Query 039403
Match_columns 249
No_of_seqs 139 out of 2294
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.1E-22 6.7E-27 186.2 11.7 214 2-222 148-366 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.9E-21 4.1E-26 181.0 10.8 215 2-223 172-415 (968)
3 KOG0444 Cytoskeletal regulator 99.8 2.9E-22 6.3E-27 168.8 -3.8 215 1-225 157-375 (1255)
4 KOG0444 Cytoskeletal regulator 99.8 2.1E-20 4.6E-25 157.7 -2.0 212 1-223 39-256 (1255)
5 KOG0472 Leucine-rich repeat pr 99.7 5.7E-20 1.2E-24 147.4 -6.8 207 3-223 100-308 (565)
6 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.6E-23 145.8 0.4 214 1-223 204-427 (873)
7 PLN03210 Resistant to P. syrin 99.7 9.2E-17 2E-21 151.1 12.9 214 1-223 618-904 (1153)
8 KOG4194 Membrane glycoprotein 99.7 5.1E-18 1.1E-22 142.1 2.5 212 3-222 111-327 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 9.5E-20 2.1E-24 146.2 -10.7 208 2-223 76-286 (565)
10 PLN03210 Resistant to P. syrin 99.6 1.9E-15 4.1E-20 142.3 12.8 208 3-223 598-836 (1153)
11 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.3E-22 118.0 -4.9 177 14-202 30-213 (264)
12 KOG0617 Ras suppressor protein 99.5 4.8E-17 1E-21 116.9 -5.8 165 37-211 29-195 (264)
13 KOG0618 Serine/threonine phosp 99.5 2.4E-15 5.1E-20 132.0 -3.1 210 2-223 249-487 (1081)
14 cd00116 LRR_RI Leucine-rich re 99.5 7E-15 1.5E-19 120.6 -0.4 210 7-223 41-289 (319)
15 PRK15370 E3 ubiquitin-protein 99.5 2.9E-13 6.2E-18 121.1 9.3 191 1-222 185-377 (754)
16 cd00116 LRR_RI Leucine-rich re 99.4 9.1E-15 2E-19 119.9 -2.5 212 6-223 70-318 (319)
17 PRK15387 E3 ubiquitin-protein 99.4 1.5E-12 3.2E-17 116.3 10.3 197 1-223 208-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 117.5 7.9 197 1-223 206-426 (754)
19 KOG0618 Serine/threonine phosp 99.3 3.5E-14 7.6E-19 124.8 -4.7 195 18-223 242-463 (1081)
20 PRK15387 E3 ubiquitin-protein 99.3 1.4E-11 3E-16 110.1 7.5 183 1-208 229-465 (788)
21 KOG4237 Extracellular matrix p 99.2 5E-13 1.1E-17 107.6 -3.7 88 133-223 269-357 (498)
22 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.2E-17 109.4 -3.8 206 1-222 57-270 (722)
23 KOG2120 SCF ubiquitin ligase, 99.0 5.6E-12 1.2E-16 98.4 -6.0 183 42-230 186-381 (419)
24 COG4886 Leucine-rich repeat (L 99.0 6.2E-10 1.3E-14 94.1 5.0 184 6-202 105-291 (394)
25 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.4E-15 94.5 0.3 179 39-223 119-312 (505)
26 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.8E-15 89.8 0.8 179 9-202 206-413 (490)
27 KOG0532 Leucine-rich repeat (L 98.9 1.8E-11 3.9E-16 103.0 -5.8 171 40-223 74-245 (722)
28 KOG4341 F-box protein containi 98.9 4.5E-11 9.8E-16 97.1 -4.0 229 3-232 150-446 (483)
29 KOG1909 Ran GTPase-activating 98.9 4.2E-10 9.1E-15 89.6 -0.1 185 11-200 86-310 (382)
30 KOG1909 Ran GTPase-activating 98.8 1.1E-10 2.4E-15 92.9 -3.5 87 11-100 24-131 (382)
31 KOG3207 Beta-tubulin folding c 98.8 3E-10 6.6E-15 92.9 -1.4 197 1-202 128-340 (505)
32 PF14580 LRR_9: Leucine-rich r 98.8 7.9E-10 1.7E-14 81.9 0.9 106 113-223 41-151 (175)
33 KOG4237 Extracellular matrix p 98.8 1.9E-10 4.1E-15 93.0 -3.9 193 1-201 74-359 (498)
34 PF14580 LRR_9: Leucine-rich r 98.8 5.8E-09 1.2E-13 77.3 3.6 104 113-223 18-124 (175)
35 COG4886 Leucine-rich repeat (L 98.7 5.9E-09 1.3E-13 88.2 3.4 165 1-178 123-290 (394)
36 PLN03150 hypothetical protein; 98.7 1.6E-08 3.5E-13 90.0 5.7 105 116-223 420-526 (623)
37 KOG4658 Apoptotic ATPase [Sign 98.6 5.4E-08 1.2E-12 89.1 5.8 90 6-98 559-651 (889)
38 KOG1259 Nischarin, modulator o 98.6 1.4E-08 3.1E-13 79.8 1.2 125 90-223 285-410 (490)
39 KOG2120 SCF ubiquitin ligase, 98.6 5.3E-10 1.2E-14 87.5 -6.8 179 18-199 186-374 (419)
40 KOG4658 Apoptotic ATPase [Sign 98.6 6.7E-08 1.5E-12 88.5 5.0 118 3-125 532-653 (889)
41 PLN03150 hypothetical protein; 98.5 1.8E-07 4E-12 83.4 6.4 105 19-127 420-528 (623)
42 PF13855 LRR_8: Leucine rich r 98.5 2.2E-07 4.7E-12 56.7 4.0 59 164-223 1-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.3 7.2E-07 1.6E-11 54.3 3.9 10 64-73 2-11 (61)
44 KOG1859 Leucine-rich repeat pr 98.3 3.1E-09 6.7E-14 92.3 -9.8 124 91-223 166-290 (1096)
45 KOG1859 Leucine-rich repeat pr 98.1 2.6E-08 5.6E-13 86.8 -9.1 124 65-201 166-292 (1096)
46 KOG0531 Protein phosphatase 1, 98.0 6.6E-07 1.4E-11 76.2 -2.3 126 16-151 71-199 (414)
47 KOG0531 Protein phosphatase 1, 97.9 8E-07 1.7E-11 75.7 -3.1 116 3-126 81-198 (414)
48 KOG4579 Leucine-rich repeat (L 97.9 3.7E-07 8.1E-12 63.8 -4.2 104 116-223 29-134 (177)
49 KOG3665 ZYG-1-like serine/thre 97.9 4.9E-06 1.1E-10 74.6 1.5 82 62-147 147-229 (699)
50 COG5238 RNA1 Ran GTPase-activa 97.8 4.9E-06 1.1E-10 64.9 0.8 208 9-222 22-282 (388)
51 KOG3665 ZYG-1-like serine/thre 97.8 4.1E-06 8.9E-11 75.1 0.3 131 16-153 121-265 (699)
52 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.5E-10 63.7 1.8 174 40-220 70-287 (418)
53 PF12799 LRR_4: Leucine Rich r 97.8 3.1E-05 6.7E-10 43.6 3.0 36 165-201 2-37 (44)
54 COG5238 RNA1 Ran GTPase-activa 97.7 2.7E-06 5.8E-11 66.4 -2.5 189 9-201 84-316 (388)
55 KOG2982 Uncharacterized conser 97.7 2.2E-05 4.7E-10 62.2 2.0 110 36-149 40-157 (418)
56 KOG4341 F-box protein containi 97.6 1.4E-06 3E-11 71.5 -6.1 181 42-223 139-331 (483)
57 PF12799 LRR_4: Leucine Rich r 97.5 9.6E-05 2.1E-09 41.5 3.0 38 114-152 1-38 (44)
58 KOG1644 U2-associated snRNP A' 97.3 0.00037 8.1E-09 52.2 4.4 105 114-223 42-151 (233)
59 KOG1644 U2-associated snRNP A' 97.2 0.00066 1.4E-08 50.9 4.6 105 63-173 42-149 (233)
60 KOG4579 Leucine-rich repeat (L 97.1 5.5E-05 1.2E-09 53.2 -1.4 95 1-100 34-134 (177)
61 PRK15386 type III secretion pr 97.1 0.0041 8.8E-08 52.4 8.9 52 15-73 50-104 (426)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00038 8.3E-09 54.1 1.6 116 30-147 32-152 (260)
63 KOG2739 Leucine-rich acidic nu 96.8 0.00052 1.1E-08 53.4 1.5 38 113-150 64-103 (260)
64 KOG1947 Leucine rich repeat pr 96.6 0.00028 6E-09 61.1 -1.5 133 61-195 186-328 (482)
65 PRK15386 type III secretion pr 96.5 0.0063 1.4E-07 51.2 5.5 117 83-223 46-167 (426)
66 KOG2123 Uncharacterized conser 96.3 0.00012 2.5E-09 57.6 -4.9 111 115-232 20-138 (388)
67 KOG1947 Leucine rich repeat pr 96.0 0.00062 1.3E-08 58.9 -2.7 90 9-98 206-304 (482)
68 PF00560 LRR_1: Leucine Rich R 95.0 0.0082 1.8E-07 28.0 0.4 18 190-208 2-19 (22)
69 PF13306 LRR_5: Leucine rich r 95.0 0.072 1.6E-06 37.2 5.4 35 160-197 77-112 (129)
70 KOG3864 Uncharacterized conser 94.9 0.0019 4.2E-08 48.4 -3.0 85 115-199 102-187 (221)
71 PF13306 LRR_5: Leucine rich r 94.7 0.18 3.8E-06 35.2 6.9 82 59-147 8-90 (129)
72 KOG3864 Uncharacterized conser 94.1 0.0036 7.7E-08 47.1 -3.1 82 140-223 103-187 (221)
73 KOG2123 Uncharacterized conser 93.8 0.0033 7.1E-08 49.7 -3.9 80 137-223 18-99 (388)
74 PF13504 LRR_7: Leucine rich r 88.5 0.46 1E-05 20.4 1.7 11 189-199 2-12 (17)
75 PF13516 LRR_6: Leucine Rich r 85.0 0.37 8.1E-06 22.7 0.5 22 62-85 1-22 (24)
76 KOG4308 LRR-containing protein 82.6 0.0036 7.9E-08 54.1 -12.3 175 43-223 89-301 (478)
77 smart00367 LRR_CC Leucine-rich 81.4 1 2.2E-05 21.7 1.2 12 188-199 2-13 (26)
78 smart00369 LRR_TYP Leucine-ric 71.5 2.7 5.9E-05 20.0 1.2 13 188-200 2-14 (26)
79 smart00370 LRR Leucine-rich re 71.5 2.7 5.9E-05 20.0 1.2 13 188-200 2-14 (26)
80 smart00368 LRR_RI Leucine rich 55.9 7 0.00015 19.1 1.0 14 188-201 2-15 (28)
81 smart00365 LRR_SD22 Leucine-ri 51.9 9.6 0.00021 18.5 1.1 14 188-201 2-15 (26)
82 smart00364 LRR_BAC Leucine-ric 48.5 11 0.00024 18.3 1.0 10 190-199 4-13 (26)
83 KOG0473 Leucine-rich repeat pr 46.9 0.19 4.1E-06 39.1 -8.2 22 178-199 101-122 (326)
84 KOG3763 mRNA export factor TAP 46.8 6 0.00013 34.8 -0.2 12 137-148 243-254 (585)
85 KOG0473 Leucine-rich repeat pr 40.1 1.9 4.2E-05 33.7 -3.6 82 12-98 37-120 (326)
86 KOG3763 mRNA export factor TAP 29.2 24 0.00052 31.3 0.7 14 189-202 271-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=3.1e-22 Score=186.24 Aligned_cols=214 Identities=23% Similarity=0.253 Sum_probs=139.0
Q ss_pred CCCCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++ .+|..++.+++|++| +++| .+.+.+|..++++++|++|++.++. +.+|..++++++|+.|++++|. .
