTDEQI-WEALDKCQLGDEVRKKEGKLDSKVTENGENWSM---GQRQLVCLGRVLLK 1399 (1496)
Q Consensus 1327 pQdp~LF~gTIR~NLdp~~---~~sd~eI-~~aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~---GQrQll~LARALLr 1399 (1496)
.-+.|++.+. ..+..++ .++++.+ ..+++|..+-+.+..++. ...++..+++++--
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~~~~l~~~--------~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIRRRVEEKA--------RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHHHHHHHHH--------HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHHHHHHHHH--------HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 0122343211 1223344 3333322 125677666554444432 35677788888865
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcc
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAH 1439 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAH 1439 (1496)
.+-+|++| |+++.|... .+ +..++. -+.|-++++|
T Consensus 212 d~vlLVvD-a~tgq~av~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHH--HH-HHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHH--HH-HHHHhc-CCceEEEEeC
Confidence 55678888 455544432 22 223332 2345566654
No 337
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.71 E-value=2.7e-06 Score=96.30 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=47.6
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHh---cCCCCCccEEE--------EcCe--------------eEEEccC------Ccc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCIL---GEVPKISGTLK--------LCGT--------------KAYVAQS------PWI 692 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~il---G~~~~~~G~i~--------~~g~--------------~~yv~Q~------~~i 692 (1496)
++|++++|+||+||||||++++|. |...+++|.+. .+|. +++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999987 4442 3677754 345
Q ss_pred CCCcHHHHhc
Q 039402 693 QSGKIEDNIL 702 (1496)
Q Consensus 693 ~~~ti~eNI~ 702 (1496)
.+.++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5667777764
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.70 E-value=6.7e-06 Score=89.47 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE--EEcC
Q 039402 625 FSWDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL--KLCG 681 (1496)
Q Consensus 625 ~~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i--~~~g 681 (1496)
++|.. ......+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .++|
T Consensus 5 ~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 5 IKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred Ccccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 34532 23456777888889999999999999999999999999987 67876 6654
No 339
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=1.5e-05 Score=86.67 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=25.0
Q ss_pred CccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1260 PLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.++++||||++++|++|+|+|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999876
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=1.6e-05 Score=86.33 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=24.8
Q ss_pred ecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 627 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
|++++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 6 HHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33345568999999999999999999999999999999999765
No 341
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.65 E-value=1.5e-06 Score=96.56 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=34.4
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCe
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 682 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~ 682 (1496)
++++.+ ++++|+||||||||||+++|.|.++|++|.|.++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 566676 899999999999999999999999999999988874
No 342
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.65 E-value=3.8e-06 Score=94.75 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.0
Q ss_pred cEEEEee-EEEecCCCCCCceeeeeEEEeC---CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 617 ALDIVDG-NFSWDISSHNPTLKDINLKVFH---GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 617 ~i~~~~~-~~~~~~~~~~~~L~~i~l~i~~---G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
.++++|+ +++|+ ++.++|+|+||++++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 99983 246799999999999 9999999999999999999998865
No 343
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.65 E-value=1.6e-05 Score=103.82 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHHHHHHhcCC-cEEEE-EccCcchhcc
Q 039402 1382 NWSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQTLRQHFSD-CTVLT-IAHRITSVID 1446 (1496)
Q Consensus 1382 nLS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~~I~~~f~~-~TVI~-IAHRl~ti~~ 1446 (1496)
-.|.|+.++..++++++.+++++|+|||.. ++|.+.-..+.+.+.+..++ +++++ .||..+.+.+
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 468999999999999999999999999997 89977665555666555555 45555 4887766543
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.63 E-value=1.7e-05 Score=86.51 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEcccccccccchhhccCCCCCCcHHHHHH
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLDPLEESTDEQIWE 1354 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~eI~~ 1354 (1496)
.|||+|++||||||+.+.|.++ |...+|+-+ +.+.+ ..|.. +.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~~-----------------~~~~~----~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VAREV-----------------VAKDS----PLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHHT-----------------TCSSC----HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHHH-----------------ccCCh----HHHHH
Confidence 6999999999999999999883 666666522 21111 11110 11112
Q ss_pred HHHHcCCcHHHHhccCCcccccccCCCCCCchHHHHHHHHHHHccCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 039402 1355 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTV 1434 (1496)
Q Consensus 1355 aL~~~~L~~~i~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TV 1434 (1496)
..+..+. . ...+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+++. ++.++
T Consensus 50 i~~~~g~-----------------~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IVEHFGA-----------------Q-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HHHHHCT-----------------T-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HHHHhCH-----------------H-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 2222111 0 112678899999999888877543222 3345666666666666543 45578
Q ss_pred EEEccCcchh---cccCEEEEEeC
Q 039402 1435 LTIAHRITSV---IDSDLVLLLNH 1455 (1496)
Q Consensus 1435 I~IAHRl~ti---~~~DrIlVL~~ 1455 (1496)
|+-+|.+... ..||++++++.
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 8888877654 45999999974
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.63 E-value=3.3e-05 Score=84.23 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=69.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~ 727 (1496)
+++|+|++||||||+.+.|.+. |...+++ +.+...+.. +. .+.+.+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~-------------d~~~~~~~~--~~-~~~~~~i~~~~-------- 54 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA-------------DVVAREVVA--KD-SPLLSKIVEHF-------- 54 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH-------------HHHHHHTTC--SS-CHHHHHHHHHH--------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch-------------HHHHHHHcc--CC-hHHHHHHHHHh--------
Confidence 6899999999999999999882 4333322 111111111 11 11222222211
Q ss_pred ccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcCc---
Q 039402 728 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVEF--- 804 (1496)
Q Consensus 728 l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--- 804 (1496)
|+. .-.++|+.+|..+++.++.+|+....+ .+.++|...+.+.+ .+.. ..+.++|+.+|.+..
T Consensus 55 ---------g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~-~~~~-~~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 55 ---------GAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQ-KLAE-QTAPYTLFVVPLLIENKL 120 (206)
T ss_dssp ---------CTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHH-HHHT-CCSSEEEEECTTTTTTTC
T ss_pred ---------CHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHH-HHHh-cCCCEEEEEechhhhcCc
Confidence 111 124688999999999999888654333 34456665554432 2221 246688888888754
Q ss_pred cccCCEEEEEe
Q 039402 805 LPAADLILVMK 815 (1496)
Q Consensus 805 l~~~d~i~~l~ 815 (1496)
.+.+|.+++++
T Consensus 121 ~~~~d~vi~l~ 131 (206)
T 1jjv_A 121 TALCDRILVVD 131 (206)
T ss_dssp GGGCSEEEEEE
T ss_pred HhhCCEEEEEE
Confidence 34599999886
No 346
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.63 E-value=9.4e-06 Score=95.24 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=50.3
Q ss_pred cceEEEEeEEeEeCCCCCccce--------------eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQ--------------GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk--------------~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
.|.|+|+||++.|+.. +.+|+ |+++.|.+||+++|+|++|+|||||++.|.|...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 6889999999999765 45888 8999999999999999999999999999999863
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.62 E-value=1.3e-05 Score=87.58 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=41.3
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhcc
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILF 703 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~ 703 (1496)
++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH---hHhhc
Confidence 567899999999999999999999999875 26889999988765 56654
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=5.4e-06 Score=89.79 Aligned_cols=73 Identities=19% Similarity=0.364 Sum_probs=49.7
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC-------------CCccEEEEcCee----------EEEccCCccCCCc
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP-------------KISGTLKLCGTK----------AYVAQSPWIQSGK 696 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-------------~~~G~i~~~g~~----------~yv~Q~~~i~~~t 696 (1496)
|+...+|++++|+||+|||||||++.|++.++ |..|+ ++|.. ..+.|...++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhh
Confidence 45556899999999999999999999999886 55565 45532 1234666777788
Q ss_pred HHHHhccCCCCCHHHHHHHHH
Q 039402 697 IEDNILFGKEMNRERYNAVLD 717 (1496)
Q Consensus 697 i~eNI~~g~~~~~~~~~~v~~ 717 (1496)
+.+| .+|.+ .+..+++++
T Consensus 91 ~~~n-~YGt~--~~~v~~~l~ 108 (197)
T 3ney_A 91 YQGN-MFGTK--FETVHQIHK 108 (197)
T ss_dssp ETTE-EEEEE--HHHHHHHHH
T ss_pred hhce-ecccc--hhhHHHHHh
Confidence 8888 46653 233444443
No 349
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.61 E-value=0.00021 Score=84.97 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCc
Q 039402 739 RGINLSGGQKQRIQIARALYQDSDIYLFD-DPFSAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQV 802 (1496)
Q Consensus 739 ~g~~LSGGQkqRv~LARAl~~~~~illLD-ep~saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 802 (1496)
....+|+|++|++. +.+...++-++++| ++.+++|......+++.+.. ...++.+|+|.+..
