Query 039403
Match_columns 249
No_of_seqs 139 out of 2294
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 7.2E-28 2.5E-32 197.1 15.5 214 1-223 88-312 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-26 8.3E-31 186.9 10.9 213 2-223 58-279 (313)
3 3rgz_A Protein brassinosteroid 99.9 1.6E-24 5.4E-29 195.8 14.9 83 137-222 631-714 (768)
4 3rgz_A Protein brassinosteroid 99.9 2.2E-24 7.4E-29 194.9 13.8 215 2-223 402-691 (768)
5 4fcg_A Uncharacterized protein 99.9 1.2E-23 4.2E-28 172.0 15.5 198 16-223 80-288 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-24 5.8E-29 176.0 8.7 209 4-223 87-302 (313)
7 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-23 1.2E-27 166.0 14.1 212 2-223 19-236 (285)
8 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.3E-28 170.2 8.8 214 2-223 36-259 (306)
9 2id5_A Lingo-1, leucine rich r 99.9 2.4E-22 8.2E-27 172.3 17.0 215 1-222 39-282 (477)
10 1xku_A Decorin; proteoglycan, 99.9 2.6E-22 8.7E-27 164.2 15.6 208 1-222 59-273 (330)
11 3zyi_A Leucine-rich repeat-con 99.9 2.3E-22 7.7E-27 171.4 15.3 214 1-223 82-301 (452)
12 2z80_A TOLL-like receptor 2, v 99.9 5.5E-23 1.9E-27 169.7 10.6 213 2-223 60-312 (353)
13 3o6n_A APL1; leucine-rich repe 99.9 5.3E-22 1.8E-26 165.9 16.2 210 2-223 77-350 (390)
14 4eco_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 185.4 7.3 212 3-223 192-444 (636)
15 2z66_A Variable lymphocyte rec 99.9 1.3E-22 4.4E-27 164.2 11.5 211 2-223 15-234 (306)
16 3zyj_A Leucine-rich repeat-con 99.9 4.3E-22 1.5E-26 169.1 14.7 214 1-223 71-290 (440)
17 3oja_B Anopheles plasmodium-re 99.9 5E-22 1.7E-26 174.8 15.4 97 1-100 82-182 (597)
18 3v47_A TOLL-like receptor 5B a 99.9 1.6E-22 5.4E-27 172.3 11.5 108 113-223 298-406 (455)
19 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.6E-26 167.6 15.6 215 1-223 63-307 (477)
20 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 175.0 12.9 107 113-222 424-533 (606)
21 1wwl_A Monocyte differentiatio 99.9 2.2E-22 7.5E-27 163.4 9.7 211 2-223 71-307 (312)
22 3v47_A TOLL-like receptor 5B a 99.9 7.9E-22 2.7E-26 167.9 12.5 89 132-223 293-382 (455)
23 2z62_A TOLL-like receptor 4, v 99.9 5.4E-22 1.9E-26 158.3 10.7 211 3-223 16-235 (276)
24 3zyi_A Leucine-rich repeat-con 99.9 2.1E-21 7E-26 165.4 14.1 210 2-223 62-277 (452)
25 2z80_A TOLL-like receptor 2, v 99.9 4.2E-22 1.4E-26 164.5 9.5 212 2-223 39-288 (353)
26 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6.2E-26 159.3 12.5 213 2-223 62-305 (332)
27 3t6q_A CD180 antigen; protein- 99.9 3.2E-21 1.1E-25 169.8 14.7 214 1-222 285-510 (606)
28 3zyj_A Leucine-rich repeat-con 99.9 3.7E-21 1.3E-25 163.3 14.3 210 2-223 51-266 (440)
29 1xku_A Decorin; proteoglycan, 99.9 6E-21 2.1E-25 156.1 14.5 210 1-223 83-304 (330)
30 4ecn_A Leucine-rich repeat pro 99.9 7.9E-22 2.7E-26 178.8 9.4 210 4-223 435-684 (876)
31 4eco_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 169.9 13.9 209 1-223 360-598 (636)
32 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-21 1.1E-25 154.6 11.4 195 1-203 39-240 (285)
33 3o6n_A APL1; leucine-rich repe 99.9 6.7E-21 2.3E-25 159.3 13.8 212 2-223 53-329 (390)
34 4ecn_A Leucine-rich repeat pro 99.8 1.8E-21 6E-26 176.6 10.3 202 9-223 481-708 (876)
35 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-21 5.3E-26 171.8 9.1 209 3-222 294-531 (606)
36 3oja_B Anopheles plasmodium-re 99.8 8.5E-21 2.9E-25 166.9 13.5 213 2-223 59-335 (597)
37 4fmz_A Internalin; leucine ric 99.8 2.2E-20 7.6E-25 153.6 14.9 205 1-223 95-322 (347)
38 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-20 5.2E-25 162.6 14.2 95 1-100 28-126 (520)
39 2ft3_A Biglycan; proteoglycan, 99.8 7.6E-21 2.6E-25 155.6 11.3 208 2-223 41-275 (332)
40 3vq2_A TLR4, TOLL-like recepto 99.8 8.4E-21 2.9E-25 167.1 12.4 206 4-223 272-508 (606)
41 2o6q_A Variable lymphocyte rec 99.8 4.3E-20 1.5E-24 146.9 14.9 176 41-223 37-216 (270)
42 2z63_A TOLL-like receptor 4, v 99.8 7.3E-21 2.5E-25 166.2 10.6 211 3-223 291-529 (570)
43 3o53_A Protein LRIM1, AGAP0063 99.8 5.1E-21 1.7E-25 155.7 8.6 207 4-223 20-248 (317)
44 3oja_A Leucine-rich immune mol 99.8 6.2E-21 2.1E-25 163.9 8.8 204 7-223 20-248 (487)
45 2o6q_A Variable lymphocyte rec 99.8 1.8E-19 6.1E-24 143.3 16.1 193 1-203 23-220 (270)
46 1p9a_G Platelet glycoprotein I 99.8 7.1E-20 2.4E-24 147.1 13.4 197 13-223 6-206 (290)
47 3rfs_A Internalin B, repeat mo 99.8 4.7E-20 1.6E-24 146.9 12.1 179 13-202 37-219 (272)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.9E-20 2.7E-24 159.7 14.1 94 1-99 59-156 (562)
49 3j0a_A TOLL-like receptor 5; m 99.8 5.2E-20 1.8E-24 167.9 13.2 91 6-99 61-158 (844)