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l 224 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--L 224 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc--c
Confidence 445554 677788888888888 7777 7777788888888888888855555 5677778888888888888876 6
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCcee-eeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+.++++|+.|+++++. +.. ++..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.. +
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p 301 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-P 301 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-C
Confidence 66677777888888888887754 332 2224555 666666666666665555556666666666666666555443 4
Q ss_pred eeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
.. +..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++++|
T Consensus 302 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 302 EL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred hh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 44 455566666666653222244555555666666666666655555555555666666666555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.9e-21 Score=180.97 Aligned_cols=215 Identities=25% Similarity=0.278 Sum_probs=133.2
Q ss_pred CCCCc-cccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYI-DQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l-~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++|.+ +.+|..++++++|++| +.+| .+.+.+|..++++++|++|++.++. +.+|..++++++|+.|++++|. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l 248 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN--L 248 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce--e
Confidence 44554 4788888888888888 8877 7777788888888888888865555 5677788888888888888886 6
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCcee-eeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+.++++|+.|+++++. +.. ++..+.. +++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+.. +
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~ 325 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-P 325 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCe-eeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-C
Confidence 66677778888888888887754 332 1113444 455555555555555444555555555555555555444433 3
Q ss_pred eeCCCCCCcccEEEeccC-----------------------Cccc-ceeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 157 CAGSGGFPELKVLHLKSM-----------------------YWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~-----------------------~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
.. +..+++|+.|++++| +.++ .+|..+..+++|+.|++++|.+.+.+|..+..++
T Consensus 326 ~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 326 VA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred hh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 33 444444555555442 2222 3444444444555555555555445555555666
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+.+++++|.
T Consensus 405 ~L~~L~L~~n~ 415 (968)
T PLN00113 405 SLRRVRLQDNS 415 (968)
T ss_pred CCCEEECcCCE
Confidence 66666666664
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.9e-22 Score=168.76 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=186.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|++|.+..+|+.+.++.+|++| +++| .+.---...+..|++|+.|..++.+ ..+|..+..+.||..++++.|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--- 232 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--- 232 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---
Confidence 5789999999999999999999 8888 5532222334467777778744444 679999999999999999998
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
....+|.++.++++|+.|+++++. ++++...... +.+|+.|.++.|+++ .+|..+.+++.|+.|.+.+|+++-+..|
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 667789999999999999999988 9999887777 889999999999998 8999999999999999999988766667
Q ss_pred eeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCcHH
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQTE 225 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~~~ 225 (249)
+. ++.+.+|+.++.++ |.+.-+|..++.|..|+.|.|+.|++. .+|+.|.-++.|+.||+..|++.
T Consensus 310 SG-IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 310 SG-IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 77 99999999999998 788889999999999999999999976 58999999999999999999743
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=2.1e-20 Score=157.67 Aligned_cols=212 Identities=25% Similarity=0.258 Sum_probs=168.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|..|++.++|+.++.|.+|++| +..| .+. .+...++.++.|+.+.+..++ ..+|+.+..+..|+.|+++.|
T Consensus 39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN--- 113 (1255)
T KOG0444|consen 39 LNRTKLEQVPEELSRLQKLEHLSMAHN-QLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN--- 113 (1255)
T ss_pred echhhhhhChHHHHHHhhhhhhhhhhh-hhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh---
Confidence 4678999999999999999999 8888 554 577788899999999966666 789999999999999999999
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....|..+.+-+++-.|+++.+. ++.++- .+.+ +.-|-.||++.|++. .+|+.+.++..|++|.+++|.+....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfin-LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ- 189 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFIN-LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ- 189 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHh-hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH-
Confidence 566788889899999999999988 887775 3445 667888999999987 78888999999999999988765322
Q ss_pred eeeCCCCCCcccEEEeccCCc-ccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYW-LDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
... +-.+.+|+.|++++... +..+|..+..+.+|..++++.|.+. .+|+.+-.+++|++|++++|.
T Consensus 190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 222 33445667777776332 2267777777888888888887754 467777777888888888773
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=5.7e-20 Score=147.44 Aligned_cols=207 Identities=20% Similarity=0.153 Sum_probs=144.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
+++++++|+.++....+.++ .+.| .+. +++++++.+-.++.|+...++ ..+|..++++.++..+++.++. ...
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~---l~~ 174 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK---LKA 174 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhcccc-cee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc---hhh
Confidence 34555555555555555555 4444 333 455555555555555533333 4555555556666666666553 233
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
+|+..-+|++|++++...+. ++.++..++. +.+|..|++..|.+. ..| .|+.|+.|+.+.++.|.+.- .++.-.
T Consensus 175 l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~--lpae~~ 248 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNL-LETLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM--LPAEHL 248 (565)
T ss_pred CCHHHHHHHHHHhcccchhh-hhcCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh--hHHHHh
Confidence 33333347777777777766 7777777777 888888888888886 454 78888888888888776632 233304
Q ss_pred CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
..++++..|++.+ |.++++|.+++-+++|.+||+++|.++ .+|..++++ .|+++.+.|||
T Consensus 249 ~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence 4788999999999 899999999999999999999999976 588899999 99999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.2e-18 Score=145.82 Aligned_cols=214 Identities=22% Similarity=0.192 Sum_probs=158.9
Q ss_pred CCCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+.|.++.+|.. +.++++|+.| +..| .+...-.-.|..+++|+.|.+-+++ ..+.+ .|..|.+++.|+++.|.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-- 280 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-- 280 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch--
Confidence 467888999886 4449999999 8888 6654434567788899998866665 44444 34578899999999886
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
...---..+..+++|+.|+++.+. ++++.. .+.. +++|+.|++++|.++.-.+..+..++.|+.|+++.|.++.--
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Wsf-tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~- 357 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSF-TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA- 357 (873)
T ss_pred hhhhhcccccccchhhhhccchhh-hheeecchhhh-cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-
Confidence 544444567789999999999988 888888 4555 889999999999998777788888888888988888775422
Q ss_pred eeeCCCCCCcccEEEeccCCccc-cee---ccCcccccccceeeccCcCcCCCc-cccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLD-EWT---MGAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~ 223 (249)
... +..+++|+.|+++. |.+. .+. ..+.+++.|+.|.+.+|++- .+| ..+..+..|++||+.+|.
T Consensus 358 e~a-f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 358 EGA-FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhH-HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence 233 56677888888888 5555 222 23446888888888888853 454 466778888888888885
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=9.2e-17 Score=151.14 Aligned_cols=214 Identities=20% Similarity=0.185 Sum_probs=133.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.+.++|.++..+++|+.| ++++ ...+.+| .++.+++|++|++.+|. ..+|..++++++|+.|++++|. .
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~--~ 693 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE--N 693 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC--C
Confidence 4567788888888888888888 7776 4445666 37778888888866666 6778888888888888888876 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCc----------eeeee---c------------------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKL----------SRMVL---S------------------------------------ 108 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L----------~~l~l---~------------------------------------ 108 (249)
...+|..+ ++++|+.|+++++..+ +.+.+ .
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence 55565544 5666666666553211 11111 0
Q ss_pred -CCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccC-------------
Q 039403 109 -EYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSM------------- 174 (249)
Q Consensus 109 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------- 174 (249)
... +++|+.|++++|......|..++.+++|+.|++.+|...+.. |.. . .+++|+.|++++|
T Consensus 773 ~~~~-~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~-~-~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 773 MTML-SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTG-I-NLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred hhhc-cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCC-C-CccccCEEECCCCCcccccccccccc
Confidence 001 235666666666555556777777777888887766433222 221 1 3344444444443
Q ss_pred -------CcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 175 -------YWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 175 -------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++++|..+..+++|+.|++++|.....+|..+..++.|+.+++++|.
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3344555555666777777777766555566666667777777777774
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=5.1e-18 Score=142.11 Aligned_cols=212 Identities=21% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+|.++.||.......+|++| +..| .+...-..++..++.|+.|+++.+. .+++. .+..-.++++|++++|. ...
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~--It~ 187 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR--ITT 187 (873)
T ss_pred cchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc--ccc
Confidence 34444444444444444444 4333 3333223333344444444433333 22221 23333344444444443 222
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
--...|..+.+|..|.++++. +..++. .|.. +++|+.|++..|.+.-.--..+..+++|+.|.+..|.+..-. ...
T Consensus 188 l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~-L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~ 264 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKR-LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGA 264 (873)
T ss_pred cccccccccchheeeecccCc-ccccCHHHhhh-cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccc
Confidence 112233333344444444433 333333 3444 444444444444433111122333344444444444332211 122
Q ss_pred CCCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
|-.+.++++|+++. |.+.++. .++.++..|++|+++.|.+..--++.+..+++|++|++++|
T Consensus 265 -Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 265 -FYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred -eeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 33445555555555 4444332 23445666666666666655433445556666777777666
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=9.5e-20 Score=146.18 Aligned_cols=208 Identities=24% Similarity=0.266 Sum_probs=174.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
.++++.++|++++.+..++.+ ++.| ++. ++|..++.+..+..|+...+. .+.+++++.+..|+.++..+| ...
T Consensus 76 ~~n~l~~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N---~i~ 150 (565)
T KOG0472|consen 76 HDNKLSQLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN---QIS 150 (565)
T ss_pred ccchhhhCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc---ccc
Confidence 367888888888888888888 7776 544 788888888888888855555 778888888888888888877 445
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
.+|+.+.++.++..+++.++. +..++...-+ ++.|++++...|-++ ..|+.++.+.+|+.|++..|++.. +| .
T Consensus 151 slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~--lP-e- 223 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF--LP-E- 223 (565)
T ss_pred cCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc--CC-C-
Confidence 677788888888888888876 6666655556 788999999998886 889999999999999999998754 24 6
Q ss_pred CCCCCcccEEEeccCCcccceeccCc-ccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMGAG-ALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
|..|..|+++++.. |.++.+|++.+ +++++..||+.+|++ +++|+++.-+.+|+++|+++|.
T Consensus 224 f~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 224 FPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred CCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence 88999999999998 89999999887 899999999999995 5799999999999999999996
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=1.9e-15 Score=142.34 Aligned_cols=208 Identities=23% Similarity=0.199 Sum_probs=140.2
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++.++.+|..+ ..++|++| +.++ .+. .++..+..+++|+.|++.+++ ..+| .+..+++|+.|++++|. ...
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~--~L~ 671 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS--SLV 671 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC--Ccc
Confidence 55677788776 46888888 7777 554 577778889999999966555 4555 47788999999999987 677
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCc------
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR------ 153 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------ 153 (249)
.+|..+.++++|+.|+++++..++.++..+ + +++|+.|++++|......|.. ..+|+.|++.++.+..-
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~-l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l 746 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-N-LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRL 746 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-C-CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccc
Confidence 788889999999999998854365555322 4 566777777666433222221 23444444444432210
Q ss_pred -------------------e---eeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccC
Q 039403 154 -------------------K---LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 154 -------------------~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
. .+.. ...+++|+.|++++|..+.++|..++.+++|+.|++++|...+.+|..+ .+
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred cccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 0 0000 1123577788888766677788888888888888888887666677654 57
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
++|+.+++++|.
T Consensus 825 ~sL~~L~Ls~c~ 836 (1153)
T PLN03210 825 ESLESLDLSGCS 836 (1153)
T ss_pred cccCEEECCCCC
Confidence 778888888774
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.9e-17 Score=117.99 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=110.3
Q ss_pred hhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCC
Q 039403 14 WMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKL 91 (249)
Q Consensus 14 ~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (249)
-.+.+++.| ++.| ++. .+|+.++++.+|+.|++..+. +++|..+..+++|+.|+++-| ....+|..|+.++.|
T Consensus 30 f~~s~ITrLtLSHN-Kl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn---rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN---RLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccC-cee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh---hhhcCccccCCCchh
Confidence 345555555 5555 444 455556666666666633333 566666666666666666655 334456666666666
Q ss_pred cEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 92 ECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 92 ~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
+.|+++.+. +.+-.+ .|.. +..|+.|+++.|.++ ..|+.++++++|+.|.+.+|.+.. +|.. ++.+.+|++|
T Consensus 105 evldltynn-l~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNN-LNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKE-IGDLTRLREL 178 (264)
T ss_pred hhhhccccc-cccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHH-HHHHHHHHHH
Confidence 666666644 333222 3334 667777788888776 677888888888888888776543 3556 7777888888
Q ss_pred EeccCCcccceeccCcccc---cccceeeccCcCcC
Q 039403 170 HLKSMYWLDEWTMGAGALP---KLESLIVNPCAYLR 202 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~ 202 (249)
++.+ +.++.+|.+++.+. +=+.+.+..|++..
