BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039403
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 100 SKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159
+K++ + ++ + ++ L++ L M + L L+ L L+ N ++ C G
Sbjct: 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-----RITCVG 121
Query: 160 SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193
+ F L + L S+Y T+ GA L SL
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N +L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N +L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N +L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N +L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N +L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 102 LSRMVLSEYQFPPSLIQ-------LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR- 153
L R+ L PS Q L LSN + MLE L +L++L L+ N+ L R
Sbjct: 471 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARL 529
Query: 154 -KLACAG------------------SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLI 194
K A G S GF E+ V K ++ L +G L L + +
Sbjct: 530 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
Query: 195 VNPCAYLRKLPEELWCIKSLRKLDLHWPQ----TELRQRLRTFE 234
N L+ L + I S+ K + P TEL R F+
Sbjct: 590 FNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFD 632
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 102 LSRMVLSEYQFPPSLIQ-------LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR- 153
L R+ L PS Q L LSN + MLE L +L++L L+ N+ L R
Sbjct: 466 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARL 524
Query: 154 -KLACAG------------------SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLI 194
K A G S GF E+ V K ++ L +G L L + +
Sbjct: 525 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
Query: 195 VNPCAYLRKLPEELWCIKSLRKLDLHWPQ----TELRQRLRTFE 234
N L+ L + I S+ K + P TEL R F+
Sbjct: 585 FNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFD 627
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 102 LSRMVLSEYQFPPSLIQ-------LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR- 153
L R+ L PS Q L LSN + MLE L +L++L L+ N+ L R
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARL 519
Query: 154 -KLACAG------------------SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLI 194
K A G S GF E+ V K ++ L +G L L + +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 195 VNPCAYLRKLPEELWCIKSLRKLDLHWPQ----TELRQRLRTFE 234
N L+ L + I S+ K + P TEL R F+
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFD 622
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178
+SLSN L + + RL L +LKL NS+ SG P ++ +S+ WLD
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSF---------SGNIPA-ELGDCRSLIWLD 544
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178
+SLSN L + + RL L +LKL NS+ SG P ++ +S+ WLD
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSF---------SGNIPA-ELGDCRSLIWLD 541
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N L E P +L L L L L+ NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149
P L +LSL+N L E P +L L L L L+ NS
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,155,536
Number of Sequences: 62578
Number of extensions: 274096
Number of successful extensions: 589
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 22
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)