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~-~~~~~piilV~NK~ 290 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFKDLPFLVVINKI 290 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH-HTTTSCEEEEECCT
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH-hcCCCCEEEEEECc
Confidence 34568999999887 55555777789999 99999999887777665433 22378888888443
No 350
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.57 E-value=2e-05 Score=101.26 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=30.3
Q ss_pred eEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCC--CccEE
Q 039402 640 NLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK--ISGTL 677 (1496)
Q Consensus 640 ~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i 677 (1496)
++++++|..++|+|++|+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456789999999999999999999999977654 55655
No 351
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.53 E-value=7.5e-05 Score=90.37 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
++..++++|++||||||++..|.+.+.+.++++.+-+.|+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 5689999999999999999999999999999999988886543
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.51 E-value=6.1e-06 Score=103.13 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=62.2
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc-EEE-ECCeeCCC-------CCh---HHHhcccEEEcccccccccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG-QIL-IDGIDISL-------IGL---HDLRSRLSIIPQDPVMFEGT 1336 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G-~I~-IDG~dI~~-------i~l---~~LR~~i~iIpQdp~LF~gT 1336 (1496)
.+++|+.++|+|++|||||||+++|.+.+.|++| +|. +||.++.. +.. ...++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999987 784 99977632 122 22456789999874 3
Q ss_pred hhhccC---CCC--CCcHHHHHHHHHHcC
Q 039402 1337 VRSNLD---PLE--ESTDEQIWEALDKCQ 1360 (1496)
Q Consensus 1337 IR~NLd---p~~--~~sd~eI~~aL~~~~ 1360 (1496)
..+|+. ... ....++..+.+++.+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 344442 111 123456777887765
No 353
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.50 E-value=4.1e-05 Score=83.19 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=29.6
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
+++++|++++|+||+||||||++++|.|.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999976554
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.49 E-value=8.3e-07 Score=103.51 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=72.4
Q ss_pred CceeeeeEEEeCCc------EEEEEecCCCcHHHHHHHHhcCCCC--CccEEEEcCeeEEEccCCccCCCcHHHHh-c--
Q 039402 634 PTLKDINLKVFHGM------RVAVCGTVGSGKSSLLSCILGEVPK--ISGTLKLCGTKAYVAQSPWIQSGKIEDNI-L-- 702 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~------~~~ivG~~GsGKSTLl~~ilG~~~~--~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI-~-- 702 (1496)
..|++++..+.+++ +++|+||||||||||+++|.|.+.+ .+| .+++++++.+.......+.. .
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~------~v~~i~~D~f~~~~~~l~~~~~~~ 147 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP------NVEVITTDGFLYSNAKLEKQGLMK 147 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC------CEEEEEGGGGBCCHHHHHHTTCGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC------eEEEEeecccccchhhhhhHHHHh
Confidence 34555665565555 8999999999999999999998874 444 45677777765444333321 1
Q ss_pred -cCC--CCCHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 703 -FGK--EMNRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 703 -~g~--~~~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
+|. .+|.+...+.++. +..|..+. . .-..|-+..+|+.-+......|+|+|+|-+..-.|.
T Consensus 148 ~~g~P~~~D~~~l~~~L~~---------L~~g~~~v-~--~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNA---------IKSGQRNV-R--IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHH---------HHTTCSSE-E--EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hccCcccccHHHHHHHHHh---------hhcccccc-c--cchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 232 3555555444433 22232100 0 011222223333222344578999999999876664
No 355
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.46 E-value=3.2e-05 Score=97.16 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=47.8
Q ss_pred EEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCe
Q 039402 1248 LLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGI 1309 (1496)
Q Consensus 1248 f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~ 1309 (1496)
.+++..+|.. ..+++++++++ +|+.+.++|++|+|||||+++|.+...+..|+|.++|.
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4455555532 24678888888 89999999999999999999999999988888887763
No 356
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=3e-06 Score=104.72 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=74.0
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCee-------------EEEccCCc-cCC-CcHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPW-IQS-GKIE 698 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~-------------~yv~Q~~~-i~~-~ti~ 698 (1496)
..++++++++++| +.|+||+|+|||||+++|.|+.. .|.+.++|.. .+++|.+. ... -.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4688999999999 99999999999999999999985 6778777631 23444432 111 1344
Q ss_pred HHh-ccCCCC------CHHHHHHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC
Q 039402 699 DNI-LFGKEM------NRERYNAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS 771 (1496)
Q Consensus 699 eNI-~~g~~~------~~~~~~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s 771 (1496)
|+| .++... ..+...+.+.. -+ ..|||||+|+..+++|...+|++ ||+++-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~-----LL---------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQ-----LL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHH-----HH---------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHH-----HH---------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 454 222210 01111111111 01 24788999999999999999987 898875
Q ss_pred C
Q 039402 772 A 772 (1496)
Q Consensus 772 a 772 (1496)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.44 E-value=3.9e-05 Score=83.54 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=41.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChH
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLH 1317 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1317 (1496)
.++|+.+||+|++||||||+++.|.+.+++.+|.|.+.|.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 568899999999999999999999999998899999887776555443
No 358
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.42 E-value=0.00066 Score=80.15 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.5
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccE
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 676 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~ 676 (1496)
+++|+++.|.||+|||||||+..+++...+..|.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 7899999999999999999999999988765554
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=5.4e-05 Score=80.12 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=40.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhc-ccEEEccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRS-RLSIIPQD 1329 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~-~i~iIpQd 1329 (1496)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999875 899999877653 222332 45666665
No 360
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.35 E-value=0.00021 Score=83.84 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=34.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEE
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILI 1306 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~I 1306 (1496)
-|+.+.--+++|+.+.|.||+|+|||||+.-+..-.....+.+.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 566666679999999999999999999998887655433444433
No 361
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=5.4e-05 Score=80.84 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=28.9
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC-CccEE
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTL 677 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~-~~G~i 677 (1496)
.+|++++|+||||||||||++.|+|.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998874 44544
No 362
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.34 E-value=0.0003 Score=82.10 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHH
Q 039402 633 NPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERY 712 (1496)
Q Consensus 633 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~ 712 (1496)
-+.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|++ .++..+++