T Consensus 179 hiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 179 HIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 8888 77777777766442 23445555666443
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=4.8e-17 Score=116.86 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
+.++.+++.|.++.+. ..+|+.+..+.+|+.|++.+| ..+.+|..++++++|+.|++.-+. +..++-.|+. +|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs-~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS-FPA 103 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecchhh-hhcCccccCC-Cch
Confidence 4567778888855555 778888888889999998888 556678888888888888887655 5555557778 888
Q ss_pred ccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCccccccccee
Q 039403 116 LIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLI 194 (249)
Q Consensus 116 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 194 (249)
|+.||+++|.+.. .+|..+..+..|+.|.+++|.+. .+|.. ++.+.+|+.|.+.+ +.+-++|.+++.+..|+.|.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~d-vg~lt~lqil~lrd-ndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPD-VGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChh-hhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHh
Confidence 8888888887754 57777777888888888877663 24555 77888888888888 67777888888888888888
Q ss_pred eccCcCcCCCccccccC
Q 039403 195 VNPCAYLRKLPEELWCI 211 (249)
Q Consensus 195 l~~~~~~~~l~~~l~~l 211 (249)
+++|+++ -+|+.++.+
T Consensus 180 iqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANL 195 (264)
T ss_pred cccceee-ecChhhhhh
Confidence 8888865 466666544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=2.4e-15 Score=131.96 Aligned_cols=210 Identities=24% Similarity=0.250 Sum_probs=146.0
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+.+.++.+|+-++.|.+|+.+ ...| .+ ..+|..+..+.+|+.|++..+. ..+|+.....+.|+.|++..|. ..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N-~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~---L~ 323 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHN-RL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN---LP 323 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccch-hH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc---cc
Confidence 567889999999999999999 6666 66 5888899999999999955555 8888888889999999999884 33
Q ss_pred chhhhh-cCCC-CCcEEEEecCC--------C-----ceeeee-----------cCCCCCCCccEEEEEcccCCCCCccc
Q 039403 80 GVSKSL-CELH-KLECLKLVNES--------K-----LSRMVL-----------SEYQFPPSLIQLSLSNTELMEDPMPM 133 (249)
Q Consensus 80 ~~~~~l-~~l~-~L~~L~l~~~~--------~-----L~~l~l-----------~~~~~~~~L~~L~l~~~~~~~~~~~~ 133 (249)
.+|..+ .-.. ++..|+.+.+. + ++.+.+ .+.+ +++|++|++++|++.......
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHH
Confidence 333321 1111 12222222211 0 222211 4555 778888888888887444466
Q ss_pred ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC-CCccccccCc
Q 039403 134 LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR-KLPEELWCIK 212 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~ 212 (249)
+.++..|++|+++||.++. ++.. +..|+.|++|.... |.+...| ++..++.|+.+|++.|.+.. .++..... +
T Consensus 403 ~~kle~LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p 476 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTT--LPDT-VANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-P 476 (1081)
T ss_pred HhchHHhHHHhcccchhhh--hhHH-HHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-c
Confidence 7888888888888887754 2445 66778888887777 6666777 67788899999999988654 23433222 7
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+++|++||.
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 89999999997
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=7e-15 Score=120.58 Aligned_cols=210 Identities=21% Similarity=0.111 Sum_probs=134.0
Q ss_pred cccchhhhhcccccee-eecCcccC------CCCCCcCCCCccccccccccCC--CCcchhcCCCc---ccCeEEEecCc
Q 039403 7 DQSPEDIWMMQKLMHL-NFGCITLP------APPKNYFSSLKNLIFISALHPS--SCTPDILGRLP---SVQTLRISGNL 74 (249)
Q Consensus 7 ~~lp~~i~~l~~L~~L-l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~---~L~~L~l~~~~ 74 (249)
..+++.+...++++++ +..+ .+. ..++..+..+++|++|++.++. ...+..+..+. +|++|++++|.
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 41 KALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 4567777777888888 6665 333 1223345567788888865555 23444444444 48888888885
Q ss_pred ccccc----chhhhhcCC-CCCcEEEEecCCCceee-----eecCCCCCCCccEEEEEcccCCCCC----cccccCCCCC
Q 039403 75 SCYHS----GVSKSLCEL-HKLECLKLVNESKLSRM-----VLSEYQFPPSLIQLSLSNTELMEDP----MPMLERLPRL 140 (249)
Q Consensus 75 ~~~~~----~~~~~l~~l-~~L~~L~l~~~~~L~~l-----~l~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L 140 (249)
... .+...+..+ ++|+.|+++++. +..- .-.+.. +++|+.|++++|.+++.. +..+..+++|
T Consensus 120 --~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 195 (319)
T cd00116 120 --LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNL 195 (319)
T ss_pred --cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence 332 233455666 788888888865 4421 114555 678888999888876432 2334556789
Q ss_pred ceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCcccc--eeccCc----ccccccceeeccCcCcC----CCccc
Q 039403 141 QVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLDE--WTMGAG----ALPKLESLIVNPCAYLR----KLPEE 207 (249)
Q Consensus 141 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~----~~~~L~~L~l~~~~~~~----~l~~~ 207 (249)
+.|++++|.+.+.. +... +..+++|++|++++| .++. +..... ..+.|++|++++|.++. .+.+.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 99999888775432 1223 556788999999884 4542 111111 23689999999988752 23445
Q ss_pred cccCcCccEEEccCCc
Q 039403 208 LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 208 l~~l~~L~~l~l~~~~ 223 (249)
+..++.|+++++++|.
T Consensus 274 ~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 274 LAEKESLLELDLRGNK 289 (319)
T ss_pred HhcCCCccEEECCCCC
Confidence 5667889999999986
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.9e-13 Score=121.11 Aligned_cols=191 Identities=20% Similarity=0.195 Sum_probs=106.4
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++++++.+|..+. ++++.| +.+| .+. .+|..+. .+|++|++.+++ ..+|..+. .+|+.|++++|. .
T Consensus 185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~--L- 253 (754)
T PRK15370 185 LKILGLTTIPACIP--EQITTLILDNN-ELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR--I- 253 (754)
T ss_pred eCCCCcCcCCcccc--cCCcEEEecCC-CCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc--c-
Confidence 35667788887664 578888 7776 665 5665544 578888855555 55665443 367778887774 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
..+|..+. .+|+.|+++++. +..++..+ +++|+.|++++|.++ ..|..+. ++|+.|++.+|.+.. . +..
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L-P~~ 322 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPENL---PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L-PET 322 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCcccccc---CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C-Ccc
Confidence 34555443 467777777765 66543222 346777777777665 3333322 345566666555542 1 211
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
..++|+.|.+++ +.++.+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|
T Consensus 323 ---l~~sL~~L~Ls~-N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 323 ---LPPGLKTLEAGE-NALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRN 377 (754)
T ss_pred ---ccccceeccccC-CccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCC
Confidence 124555555555 34444443332 45555555555543 244332 235555555555
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=9.1e-15 Score=119.90 Aligned_cols=212 Identities=19% Similarity=0.110 Sum_probs=150.0
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCcc---ccccccccCC-C-----CcchhcCCC-cccCeEEEecCc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKN---LIFISALHPS-S-----CTPDILGRL-PSVQTLRISGNL 74 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~---L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~ 74 (249)
+..++..+..+++|+.| +++| .+....+..+..+.. |++|++.++. . .+...+..+ ++|+.|++++|.
T Consensus 70 ~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 70 LQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHhcCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34566788889999999 8888 776555555555555 9999976665 2 233455677 899999999996
Q ss_pred cccc----cchhhhhcCCCCCcEEEEecCCCceeee-----ecCCCCCCCccEEEEEcccCCCC----CcccccCCCCCc
Q 039403 75 SCYH----SGVSKSLCELHKLECLKLVNESKLSRMV-----LSEYQFPPSLIQLSLSNTELMED----PMPMLERLPRLQ 141 (249)
Q Consensus 75 ~~~~----~~~~~~l~~l~~L~~L~l~~~~~L~~l~-----l~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~ 141 (249)
.. ..++..+..+++|+.|+++++. +..-. ..+.. .++|+.|++++|.+++. ....+..+++|+
T Consensus 149 --l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 149 --LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred --CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 44 2345567788899999999866 55211 13455 67899999999988643 234567789999
Q ss_pred eEEeeccccCCceeeee--C-CCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCcCC----Cccccc
Q 039403 142 VLKLKRNSYLGRKLACA--G-SGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYLRK----LPEELW 209 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~----l~~~l~ 209 (249)
+|++++|.+.+...... . ....+.|+.|++++| .++ .+...+..++.|+.+++++|.+... +.+.+.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 99999998875321111 0 112479999999995 553 3344455668999999999998753 444555
Q ss_pred cC-cCccEEEccCCc
Q 039403 210 CI-KSLRKLDLHWPQ 223 (249)
Q Consensus 210 ~l-~~L~~l~l~~~~ 223 (249)
.. +.++++++.+++
T Consensus 304 ~~~~~~~~~~~~~~~ 318 (319)
T cd00116 304 EPGNELESLWVKDDS 318 (319)
T ss_pred hcCCchhhcccCCCC
Confidence 55 788999988774
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=1.5e-12 Score=116.30 Aligned_cols=197 Identities=20% Similarity=0.144 Sum_probs=105.9
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCc-cc-
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNL-SC- 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~-~~- 76 (249)
++++.++++|..+. ++|+.| +..| .+. .+|. .+++|++|++.++. ..+|.. .++|+.|++++|. ..
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N-~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCC-cCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhh
Confidence 35667788887765 367777 6665 554 3553 24667777744443 444422 2344444444442 00
Q ss_pred ---------------cccchhhhhcCCCCCcEEEEecCCCceeeee----------------cCCCCCCCccEEEEEccc
Q 039403 77 ---------------YHSGVSKSLCELHKLECLKLVNESKLSRMVL----------------SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 77 ---------------~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l----------------~~~~~~~~L~~L~l~~~~ 125 (249)
....+|. ..++|+.|+++++. +..++. .++.+..+|+.|++++|.
T Consensus 278 p~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 278 PALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ 353 (788)
T ss_pred hhchhhcCEEECcCCccccccc---cccccceeECCCCc-cccCCCCcccccccccccCccccccccccccceEecCCCc
Confidence 1111221 12456666665543 333211 111201246666666666
Q ss_pred CCCCCccccc-----------------CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc
Q 039403 126 LMEDPMPMLE-----------------RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP 188 (249)
Q Consensus 126 ~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (249)
++. +|.... ...+|+.|++++|.+.+ . +. ..++|+.|++++ |.++.+|.. ..
T Consensus 354 Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-L-P~----l~s~L~~LdLS~-N~LssIP~l---~~ 422 (788)
T PRK15387 354 LAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-L-PV----LPSELKELMVSG-NRLTSLPML---PS 422 (788)
T ss_pred cCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-C-CC----cccCCCEEEccC-CcCCCCCcc---hh
Confidence 552 221110 01245555555555442 1 11 124567777777 556666643 34
Q ss_pred cccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 189 KLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 189 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.|++++|.+. .+|..+..++.|+.+++++|+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 6788888888865 688888899999999999996
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1e-12 Score=117.54 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=129.0
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|++|+++++|..+. ++|++| +++| .+. .+|..+. .+|+.|++.+++ ..+|..+. .+|+.|++++|. .
T Consensus 206 Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~--L- 274 (754)
T PRK15370 206 LDNNELKSLPENLQ--GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK--I- 274 (754)
T ss_pred ecCCCCCcCChhhc--cCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc--c-
Confidence 46788999998775 589999 8877 665 5666543 478888866555 66666553 478888888774 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeec-----------------CC-CCCCCccEEEEEcccCCCCCcccccCCCCC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLS-----------------EY-QFPPSLIQLSLSNTELMEDPMPMLERLPRL 140 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~-----------------~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 140 (249)
..+|..+. ++|+.|+++++. ++.++.. ++ ...++|+.|++++|.++ ..|..+ .++|
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--~~sL 348 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASL--PPEL 348 (754)
T ss_pred CccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhh--cCcc
Confidence 34555442 467777777755 5543321 10 00345777777777665 344443 2578
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccc----ccCcCccE
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL----WCIKSLRK 216 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l----~~l~~L~~ 216 (249)
+.|++++|.+.. . +.. + .++|+.|++++ |.++.+|..+. ..|+.|++++|.+. .+|..+ ..++.+..