50 4fmz_A Internalin; leucine ric 99.8 1.6E-19 5.4E-24 148.5 14.1 204 1-223 117-344 (347)
51 1p9a_G Platelet glycoprotein I 99.8 5.7E-20 2E-24 147.7 11.2 190 1-202 17-209 (290)
52 1h6u_A Internalin H; cell adhe 99.8 1.9E-19 6.3E-24 145.9 14.3 198 4-223 29-228 (308)
53 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-20 2.3E-24 163.4 12.5 146 1-151 32-184 (680)
54 2z7x_B TOLL-like receptor 1, v 99.8 8E-20 2.7E-24 158.1 12.5 117 1-127 7-128 (520)
55 1wwl_A Monocyte differentiatio 99.8 4.6E-21 1.6E-25 155.6 4.3 207 3-223 52-285 (312)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-19 7.2E-24 157.0 14.0 139 1-150 38-181 (562)
57 1ziw_A TOLL-like receptor 3; i 99.8 9.5E-20 3.2E-24 162.5 12.0 206 12-223 400-620 (680)
58 2z81_A CD282 antigen, TOLL-lik 99.8 1E-19 3.6E-24 158.3 11.8 212 2-223 13-234 (549)
59 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-19 7.2E-24 163.9 14.2 95 3-100 33-134 (844)
60 3bz5_A Internalin-J, INLJ; leu 99.8 8.8E-19 3E-23 149.3 17.0 174 1-201 49-246 (457)
61 2z81_A CD282 antigen, TOLL-lik 99.8 5.2E-20 1.8E-24 160.2 9.4 148 1-152 33-210 (549)
62 1o6v_A Internalin A; bacterial 99.8 6.6E-19 2.3E-23 150.5 16.1 58 162-223 263-320 (466)
63 2xwt_C Thyrotropin receptor; s 99.8 3.7E-19 1.3E-23 138.9 13.1 203 6-223 23-237 (239)
64 2z63_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 158.9 11.0 208 6-223 271-505 (570)
65 2z62_A TOLL-like receptor 4, v 99.8 8.4E-20 2.9E-24 145.6 9.4 195 1-204 35-240 (276)
66 4glp_A Monocyte differentiatio 99.8 1.6E-19 5.4E-24 146.5 11.1 196 15-223 89-305 (310)
67 3o53_A Protein LRIM1, AGAP0063 99.8 8E-20 2.7E-24 148.6 8.6 179 35-223 28-225 (317)
68 1o6v_A Internalin A; bacterial 99.8 9.9E-19 3.4E-23 149.4 15.2 200 2-223 185-386 (466)
69 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.3E-24 155.2 9.9 175 38-223 31-225 (487)
70 2ast_B S-phase kinase-associat 99.8 2.3E-20 7.7E-25 152.9 4.0 213 3-223 56-283 (336)
71 3rfs_A Internalin B, repeat mo 99.8 1.2E-18 4E-23 138.7 13.3 176 38-222 38-215 (272)
72 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5.1E-23 140.6 13.1 182 1-202 48-231 (308)
73 3m19_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 134.5 13.0 174 18-202 15-193 (251)
74 3bz5_A Internalin-J, INLJ; leu 99.8 7.4E-18 2.5E-22 143.6 15.5 194 1-223 71-297 (457)
75 4g8a_A TOLL-like receptor 4; l 99.8 5.4E-18 1.8E-22 149.5 14.9 62 160-222 514-577 (635)
76 2ca6_A RAN GTPase-activating p 99.8 3.3E-20 1.1E-24 154.9 -0.5 214 3-223 18-285 (386)
77 1jl5_A Outer protein YOPM; leu 99.8 2.2E-18 7.4E-23 146.7 9.9 70 1-74 18-102 (454)
78 2ca6_A RAN GTPase-activating p 99.7 3.7E-20 1.3E-24 154.5 -1.8 217 1-223 39-314 (386)
79 2ast_B S-phase kinase-associat 99.7 4.3E-20 1.5E-24 151.2 -1.5 213 1-223 77-304 (336)
80 3m19_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 130.9 12.5 167 2-178 22-192 (251)
81 2xwt_C Thyrotropin receptor; s 99.7 2.6E-17 9E-22 128.4 13.9 182 30-223 23-216 (239)
82 4glp_A Monocyte differentiatio 99.7 3.6E-18 1.2E-22 138.4 5.9 189 2-202 99-308 (310)
83 4ezg_A Putative uncharacterize 99.7 4.3E-17 1.5E-21 123.5 11.2 152 60-223 41-192 (197)
84 1h6t_A Internalin B; cell adhe 99.7 3.9E-17 1.3E-21 131.2 11.6 179 4-202 34-214 (291)
85 1jl5_A Outer protein YOPM; leu 99.7 8.9E-17 3E-21 136.8 13.2 202 1-223 138-407 (454)
86 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-16 5.2E-21 139.8 14.6 197 1-223 47-295 (622)
87 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.9E-21 128.5 11.0 169 37-223 42-211 (291)
88 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.2E-21 140.1 11.5 180 3-202 30-211 (605)
89 2o6s_A Variable lymphocyte rec 99.7 1.7E-16 5.8E-21 121.2 10.5 160 41-213 28-190 (208)
90 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.8E-21 131.8 10.1 207 3-222 18-256 (350)
91 3goz_A Leucine-rich repeat-con 99.7 5.1E-18 1.7E-22 140.5 0.7 146 2-151 6-180 (362)
92 1m9s_A Internalin B; cell inva 99.7 3.9E-16 1.3E-20 137.0 12.4 169 37-223 39-208 (605)
93 2o6s_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 118.8 10.7 171 2-189 15-190 (208)
94 3goz_A Leucine-rich repeat-con 99.7 2.6E-18 8.9E-23 142.2 -2.1 216 1-223 29-295 (362)
95 3cvr_A Invasion plasmid antige 99.7 1.3E-15 4.5E-20 132.5 14.1 173 18-223 60-241 (571)
96 3cvr_A Invasion plasmid antige 99.7 2.4E-16 8.3E-21 137.1 9.4 180 1-212 66-254 (571)
97 4ezg_A Putative uncharacterize 99.7 3.9E-16 1.3E-20 118.2 9.1 152 37-201 40-194 (197)
98 3g06_A SSPH2 (leucine-rich rep 99.6 1.5E-15 5E-20 133.6 13.9 183 16-223 39-272 (622)
99 4ay9_X Follicle-stimulating ho 99.6 9.3E-16 3.2E-20 126.3 10.8 191 23-223 16-213 (350)