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~s-----------------lE~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHS-----------------LEMGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEE-----------------SSSCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEE-----------------CCCCHHHH
Confidence 3457776656899999999999999999999887754321 12 2334433 23444443
Q ss_pred HHHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCC
Q 039402 713 NAVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAV 773 (1496)
Q Consensus 713 ~~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saL 773 (1496)
.+-+.+....-++..+..|. ..||+++++|+.-|...+.++++++.|+|...+
T Consensus 112 ~~R~~~~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 112 IKRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp HHHHHHHHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred HHHHHHHHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 33232221111222221111 138999999999999999999999999986443
No 363
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.28 E-value=7.5e-05 Score=81.12 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++.++|++++|+|+||||||||+++|.|.+ |.+.++|
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 566889999999999999999999999976 7777765
No 364
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00013 Score=86.43 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=32.3
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc-CC------CccEEEECCee
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV-EP------AAGQILIDGID 1310 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~-ep------~~G~I~IDG~d 1310 (1496)
-+++|+.+.|.|++|||||||+..+..-. .| ..+.++||...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58899999999999999999999888752 22 23456666543
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.25 E-value=5.6e-05 Score=88.13 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=38.5
Q ss_pred ccceeeeEEeeCCc------EEEEEcCCCCCHHHHHHHHhcccC--CCccEEEEC
Q 039402 1261 LVLQGISCTFPGGE------KTGIVGRTGSGKSTLIQTLFRIVE--PAAGQILID 1307 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Ge------kvgIVGrTGSGKSTLl~~L~rl~e--p~~G~I~ID 1307 (1496)
..|++++..+.+++ .+||+|++||||||+++.|.++++ |.+|++.+-
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 36788888888776 899999999999999999999987 456664443
No 366
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=6.3e-05 Score=88.85 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=39.3
Q ss_pred CccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 039402 1260 PLVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304 (1496)
Q Consensus 1260 ~~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1304 (1496)
+.+++.++..++.|+. +.+.|++|+||||+++++.+.+.+..|++
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3588999999999988 99999999999999999999987665543
No 367
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00054 Score=81.83 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhc----CCcEEEEEccCcc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHF----SDCTVLTIAHRIT 1442 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f----~~~TVI~IAHRl~ 1442 (1496)
.+|.+|++||+... |...-..+.+.+.+.- .+.++|.++|+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45779999999876 7776666666664322 4778999999884
No 368
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.17 E-value=0.0014 Score=76.86 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=62.1
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC-CC-ccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP-KI-SGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~-~~-~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|+++.|.||+|||||||+..++.... +. .|- .++.+.|+.-+.- ++.++..+..+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~---------------~~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT---------------FRWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHh
Confidence 478999999999999999999998887642 21 110 1234555543321 2334443333333
Q ss_pred chhhH--HHhccCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEecCCCCCCH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSGG-QKQRIQIARALY---QDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSGG-QkqRv~LARAl~---~~~~illLDep~saLD~ 775 (1496)
+...+ ++.+ .+.+ ..++. +.+.+..++++. .+++++++|+.++-.+.
T Consensus 166 g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 GLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 33211 0111 0111 11222 446677777777 67999999999887643
No 369
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.16 E-value=0.0006 Score=81.44 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCc--EEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 645 HGM--RVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 645 ~G~--~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
+|. .+.|+||+|+|||||++.+.+++.+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 456 899999999999999999999887653
No 370
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00037 Score=77.63 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=65.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCChHHHhcccEEEccccccccc-chhhccCC-CCCC
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFEG-TVRSNLDP-LEES 1347 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~~~ 1347 (1496)
+..|+.+.|+|+|||||||++..+..-.....|. ...+.++.|.|..... ++.+|+.- ++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999877653221111111 2356777787764432 44444421 0000
Q ss_pred cHHHHHHHHHHcCCcHHHHhccCCcccccccCCCC---CCchHHHHHHHHHHHccCCCEEEEEcCCC-CCCHHHHHHHHH
Q 039402 1348 TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN---WSMGQRQLVCLGRVLLKRSKILMLDEATA-SVDTATDNLIQQ 1423 (1496)
Q Consensus 1348 sd~eI~~aL~~~~L~~~i~~lp~gLdt~v~e~G~n---LS~GQrQll~LARALLr~~~ILiLDEaTs-slD~~Td~~Iq~ 1423 (1496)
++. .+. .....+......+.+ -+.|.-.+. .+.-+++-+++|+|||-. ++|........+
T Consensus 137 -----------~~~--~~g-~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 -----------PGK--SCG-YSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp -----------TTS--SEE-EEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred -----------cCc--eEE-EeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 000 000 000001111001111 133444333 344688999999999975 566665533344
Q ss_pred HHHHhcCCc
Q 039402 1424 TLRQHFSDC 1432 (1496)
Q Consensus 1424 ~I~~~f~~~ 1432 (1496)
.+....+++
T Consensus 201 ~i~~~~~~~ 209 (235)
T 3llm_A 201 DVVQAYPEV 209 (235)
T ss_dssp HHHHHCTTS
T ss_pred HHHhhCCCC
Confidence 444444444
No 371
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00014 Score=88.88 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCCCCH-HHHHHHHHHHHHhc-CCcEEEEEccCcch-hcc-cCEEEE-EeCCeEeEecChhh
Q 039402 1400 RSKILMLDEATASVDT-ATDNLIQQTLRQHF-SDCTVLTIAHRITS-VID-SDLVLL-LNHGLIEEFDNPAN 1466 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~-~Td~~Iq~~I~~~f-~~~TVI~IAHRl~t-i~~-~DrIlV-L~~G~IvE~g~p~~ 1466 (1496)
+++||++||+..-.+. .+.+.+..++++.. .++++|+++|+... +.. .+++.- ++.|.+++.+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 8999999999877664 56677777777644 46888899998433 322 233332 56788888877653
No 372
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.10 E-value=0.002 Score=71.72 Aligned_cols=28 Identities=39% Similarity=0.564 Sum_probs=24.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776665
No 373
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.10 E-value=0.00044 Score=80.17 Aligned_cols=147 Identities=21% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC-CeeCCCCChHHHhcccEEEcccccccccchhhccC-CCCCCcH
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID-GIDISLIGLHDLRSRLSIIPQDPVMFEGTVRSNLD-PLEESTD 1349 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID-G~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd-p~~~~sd 1349 (1496)
++.+|+|||++|+|||||++.|.+.- +.+. +.+-. ..+...++++|+..-+. -+| |.. ..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~-----~iDTpG~-~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI-----YVDTPGL-HME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE-----EESSSSC-CHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE-----EEECcCC-Ccc
Confidence 34489999999999999999999852 2221 11111 12345678887753110 123 332 211
Q ss_pred HHHHHHHHHcCCcHHHHhccCCcccc--cccCCCCCCchHHHHHHHHHHHc--cCCCEEEEEcCCCCCCHHH-HHHHHHH
Q 039402 1350 EQIWEALDKCQLGDEVRKKEGKLDSK--VTENGENWSMGQRQLVCLGRVLL--KRSKILMLDEATASVDTAT-DNLIQQT 1424 (1496)
Q Consensus 1350 ~eI~~aL~~~~L~~~i~~lp~gLdt~--v~e~G~nLS~GQrQll~LARALL--r~~~ILiLDEaTsslD~~T-d~~Iq~~ 1424 (1496)
-...+++.-... +...-...|.. |-+... +|.|++ .+++++. +.|.|+++ +-+|... .+.+.+.