T Consensus 349 ~~L~Ls~N~L~~-L-P~~-l--p~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 349 QVLDVSKNQITV-L-PET-L--PPTITTLDVSR-NALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cEEECCCCCCCc-C-Chh-h--cCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 888888877653 2 322 2 35788888888 56777776543 36888888888865 455543 34578889
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+++.+|+
T Consensus 420 L~L~~Np 426 (754)
T PRK15370 420 IIVEYNP 426 (754)
T ss_pred EEeeCCC
Confidence 9999997
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=3.5e-14 Score=124.77 Aligned_cols=195 Identities=24% Similarity=0.239 Sum_probs=139.9
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
+|+.+ ++.+ .+. .+|.+++.+.+|+.+.+..+. ..+|..+..+.+|+.+.+.+| ..+.+|+....+++|++|+
T Consensus 242 nl~~~dis~n-~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cceeeecchh-hhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeee
Confidence 34444 4444 333 455566666666666633333 555555566666666666666 4455666666788888888
Q ss_pred EecCCCceeeee------------------cCCC-------CCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 96 LVNESKLSRMVL------------------SEYQ-------FPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 96 l~~~~~L~~l~l------------------~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
+..+. |..++. .+.. ..+.|+.|++.+|++++...+.+-...+|+.|++++|.+
T Consensus 317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 88865 544443 1111 033467788888999887778888889999999999987
Q ss_pred CCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 151 LGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. ++.+. +..+..|++|++++ |.++.+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|.
T Consensus 396 ~~-fpas~-~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 396 NS-FPASK-LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred cc-CCHHH-HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 64 22444 77899999999999 899999999999999999999999865 678 68899999999999996
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=1.4e-11 Score=110.12 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=117.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC---------------------CCcchh
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---------------------SCTPDI 58 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---------------------~~~~~~ 58 (249)
+.+|+++++|.. .++|++| +++| .+. .+|.. .++|+.|++.++. ..+|.
T Consensus 229 L~~N~Lt~LP~l---p~~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~- 299 (788)
T PRK15387 229 IPDNNLTSLPAL---PPELRTLEVSGN-QLT-SLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV- 299 (788)
T ss_pred ccCCcCCCCCCC---CCCCcEEEecCC-ccC-cccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc-
Confidence 356788888863 5788888 7777 665 34432 2344444432222 22322
Q ss_pred cCCCcccCeEEEecCcccccc--chhhhhcC----------C----CCCcEEEEecCCCceeeee---------------
Q 039403 59 LGRLPSVQTLRISGNLSCYHS--GVSKSLCE----------L----HKLECLKLVNESKLSRMVL--------------- 107 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~----------l----~~L~~L~l~~~~~L~~l~l--------------- 107 (249)
..++|+.|++++|. ... .+|..+.. + .+|+.|+++++. +..++.
T Consensus 300 --~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~L 374 (788)
T PRK15387 300 --LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRL 374 (788)
T ss_pred --cccccceeECCCCc--cccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCCCCCcccceehhhcccc
Confidence 13578888888875 222 11211111 1 367888887765 554331
Q ss_pred -cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcc
Q 039403 108 -SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGA 186 (249)
Q Consensus 108 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 186 (249)
.+.....+|+.|++++|.++ ..|.. .++|+.|++++|.+.. . +.. ..+|+.|++++ |.++.+|..+..
T Consensus 375 ~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-I-P~l----~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 375 TSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-L-PML----PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-C-Ccc----hhhhhhhhhcc-CcccccChHHhh
Confidence 12221346888889888887 34432 3679999999998864 2 322 34688899999 789999999999
Q ss_pred cccccceeeccCcCcCCCcccc
Q 039403 187 LPKLESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~l~~~l 208 (249)
+++|+.|++++|++.+..+..+
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCeEECCCCCCCchHHHHH
Confidence 9999999999999988665544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=5e-13 Score=107.63 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=66.0
Q ss_pred cccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccC
Q 039403 133 MLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 133 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
.+.++++|+++++++|+++... ..+ |.....++.|.+.. |.+..+.. .+.++..|+.|+|.+|+++.--|..+..+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~-~~a-Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIE-DGA-FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHhhcccceEeccCCCccchhh-hhh-hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 3677888999999988887654 556 67778888888888 66664443 34477888889998888876666677778
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
..|.++++-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888887664
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.5e-12 Score=109.43 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCCCCccccchhhhhccccc---ee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcc
Q 039403 1 MPSSYIDQSPEDIWMMQKLM---HL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~---~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 75 (249)
|++-+++++|..-.+ ..|. .. ++.| .|. ++|..++.+..|+.+.+..+. ..+|+.+.++..|++++++.|
T Consensus 57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrN-R~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-- 131 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRN-RFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-- 131 (722)
T ss_pred cccchhhcCCCcccc-ccccchhhhhcccc-ccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc--
Confidence 345566777765444 3333 23 6666 665 788888888899988866655 778888999999999999988
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
....+|..++.++ |+.|-++.+. +..++..+.. .++|..++.+.|.+. ..|..++.+.+|+.|++..|++.. +
T Consensus 132 -qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~-~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--l 204 (722)
T KOG0532|consen 132 -QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGL-LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--L 204 (722)
T ss_pred -hhhcCChhhhcCc-ceeEEEecCc-cccCCccccc-chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--C
Confidence 4455777788777 8888888877 8888777776 889999999999986 788889999999999999888754 3
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccc---ccCcCccEEEccCC
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEEL---WCIKSLRKLDLHWP 222 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l---~~l~~L~~l~l~~~ 222 (249)
+.. +..+ .|..|++++ |.+..+|..+..|..|++|.|.+|++.. -|..| +...-.++|++.-|
T Consensus 205 p~E-l~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PEE-LCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CHH-HhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 555 5544 589999997 8999999999999999999999999763 34433 23455678877766
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.6e-12 Score=98.39 Aligned_cols=183 Identities=20% Similarity=0.185 Sum_probs=132.5
Q ss_pred cccccccccCC---CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCc
Q 039403 42 NLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSL 116 (249)
Q Consensus 42 ~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L 116 (249)
.||+|+++..+ ..+...+..|.+|+.|.+.++. ..+.+...+.+-.+|+.++++.+..+.+..+ -+.. |..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s-cs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS-CSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHh-hhhH
Confidence 58888855544 3455566789999999999997 7788888899999999999998443444333 4566 8899
Q ss_pred cEEEEEcccCCCCCccc-ccC-CCCCceEEeecccc--CCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccccc
Q 039403 117 IQLSLSNTELMEDPMPM-LER-LPRLQVLKLKRNSY--LGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLE 191 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 191 (249)
..|.+++|....+.... +.. -+.+..|+++|+.- ........ ...||+|.+|++++|..++ +...++..++.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999999875422211 111 24788999987532 11111222 4679999999999998888 5666777899999
Q ss_pred ceeeccCcCcCCCcc---ccccCcCccEEEccCCcHHHHHhh
Q 039403 192 SLIVNPCAYLRKLPE---ELWCIKSLRKLDLHWPQTELRQRL 230 (249)
Q Consensus 192 ~L~l~~~~~~~~l~~---~l~~l~~L~~l~l~~~~~~~~~~~ 230 (249)
+|.++.|... .|. .+...|+|.+||+.||..+...++
T Consensus 342 ~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel 381 (419)
T KOG2120|consen 342 HLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMEL 381 (419)
T ss_pred eeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHH
Confidence 9999999732 343 467789999999999975543333
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=6.2e-10 Score=94.11 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=115.4
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCc-cccccccccCC-CCcchhcCCCcccCeEEEecCccccccchh
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLK-NLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS 82 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (249)
+..-+..+..+++++.| +.++ .+. .++...+.+. +|+.|++.++. ..++..++++++|+.|++++| ....++
T Consensus 105 ~~~~~~~~~~~~~l~~L~l~~n-~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~ 179 (394)
T COG4886 105 LRSNISELLELTNLTSLDLDNN-NIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLP 179 (394)
T ss_pred cccCchhhhcccceeEEecCCc-ccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc---hhhhhh
Confidence 33344455556667777 5554 443 5666666664 77777755444 556566677778888887777 344455
Q ss_pred hhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 83 KSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
...+..++|+.|+++++. ++.++..... +..|+.+.+++|... ..+..+..+.++..+.+.++++... +.. ++.
T Consensus 180 ~~~~~~~~L~~L~ls~N~-i~~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--~~~-~~~ 253 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNK-ISDLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--PES-IGN 253 (394)
T ss_pred hhhhhhhhhhheeccCCc-cccCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--cch-hcc
Confidence 555567777777777766 6665533223 445777777777533 4556666666777776666654331 233 556
Q ss_pred CCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 163 FPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
++.++.|++++ +.++.++. ++....++.|+++++.++.
T Consensus 254 l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 254 LSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccceecccc-cccccccc-ccccCccCEEeccCccccc
Confidence 66677777777 66666665 6667777777777776543
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.6e-10 Score=94.51 Aligned_cols=179 Identities=27% Similarity=0.283 Sum_probs=98.9
Q ss_pred CCccccccccccCC-CCcc--hhcCCCcccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeee--cCCC
Q 039403 39 SLKNLIFISALHPS-SCTP--DILGRLPSVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVL--SEYQ 111 (249)
Q Consensus 39 ~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~ 111 (249)
++.+|+...+-.+. +..+ .....|++++.|++++|- +... +......+++|+.|+++.+. +....- .-..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--FHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh--HHhHHHHHHHHHhcccchhccccccc-ccCCccccchhh
Confidence 46667766633333 3232 234567777777777773 2222 22445567777777777744 332221 1112
Q ss_pred CCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccc
Q 039403 112 FPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPK 189 (249)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 189 (249)
+++++.|.+++|.++.... ..+..+|+++.|.+.+|...... ... ...+..|+.|++++++.+. ......+.++.
T Consensus 196 -l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 -LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred -hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cch-hhhhhHHhhccccCCcccccccccccccccc
Confidence 5667777777777664333 33456677777777766421111 122 3345567777777744443 22344566777
Q ss_pred ccceeeccCcCcC-CCccc-----cccCcCccEEEccCCc
Q 039403 190 LESLIVNPCAYLR-KLPEE-----LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 190 L~~L~l~~~~~~~-~l~~~-----l~~l~~L~~l~l~~~~ 223 (249)
|+.|+++.|.+.. ..|+. .-.+++|++|+++.|+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 7777777776533 22332 2245677777777775
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.2e-10 Score=89.82 Aligned_cols=179 Identities=21% Similarity=0.149 Sum_probs=129.1
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--------------------------CCcchhcCC
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--------------------------SCTPDILGR 61 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------------~~~~~~l~~ 61 (249)
+|=.+..+++|..+ ++.|+. ..+.+-...-+-|+++. .+.. +.+...+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~-v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTIC-VHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccch--hheeceeecCchhheee-eecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence 45567778888888 777721 22333333345555555 2222 111122233
Q ss_pred CcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCc
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ 141 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 141 (249)
...|+++++++| ....+.+++.-.|.++.|+++.++ +..+. .++. +++|+.||+++|.++ ....+-.++.+++
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccccc-eeeeh-hhhh-cccceEeecccchhH-hhhhhHhhhcCEe
Confidence 467999999999 455667778888999999999988 77666 4666 889999999999887 4556667888999
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc--eeccCcccccccceeeccCcCcC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE--WTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+|.+++|.+.. .+. ++.+-+|..|++++ |.+.. -...++.+|+|+++.+.+|++.+
T Consensus 356 tL~La~N~iE~---LSG-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIET---LSG-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhh---hhh-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999988754 334 77888999999999 77773 34568899999999999999765
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=1.8e-11 Score=103.01 Aligned_cols=171 Identities=23% Similarity=0.290 Sum_probs=143.1
Q ss_pred CccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccE
Q 039403 40 LKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQ 118 (249)
Q Consensus 40 l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~ 118 (249)
+.--...++..+. .++|..+..+..|+.+.++.| ....+|..++++..|..++++.+. ++.++..+.. ++ |+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~-lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCD-LP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhccch-hhcCChhhhc-Cc-cee
Confidence 4444456644444 788888888888888888887 456688899999999999999988 8887776666 65 889
Q ss_pred EEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccC
Q 039403 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPC 198 (249)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 198 (249)
+-+++|+++ .+|..++-...|..|+.+.|.+.. ++.. ++.+.+|+.|.+.. |.+..+|.+++.++ |..||+++|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s--lpsq-l~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS--LPSQ-LGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhh--chHH-hhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccC
Confidence 999999987 788888888899999999888754 4677 88899999999999 78888999888555 999999999
Q ss_pred cCcCCCccccccCcCccEEEccCCc
Q 039403 199 AYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 199 ~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++. .+|..+.++..|++|-+.+||
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCC
Confidence 976 689999999999999999997
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=4.5e-11 Score=97.12 Aligned_cols=229 Identities=19% Similarity=0.192 Sum_probs=137.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCC-CCccccccccccCC---CCcch-hcCCCcccCeEEEecCccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-SLKNLIFISALHPS---SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~---~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
+....++-.....+|++++| +.+|.++++....+++ .+.+|+++++..|. ....+ ....+++|.++++++|...