100 4g8a_A TOLL-like receptor 4; l 99.6 2.4E-16 8.1E-21 139.0 7.6 131 42-178 53-186 (635)
101 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-18 4.9E-23 147.9 -6.9 208 9-223 162-409 (461)
102 1xeu_A Internalin C; cellular 99.6 4.1E-16 1.4E-20 123.4 7.5 168 15-202 17-186 (263)
103 1z7x_W Ribonuclease inhibitor; 99.6 3E-18 1E-22 146.0 -5.5 37 187-223 255-295 (461)
104 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 116.4 10.6 141 3-150 28-171 (229)
105 2v9t_B SLIT homolog 2 protein 99.6 1.9E-15 6.4E-20 116.5 9.2 127 41-173 32-161 (220)
106 2xot_A Amphoterin-induced prot 99.6 1.8E-15 6.1E-20 125.1 8.9 162 53-223 31-200 (361)
107 3e6j_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 114.4 11.2 150 43-202 21-173 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 6.6E-15 2.3E-19 113.4 10.8 151 44-203 14-168 (220)
109 1xeu_A Internalin C; cellular 99.6 3.6E-15 1.2E-19 117.9 9.1 160 2-181 27-188 (263)
110 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 112.2 10.7 141 53-202 24-166 (220)
111 3ogk_B Coronatine-insensitive 99.6 3.9E-16 1.3E-20 136.9 2.2 60 163-223 462-524 (592)
112 1dce_A Protein (RAB geranylger 99.6 4E-17 1.4E-21 142.3 -4.4 121 90-219 442-567 (567)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 7.7E-15 2.6E-19 113.0 8.9 109 59-173 53-162 (220)
114 2ell_A Acidic leucine-rich nuc 99.6 1.4E-14 4.9E-19 106.7 8.7 133 61-200 22-159 (168)
115 3ogk_B Coronatine-insensitive 99.5 5.9E-16 2E-20 135.8 -0.1 108 113-222 435-548 (592)
116 1dce_A Protein (RAB geranylger 99.5 7E-17 2.4E-21 140.8 -6.2 179 38-223 346-544 (567)
117 2xot_A Amphoterin-induced prot 99.5 1.5E-14 5.2E-19 119.5 7.6 143 2-151 26-176 (361)
118 2ell_A Acidic leucine-rich nuc 99.5 4.8E-14 1.6E-18 103.8 7.6 131 86-223 21-158 (168)
119 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.3E-19 103.3 3.8 103 113-220 41-148 (149)
120 2je0_A Acidic leucine-rich nuc 99.4 5.4E-14 1.8E-18 101.4 4.5 129 61-196 15-148 (149)
121 4b8c_D Glucose-repressible alc 99.4 1.1E-14 3.8E-19 130.5 -0.9 113 34-152 217-330 (727)
122 1w8a_A SLIT protein; signaling 99.4 1.3E-12 4.4E-17 98.3 8.9 128 66-203 11-141 (192)
123 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 1E-17 100.4 5.1 130 87-224 17-152 (176)
124 1w8a_A SLIT protein; signaling 99.4 1.6E-12 5.6E-17 97.8 8.6 126 44-178 11-139 (192)
125 2p1m_B Transport inhibitor res 99.4 9.7E-15 3.3E-19 128.0 -4.6 178 39-223 287-517 (594)
126 4b8c_D Glucose-repressible alc 99.4 4.8E-14 1.6E-18 126.4 -0.4 144 4-154 211-357 (727)
127 2p1m_B Transport inhibitor res 99.3 3.3E-14 1.1E-18 124.7 -3.1 210 7-223 279-542 (594)
128 1ds9_A Outer arm dynein; leuci 99.3 4.2E-15 1.4E-19 112.6 -8.0 129 81-218 40-180 (198)
129 1a9n_A U2A', U2A'; complex (nu 99.3 7.9E-13 2.7E-17 98.1 4.5 133 59-200 15-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.3 9.5E-12 3.2E-16 93.7 9.9 107 89-200 31-138 (193)
131 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 91.5 10.2 104 115-222 29-134 (177)
132 2wfh_A SLIT homolog 2 protein 99.3 9E-12 3.1E-16 93.8 8.4 122 44-174 13-136 (193)
133 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.3E-16 91.0 8.7 108 41-152 28-138 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 1.1E-13 3.8E-18 104.7 -4.6 156 6-170 7-180 (198)
135 3sb4_A Hypothetical leucine ri 99.1 1.3E-10 4.5E-15 94.6 8.3 101 113-218 225-327 (329)
136 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.1E-15 83.9 8.2 105 91-202 11-116 (170)
137 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 83.7 8.5 103 92-201 15-118 (174)
138 2r9u_A Variable lymphocyte rec 99.0 5.1E-10 1.8E-14 82.7 7.3 90 32-127 26-118 (174)
139 3g39_A Variable lymphocyte rec 99.0 6.5E-10 2.2E-14 81.8 7.2 101 20-128 12-116 (170)
140 3un9_A NLR family member X1; l 99.0 6.3E-12 2.2E-16 104.1 -4.3 156 62-223 71-250 (372)
141 4fdw_A Leucine rich hypothetic 98.9 3.3E-08 1.1E-12 82.6 14.1 126 89-223 248-381 (401)
142 3sb4_A Hypothetical leucine ri 98.9 1.2E-08 4.1E-13 83.0 10.3 102 87-195 224-328 (329)
143 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.3E-14 87.8 5.8 159 60-223 136-318 (362)
144 4fdw_A Leucine rich hypothetic 98.8 1.2E-07 4E-12 79.2 14.2 129 84-223 221-356 (401)
145 2ra8_A Uncharacterized protein 98.7 2.6E-09 8.9E-14 87.9 2.5 157 56-223 165-341 (362)
146 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 80.5 8.0 99 119-223 13-114 (347)
147 2ifg_A High affinity nerve gro 98.7 1.4E-08 4.7E-13 83.2 5.4 91 5-100 20-114 (347)
148 3un9_A NLR family member X1; l 98.7 8.6E-11 2.9E-15 97.3 -7.9 157 40-202 71-253 (372)