T Consensus 70 --~~~~l~~~~~~~-~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 70 --EKRAINRLMNKA-ASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp --HHHHHHHHHTCC-TTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred --chhhHHHHHHHH-HHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 111221100000 00111222322 223333 899887 4456655 67889998 6788765 4555555
Q ss_pred HHHhcC--C--cEEEEEccCcchhcc
Q 039402 1425 LRQHFS--D--CTVLTIAHRITSVID 1446 (1496)
Q Consensus 1425 I~~~f~--~--~TVI~IAHRl~ti~~ 1446 (1496)
+.+..+ + .++.+.||.-.-+.+
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHH
Confidence 554322 2 356666777655443
No 374
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.09 E-value=0.00012 Score=79.18 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=39.3
Q ss_pred eEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--------ccCCCccEEEECCee
Q 039402 1253 VRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--------IVEPAAGQILIDGID 1310 (1496)
Q Consensus 1253 ~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--------l~ep~~G~I~IDG~d 1310 (1496)
++|++. ..+++++|++.+++ ||+++|++|+|||||++.+.+ ...++.+.+.++|++
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 456543 45899999998887 799999999999999999986 223345666666643
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.07 E-value=8e-05 Score=79.23 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=34.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCeeCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGIDIS 1312 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~ 1312 (1496)
++|+.|+|+|.+||||||+.+.|.+.+.+ .| .|.+||.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 7777875543
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.06 E-value=9.2e-05 Score=87.52 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=47.3
Q ss_pred ccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1261 LVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1261 ~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
.+++++++.+++|.+++|+|++|+|||||++.|.+.+.+.+|++.+-+.|..+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 47899999999999999999999999999999999998888888887777654
No 377
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.04 E-value=0.00027 Score=86.51 Aligned_cols=61 Identities=28% Similarity=0.501 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc------------CCCccEEEECCeeCCCCChHHHhcccEEEcccccccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV------------EPAAGQILIDGIDISLIGLHDLRSRLSIIPQDPVMFE 1334 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~------------ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1334 (1496)
-+++|||++|+|||||++.|.|.. +|.+|.+.+||.++.-++...+|++.++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 489999999999999999999974 3678999999987765555556666677777665554
No 378
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.03 E-value=0.00014 Score=79.02 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEc
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 680 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~ 680 (1496)
.++|++++|+|++|||||||++.|.+.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56899999999999999999999999998877776554
No 379
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.03 E-value=0.00018 Score=85.16 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=37.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLI 1314 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i 1314 (1496)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|..+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 35679999999999999999999999999999999988887654
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.01 E-value=0.00022 Score=79.23 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
+.++|++++|+|++|||||||+++|.|. .|+|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999997 67776655
No 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.00 E-value=0.0027 Score=70.64 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEPAAG 1302 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep~~G 1302 (1496)
+|+|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 7999999999999999999987665554
No 382
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.99 E-value=0.00032 Score=76.73 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=27.5
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999886
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.93 E-value=0.0005 Score=73.71 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=27.9
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc--------ccCCCccEEEECCe
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR--------IVEPAAGQILIDGI 1309 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r--------l~ep~~G~I~IDG~ 1309 (1496)
+++++++..++. ||+++|++|+|||||++.+.+ ...++.+++.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 788999998877 999999999999999999987 22333456666664
No 384
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.92 E-value=0.0027 Score=74.92 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=60.6
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCC--CCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHh
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEV--PKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDAC 719 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~--~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~ 719 (1496)
-+++|+++.|.||+|||||||+..++... ++..|. .++.+.|+.-+.- ++.++..+..+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~---------------~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT---------------FRPDRLRDIADRF 180 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHc
Confidence 47899999999999999999999988753 322110 1234556544321 2333333333333
Q ss_pred chhhH--HHhccCCCcccccCCCCCCChH-HHHHHHHHHHHc----cCCCEEEEecCCCCCCH
Q 039402 720 SLKKD--LEILSFGDQTVIGERGINLSGG-QKQRIQIARALY----QDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 720 ~l~~d--~~~l~~g~~t~ig~~g~~LSGG-QkqRv~LARAl~----~~~~illLDep~saLD~ 775 (1496)
+...+ ++.+- +-. ..++. +.+.+..++.+. .+++++++|.+++-.++
T Consensus 181 g~~~~~~l~~l~------~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 NVDHDAVLDNVL------YAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TCCHHHHHHTEE------EEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCCHHHHHhcee------Eee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 32211 11110 000 11222 334555555555 57999999999987654
No 385
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.00043 Score=82.36 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAA 1301 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~ 1301 (1496)
+++..+.|.|++|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
No 386
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.88 E-value=0.0029 Score=72.81 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhH
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKD 724 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d 724 (1496)
++.-+.|.||+|+|||||++++.++.... -+.+++ +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~--------~~l-------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA--------ASL-------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES--------TTT--------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH--------HHH--------------------------------
Confidence 46789999999999999999999876310 011110 000
Q ss_pred HHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 039402 725 LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSAVDA 775 (1496)
Q Consensus 725 ~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~saLD~ 775 (1496)
. .... -+++++.|..+++|...+|.++++||+-+..+.
T Consensus 91 ----~---~~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 ----T---SKYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp ----S---SSSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred ----h---hccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 0 0001 136788888888888899999999999887654
No 387
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.87 E-value=0.001 Score=80.49 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998877666654
No 388
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.86 E-value=0.00017 Score=84.28 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=40.1
Q ss_pred eeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 636 LKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 636 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++++||++++|++++|+|++|+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888899999999999999999999999999998888876643
No 389
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.85 E-value=0.00021 Score=89.83 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=40.2
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
.+++++++++ +|+.++++||+|+|||||+++|.+.+.+..|.|.+.|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3567777777 8999999999999999999999999988878776554
No 390
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.80 E-value=0.0015 Score=80.37 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHccCCCEEEEEc-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDE-ATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDE-aTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
..|.+....++..+++++++|+.. ++.++. ..+..+.+.+++ .++.+|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVT-AADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-HHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-hHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 358888899999999998766655 444444 445667777765 478899999887754
No 391
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.00037 Score=91.55 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
+.+++|+.+.|+|++|+|||||+++|.+...+. -+.++|
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~ 271 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLING 271 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEc
Confidence 467899999999999999999999999987532 244444
No 392
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.80 E-value=0.0029 Score=77.35 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=31.4
Q ss_pred cc-CCCEEEEecCCCCCCH-HHHHHHHHHHHHH-HhCCcEEEEEccCc
Q 039402 758 YQ-DSDIYLFDDPFSAVDA-HTGSHLFQEVLLG-LLSSKTVIYVTHQV 802 (1496)
Q Consensus 758 ~~-~~~illLDep~saLD~-~~~~~i~~~~~~~-~~~~~tvilvtH~~ 802 (1496)
|. +++++++||+..-.+. .+...++. .++. ...++.+|++||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 45 8999999999877764 45555554 4444 34578899999984
No 393
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.79 E-value=0.00032 Score=87.71 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=35.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc-EEE-EcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-TLK-LCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G-~i~-~~g 681 (1496)
.+++|++++|+|+||||||||+++|.|.+.+.+| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 4789999999999999999999999999999886 664 655
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.78 E-value=0.00077 Score=71.01 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++|.||+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999854
No 395
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.76 E-value=0.00042 Score=73.23 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=28.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999998864 6666654
No 396
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.76 E-value=0.0029 Score=72.81 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHccCCCEEEEEcCCCCCCHHH----------HHHHHHHHHHhc-----CCcEEEEEccCcchhc----
Q 039402 1385 MGQRQLVCLGRVLLKRSKILMLDEATASVDTAT----------DNLIQQTLRQHF-----SDCTVLTIAHRITSVI---- 1445 (1496)
Q Consensus 1385 ~GQrQll~LARALLr~~~ILiLDEaTsslD~~T----------d~~Iq~~I~~~f-----~~~TVI~IAHRl~ti~---- 1445 (1496)
++++++-.++++...+|.||++||+.+-.+... ...+...+...- .+..+|..+++...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 567777777888788999999999987655322 112333333321 1345777888865432
Q ss_pred -ccCEEEEEe
Q 039402 1446 -DSDLVLLLN 1454 (1496)
Q Consensus 1446 -~~DrIlVL~ 1454 (1496)
.+|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 467666554
No 397
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.71 E-value=0.0025 Score=73.66 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=44.8
Q ss_pred ee-eeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCCCC
Q 039402 1264 QG-ISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISLIG 1315 (1496)
Q Consensus 1264 k~-iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1315 (1496)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+.+|++.+.+.|+..-.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 45 777776 9999999999999999999999999988999999888876544
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.68 E-value=0.0083 Score=70.96 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred cceeeeE--EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCC-ccEEEECC
Q 039402 1262 VLQGISC--TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPA-AGQILIDG 1308 (1496)
Q Consensus 1262 vLk~iS~--~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~-~G~I~IDG 1308 (1496)
.|+.+-= -+++|+.+.|.|++|+|||||+..+..-.... ..-++||.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4555421 38899999999999999999998877644322 23455654
No 399
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.66 E-value=0.0062 Score=68.50 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=29.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
.+++++...++| +.|+|++|+|||||++++.+..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344444545554 9999999999999999999876421 35555433
No 400
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.61 E-value=0.00031 Score=82.57 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=47.3
Q ss_pred ccEEEEeeEEEecCCCCCCcee--------------eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 616 TALDIVDGNFSWDISSHNPTLK--------------DINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 616 ~~i~~~~~~~~~~~~~~~~~L~--------------~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
..+.|+|+++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|.+.+.