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 34556666778899999999 8888555443333333 47889999866655 22222 2246889999999988622
Q ss_pred cccchhhhhcCCCCCcEEEEecCCC-----------------------------------------ceeeee--------
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESK-----------------------------------------LSRMVL-------- 107 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~-----------------------------------------L~~l~l-------- 107 (249)
....+......+..++.+...+..+ ++.+..
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 2222222223333333332222000 121111
Q ss_pred ----cCCCCCCCccEEEEEccc-CCCCCcccc-cCCCCCceEEeeccccCC-ceeeeeCCCCCCcccEEEeccCCcccce
Q 039403 108 ----SEYQFPPSLIQLSLSNTE-LMEDPMPML-ERLPRLQVLKLKRNSYLG-RKLACAGSGGFPELKVLHLKSMYWLDEW 180 (249)
Q Consensus 108 ----~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 180 (249)
.+...+++|+.+.++.|+ ++......+ ..++.|+.+++.++.... ..+... ...|+.|+.+.+++|..+++-
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhh
Confidence 222226677777777764 333233333 346678888777654322 122333 567899999999988777622
Q ss_pred -----eccCcccccccceeeccCcCcC-CCccccccCcCccEEEccCCcHHHHHhhcc
Q 039403 181 -----TMGAGALPKLESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQTELRQRLRT 232 (249)
Q Consensus 181 -----~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 232 (249)
......+..|+.+.+++|+.+. ..-+.+..++.|+++++-+|...+.+-++.
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 2223467789999999998543 444567788999999999998766666665
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=4.2e-10 Score=89.60 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=87.2
Q ss_pred hhhhhcccccee-eecCcccCCCCCCc----CCCCccccccccccCC-CC-----cc---------hhcCCCcccCeEEE
Q 039403 11 EDIWMMQKLMHL-NFGCITLPAPPKNY----FSSLKNLIFISALHPS-SC-----TP---------DILGRLPSVQTLRI 70 (249)
Q Consensus 11 ~~i~~l~~L~~L-l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~-----~~---------~~l~~l~~L~~L~l 70 (249)
+.+..+|+|+.| +++| -|....+.. +.++..|++|.+..|. +. +. .-.+.-++|+.+..
T Consensus 86 ~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 345566667777 6666 554333322 3346667777644444 11 11 11223456666666
Q ss_pred ecCc--cccccchhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEcccCCCC----CcccccCCCC
Q 039403 71 SGNL--SCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTELMED----PMPMLERLPR 139 (249)
Q Consensus 71 ~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~ 139 (249)
++|. ......+...+...+.|+.+.++.++ +..=.. .+.. |++|+.||+..|.++.. +...++.|++
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 6664 11122233445555666666665533 111110 3444 55666666666655421 2233445555
Q ss_pred CceEEeeccccCCceee----eeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcC
Q 039403 140 LQVLKLKRNSYLGRKLA----CAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAY 200 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~ 200 (249)
|+.+++++|.+...... +. -...|+|+.+.+.+ |.++ .+...+...+.|..|++++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al-~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDAL-KESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHH-hccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66666655554332200 01 12345555666555 3333 1222233445555666665554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-10 Score=92.88 Aligned_cols=87 Identities=25% Similarity=0.201 Sum_probs=52.8
Q ss_pred hhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC-----CCcchhc-------CCCcccCeEEEecC
Q 039403 11 EDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS-----SCTPDIL-------GRLPSVQTLRISGN 73 (249)
Q Consensus 11 ~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-----~~~~~~l-------~~l~~L~~L~l~~~ 73 (249)
+.+..+..++.+ +++| +|..+ +-+.+.+.+.|+.-++.+.- .++|+.+ ..+++|++++||+|
T Consensus 24 ~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 345567778888 8887 77443 33334456666666533322 3344333 35678888888888
Q ss_pred ccccccchh----hhhcCCCCCcEEEEecCC
Q 039403 74 LSCYHSGVS----KSLCELHKLECLKLVNES 100 (249)
Q Consensus 74 ~~~~~~~~~----~~l~~l~~L~~L~l~~~~ 100 (249)
. +....+ ..+++++.|++|.+..++
T Consensus 103 A--~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 103 A--FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred c--cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 6 444333 345677888888887743
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3e-10 Score=92.88 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCCCCccccch--hhhhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcc--hhcCCCcccCeEEEec
Q 039403 1 MPSSYIDQSPE--DIWMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTP--DILGRLPSVQTLRISG 72 (249)
Q Consensus 1 l~~~~l~~lp~--~i~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~ 72 (249)
|+++.++..+. ....|++++.| ++.| -|.. .+-.....+++|+.|++..+. .... ..-..+++|+.|.++.
T Consensus 128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 128 LDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNS 206 (505)
T ss_pred ecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEecc
Confidence 45677777773 67888888888 8877 5532 222334468888888865554 1111 1112577888888888
Q ss_pred Cccccccc-hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeecccc
Q 039403 73 NLSCYHSG-VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 73 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
|. .... +-..+..+|+|++|++.++..+-.-.-.... +..|+.|++++|.+.. .....++.++.|..|+++.+.+
T Consensus 207 CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 207 CG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred CC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh-hhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 86 5543 3345567888888888886311111113333 5678889998887653 2335667888888888887766
Q ss_pred CCceeeee----CCCCCCcccEEEeccCCcccceec--cCcccccccceeeccCcCcC
Q 039403 151 LGRKLACA----GSGGFPELKVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 151 ~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+--.+.. ....+++|++|++.. |.+.+|+. .+..+++|++|.+..|.++.
T Consensus 284 ~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 284 ASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccccccc
Confidence 43221111 024578899999888 67766654 34466788888888887654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=7.9e-10 Score=81.89 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=40.5
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L 190 (249)
+.+|+.|+++.|.++. ...+..++.|+.|++.+|.++.-. ... ...+++|+.|.+++ |.+.++. ..+..+++|
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~-~~l-~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSIS-EGL-DKNLPNLQELYLSN-NKISDLNELEPLSSLPKL 115 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHH-HHH-TT--EEE-TT-S---SCCCCGGGGG-TT-
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccc-cch-HHhCCcCCEEECcC-CcCCChHHhHHHHcCCCc
Confidence 4556666666666642 344555666777777666665421 111 12466777777776 5555332 234467778
Q ss_pred cceeeccCcCcCCC---ccccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLRKL---PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~~l---~~~l~~l~~L~~l~l~~~~ 223 (249)
+.|++.+|+++..- ...+..+|+|+.||-....
T Consensus 116 ~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 116 RVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 88888888765421 1245567888888766553
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=1.9e-10 Score=93.03 Aligned_cols=193 Identities=21% Similarity=0.204 Sum_probs=130.9
Q ss_pred CCCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchh-cCCC-------------
Q 039403 1 MPSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDI-LGRL------------- 62 (249)
Q Consensus 1 l~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-l~~l------------- 62 (249)
|..|.|+.||+. ++.+++|+.| ++.| .+...-|++|..+..+..|-+.+++ ..+|.. |+++
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred eccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 356889999985 8999999999 8888 8877778888888888887766644 445442 3334
Q ss_pred -----------cccCeEEEecCccccccchhh-hhcCCCCCcEEEEecCCC-----------------------------
Q 039403 63 -----------PSVQTLRISGNLSCYHSGVSK-SLCELHKLECLKLVNESK----------------------------- 101 (249)
Q Consensus 63 -----------~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~----------------------------- 101 (249)
++|..|.+.+|. ...++. .+..+.+++.+.+..+.-
T Consensus 153 ~Cir~~al~dL~~l~lLslyDn~---~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYDNK---IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred cchhHHHHHHhhhcchhcccchh---hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 445555555442 111111 222223333322222110
Q ss_pred ------------------ceeeee---------------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecc
Q 039403 102 ------------------LSRMVL---------------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 102 ------------------L~~l~l---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (249)
++.+.- .|.. +++|+.+++++|+++..-..++....+++.|.+..|
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 001100 4667 899999999999999877788999999999999999
Q ss_pred ccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCc
Q 039403 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
++..-. ... +..+..|+.|++.+ |.++ -.|-.+.....|.+|++-.|++.
T Consensus 309 ~l~~v~-~~~-f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 309 KLEFVS-SGM-FQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hHHHHH-HHh-hhccccceeeeecC-CeeEEEecccccccceeeeeehccCccc
Confidence 875322 334 77888999999999 7787 44556678889999999888764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=5.8e-09 Score=77.33 Aligned_cols=104 Identities=27% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCccEEEEEcccCCCCCccccc-CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccC-cccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLE-RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L 190 (249)
+.+++.|+++++.++. ...++ .+.+|+.|++++|.+..- .. +..++.|++|++++ |.++.+...+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT-----TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cC-ccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 5578999999999863 45565 578999999999998752 23 66789999999999 8888886544 368999
Q ss_pred cceeeccCcCcC-CCccccccCcCccEEEccCCc
Q 039403 191 ESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 191 ~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+++|.+.. .--..+..+++|+.+++.+||
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 999999999754 112457789999999999998
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=5.9e-09 Score=88.16 Aligned_cols=165 Identities=25% Similarity=0.290 Sum_probs=125.7
Q ss_pred CCCCCccccchhhhhcc-cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQ-KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~-~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+.++.++++|..+...+ +|+.| +..+ .+. .+|..++.+++|+.|++..+. ..++...+..++|+.++++++ .
T Consensus 123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N---~ 197 (394)
T COG4886 123 LDNNNITDIPPLIGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN---K 197 (394)
T ss_pred cCCcccccCccccccchhhccccccccc-chh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC---c
Confidence 45789999999999995 99999 8888 655 566678999999999966666 788887778999999999999 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+|........|+.+.++++. .......+.. +..+..+.+..+++. ..+..++.+++++.|++.+|.+....
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~-~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~--- 271 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNS-IIELLSSLSN-LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS--- 271 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCc-ceecchhhhh-cccccccccCCceee-eccchhccccccceeccccccccccc---
Confidence 55666665566679999998874 3333335556 667777777777765 34677788888999999888876532
Q ss_pred eCCCCCCcccEEEeccCCccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~ 178 (249)
. ++...+++.+++++ +.+.
T Consensus 272 ~-~~~~~~l~~L~~s~-n~~~ 290 (394)
T COG4886 272 S-LGSLTNLRELDLSG-NSLS 290 (394)
T ss_pred c-ccccCccCEEeccC-cccc
Confidence 3 55678888999888 4443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.72 E-value=1.6e-08 Score=90.03 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=86.3
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCccccccccee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLI 194 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 194 (249)
++.|+++++.+.+..|..++.+++|+.|++++|.+.+.. +.. ++.+++|+.|++++ |.+. .+|..++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~-~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPS-LGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChH-HhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEE
Confidence 667888888888888888899999999999999888766 666 78889999999998 4555 7888888999999999
Q ss_pred eccCcCcCCCccccccC-cCccEEEccCCc
Q 039403 195 VNPCAYLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 195 l~~~~~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
+++|.+.+.+|..++.. ..+..+++.+|+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999888888877653 456677777774
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=5.4e-08 Score=89.07 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=72.9
Q ss_pred ccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchh
Q 039403 6 IDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS 82 (249)
Q Consensus 6 l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (249)
+..++.. +..+|.|+.| +++| .-.+++|..++.+-+|++|++.+.. ..+|..++++..|.+|++..+. ....++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~--~l~~~~ 635 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG--RLESIP 635 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc--cccccc
Confidence 5555554 7779999999 8887 5566899999999999999966666 8899999999999999998876 555556
Q ss_pred hhhcCCCCCcEEEEec
Q 039403 83 KSLCELHKLECLKLVN 98 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~ 98 (249)
.....+++|++|.+..