149 3e4g_A ATP synthase subunit S, 98.5 5.7E-08 2E-12 71.1 2.6 83 115-199 62-150 (176)
150 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 69.5 2.7 84 138-223 61-150 (176)
151 1io0_A Tropomodulin; LRR prote 98.2 1.5E-07 5E-12 70.1 -0.1 109 113-223 35-162 (185)
152 1io0_A Tropomodulin; LRR prote 98.0 6.2E-07 2.1E-11 66.7 -1.3 117 56-178 29-164 (185)
153 4fs7_A Uncharacterized protein 97.9 0.00025 8.6E-09 58.8 14.3 196 12-223 157-377 (394)
154 4gt6_A Cell surface protein; l 97.9 0.00044 1.5E-08 57.3 15.6 110 108-226 260-371 (394)
155 4fs7_A Uncharacterized protein 97.8 0.00017 5.9E-09 59.8 11.0 144 59-217 249-393 (394)
156 3rw6_A Nuclear RNA export fact 97.8 9.2E-06 3.2E-10 63.7 2.4 80 136-218 168-257 (267)
157 3rw6_A Nuclear RNA export fact 97.6 2.1E-05 7.3E-10 61.6 2.2 59 14-74 167-231 (267)
158 4gt6_A Cell surface protein; l 97.5 0.0019 6.6E-08 53.4 13.1 82 134-222 261-344 (394)
159 4h09_A Hypothetical leucine ri 97.1 0.015 5E-07 47.7 13.8 59 160-221 282-342 (379)
160 4h09_A Hypothetical leucine ri 96.6 0.011 3.6E-07 48.5 9.3 129 58-197 212-342 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00037 1.3E-08 51.9 -0.4 89 134-224 66-169 (197)
162 3rfe_A Platelet glycoprotein I 95.0 0.041 1.4E-06 37.9 5.2 35 165-200 32-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.0 0.0061 2.1E-07 45.3 0.9 87 134-222 37-136 (197)
164 3rfe_A Platelet glycoprotein I 91.4 0.14 4.9E-06 35.1 3.1 35 115-149 32-66 (130)
165 2lz0_A Uncharacterized protein 49.5 14 0.00047 23.7 2.9 13 60-72 17-29 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.2e-28 Score=197.10 Aligned_cols=214 Identities=21% Similarity=0.226 Sum_probs=191.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|+++.++++|+.+..+++|++| +++| .+. .+|..++.+++|++|++.++. ..+|..++++++|+.|++++|. ..
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~ 163 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP--EL 163 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TC
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--Cc
Confidence 3578899999999999999999 9888 877 899999999999999976666 7889999999999999999987 66
Q ss_pred cchhhhhcC---------CCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccc
Q 039403 79 SGVSKSLCE---------LHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 79 ~~~~~~l~~---------l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (249)
+.+|..+.. +++|+.|+++++. +..++..+.. +++|+.|++++|.++ ..+..+..+++|++|++++|.
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 777766654 9999999999987 8877667888 999999999999998 577789999999999999998
Q ss_pred cCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+.. +.. ++.+++|++|++++|+..+.+|..+..+++|+.|++++|.+.+.+|+.++.+++++.+++..+.
T Consensus 241 ~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 241 ALRNY-PPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCBC-CCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred chhhh-HHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88766 667 8899999999999987777999999999999999999999999999999999999999998764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.4e-26 Score=186.88 Aligned_cols=213 Identities=20% Similarity=0.220 Sum_probs=183.4
Q ss_pred CCCCcc---ccchhhhhcccccee-eec-CcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCc
Q 039403 2 PSSYID---QSPEDIWMMQKLMHL-NFG-CITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNL 74 (249)
Q Consensus 2 ~~~~l~---~lp~~i~~l~~L~~L-l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 74 (249)
+++.++ .+|+.+..+++|++| +++ | .+.+.+|..++.+++|++|++.++. +.+|..+.++++|++|++++|.
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 456676 699999999999999 885 6 8888999999999999999977766 4788889999999999999997
Q ss_pred cccccchhhhhcCCCCCcEEEEecCCCce-eeeecCCCCCC-CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 75 SCYHSGVSKSLCELHKLECLKLVNESKLS-RMVLSEYQFPP-SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~L~-~l~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
..+.+|..+..+++|++|+++++. +. .++..+.. ++ .|+.|++++|.+++..+..+..++ |+.|++++|.+.+
T Consensus 137 --l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 137 --LSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp --EESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred --cCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 766788899999999999999987 76 44446777 76 899999999998877788888887 9999999998876
Q ss_pred ceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 153 RKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +.. +..+++|+.|++++ +.++..+..+..+++|++|++++|.+.+.+|..+..+++|+++++++|.