T Consensus 132 ~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 35788899999963 467888 8999999999999999999999999999988653
No 401
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.58 E-value=0.00062 Score=82.26 Aligned_cols=43 Identities=19% Similarity=0.027 Sum_probs=37.2
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 456666 8999999999999999999999999998888877643
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.57 E-value=0.00095 Score=74.13 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHh---cccCCCccEE--------EECCeeCCCCC-hHHHhcccEEEc------ccccccc
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLF---RIVEPAAGQI--------LIDGIDISLIG-LHDLRSRLSIIP------QDPVMFE 1334 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~---rl~ep~~G~I--------~IDG~dI~~i~-l~~LR~~i~iIp------Qdp~LF~ 1334 (1496)
.-.++|+|++||||||+.+.|. |+.-.+.|.+ .-.|+|..... +.++-..+.+.. |+..|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998 4444555655 24566655442 445555555544 3333443
Q ss_pred cchhhccCCCCCCcHHHHHHHHHHcCCcHHHH
Q 039402 1335 GTVRSNLDPLEESTDEQIWEALDKCQLGDEVR 1366 (1496)
Q Consensus 1335 gTIR~NLdp~~~~sd~eI~~aL~~~~L~~~i~ 1366 (1496)
..|.+||. .+++-....++.-...|+
T Consensus 89 ~~v~~~ir------~~~v~~~~s~va~~~~vr 114 (233)
T 3r20_A 89 EDVSSEIR------GDAVTGAVSAVSAVPAVR 114 (233)
T ss_dssp EECTTGGG------SHHHHHHHHHHHTCHHHH
T ss_pred eehhhhhc------chHHHHHHHHHhcchHHH
Confidence 34444432 345555544444444443
No 403
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0012 Score=78.58 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=26.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 674 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~ 674 (1496)
.++..+.|+||+|+|||||++.+.+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999876543
No 404
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.00054 Score=80.77 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
+++|+++|| ...++..+...+.+.+.+.-.++.+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 56788888888888888765666777888776544
No 405
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.54 E-value=0.0004 Score=75.52 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCC-CccEE----------EECCeeCCCCChHHHhcc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEP-AAGQI----------LIDGIDISLIGLHDLRSR 1322 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep-~~G~I----------~IDG~dI~~i~l~~LR~~ 1322 (1496)
...+|..++|+|++||||||+.+.|...++. ..+.+ .+||.|..-++.+.++..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 3568999999999999999999999887642 11211 235655555566665543
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.53 E-value=0.0025 Score=74.34 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.8
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
.|+++.--+++|+.+-|.||+|+|||||+.-+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777776689999999999999999999988764
No 407
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.50 E-value=0.0028 Score=73.95 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
++..+.|.||+|+|||||++++.+++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34679999999999999999999877543
No 408
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.50 E-value=0.001 Score=69.84 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|+.|+|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56765
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.46 E-value=0.0014 Score=67.61 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=25.0
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999986
No 410
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.46 E-value=0.012 Score=61.02 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 411
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.0021 Score=70.52 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchhc
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSVI 1445 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti~ 1445 (1496)
.++.+|++||+-. +|.+....+.+.+.+.-.++.+|+++++...+.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 3578999999875 788777778888866545678888888876543
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.42 E-value=0.00061 Score=74.51 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=37.4
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCcc--EEEECCe
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAG--QILIDGI 1309 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G--~I~IDG~ 1309 (1496)
..+++|..|.|+|.+||||||+.+.|.+.+.|..| .+.+||-
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 44678999999999999999999999999988888 8888853
No 413
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.011 Score=62.85 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=33.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEE-EECC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI-LIDG 1308 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I-~IDG 1308 (1496)
..++|..|.|+|.+||||||+.+.|.+.+.+.+|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988777765 4554
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.41 E-value=0.0004 Score=81.99 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=40.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
.+++++++.+++|.+++|+|++|+|||||++.|+|.+.+..|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4678889999999999999999999999999999998877766544
No 415
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.39 E-value=0.0015 Score=75.67 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.38 E-value=0.0013 Score=72.96 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred ceeeeEEee---CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1263 LQGISCTFP---GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1263 Lk~iS~~I~---~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
|.++++++. +|..|.|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 556666665 8999999999999999999999999987 66665543
No 417
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.37 E-value=0.0031 Score=68.06 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.-+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999876543
No 418
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.37 E-value=0.0009 Score=72.25 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=31.9
Q ss_pred ecCCCCCCceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 627 WDISSHNPTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 627 ~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
|.+++-..+++++++..+++ .++++|++|+|||||++.+.+.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 33334456899999988887 5899999999999999999873
No 419
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.35 E-value=0.0057 Score=80.32 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.2
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCCC
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDISL 1313 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1313 (1496)
..++.+++++.+.++|++|+|||||+++|.+... .+-|.+++-++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 3466788999999999999999999999999874 4566777766543
No 420
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.33 E-value=0.0012 Score=69.26 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
.|++++|+|++||||||+++.|.+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997653
No 421
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.31 E-value=0.0011 Score=71.62 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
..+.|.||+|+|||||++++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999877544
No 422
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.0039 Score=72.75 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
+.-+.|.|++|+|||||++++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999987654
No 423
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.27 E-value=0.0019 Score=77.14 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=34.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcc-----------cCCCccEEEECCe
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRI-----------VEPAAGQILIDGI 1309 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl-----------~ep~~G~I~IDG~ 1309 (1496)
.++.|.++||||++|+|||||+++|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 7788899888763
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.24 E-value=0.0016 Score=72.32 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred ceeeeeEEEe---CCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 635 TLKDINLKVF---HGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 635 ~L~~i~l~i~---~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
-|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3566666665 8999999999999999999999999887 5554
No 425
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.20 E-value=0.0044 Score=71.56 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEE
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQI 1304 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I 1304 (1496)
..+.++|++|+||||++++|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5788999999999999999999987766643
No 426
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.17 E-value=0.0032 Score=73.62 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
-+++|+.+-|.|++|+|||||+..+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
No 427
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.16 E-value=0.003 Score=69.62 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
++..+.|+|++|+|||||++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999887653
No 428
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.15 E-value=0.0039 Score=64.88 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
-+|+|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 429