T Consensus 636 ~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPR 651 (889)
T ss_pred chhhhcccccEEEeec
Confidence 6777789999998877
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.4e-08 Score=79.84 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
.|+.++++++. +..++-++.- .|.++.|+++.|.+.. ...+..+++|..|++++|.++.-. .+ -..+.+++.|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL-~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~--Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKL-APKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECV--GW-HLKLGNIKTL 357 (490)
T ss_pred hhhhccccccc-hhhhhhhhhh-ccceeEEeccccceee--ehhhhhcccceEeecccchhHhhh--hh-HhhhcCEeee
Confidence 34445555544 4443333333 5555666666655542 233555556666666655543311 11 1123455556
Q ss_pred EeccCCcccceeccCcccccccceeeccCcCcC-CCccccccCcCccEEEccCCc
Q 039403 170 HLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR-KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++ |.+.++. .+..+-+|..|++++|++-. +-...++.+|-|+.+.+.+||
T Consensus 358 ~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhh-hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5555 3332211 22334456666666666422 112346666666777776666
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.3e-10 Score=87.50 Aligned_cols=179 Identities=19% Similarity=0.173 Sum_probs=118.7
Q ss_pred cccee-eecCcccC-CCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc-chhhhhcCCCCCc
Q 039403 18 KLMHL-NFGCITLP-APPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS-GVSKSLCELHKLE 92 (249)
Q Consensus 18 ~L~~L-l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~ 92 (249)
.|++| ++.. .++ ..+..-+..+.+|+.|.+.+.. +.+...+..-.+|+.++++.+. ++.+ .+.-.+.+|++|.
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence 35666 5554 332 2233445678899999855555 5677777888899999999886 2222 2334567899999
Q ss_pred EEEEecCCCcee-eeecCCCCCCCccEEEEEcccC--CCCCcc-cccCCCCCceEEeeccccCCceeeeeCCCCCCcccE
Q 039403 93 CLKLVNESKLSR-MVLSEYQFPPSLIQLSLSNTEL--MEDPMP-MLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168 (249)
Q Consensus 93 ~L~l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~--~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 168 (249)
.|+++++...+. +...++..-++|+.|.++++.- ...... -..+|+++.+||++++.-........ +..++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchhee
Confidence 999999542111 1112222134788888888742 112222 24789999999999865433333445 678899999
Q ss_pred EEeccCCccc-ceeccCcccccccceeeccCc
Q 039403 169 LHLKSMYWLD-EWTMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 169 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 199 (249)
++++.|..+. +....+...|.|.+|++.+|-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999998776 455567788999999998875
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=6.7e-08 Score=88.49 Aligned_cols=118 Identities=24% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCCccccchhhhhcccccee-eecCcc-cCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCIT-LPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++.+..++.. ..+++|++| +..+.. +.......+..++.|+.|++.++. +.+|..++++-+|++|+++++ ..
T Consensus 532 ~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t---~I 607 (889)
T KOG4658|consen 532 NNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT---GI 607 (889)
T ss_pred ccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC---Cc
Confidence 3445555555 345578888 776622 332333346679999999976655 789999999999999999987 45
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEccc
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~ 125 (249)
..+|..+.++..|.+|++..++.+..++-.... +.+|++|.+....
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSA 653 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhh-cccccEEEeeccc
Confidence 578899999999999998875433333223334 6677777765543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.8e-07 Score=83.36 Aligned_cols=105 Identities=23% Similarity=0.188 Sum_probs=74.8
Q ss_pred ccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 19 LMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 19 L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
++.| +.++ .+.+.+|..++.+++|+.|++.++. +.+|..++.+++|+.|++++|. ..+.+|..++++++|+.|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~--lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS--FNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC--CCCCCchHHhcCCCCCEEE
Confidence 6667 7776 7777888888888888888866555 5778788888888888888887 7777888888888888888
Q ss_pred EecCCCcee-eeecCCCCCCCccEEEEEcccCC
Q 039403 96 LVNESKLSR-MVLSEYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 96 l~~~~~L~~-l~l~~~~~~~~L~~L~l~~~~~~ 127 (249)
++++. +.. ++..+.....++..+++.+|...
T Consensus 497 Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 497 LNGNS-LSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcCCc-ccccCChHHhhccccCceEEecCCccc
Confidence 88865 442 22122221234556777776543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=2.2e-07 Score=56.68 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=40.0
Q ss_pred CcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 164 PELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
|+|++|++++ +.++.++. .+..+++|++|++++|.+..--+..+..+++|+++++++|.
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4577777777 56777764 44567777777777777654333466777777777777764
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=7.2e-07 Score=54.35 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.5
Q ss_pred ccCeEEEecC
Q 039403 64 SVQTLRISGN 73 (249)
Q Consensus 64 ~L~~L~l~~~ 73 (249)
+|++|++++|
T Consensus 2 ~L~~L~l~~n 11 (61)
T PF13855_consen 2 NLESLDLSNN 11 (61)
T ss_dssp TESEEEETSS
T ss_pred cCcEEECCCC
Confidence 3444444444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=3.1e-09 Score=92.32 Aligned_cols=124 Identities=26% Similarity=0.234 Sum_probs=85.5
Q ss_pred CcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEE
Q 039403 91 LECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLH 170 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 170 (249)
|...+++.+. |..++-++.- ++.++.|+++.|++.. ...+..|++|++||+++|.+..-- ... ...|. |..|.
T Consensus 166 L~~a~fsyN~-L~~mD~SLql-l~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp-~l~-~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQL-LPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVP-QLS-MVGCK-LQLLN 238 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHH-HHHhhhhccchhhhhh--hHHHHhcccccccccccchhcccc-ccc-hhhhh-heeee
Confidence 3333444433 4433334444 7788999999999874 348888999999999998876421 112 33454 89999
Q ss_pred eccCCcccceeccCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 171 LKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
+++ |.++++.. +.++.+|+.||++.|-+.+.- -..++.+..|..|.+.|||
T Consensus 239 lrn-N~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRN-NALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecc-cHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 998 66665543 557889999999999876521 2346678888999999986
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=2.6e-08 Score=86.77 Aligned_cols=124 Identities=23% Similarity=0.181 Sum_probs=85.3
Q ss_pred cCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCccc-ccCCCCCceE
Q 039403 65 VQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPM-LERLPRLQVL 143 (249)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 143 (249)
|...+.++| ....+..++.-++.++.|+++++. ++.+. .+.. |++|++||+++|.+. ..|.. ...|. |..|
T Consensus 166 L~~a~fsyN---~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYN---RLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred Hhhhhcchh---hHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHh-cccccccccccchhc-cccccchhhhh-heee
Confidence 444444444 223344556667889999999977 77666 6666 889999999999886 33322 23343 8999
Q ss_pred EeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCcCc
Q 039403 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 201 (249)
.+.+|.++. ... +..+++|..|+++. |-+.+.. ..++.+..|+.|.|.+|++.
T Consensus 238 ~lrnN~l~t---L~g-ie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTT---LRG-IENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHh---hhh-HHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999888754 223 66788999999998 5555322 22456778999999999864
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=6.6e-07 Score=76.19 Aligned_cols=126 Identities=25% Similarity=0.210 Sum_probs=79.0
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
+..++.+ +..+ .+. .+-..++.+.+|+.|++.++. ..+...+..+++|++|++++|. . ..+ ..+..++.|+.
T Consensus 71 l~~l~~l~l~~n-~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I-~~i-~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIA-KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--I-TKL-EGLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchh-hhh-hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc--c-ccc-cchhhccchhh
Confidence 3444444 4444 333 234446777888888855444 4444436778888888888884 2 333 23556666888
Q ss_pred EEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccC
Q 039403 94 LKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 94 L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 151 (249)
|++.++. +..+. .+.. ++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.
T Consensus 145 L~l~~N~-i~~~~-~~~~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNL-ISDIS-GLES-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCc-chhcc-CCcc-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 8888876 66554 4555 6778888888887763222 1 466677777777776654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=8e-07 Score=75.70 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccch
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
.+.++.+-..+..+++++.| +.+| .+. .+...+..+++|++|++..+.-.-...+..++.|+.|++++|. ...+
T Consensus 81 ~n~i~~~~~~l~~~~~l~~l~l~~n-~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~---i~~~ 155 (414)
T KOG0531|consen 81 QNLIAKILNHLSKLKSLEALDLYDN-KIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL---ISDI 155 (414)
T ss_pred hhhhhhhhcccccccceeeeecccc-chh-hcccchhhhhcchheeccccccccccchhhccchhhheeccCc---chhc
Confidence 34444444446666667776 5555 444 2332255677777777444332222334556667777777764 2222
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeec-CCCCCCCccEEEEEcccC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLS-EYQFPPSLIQLSLSNTEL 126 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~-~~~~~~~L~~L~l~~~~~ 126 (249)
..+..+++|+.++++++. +..+... ... +..++.+.+..|.+
T Consensus 156 -~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~-~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNR-IVDIENDELSE-LISLEELDLGGNSI 198 (414)
T ss_pred -cCCccchhhhcccCCcch-hhhhhhhhhhh-ccchHHHhccCCch
Confidence 223335666666666633 2222211 133 45555555555544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=3.7e-07 Score=63.83 Aligned_cols=104 Identities=24% Similarity=0.195 Sum_probs=77.8
Q ss_pred ccEEEEEcccCCC--CCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccce
Q 039403 116 LIQLSLSNTELME--DPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193 (249)
Q Consensus 116 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 193 (249)
+-.+++++|++.. +.+..+.+...|...++++|.+.+.- ... ...++.++.+++++ |.++++|.++..++.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp-~kf-t~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP-KKF-TIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC-HHH-hhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 4456777776541 23344566678888899988775421 333 45677899999999 8999999999999999999
Q ss_pred eeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 194 IVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 194 ~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++++|++.. .|+.+..+.++..|+..++.
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence 999999764 56666668888888887773
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=4.9e-06 Score=74.63 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=36.7
Q ss_pred CcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCC
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRL 140 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L 140 (249)
+|.|+.|.+++-. ...+.+.....++++|..||+++++ +..+. .+.. +++|+.|.+.+-.+.. .....+..+++|
T Consensus 147 LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~-GIS~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-ISNLS-GISR-LKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-ccCcH-HHhc-cccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 4555555555432 1112233333455555555555544 33332 3344 4455555444444432 233344455555
Q ss_pred ceEEeec
Q 039403 141 QVLKLKR 147 (249)
Q Consensus 141 ~~L~l~~ 147 (249)
+.||++.
T Consensus 223 ~vLDIS~ 229 (699)
T KOG3665|consen 223 RVLDISR 229 (699)
T ss_pred Ceeeccc
Confidence 5555544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=4.9e-06 Score=64.90 Aligned_cols=208 Identities=20% Similarity=0.207 Sum_probs=127.5
Q ss_pred cchhhhhcccccee-eecCcccCCCCC----CcCCCCccccccccccCC-----CCcc-------hhcCCCcccCeEEEe
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPK----NYFSSLKNLIFISALHPS-----SCTP-------DILGRLPSVQTLRIS 71 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-----~~~~-------~~l~~l~~L~~L~l~ 71 (249)
+-+.+..+..+..+ +++| +|..+-. ..+.+-.+|+..++.+.- .+++ +.+-.||+|+.+++|
T Consensus 22 v~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 34456668888899 9998 8865433 334455667666643322 2333 334578999999999
Q ss_pred cCccccccchh----hhhcCCCCCcEEEEecCCCceee------------ee--cCCCCCCCccEEEEEcccCCCCCcc-
Q 039403 72 GNLSCYHSGVS----KSLCELHKLECLKLVNESKLSRM------------VL--SEYQFPPSLIQLSLSNTELMEDPMP- 132 (249)
Q Consensus 72 ~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~L~~l------------~l--~~~~~~~~L~~L~l~~~~~~~~~~~- 132 (249)
.|. +...+| ..+++-+.|.+|.++.++ +--+ .. ..+. -|.|+.+....|++......