T Consensus 212 ~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 212 DA-SVL-FGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CC-GGG-CCTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cC-CHH-HhcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 54 666 78899999999999 6677555557788999999999999988889999999999999999995
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.6e-24 Score=195.76 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
+++|+.|++++|.+.+.. |.. ++.+++|+.|++++ |.++ .+|..++.+++|+.|++++|.+++.+|..+..++.|+
T Consensus 631 l~~L~~LdLs~N~l~g~i-p~~-l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI-PKE-IGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCC-CGG-GGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cccccEEECcCCcccccC-CHH-HhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 455667777777776655 556 67777788888887 4554 7777788888888888888888777888888888888
Q ss_pred EEEccCC
Q 039403 216 KLDLHWP 222 (249)
Q Consensus 216 ~l~l~~~ 222 (249)
++++++|
T Consensus 708 ~L~ls~N 714 (768)
T 3rgz_A 708 EIDLSNN 714 (768)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 8888877
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.2e-24 Score=194.87 Aligned_cols=215 Identities=19% Similarity=0.139 Sum_probs=182.5
Q ss_pred CCCCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++ .+|..+..+++|++| +++| .+.+.+|..++.+++|++|++.++. +.+|..+..+++|+.|++++|. .
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l 478 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--L 478 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C
T ss_pred CCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc--c
Confidence 455665 788899999999999 8888 8888899999999999999966666 5788889999999999999997 7
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCce-eeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLS-RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
.+.+|..+..+++|+.|+++++. +. .++.++.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 77788889999999999999977 66 33447788 89999999999999888888999999999999998877644311
Q ss_pred ---------------------------------------------------------------------eeCCCCCCccc
Q 039403 157 ---------------------------------------------------------------------CAGSGGFPELK 167 (249)
Q Consensus 157 ---------------------------------------------------------------------~~~~~~~~~L~ 167 (249)
.. ++.+++|+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~ 635 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMM 635 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCC
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhcccccc
Confidence 12 33457899
Q ss_pred EEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 168 VLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 168 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.|++++ |.++ .+|..++.++.|+.|++++|.+++.+|..++.++.|+.||+++|.
T Consensus 636 ~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcC-CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 999999 5555 899999999999999999999999999999999999999999995
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.2e-23 Score=171.97 Aligned_cols=198 Identities=22% Similarity=0.263 Sum_probs=172.8
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
.++++.| +.++ .+. .+|..++.+++|++|++.++. ..+|..++++++|++|++++|. .. .+|..+.++++|+.
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--LR-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC--CC-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc--cc-cCcHHHhcCcCCCE
Confidence 4889999 8888 776 889999999999999976666 7888889999999999999996 54 78889999999999
Q ss_pred EEEecCCCceeeee---------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCC
Q 039403 94 LKLVNESKLSRMVL---------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFP 164 (249)
Q Consensus 94 L~l~~~~~L~~l~l---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 164 (249)
|+++++..+..++. .+.. +++|+.|++++|.++ ..|..++.+++|++|++++|.+.+ .+.. ++.++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~-l~~l~ 229 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQG-LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPA-IHHLP 229 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEE-STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGG-GGGCT
T ss_pred EECCCCCCccccChhHhhccchhhhcc-CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--Cchh-hccCC
Confidence 99998442343332 2446 889999999999998 788889999999999999999875 2556 78899
Q ss_pred cccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 165 ELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|++|++++|+..+.+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 99999999977777899999999999999999999999999999999999999999986
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.7e-24 Score=176.01 Aligned_cols=209 Identities=16% Similarity=0.160 Sum_probs=182.0
Q ss_pred CCcc-ccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCcccccc
Q 039403 4 SYID-QSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 4 ~~l~-~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+.+. .+|..++.+++|++| +++| .+.+.+|..++.+++|++|++.++. +.+|..+..+++|++|++++|. ..+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~ 163 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISG 163 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEE
T ss_pred CcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccC
Confidence 4444 899999999999999 9988 8888899999999999999966655 5788999999999999999997 776
Q ss_pred chhhhhcCCC-CCcEEEEecCCCceeee-ecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 80 GVSKSLCELH-KLECLKLVNESKLSRMV-LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 80 ~~~~~l~~l~-~L~~L~l~~~~~L~~l~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
.+|..+..++ +|+.|+++++. +.... ..+.. ++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+.. .
T Consensus 164 ~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~ 238 (313)
T 1ogq_A 164 AIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFAN-LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--G 238 (313)
T ss_dssp ECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGG-CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--G
T ss_pred cCCHHHhhhhhcCcEEECcCCe-eeccCChHHhC-Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--C
Confidence 8888999998 99999999977 66333 36666 66 999999999998788889999999999999999987643 3
Q ss_pred eCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. +..+++|++|++++ +.++ .+|..+..+++|+.|++++|.+++.+|.. +.++.|+.+++++|+
T Consensus 239 ~-~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-ccccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4 66789999999999 5666 88888999999999999999999888875 889999999999996
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=3.4e-23 Score=166.03 Aligned_cols=212 Identities=19% Similarity=0.151 Sum_probs=175.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++..++++|..+ .++|++| +.+| .+....+..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--~l 93 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA--QL 93 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT--TC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC--Cc
Confidence 467899999765 5799999 8888 8876666778999999999966666 444 6788999999999999994 35
Q ss_pred cch-hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 79 SGV-SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
..+ +..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...+..+..+++|+.|++++|.+.+.. +
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 170 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-E 170 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-T
T ss_pred cccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-H
Confidence 554 6778999999999999977 776644 5777 999999999999998655567899999999999999887532 4
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 171 ~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 171 RA-FRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TT-TTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HH-hcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 45 77899999999999 667755 7778899999999999999876545668899999999999985
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.3e-23 Score=170.19 Aligned_cols=214 Identities=15% Similarity=0.065 Sum_probs=132.0
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
+++.++++|.. +..+++|++| +++| .+.. ..+..+..+++|++|++.++. ..++..+..+++|++|++++|.
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-- 112 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-- 112 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE--
T ss_pred CCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc--
Confidence 34455555543 3455555555 4444 3321 112333345555555533333 3444445555566666665553
Q ss_pred cccchh-hhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCc
Q 039403 77 YHSGVS-KSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 77 ~~~~~~-~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 153 (249)
.....+ ..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.+.+ ..+..+..+++|++|++++|.+.+.