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.15 E-value=0.012 Score=65.82 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
.++|+|++|+|||||++.|+|.-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 6899999999999999999997543
No 430
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.14 E-value=0.019 Score=67.90 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=26.1
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++|+++.|.|++|+|||||...++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876654
No 431
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0014 Score=69.57 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 675 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G 675 (1496)
++|++++|+|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999997755 45
No 432
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.0048 Score=68.00 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
++..+.|+||+|+|||||++.+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887653
No 433
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.11 E-value=0.00044 Score=74.64 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCccEEEECCe--eCCCCCh--------HHHhcccEEEcccccccccchh
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR------IVEPAAGQILIDGI--DISLIGL--------HDLRSRLSIIPQDPVMFEGTVR 1338 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r------l~ep~~G~I~IDG~--dI~~i~l--------~~LR~~i~iIpQdp~LF~gTIR 1338 (1496)
.|+|+|.+||||||+.+.|.+ +.+|..|...++.. |....+. ..++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999988 44555444333221 1100110 0023333456677777887777
Q ss_pred hcc
Q 039402 1339 SNL 1341 (1496)
Q Consensus 1339 ~NL 1341 (1496)
+|+
T Consensus 82 ~~~ 84 (205)
T 2jaq_A 82 EDP 84 (205)
T ss_dssp THH
T ss_pred hhH
Confidence 654
No 434
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.09 E-value=0.0016 Score=77.19 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.4
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
+++..++|+|++|||||||++.|+|...+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 356799999999999999999999998888776655
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.08 E-value=0.0032 Score=64.96 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=24.9
Q ss_pred eeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1264 QGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1264 k~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
++.++++.+| ..+|+|+|||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445666655 889999999999999999863
No 436
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.08 E-value=0.0061 Score=68.36 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
=+|++||++|+|||||++.|++--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999853
No 437
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.06 E-value=0.014 Score=67.48 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEEC
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILID 1307 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~ID 1307 (1496)
+.++++..+.|.|++|+|||||++++.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4568899999999999999999999998763 3445444
No 438
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.04 E-value=0.0033 Score=66.63 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
-+|+++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 439
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.014 Score=66.52 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1270 FPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1270 I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++++..+-|.|++|+|||||++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
No 440
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.96 E-value=0.00087 Score=79.72 Aligned_cols=58 Identities=29% Similarity=0.328 Sum_probs=36.7
Q ss_pred cceEEEEeEEeEeCCCCCccceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECC
Q 039402 1243 HGKIDLLDLQVRYAPQMPLVLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDG 1308 (1496)
Q Consensus 1243 ~g~I~f~nvs~~Y~~~~~~vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG 1308 (1496)
.|.|.|+|+...|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 477999999988864 34889999866 99999999999999999987665555544333
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.96 E-value=0.013 Score=66.80 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.4
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+++.-+.|.||+|+|||||++++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
No 442
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.94 E-value=0.0071 Score=63.53 Aligned_cols=27 Identities=44% Similarity=0.744 Sum_probs=23.6
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999875
No 443
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.92 E-value=0.0093 Score=73.19 Aligned_cols=115 Identities=25% Similarity=0.287 Sum_probs=59.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHHHHHHhchhhHHHh
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNAVLDACSLKKDLEI 727 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~v~~~~~l~~d~~~ 727 (1496)
.++|+|++|+|||||++.|+|. +.+.+.+.| ++-++....-...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~------------~~~~v~~~~----g~t~~~~~~~~~~-------------------- 68 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE------------RISIVEDTP----GVTRDRIYSSAEW-------------------- 68 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE------------EEC---------------CEEEECTT--------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCC------------CCcccCCCC----CcceeEEEEEEEE--------------------
Confidence 7999999999999999999873 222333333 2222211110000
Q ss_pred ccCCCcccccCCCCC--CChHHHHHHHHHHHHccCCCEEEEecCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccCcC
Q 039402 728 LSFGDQTVIGERGIN--LSGGQKQRIQIARALYQDSDIYLFDDPF-SAVDAHTGSHLFQEVLLGLLSSKTVIYVTHQVE 803 (1496)
Q Consensus 728 l~~g~~t~ig~~g~~--LSGGQkqRv~LARAl~~~~~illLDep~-saLD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 803 (1496)
....-+.++-.|.. -.+.|++-...++..+.++|++|+.-.. .++.+.. .++.+. +. ..++.+|+|.+..+
T Consensus 69 -~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~-l~--~~~~pvilV~NK~D 142 (456)
T 4dcu_A 69 -LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKI-LY--RTKKPVVLAVNKLD 142 (456)
T ss_dssp -CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHH-HT--TCCSCEEEEEECC-
T ss_pred -CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHH-HH--HcCCCEEEEEECcc
Confidence 00011222222221 2234888888999999999987776443 3454433 333322 21 24778888877664
No 444
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.92 E-value=0.0047 Score=66.00 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=21.2
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999973
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.92 E-value=0.012 Score=68.11 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=26.9
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
.++++..+.|.||+|+|||||++++.++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 457788999999999999999999999874
No 446
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.90 E-value=0.02 Score=58.42 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPA 1300 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~ 1300 (1496)
.+.-|-|.|++|+|||++++++.......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 44568899999999999999998876543
No 447
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.85 E-value=0.015 Score=71.08 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred CceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHH
Q 039402 634 PTLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYN 713 (1496)
Q Consensus 634 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~ 713 (1496)
+.|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++ .+++.+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~s-----------------lE~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYS-----------------LEMPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEE-----------------SSSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEE-----------------CCCCHHHHH
Confidence 346666545899999999999999999999888775543222 1233332 234444333
Q ss_pred HHHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCCCC
Q 039402 714 AVLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPFSA 772 (1496)
Q Consensus 714 ~v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~sa 772 (1496)
.-+.+....-+...+ +-..|+..+.+|+.-|...+.+.++++.|+|...
T Consensus 246 ~R~~~~~~~i~~~~l----------~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 246 LRMMCSEARIDMNRV----------RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp HHHHHHHTTCCTTTC----------CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred HHHHHHHcCCCHHHH----------hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 222111111111111 1136999999999988887888899998876443
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0016 Score=71.21 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCcc--EEEEc
Q 039402 641 LKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG--TLKLC 680 (1496)
Q Consensus 641 l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G--~i~~~ 680 (1496)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999999998887777 55554
No 449
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.66 E-value=0.016 Score=70.59 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=61.2
Q ss_pred ceeeeeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccCCCcHHHHhccCCCCCHHHHHH
Q 039402 635 TLKDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGKIEDNILFGKEMNRERYNA 714 (1496)
Q Consensus 635 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~~~ti~eNI~~g~~~~~~~~~~ 714 (1496)
-|+.+.=-+++|+++.|.|++|+|||||+.-++...-.. | ..+.|++= ++..++...