T Consensus 101 DNA--fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~-kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 101 DNA--FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAAD-KPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccc--cCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhcc-CCCceEEEeccchhccCcHHH
Confidence 997 655555 345678899999999855 2211 11 4455 67788888888877532111
Q ss_pred ---cccCCCCCceEEeeccccCCceee---eeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCc
Q 039403 133 ---MLERLPRLQVLKLKRNSYLGRKLA---CAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 133 ---~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
.+..-..|+.+.+..|.+...... ..|...+.+|+.|++.+ |.++ .+...++.++.|+.|.+..|-+.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 122224778888887777544200 01145677888888888 5554 33445556677888888888754
Q ss_pred C-CCccccc-----cCcCccEEEccCC
Q 039403 202 R-KLPEELW-----CIKSLRKLDLHWP 222 (249)
Q Consensus 202 ~-~l~~~l~-----~l~~L~~l~l~~~ 222 (249)
. ...+.+. ..|+|..|...+|
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchh
Confidence 3 2222222 2455666666666
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=4.1e-06 Score=75.12 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=86.5
Q ss_pred cccccee-eecCcccCCCCCCcCCC-CccccccccccCC---CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCC
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSS-LKNLIFISALHPS---SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHK 90 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (249)
-.+|++| +.+...+....+..++. +|+|+.|.+.+-. +++-....++|||..||++++. . ..+ ..++++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I-~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--I-SNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--c-cCc-HHHhcccc
Confidence 4578888 77765555555555554 8899999855544 4455566789999999999984 3 333 57888999
Q ss_pred CcEEEEecCCCceeee-e-cCCCCCCCccEEEEEcccCCCCCccc-------ccCCCCCceEEeeccccCCc
Q 039403 91 LECLKLVNESKLSRMV-L-SEYQFPPSLIQLSLSNTELMEDPMPM-------LERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~-l-~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~ 153 (249)
|+.|.+..-. ++.-. + .+.+ +++|+.||+|....... +.. -..+|+|+.||.++..+.+.
T Consensus 197 Lq~L~mrnLe-~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 197 LQVLSMRNLE-FESYQDLIDLFN-LKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHHhccCCC-CCchhhHHHHhc-ccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9888887722 22111 1 5566 88999999998765422 111 13467777777776655544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.1e-05 Score=63.71 Aligned_cols=174 Identities=22% Similarity=0.265 Sum_probs=95.9
Q ss_pred CccccccccccCC----CCcchhcCCCcccCeEEEecCccccccchhhhh-cCCCCCcEEEEecCCCceeeee--cCCCC
Q 039403 40 LKNLIFISALHPS----SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSL-CELHKLECLKLVNESKLSRMVL--SEYQF 112 (249)
Q Consensus 40 l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~L~~l~l--~~~~~ 112 (249)
.+.++.|++.++. +++...+.++|.|+.|+++.|. ....+ ..+ ....+|+.|-+.++. |.+-.. ....
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~--L~s~I-~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~- 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS--LSSDI-KSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDD- 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc--CCCcc-ccCcccccceEEEEEcCCC-CChhhhhhhhhc-
Confidence 5566666633333 3344455667777777777664 22211 111 245566666666644 333222 4455
Q ss_pred CCCccEEEEEcccCC-----CCCcccc------------------------cCCCCCceEEeeccccCCceeeeeCCCCC
Q 039403 113 PPSLIQLSLSNTELM-----EDPMPML------------------------ERLPRLQVLKLKRNSYLGRKLACAGSGGF 163 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~-----~~~~~~~------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (249)
+|.++.+.++.|.+. ......+ ..++++..+-+..|.+........ +..+
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~~ 223 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEPF 223 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCCC
Confidence 667777777666321 0000000 113455555555554433221222 4556
Q ss_pred CcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCc----c--ccccCcCccEEEcc
Q 039403 164 PELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLP----E--ELWCIKSLRKLDLH 220 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~----~--~l~~l~~L~~l~l~ 220 (249)
|.+..|+++. +++.+|. .++..+++|+.|.++++++...+. . -++++++++.|+=+
T Consensus 224 p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred Ccchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7777778877 6676543 456788999999999999765432 1 25677888877654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.1e-05 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=23.3
Q ss_pred cccEEEeccCCcccceeccCcccccccceeeccCcCc
Q 039403 165 ELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
+|++|++++ +.+++++..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCC
Confidence 566777777 566666666667777777777777654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=2.7e-06 Score=66.36 Aligned_cols=189 Identities=14% Similarity=0.052 Sum_probs=95.7
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCc----CCCCccccccccccCC-C-----Ccchhc---------CCCcccCeE
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNY----FSSLKNLIFISALHPS-S-----CTPDIL---------GRLPSVQTL 68 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~-----~~~~~l---------~~l~~L~~L 68 (249)
+.+.+.+||+|+.. +++| .|..+.|.. +++-..|.+|.+..+. + .+.+.+ .+-|.|+.+
T Consensus 84 Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 44566778888888 7777 776555533 4566777777743333 1 122222 123567777
Q ss_pred EEecCc--cccccchhhhhcCCCCCcEEEEecCCCceeeee------cCCCCCCCccEEEEEcccCCCC----CcccccC
Q 039403 69 RISGNL--SCYHSGVSKSLCELHKLECLKLVNESKLSRMVL------SEYQFPPSLIQLSLSNTELMED----PMPMLER 136 (249)
Q Consensus 69 ~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~ 136 (249)
...+|. .+........+....+|+.+.+..++ ++.-.+ .+.- +.+|+.||+..|.++-. +...+..
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcc
Confidence 777764 11111122334444567777766654 332211 2223 55677777777765422 2233455
Q ss_pred CCCCceEEeeccccCCceeeee----CCCCCCcccEEEeccCCccc-c------eec-cCcccccccceeeccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACA----GSGGFPELKVLHLKSMYWLD-E------WTM-GAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~------~~~-~~~~~~~L~~L~l~~~~~~ 201 (249)
|+.|+.|++.+|-+........ .-..+|+|..|.... +... + ++. .-..+|-|..|.+.+|++.
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y-ne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY-NERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch-hhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 6666777766665543321111 011345666666555 2222 1 111 1124566666666666643
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=2.2e-05 Score=62.17 Aligned_cols=110 Identities=27% Similarity=0.295 Sum_probs=67.8
Q ss_pred cCCCCccccccccccCC---CCcchhcC-CCcccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeeecC
Q 039403 36 YFSSLKNLIFISALHPS---SCTPDILG-RLPSVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVLSE 109 (249)
Q Consensus 36 ~~~~l~~L~~L~l~~~~---~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l~~ 109 (249)
.++....++-|.+.++. ......++ .++.++.+++.+|. ..+. +...+.++|.|+.|+++.+. |....-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~--iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~l 116 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL--ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSL 116 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch--hccHHHHHHHHhcCccceEeeccCCc-CCCccccC
Confidence 34444444455534444 22223333 57899999999996 4432 44567789999999999966 54422122
Q ss_pred -CCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccc
Q 039403 110 -YQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 110 -~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 149 (249)
.. ..+|+.+-+.+.++.= ..-..+..+|.++.|.++.|.
T Consensus 117 p~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 117 PLP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 13 4578888888876642 222344566777777777763
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=1.4e-06 Score=71.52 Aligned_cols=181 Identities=20% Similarity=0.090 Sum_probs=88.7
Q ss_pred cccccccccCC----CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCc
Q 039403 42 NLIFISALHPS----SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSL 116 (249)
Q Consensus 42 ~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L 116 (249)
.|+.|.+.++. ..+-....++++++.|.+.+|.......+-..-..+++|+++++.....++...+ .+...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 66777755555 2233334578888888888775111112223334577788877776222444433 122227788
Q ss_pred cEEEEEccc-CCCCCccc-ccCCCCCceEEeeccccCCc-eeeeeCCCCCCcccEEEeccCCccc--ceeccCccccccc
Q 039403 117 IQLSLSNTE-LMEDPMPM-LERLPRLQVLKLKRNSYLGR-KLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLE 191 (249)
Q Consensus 117 ~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~ 191 (249)
+++.+++|. +.+..... ...+..++.+...||.-.+. .+... -+.++.+..+++..|+.++ ++......+..|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH-hccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888774 33222222 23344455554444321111 11111 2344455555555655555 2222333555666
Q ss_pred ceeeccCcCcCCCc-ccc-ccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRKLP-EEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~l~-~~l-~~l~~L~~l~l~~~~ 223 (249)
.++.++|...++.+ ..+ .++++|+.+.+++|.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 66666655322111 112 245666666666664
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=9.6e-05 Score=41.54 Aligned_cols=38 Identities=37% Similarity=0.532 Sum_probs=25.4
Q ss_pred CCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
++|++|++++|.++ ..+..+++|++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777777777776 455557777777787777777653
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00037 Score=52.24 Aligned_cols=105 Identities=27% Similarity=0.274 Sum_probs=73.6
Q ss_pred CCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec--cCccccccc
Q 039403 114 PSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM--GAGALPKLE 191 (249)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~ 191 (249)
.....+|++.|.+. ....+..++.|.+|.+..|.++.-. +.. -..+++|+.|.+.+ |++.++.. -+..||.|+
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~-p~L-~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRID-PDL-DTFLPNLKTLILTN-NSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeec-cch-hhhccccceEEecC-cchhhhhhcchhccCCccc
Confidence 35667788888664 3466777888888888888876543 333 34567888999988 66664433 244788999
Q ss_pred ceeeccCcCcCC---CccccccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRK---LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~---l~~~l~~l~~L~~l~l~~~~ 223 (249)
.|.+-+|++... -.-.+..+|+|+.+|++.-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999886542 11246678999999998874
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00066 Score=50.92 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=72.7
Q ss_pred cccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCC-CCcccccCCCCCc
Q 039403 63 PSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQ 141 (249)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 141 (249)
-+...+++++|. ... + ..|..+++|..|.+..+. +.++...+..+++.|+.|.+.+|.+.. .....+..|+.|+
T Consensus 42 d~~d~iDLtdNd--l~~-l-~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDND--LRK-L-DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccc--hhh-c-ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 366778888875 222 2 245567888888888877 777776555546788888888887653 3456677888888
Q ss_pred eEEeeccccCCce--eeeeCCCCCCcccEEEecc
Q 039403 142 VLKLKRNSYLGRK--LACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 142 ~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 173 (249)
+|.+-+|...... ..-. +..+|+|+.|++..
T Consensus 117 ~Ltll~Npv~~k~~YR~yv-l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYV-LYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEE-EEecCcceEeehhh
Confidence 8888888765422 1123 45678888888776
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=5.5e-05 Score=53.18 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCCccccchhhhhcccccee----eecCcccCCCCCCcCC-CCccccccccccCC-CCcchhcCCCcccCeEEEecCc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL----NFGCITLPAPPKNYFS-SLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNL 74 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L----l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 74 (249)
|+++.+..+++....+....+| +++| .|. .+|+.+. ..+.++.|++..+. ..+|.++..++.|+.|+++.|
T Consensus 34 Lssc~lm~i~davy~l~~~~el~~i~ls~N-~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N- 110 (177)
T KOG4579|consen 34 LSSCQLMYIADAVYMLSKGYELTKISLSDN-GFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN- 110 (177)
T ss_pred cccchhhHHHHHHHHHhCCceEEEEecccc-hhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-
Confidence 3566666677766555555554 6666 665 3444433 45688889844444 789999999999999999988
Q ss_pred cccccchhhhhcCCCCCcEEEEecCC
Q 039403 75 SCYHSGVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.....|..+..+.++.+|+..++.
T Consensus 111 --~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 111 --PLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred --ccccchHHHHHHHhHHHhcCCCCc
Confidence 445566667667777777776643
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.09 E-value=0.0041 Score=52.39 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=23.2
Q ss_pred hcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecC
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGN 73 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 73 (249)
.++++++| +..| .+. .+|. -..+|+.|.+.+|. ..+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c-~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDC-DIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCC-CCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 35555555 5544 332 3331 11245555544433 3333322 135555555555
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00038 Score=54.08 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred CCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--
Q 039403 30 PAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-- 107 (249)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-- 107 (249)
.+.+..-......|+.|++.++.-.-...+..+++|+.|.++.|.......+......+++|++++++++. ++.+.-
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~ 110 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR 110 (260)
T ss_pred CCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc
Confidence 33444444456677777644444112233456889999999988311455555555667999999999876 554331
Q ss_pred cCCCCCCCccEEEEEcccCCCC---CcccccCCCCCceEEeec
Q 039403 108 SEYQFPPSLIQLSLSNTELMED---PMPMLERLPRLQVLKLKR 147 (249)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~ 147 (249)
.+.. +.+|..|++..|..+.. --..+..+++|++|+-..