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccchhhhhccCCCEEECCCCc-CCccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 222211 345556666666666654 443332 4556 7778888888887764 3566777788888888888877653
Q ss_pred eeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCc-CccEEEccCCc
Q 039403 154 KLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIK-SLRKLDLHWPQ 223 (249)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~l~l~~~~ 223 (249)
. +.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+.+..+..+..++ +|+++++++|+
T Consensus 191 ~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 S-PTA-FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp C-TTT-TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred C-HHH-hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 3 445 67788888888888 56665544 466788899999999888777777777774 89999999885
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=172.25 Aligned_cols=215 Identities=20% Similarity=0.150 Sum_probs=149.7
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|++| +++| .+.+..|..++++++|++|++.++. ..++. .+.++++|++|++++|.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-- 115 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-- 115 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC--
T ss_pred CCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc--
Confidence 4677888885 578889999999 8888 7777778888899999999966655 55655 46788999999999886
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++.+|.+.+..
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~- 192 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR- 192 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-
T ss_pred cccCChhHccccccCCEEECCCCc-cceeChhhccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-
Confidence 666667778889999999998877 666654 5677 888888888888887555566778888888888877765432
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccC------------------------cccccccceeeccCcCcCCCccccccC
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGA------------------------GALPKLESLIVNPCAYLRKLPEELWCI 211 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~l~~~l~~l 211 (249)
+.. +..+++|+.|++++|+.++.++... ..+++|+.|++++|.+.+..+..+..+
T Consensus 193 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 193 DYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp TTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred hhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 334 5666667777766654444444433 344555555555555443333344455
Q ss_pred cCccEEEccCC
Q 039403 212 KSLRKLDLHWP 222 (249)
Q Consensus 212 ~~L~~l~l~~~ 222 (249)
++|++|++++|
T Consensus 272 ~~L~~L~L~~n 282 (477)
T 2id5_A 272 LRLQEIQLVGG 282 (477)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 55555555555
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.6e-22 Score=164.23 Aligned_cols=208 Identities=18% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++.+|. .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|..+. ++|+.|++++|. .
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~--l 133 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE--I 133 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC--C
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc--c
Confidence 45677777776 57788888888 7777 6665567777788888888855554 55555443 567777777665 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee---cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
....+..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.++ ..+..+. ++|+.|++++|.+.+..
T Consensus 134 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 134 TKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp CBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGG-CTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred cccCHhHhcCCccccEEECCCCc-CCccCcChhhccC-CCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccC
Confidence 44445566777777777777654 432111 3444 555666666555554 2332221 45555555555544322
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
+.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+. .+|..+..+++|+++++++|
T Consensus 209 -~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 209 -AAS-LKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp -TGG-GTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred -HHH-hcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 233 44555555555555 34443332 3445555555555555543 44555555555555555555
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.3e-22 Score=171.38 Aligned_cols=214 Identities=17% Similarity=0.124 Sum_probs=161.5
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+ |..+..+++|+.| +++| .+.+..+..+..+++|++|++.++. ..++. .+.++++|++|++++|.
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-- 158 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-- 158 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC--
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC--
Confidence 456677776 3457778888888 7777 6666666677778888888855555 44444 36678888888888875
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+.++++|+.|+++++..+..+.. .+.. +++|+.|++++|.+++ . +.+..+++|+.|++++|.+.+..
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~- 234 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKD-M-PNLTPLVGLEELEMSGNHFPEIR- 234 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSS-C-CCCTTCTTCCEEECTTSCCSEEC-
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccc-c-ccccccccccEEECcCCcCcccC-
Confidence 4443445677788888888877333666554 5677 8899999999998873 3 46788899999999999887644
Q ss_pred eeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|+.|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 235 ~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGS-FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGG-GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccc-ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 566 88899999999999 677755 5567789999999999999875445567889999999999985
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=169.72 Aligned_cols=213 Identities=18% Similarity=0.147 Sum_probs=129.7
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|. .+..+++|++| +.+| .+.+..+..++.+++|++|++.++. ..++.. +.++++|++|++++|. .
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 136 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--Y 136 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC--C
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC--C
Confidence 4555666655 46666666666 6555 5554445556666666666644444 444443 5666666666666663 2
Q ss_pred ccchhh--hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 78 HSGVSK--SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 78 ~~~~~~--~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
. .++. .+..+++|+.|+++++..+..+.. .+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 137 ~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 137 K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp S-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred c-ccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 2 3332 455666666666666422444432 4555 666666666666665544566666666666666666553211
Q ss_pred eeeeCCCCCCcccEEEeccCCcccc--------------------------------eeccCcccccccceeeccCcCcC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDE--------------------------------WTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~--------------------------------~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
... +..+++|+.|++++ +.++. +|..+..+++|+.|++++|.+.
T Consensus 215 -~~~-~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 215 -EIF-VDVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp -HHH-HHHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred -hhh-hhhcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 112 22356666666666 34432 3334557789999999999976
Q ss_pred CCcccc-ccCcCccEEEccCCc
Q 039403 203 KLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 203 ~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
.+|..+ ..+++|+++++++|+
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhcCCCCCEEEeeCCC
Confidence 677764 789999999999995
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.3e-22 Score=165.95 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|. .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. +.++++|++|++++|. .
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l 153 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--L 153 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred CCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--c
Confidence 4555666554 56666666666 6655 5555555556666666666644444 445544 3566667777776664 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--------------------------------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-------------------------------------------------- 107 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------------------------------- 107 (249)
....+..+..+++|+.|+++++. +..+..