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-----~~vl~fSl-----------------Ems~~ql~~ 242 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-----DVVNLHSL-----------------EMGKKENIK 242 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-----CEEEEECS-----------------SSCTTHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-----CEEEEEEC-----------------CCCHHHHHH
Confidence 344443247999999999999999999987776543221 2 23444432 233222222
Q ss_pred HHHHhchhhHHHhccCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEecCC
Q 039402 715 VLDACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDSDIYLFDDPF 770 (1496)
Q Consensus 715 v~~~~~l~~d~~~l~~g~~t~ig~~g~~LSGGQkqRv~LARAl~~~~~illLDep~ 770 (1496)
-+.+....-++..+..|. ..|+..+.+|+.-|...+.+.++++.|+|.
T Consensus 243 R~~~~~~~i~~~~l~~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~ 290 (444)
T 3bgw_A 243 RLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG 290 (444)
T ss_dssp HHHHHHSCCCHHHHHHTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HHHHHHcCCCHHHHhccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC
Confidence 221111111222221111 137788888888888777788898888774
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.61 E-value=0.011 Score=65.64 Aligned_cols=126 Identities=11% Similarity=0.126 Sum_probs=62.4
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcCeeEEEccCCccC-CCcHHHHhccCCCCCHHHHHHHHHHhch
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ-SGKIEDNILFGKEMNRERYNAVLDACSL 721 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g~~~yv~Q~~~i~-~~ti~eNI~~g~~~~~~~~~~v~~~~~l 721 (1496)
+.+|+.++++||+||||||++..++.+.....|. ......+.|.|-.. ..++.+|+....... +-..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~------~~~~~g~ 143 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE------PGKSCGY 143 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC------TTSSEEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc------cCceEEE
Confidence 3568999999999999999887776443222221 12234455555321 123444442111000 0000000
Q ss_pred hhHHHhccCCCccccc---CCCCCCChHHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHH
Q 039402 722 KKDLEILSFGDQTVIG---ERGINLSGGQKQRIQIARALYQDSDIYLFDDPFS-AVDAHTGSHLFQEVL 786 (1496)
Q Consensus 722 ~~d~~~l~~g~~t~ig---~~g~~LSGGQkqRv~LARAl~~~~~illLDep~s-aLD~~~~~~i~~~~~ 786 (1496)
.. ..+.... .+..-.+.|+-.+.. +.-.++-+++++||+=. ++|........+.+.
T Consensus 144 ~~-------~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 144 SV-------RFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EE-------TTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ee-------chhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00 0000000 001123456666653 33588999999999975 466655433434433
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.60 E-value=0.006 Score=66.34 Aligned_cols=30 Identities=43% Similarity=0.550 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEEecCCCcHHHHHHHHh
Q 039402 637 KDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 667 (1496)
Q Consensus 637 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~il 667 (1496)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666665 99999999999999999885
No 452
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.0051 Score=65.59 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
++|++.++|.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999876
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.57 E-value=0.0056 Score=64.88 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCC---ccEEEECCee
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPA---AGQILIDGID 1310 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~---~G~I~IDG~d 1310 (1496)
..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999886543 3778887654
No 454
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.50 E-value=0.013 Score=67.47 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
...+.++||+|+||||++++|.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887766643
No 455
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.50 E-value=0.065 Score=64.83 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeCC
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDIS 1312 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~ 1312 (1496)
++..|.++|++|+||||++..|.+.+....-++.+=..|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35689999999999999999999888765556655334443
No 456
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.45 E-value=0.0091 Score=70.54 Aligned_cols=36 Identities=42% Similarity=0.652 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc-----------ccCCCccEEEECC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFR-----------IVEPAAGQILIDG 1308 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~r-----------l~ep~~G~I~IDG 1308 (1496)
|-++||||++|+|||||+++|.+ ..+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 5578888888776
No 457
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.44 E-value=0.006 Score=65.01 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=26.4
Q ss_pred eeeEEEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 638 DINLKVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 638 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
No 458
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.40 E-value=0.015 Score=71.07 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=30.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCC------------CCccEEEEcCee
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVP------------KISGTLKLCGTK 683 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~------------~~~G~i~~~g~~ 683 (1496)
-.++|+|++|+|||||++.|+|+.. +.+|.+.++|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3799999999999999999999853 566777777753
No 459
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.38 E-value=0.0072 Score=72.11 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+..|..++|+|++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999997
No 460
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.31 E-value=0.0055 Score=66.46 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
...+|.+++|+||+|||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 461
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.30 E-value=0.028 Score=65.55 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
-+++|+++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888754
No 462
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.29 E-value=0.014 Score=62.04 Aligned_cols=35 Identities=43% Similarity=0.728 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc-----cCCCcc----EEEECCe
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI-----VEPAAG----QILIDGI 1309 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl-----~ep~~G----~I~IDG~ 1309 (1496)
||+|+|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 8999999999999999876653 556666 5666664
No 463
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.25 E-value=0.0052 Score=65.49 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.2
Q ss_pred EeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEE
Q 039402 643 VFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 677 (1496)
Q Consensus 643 i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i 677 (1496)
.++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 45789999999999999999999999887665554
No 464
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.15 E-value=0.034 Score=59.87 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 039402 1399 KRSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRITSV 1444 (1496)
Q Consensus 1399 r~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl~ti 1444 (1496)
.++.+|++||+- .++.+..+.+.+.+.+...++.+|+++.+...+
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 367899999975 466777777888887755567777777776543
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.15 E-value=0.0096 Score=63.08 Aligned_cols=25 Identities=52% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
||+|||++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987543
No 466
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.13 E-value=0.02 Score=62.98 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCcEEEEEccCc----------ch-hcccCEEEEEe
Q 039402 1400 RSKILMLDEATASVDTATDNLIQQTLRQHFSDCTVLTIAHRI----------TS-VIDSDLVLLLN 1454 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD~~Td~~Iq~~I~~~f~~~TVI~IAHRl----------~t-i~~~DrIlVL~ 1454 (1496)
+++++++||+-- ++.+.-+.+.. +.. .+.+||++.|+. .. +.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 578999999964 66543333322 333 388999999931 22 33488888764
No 467
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.10 E-value=0.044 Score=66.90 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=31.3
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhcccC
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFRIVE 1298 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~rl~e 1298 (1496)
-|+.+.--+++|+.+.|.||+|+|||||+.-+..-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665689999999999999999999988877554
No 468
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.09 E-value=0.0064 Score=65.66 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1273 GEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1273 GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
...|+|+|++||||||+.+.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5666765443
No 469
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.03 E-value=0.095 Score=62.11 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.1
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
-+++|+.+-|.|+.|+|||||+..+..-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47999999999999999999998776543
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.00 E-value=0.057 Score=63.81 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
.+|.-+-|.|++|+||||+++++.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999998764445556655443
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.99 E-value=0.011 Score=71.00 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCCCC---HHHHHHHHHHHHHhcC-CcEEEEEccCcchhc-------------ccCEEEEEeCC