T Consensus 111 pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 3444 66788888888866531 112345567788877543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00052 Score=53.39 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCccEEEEEcc--cCCCCCcccccCCCCCceEEeecccc
Q 039403 113 PPSLIQLSLSNT--ELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 113 ~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
+++|+.|.++.| +....+......+++|+++++++|.+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 445555555555 33323333333344455555544443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.63 E-value=0.00028 Score=61.13 Aligned_cols=133 Identities=21% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecC-CCceeee----ecCCCCCCCccEEEEEccc-CCCCCcccc
Q 039403 61 RLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNE-SKLSRMV----LSEYQFPPSLIQLSLSNTE-LMEDPMPML 134 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~L~~l~----l~~~~~~~~L~~L~l~~~~-~~~~~~~~~ 134 (249)
.+++|+.+.+.++.......+......++.|+.|++++. ....... ..... +++|+.++++++. +++.....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh-cCCcCccchhhhhccCchhHHHH
Confidence 467777777777751111124455667777888777651 1000000 02233 6677788887776 554444444
Q ss_pred cC-CCCCceEEeeccc-cCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccceee
Q 039403 135 ER-LPRLQVLKLKRNS-YLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIV 195 (249)
Q Consensus 135 ~~-l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l 195 (249)
.. |++|+.|.+..+. +++..+... ...|+.|++|+++.|..++ .+......+++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 33 7788888866665 454443333 4567778888888776664 23333334555444443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.46 E-value=0.0063 Score=51.25 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred hhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 83 KSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
..+..+.+++.|+++++. +..++ .+.++|+.|.+++|.--...|..+ .++|++|++.+|...... |
T Consensus 46 ~r~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P------ 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCD-IESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-P------ 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-c------
Confidence 345567899999999876 77654 314479999998875433455444 358999999877322211 2
Q ss_pred CCcccEEEeccCCc---ccceeccCcccccccceeeccCc-Cc-CCCccccccCcCccEEEccCCc
Q 039403 163 FPELKVLHLKSMYW---LDEWTMGAGALPKLESLIVNPCA-YL-RKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~-~~-~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.|+.|.+.. +. +..+|. +|+.|.+.++. .. ..++.. -.++|++|++++|.
T Consensus 112 -~sLe~L~L~~-n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~ 167 (426)
T PRK15386 112 -ESVRSLEIKG-SATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS 167 (426)
T ss_pred -cccceEEeCC-CCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCC
Confidence 3466677664 33 334443 35566654322 11 011110 11456666666664
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00012 Score=57.64 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=67.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc--Ccccccccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG--AGALPKLES 192 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~ 192 (249)
+.+.|++.+|.++ +.....+++.|+.|.++-|.++. ... +..|.+|++|.+.. |.|.++... +.++|+|+.
T Consensus 20 ~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIss---L~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISS---LAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCcc--HHHHHHhcccceeEEeecccccc---chh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence 4556666777664 35556677777777777777654 334 56777888887777 555544332 346788888
Q ss_pred eeeccCcCcCCCc-----cccccCcCccEEEccCCc-HHHHHhhcc
Q 039403 193 LIVNPCAYLRKLP-----EELWCIKSLRKLDLHWPQ-TELRQRLRT 232 (249)
Q Consensus 193 L~l~~~~~~~~l~-----~~l~~l~~L~~l~l~~~~-~~~~~~~~~ 232 (249)
|.|..|+-.+.-+ ..+.-+|+|+.||=-.-. ++..+.++.
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 8888877544322 235567777777533322 344444433
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.00062 Score=58.95 Aligned_cols=90 Identities=19% Similarity=0.105 Sum_probs=55.4
Q ss_pred cchhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC---CCcchhc-CCCcccCeEEEecCcccccc
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS---SCTPDIL-GRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 79 (249)
+-+....+++|+.| +..+...... .......+.+|+.|++..+. ......+ ..+++|+.|.+.+|......
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 44567888999999 7652011111 11223346888888866655 2222222 34889999997777522224
Q ss_pred chhhhhcCCCCCcEEEEec
Q 039403 80 GVSKSLCELHKLECLKLVN 98 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~ 98 (249)
.+......+++|++|++++
T Consensus 286 gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSG 304 (482)
T ss_pred HHHHHHHhcCcccEEeeec
Confidence 4555667788999999988
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.0082 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=9.7
Q ss_pred ccceeeccCcCcCCCcccc
Q 039403 190 LESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 190 L~~L~l~~~~~~~~l~~~l 208 (249)
|++|++++|.++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 555666666544 455443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.02 E-value=0.072 Score=37.17 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=13.1
Q ss_pred CCCCCcccEEEeccCCcccceecc-Ccccccccceeecc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNP 197 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 197 (249)
+..+++++.+.+.. + +..+... +..+ .++.+.+..
T Consensus 77 F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 44455666666543 2 3333332 2233 555555543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.0019 Score=48.45 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=48.5
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc-eeccCcccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE-WTMGAGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 193 (249)
.++.+|.+.+.+..+....+..++.++.|.+..|...+++.....-+..++|+.|++++|..|++ -...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46667777776665666666777777777776665544331222012356677777777666662 22334455666666
Q ss_pred eeccCc
Q 039403 194 IVNPCA 199 (249)
Q Consensus 194 ~l~~~~ 199 (249)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.74 E-value=0.18 Score=35.15 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=34.0
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
|.++.+|+.+.+... ...--...|..+++|+.+.+.. . +..+.- .+.. +++++.+.+.. .........+..+
T Consensus 8 F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~-~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSN-CKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECCC---eeEeChhhcccccccccccccc-c-ccccceeeeec-ccccccccccc-ccccccccccccc
Confidence 445566666666532 2222223455666666666654 2 333332 4445 55666666643 2211122344556
Q ss_pred CCCceEEeec
Q 039403 138 PRLQVLKLKR 147 (249)
Q Consensus 138 ~~L~~L~l~~ 147 (249)
++++.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 6666666643
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.0036 Score=47.08 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCc-CcCCCccccccCcCccE
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCA-YLRKLPEELWCIKSLRK 216 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~ 216 (249)
++.++-++..+..+. ..- +..++.++.|.+.+|..+.++- ..-+-.++|+.|++++|+ ++..=-..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eG-le~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHH-HHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 556666665555444 334 6788999999999998887332 222256899999999998 55433356778899999
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9888764
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.0033 Score=49.74 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=62.4
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcc--ccccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPE--ELWCIKSL 214 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~l~~l~~L 214 (249)
+.+.++|+..|+.+++ ... +..++.|+.|.++- |.|+.+.. +..|.+|+.|.|..|.+. ++.+ -+.++++|
T Consensus 18 l~~vkKLNcwg~~L~D---Isi-c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISI-CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH---HHH-HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 3467889998888865 334 66789999999998 77776543 568999999999999864 3433 46788999
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+.|.+..||
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 999999886
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.48 E-value=0.46 Score=20.45 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.5
Q ss_pred cccceeeccCc
Q 039403 189 KLESLIVNPCA 199 (249)
Q Consensus 189 ~L~~L~l~~~~ 199 (249)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34455555554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.00 E-value=0.37 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=11.8
Q ss_pred CcccCeEEEecCccccccchhhhh
Q 039403 62 LPSVQTLRISGNLSCYHSGVSKSL 85 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l 85 (249)
+++|+.|++++|. +.......+
T Consensus 1 ~~~L~~L~l~~n~--i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ--ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB--EHHHHHHHH
T ss_pred CCCCCEEEccCCc--CCHHHHHHh
Confidence 4678888888886 544444333
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.60 E-value=0.0036 Score=54.14 Aligned_cols=175 Identities=26% Similarity=0.215 Sum_probs=88.0
Q ss_pred ccccccccCC------CCcchhcCCCcccCeEEEecCccccccchh----hhhcCC-CCCcEEEEecCCCceeeee----
Q 039403 43 LIFISALHPS------SCTPDILGRLPSVQTLRISGNLSCYHSGVS----KSLCEL-HKLECLKLVNESKLSRMVL---- 107 (249)
Q Consensus 43 L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~L~~l~l---- 107 (249)
+..|.+..+. ..+...+...+.|+.|++++|. ...... ..+... ..+++|++..+. +.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHH
Confidence 5555544444 2234445566777777777775 332211 122222 234444444422 111111
Q ss_pred -cCCCCCCCccEEEEEcccCCC----CCccccc----CCCCCceEEeeccccCCce---eeeeCCCCCCc-ccEEEeccC
Q 039403 108 -SEYQFPPSLIQLSLSNTELME----DPMPMLE----RLPRLQVLKLKRNSYLGRK---LACAGSGGFPE-LKVLHLKSM 174 (249)
Q Consensus 108 -~~~~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~-L~~L~l~~~ 174 (249)
.+.. ...++.++++.|.+.. ..+..+. ...++++|++.+|.++... +... +...+. +..+++..
T Consensus 166 ~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~-l~~~~~~~~el~l~~- 242 (478)
T KOG4308|consen 166 AVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV-LASGESLLRELDLAS- 242 (478)
T ss_pred HHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH-HhccchhhHHHHHHh-
Confidence 3333 4566667777776531 1112222 3556777777766654321 0112 223333 55566666
Q ss_pred Cccc-----ceeccCccc-ccccceeeccCcCcC----CCccccccCcCccEEEccCCc
Q 039403 175 YWLD-----EWTMGAGAL-PKLESLIVNPCAYLR----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 175 ~~~~-----~~~~~~~~~-~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+. .+...+..+ +.+++++++.|.+.. ++++.+..++.++.+.++.|+
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 4444 122233333 567888888888755 345556677788888888885
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.40 E-value=1 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=6.4
Q ss_pred ccccceeeccCc
Q 039403 188 PKLESLIVNPCA 199 (249)
Q Consensus 188 ~~L~~L~l~~~~ 199 (249)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.50 E-value=2.7 Score=19.99 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=7.2
Q ss_pred ccccceeeccCcC
Q 039403 188 PKLESLIVNPCAY 200 (249)
Q Consensus 188 ~~L~~L~l~~~~~ 200 (249)
++|++|++++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455666666653
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.50 E-value=2.7 Score=19.99 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=7.2
Q ss_pred ccccceeeccCcC
Q 039403 188 PKLESLIVNPCAY 200 (249)
Q Consensus 188 ~~L~~L~l~~~~~ 200 (249)
++|++|++++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3455666666653
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.93 E-value=7 Score=19.13 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=8.7
Q ss_pred ccccceeeccCcCc
Q 039403 188 PKLESLIVNPCAYL 201 (249)
Q Consensus 188 ~~L~~L~l~~~~~~ 201 (249)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777776653
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.92 E-value=9.6 Score=18.47 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=9.6
Q ss_pred ccccceeeccCcCc
Q 039403 188 PKLESLIVNPCAYL 201 (249)
Q Consensus 188 ~~L~~L~l~~~~~~ 201 (249)
.+|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45777777777753
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=48.49 E-value=11 Score=18.31 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=5.0
Q ss_pred ccceeeccCc
Q 039403 190 LESLIVNPCA 199 (249)
Q Consensus 190 L~~L~l~~~~ 199 (249)
|+.|++++|.
T Consensus 4 L~~L~vs~N~ 13 (26)
T smart00364 4 LKELNVSNNQ 13 (26)
T ss_pred cceeecCCCc
Confidence 4445555555
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.93 E-value=0.19 Score=39.10 Aligned_cols=22 Identities=5% Similarity=-0.091 Sum_probs=9.9
Q ss_pred cceeccCcccccccceeeccCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~ 199 (249)
+..|...+..++++.++..+++
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhCCccccccCCcchhhhccCc
Confidence 3344444444444444444444
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.76 E-value=6 Score=34.84 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=6.6
Q ss_pred CCCCceEEeecc
Q 039403 137 LPRLQVLKLKRN 148 (249)
Q Consensus 137 l~~L~~L~l~~~ 148 (249)
.++|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555555
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=40.11 E-value=1.9 Score=33.70 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=39.6
Q ss_pred hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCC
Q 039403 12 DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELH 89 (249)
Q Consensus 12 ~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 89 (249)
.|...+..+.| ++.+ ... .+-.-++-++.+..|++..+. ...|..++....++.++++.| .....|.++...+
T Consensus 37 ei~~~kr~tvld~~s~-r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n---~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN---NHSQQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhh-HHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc---chhhCCccccccC
Confidence 46666666666 5555 322 122223334445555533222 445555555555555555444 2233455555555
Q ss_pred CCcEEEEec
Q 039403 90 KLECLKLVN 98 (249)
Q Consensus 90 ~L~~L~l~~ 98 (249)
+++.++.-+
T Consensus 112 ~~k~~e~k~ 120 (326)
T KOG0473|consen 112 HPKKNEQKK 120 (326)
T ss_pred Ccchhhhcc
Confidence 555555544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.19 E-value=24 Score=31.32 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.6
Q ss_pred cccceeeccCcCcC
Q 039403 189 KLESLIVNPCAYLR 202 (249)
Q Consensus 189 ~L~~L~l~~~~~~~ 202 (249)
.|++|-+.+|++..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35555566655544
Done!