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 232 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEE
T ss_pred CccChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEE
Confidence 44444456666666666666633 221110
Q ss_pred ----------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcc
Q 039403 108 ----------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWL 177 (249)
Q Consensus 108 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (249)
++.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ .+.. ...+++|++|++++ +.+
T Consensus 233 l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~L~~-n~l 307 (390)
T 3o6n_A 233 LQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSH-NHL 307 (390)
T ss_dssp CCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECS-SSCCTTCCEEECCS-SCC
T ss_pred CCCCCCcccHHHcC-CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcc-cCCCCCCCEEECCC-Ccc
Confidence 1222 3344444444444443333444444445555554444432 1222 33445555555555 344
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+|..+..+++|+.|++++|.+.. ++ +..+++|+++++++|+
T Consensus 308 ~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 308 LHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred eecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 4444444455555555555555432 22 4455666666666665
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.7e-23 Score=185.35 Aligned_cols=212 Identities=16% Similarity=0.097 Sum_probs=164.3
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCC-----------------CCCcCC--CCccccccccccCC--CCcchhcC
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAP-----------------PKNYFS--SLKNLIFISALHPS--SCTPDILG 60 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~--~~~~~~l~ 60 (249)
++.++.+|+.++++++|++| +++| .+.+. +|..++ ++++|++|++.++. +.+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45777899999999999999 9988 78775 999999 99999999977766 78899999
Q ss_pred CCcccCeEEEecCcccccc-chhhhhcCC------CCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc
Q 039403 61 RLPSVQTLRISGNLSCYHS-GVSKSLCEL------HKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
++++|+.|++++|. ...+ .+|..+.++ ++|+.|+++++. +..++. .+.. +++|+.|++++|.+++..|
T Consensus 271 ~l~~L~~L~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~-l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 271 ALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQK-MKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TCSSCCEEECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTT-CTTCCEEECCSCCCEEECC
T ss_pred cCCCCCEEECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhcc-CCCCCEEeCcCCcCccchh
Confidence 99999999999984 1233 578777766 899999999987 777765 6778 8889999998888876666
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCc-ccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCcccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE-LKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLPEEL 208 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~~~l 208 (249)
.++.+++|+.|++++|.+. . .+.. +..+++ |++|++++ +.++.+|..+..++ +|+.|++++|.+.+.+|..+
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~-lp~~-l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-E-IPAN-FCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-E-CCTT-SEEECTTCCEEECCS-SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred -hhCCCCCCCEEECCCCccc-c-ccHh-hhhhcccCcEEEccC-CcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 7777788888888887766 2 2445 666677 88888887 56667776665443 77777777777766666666
Q ss_pred c-------cCcCccEEEccCCc
Q 039403 209 W-------CIKSLRKLDLHWPQ 223 (249)
Q Consensus 209 ~-------~l~~L~~l~l~~~~ 223 (249)
. .+++|++|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSC
T ss_pred cccccccccCCCCCEEECcCCc
Confidence 5 56677777777764
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-22 Score=164.25 Aligned_cols=211 Identities=22% Similarity=0.185 Sum_probs=174.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCC-cCCCCccccccccccCC-CC---cchhcCCCcccCeEEEecCcc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKN-YFSSLKNLIFISALHPS-SC---TPDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~-~~---~~~~l~~l~~L~~L~l~~~~~ 75 (249)
++..++++|..+. ++|++| +++| .+. .+|. .++.+++|++|++.++. .. .+..+..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~n-~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELESN-KLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSS-CCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-
T ss_pred CCCCcccCCCCCC--CCCCEEECCCC-ccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-
Confidence 4678999998764 799999 8888 777 4554 47899999999966655 33 35677789999999999995
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCc
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGR 153 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 153 (249)
. ..++..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 90 -i-~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 90 -V-ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp -E-EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred -c-ccChhhcCCCCCCCEEECCCCc-ccccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 3 4567778899999999999976 666553 5777 89999999999998877778889999999999999998764
Q ss_pred eeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 154 KLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 154 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
..+.. +..+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.
T Consensus 166 ~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 166 FLPDI-FTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cchhH-HhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 44667 88999999999999 677766 5677899999999999999876555578889999999999995
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=169.10 Aligned_cols=214 Identities=17% Similarity=0.136 Sum_probs=154.5
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|+.| +++| .+....+..+..+++|++|++.++. ..++. .+..+++|++|++++|.
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-- 147 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-- 147 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--
Confidence 3456666665 456777777777 6666 6655555666777777777755554 44444 46677777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
.....+..+..+++|+.|+++++..+..+.. .+.. +++|+.|++++|.++ .. +.+..+++|+.|++++|.+.+..
T Consensus 148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~- 223 (440)
T 3zyj_A 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLSAIR- 223 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCS-SC-CCCTTCSSCCEEECTTSCCCEEC-
T ss_pred ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCc-cc-cccCCCcccCEEECCCCccCccC-
Confidence 4443344667777777777776332555544 5677 888999999999886 33 35788889999999999887543
Q ss_pred eeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|+.|++++ +.++.+ +..+..+++|+.|++++|.+....+..+..+++|+.+++++|+
T Consensus 224 ~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 PGS-FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTT-TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhh-hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 556 78899999999999 677755 4457789999999999999876445567889999999999985
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5e-22 Score=174.79 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+|+ .++.+++|+.| +++| .+.+..|..++.+++|++|++.++. ..+|.. ++++++|+.|++++|.
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-- 158 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-- 158 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--
Confidence 34566666654 56667777777 6666 6665555556677777777755544 555544 4667777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCC
Q 039403 77 YHSGVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.....|..+..+++|+.|+++++.
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCChhhhhcCCcCcEEECcCCC
Confidence 544455566677777777776643
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.6e-22 Score=172.26 Aligned_cols=108 Identities=21% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCccccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLE 191 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 191 (249)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.+ +..+..+++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRM-FENLDKLEVLDLSY-NHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGG-GTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhH-hcCcccCCEEECCC-CcccccChhhcccccccc
Confidence 555666666666655444455666666666666666664322 344 56677777777777 455544 55566777777
Q ss_pred ceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 192 SLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 192 ~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|++++|.+.+..+..+..+++|+++++++|+
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 77777777654333345677777788777764
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=167.56 Aligned_cols=215 Identities=17% Similarity=0.099 Sum_probs=144.1
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+ |..+..+++|++| +++| .+....+..++.+++|++|++.++. . ..+..+.++++|+.|++++|.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-- 139 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-- 139 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT--
T ss_pred CCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc--
Confidence 356677777 5677888888888 7777 6664444456777788888755554 2 334556677777777777775
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-------------------------cCCCCCCCccEEEEEcccCCCCCc
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-------------------------SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
.....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|...+..+
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEEC
T ss_pred cceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccC
Confidence 444445556666667776666644 433332 3344 4555555555554443344
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCcccccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
.......+|+.|++++|.+.+.. ... +..+++|+.|++++ +.++.++. .+..+++|+.|++++|.+.+..+..+..