Q 039402 1400 RSKILMLDEATASVD---TATDNLIQQTLRQHFS-DCTVLTIAHRITSVI-------------DSDLVLLLNHG 1456 (1496)
Q Consensus 1400 ~~~ILiLDEaTsslD---~~Td~~Iq~~I~~~f~-~~TVI~IAHRl~ti~-------------~~DrIlVL~~G 1456 (1496)
+|.++++||+=.-++ +...+.+.+.+++..+ +..+++++|+++.+. +|+..++|...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 578999999987774 6677778888877654 788999999997653 46777777654
No 472
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.96 E-value=0.041 Score=65.12 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccCC
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIVEP 1299 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ep 1299 (1496)
..+..+.|.|++|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987643
No 473
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.95 E-value=0.012 Score=62.13 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
=+|+|+|++|+|||||++.|.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999875
No 474
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.94 E-value=0.007 Score=68.10 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=33.8
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCeeC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGIDI 1311 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~dI 1311 (1496)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456778999999999999999999998764 36788887544
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.018 Score=60.70 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.++++|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.89 E-value=0.0073 Score=70.10 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEVP 671 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~~ 671 (1496)
+.-+.+.||+|+|||+|+++|..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987665
No 477
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.80 E-value=0.014 Score=63.00 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~r 1295 (1496)
+|||+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 478
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.80 E-value=0.032 Score=64.39 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
-+++|..+.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998764
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.78 E-value=0.0043 Score=71.57 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=34.1
Q ss_pred eeEEEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEE
Q 039402 639 INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKL 679 (1496)
Q Consensus 639 i~l~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~ 679 (1496)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 566665 9999999999999999999999999877666654
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.72 E-value=0.017 Score=62.79 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=23.7
Q ss_pred eeeEEeeCCcEEEEEcCCCCCHHHHHHHHh
Q 039402 1265 GISCTFPGGEKTGIVGRTGSGKSTLIQTLF 1294 (1496)
Q Consensus 1265 ~iS~~I~~GekvgIVGrTGSGKSTLl~~L~ 1294 (1496)
+.++.+.+| ...|+|+|||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666654 88999999999999999884
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.041 Score=65.19 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=25.0
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCCCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEVPK 672 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~~~ 672 (1496)
..+..+.|.||+|+|||||++.+...+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999987643
No 482
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.58 E-value=0.11 Score=61.51 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
++..-+.|.|++|+|||||++++.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998764
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.53 E-value=0.043 Score=63.38 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 039402 1268 CTFPGGEKTGIVGRTGSGKSTLIQTLFR 1295 (1496)
Q Consensus 1268 ~~I~~GekvgIVGrTGSGKSTLl~~L~r 1295 (1496)
--+++|..+-|.|+.|+|||||...+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999999875
No 484
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.52 E-value=0.017 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 648 RVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
.++|+|++|+|||||++.+.|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.51 E-value=0.016 Score=62.57 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 039402 648 RVAVCGTVGSGKSSLLSCILG 668 (1496)
Q Consensus 648 ~~~ivG~~GsGKSTLl~~ilG 668 (1496)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 486
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.43 E-value=0.015 Score=62.29 Aligned_cols=46 Identities=35% Similarity=0.686 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHhccc-------------CCCccEEEECCeeCCCCChHHHhccc
Q 039402 1276 TGIVGRTGSGKSTLIQTLFRIV-------------EPAAGQILIDGIDISLIGLHDLRSRL 1323 (1496)
Q Consensus 1276 vgIVGrTGSGKSTLl~~L~rl~-------------ep~~G~I~IDG~dI~~i~l~~LR~~i 1323 (1496)
|.|+||||||||||++.|..-. +|..|++ ||+|.--++.++..+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH
No 487
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.31 E-value=0.019 Score=61.71 Aligned_cols=32 Identities=38% Similarity=0.378 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccCCCccEEEECCee
Q 039402 1274 EKTGIVGRTGSGKSTLIQTLFRIVEPAAGQILIDGID 1310 (1496)
Q Consensus 1274 ekvgIVGrTGSGKSTLl~~L~rl~ep~~G~I~IDG~d 1310 (1496)
..|+|+|++||||||+.+.|.+. |-..||.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 777777543
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.28 E-value=0.14 Score=71.18 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=31.7
Q ss_pred EeeCCcEEEEEcCCCCCHHHHHHHHhcccCCCccE-EEECC
Q 039402 1269 TFPGGEKTGIVGRTGSGKSTLIQTLFRIVEPAAGQ-ILIDG 1308 (1496)
Q Consensus 1269 ~I~~GekvgIVGrTGSGKSTLl~~L~rl~ep~~G~-I~IDG 1308 (1496)
-+++|+.|-|.||+|+|||||+..+..-.....|. +++++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 38999999999999999999999998766544443 34454
No 489
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.26 E-value=0.18 Score=56.15 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1272 GGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1272 ~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
+..-+-|.|++|+||||+++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998754
No 490
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.17 E-value=0.0075 Score=70.64 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=33.7
Q ss_pred ccceeeeEEeeCCcE--EEEEcCCCCCHHHHHHHHhccc
Q 039402 1261 LVLQGISCTFPGGEK--TGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1261 ~vLk~iS~~I~~Gek--vgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+++++++.+++|++ ++|+|+.||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998864
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.14 E-value=0.21 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 645 HGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 645 ~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
+..-+.+.||.|+|||+|++++..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44578999999999999999999886
No 492
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.13 E-value=0.012 Score=66.05 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.5
Q ss_pred EEeCCcEEEEEecCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 039402 642 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG 681 (1496)
Q Consensus 642 ~i~~G~~~~ivG~~GsGKSTLl~~ilG~~~~~~G~i~~~g 681 (1496)
..+++.++.++|++||||||+.+.|.+.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345678999999999999999999998765 23444443
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.07 E-value=0.05 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
++.-+|+|+|++|+|||||++.|.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 494
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.04 E-value=0.015 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcCCCCC
Q 039402 647 MRVAVCGTVGSGKSSLLSCILGEVPKI 673 (1496)
Q Consensus 647 ~~~~ivG~~GsGKSTLl~~ilG~~~~~ 673 (1496)
..++|+|++|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999986543
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.04 E-value=0.033 Score=64.28 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=36.0
Q ss_pred cceeeeEEeeCCcEEEEEcCCCCCHHHHHHHHhc----ccCCCccEEEECC
Q 039402 1262 VLQGISCTFPGGEKTGIVGRTGSGKSTLIQTLFR----IVEPAAGQILIDG 1308 (1496)
Q Consensus 1262 vLk~iS~~I~~GekvgIVGrTGSGKSTLl~~L~r----l~ep~~G~I~IDG 1308 (1496)
++++..+.+ .|.-+.|+|+||+||||++..|.+ ++..+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 677877777 788999999999999999999987 5544545555443
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.00 E-value=0.15 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.5
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
++..-+.|.||+|+|||||++++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999875
No 497
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.97 E-value=0.024 Score=60.07 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.8
Q ss_pred eCCcEEEEEecCCCcHHHHHHHHhcC
Q 039402 644 FHGMRVAVCGTVGSGKSSLLSCILGE 669 (1496)
Q Consensus 644 ~~G~~~~ivG~~GsGKSTLl~~ilG~ 669 (1496)
.+|.+++++|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999754
No 498
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.97 E-value=0.17 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhcCC
Q 039402 646 GMRVAVCGTVGSGKSSLLSCILGEV 670 (1496)
Q Consensus 646 G~~~~ivG~~GsGKSTLl~~ilG~~ 670 (1496)
..-+.|.||+|+||||+++++..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998865
No 499
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.96 E-value=0.03 Score=60.01 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 039402 1275 KTGIVGRTGSGKSTLIQTLFRI 1296 (1496)
Q Consensus 1275 kvgIVGrTGSGKSTLl~~L~rl 1296 (1496)
||+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999754
No 500
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.95 E-value=0.023 Score=60.18 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 039402 1271 PGGEKTGIVGRTGSGKSTLIQTLFRIV 1297 (1496)
Q Consensus 1271 ~~GekvgIVGrTGSGKSTLl~~L~rl~ 1297 (1496)
.+|..|+|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
Done!