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVP-YLA-VRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCC-HHH-HTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cccccCccccEEECcCCcccccC-HHH-hcCccccCeeECCC-CcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 43444446666666666665422 234 67789999999999 66776654 4678999999999999988766788899
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.
T Consensus 295 l~~L~~L~L~~N~ 307 (477)
T 2id5_A 295 LNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCc
Confidence 9999999999995
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.9e-22 Score=175.03 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=54.4
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee--eeCCCCCCcccEEEeccCCcccce-eccCccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA--CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPK 189 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 189 (249)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+...+ .. +..+++|++|++++ +.++++ |..+..+++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSF-CDLSSIDQHAFTSLKM 501 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTT-SCCCEECTTTTTTCTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCC-CccCccChhhhccccC
Confidence 44455555555544444444455555555555555554432111 22 34455555555555 344433 344555556
Q ss_pred ccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 190 LESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 190 L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
|+.|++++|.+.+..|..+..++.| ++++++|
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 6666666665555455555555555 6666655
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.2e-22 Score=163.45 Aligned_cols=211 Identities=18% Similarity=0.116 Sum_probs=165.3
Q ss_pred CCCCcc--ccchhhh-------hcccccee-eecCcccCCCCCCcC--CCCccccccccccCC-CCcchhcCCC-----c
Q 039403 2 PSSYID--QSPEDIW-------MMQKLMHL-NFGCITLPAPPKNYF--SSLKNLIFISALHPS-SCTPDILGRL-----P 63 (249)
Q Consensus 2 ~~~~l~--~lp~~i~-------~l~~L~~L-l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~~~~l~~l-----~ 63 (249)
+++.++ .+|..+. .+++|++| +++| .+.+.+|..+ +.+++|++|++.++. ...|..++.+ +
T Consensus 71 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~ 149 (312)
T 1wwl_A 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149 (312)
T ss_dssp CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCT
T ss_pred ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcC
Confidence 344443 3666665 79999999 8888 8888888876 889999999966666 5557766666 8
Q ss_pred ccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceee---ee--cCCCCCCCccEEEEEcccCCC--CCc-cccc
Q 039403 64 SVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRM---VL--SEYQFPPSLIQLSLSNTELME--DPM-PMLE 135 (249)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l---~l--~~~~~~~~L~~L~l~~~~~~~--~~~-~~~~ 135 (249)
+|++|++++|. .....+..+..+++|+.|+++++. +... .. .+.. +++|+.|++++|.+++ ..+ ..+.
T Consensus 150 ~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 150 GLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNP-ELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCT-TCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCC-cCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHh
Confidence 99999999997 666666889999999999999976 4331 11 2367 8999999999999873 122 3345
Q ss_pred CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 136 RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
.+++|+.|++++|.+.+...... +..+++|++|++++ |.++.+|..+. ++|+.|++++|.+.+ +|. +..+++|+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~ 299 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVG 299 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSC-CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEE
T ss_pred cCCCCCEEECCCCcCCcccchhh-hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCC
Confidence 78999999999999877542234 55678999999999 67888888766 899999999999765 466 88899999
Q ss_pred EEEccCCc
Q 039403 216 KLDLHWPQ 223 (249)
Q Consensus 216 ~l~l~~~~ 223 (249)
++++++|+
T Consensus 300 ~L~L~~N~ 307 (312)
T 1wwl_A 300 NLSLKGNP 307 (312)
T ss_dssp EEECTTCT
T ss_pred EEeccCCC
Confidence 99999996
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=7.9e-22 Score=167.92 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=51.5
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCcccccc
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
..++.+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKID-DNA-FWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhcccCCCCCEEECCCCcccccC-hhH-hcCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 33445555666666555554322 334 55566666666666 445544 344556666666666666665544556666
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
+++|+++++++|.
T Consensus 370 l~~L~~L~L~~N~ 382 (455)
T 3v47_A 370 LPNLKELALDTNQ 382 (455)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccccEEECCCCc
Confidence 6677777776664
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=5.4e-22 Score=158.32 Aligned_cols=211 Identities=17% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+..+.++|..+. ++|++| +++| .+.+..+..++.+++|++|++.++. ..++ ..+.++++|++|++++|. ...
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 90 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQS 90 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCE
T ss_pred CCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--cCc
Confidence 567888998775 589999 8888 7776666688999999999976666 5444 468899999999999996 666
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC-CCcccccCCCCCceEEeeccccCCceeee
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME-DPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
..+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++ ..+..+..+++|++|++++|.+.+.. +.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~ 167 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CT 167 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GG
T ss_pred cChhhhcCCccccEEECCCCC-ccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HH
Confidence 566788999999999999977 666554 5777 8999999999999976 35788999999999999999886532 33
Q ss_pred eCCCCCCccc----EEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 158 AGSGGFPELK----VLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 158 ~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. +..+++|+ .+++++ +.++.++.......+|+.|++++|.+.+..+..+..+++|+++++++|+
T Consensus 168 ~-~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 168 D-LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp G-GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred H-hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 3 44445555 899999 7888888777667789999999999775434456889999999999774
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.1e-21 Score=165.44 Aligned_cols=210 Identities=20% Similarity=0.125 Sum_probs=175.1
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++..++++|..+. ++++.| +++| .+.+..+..++++++|++|++.++. .. .+..+.++++|++|++++|. ..
T Consensus 62 ~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~ 136 (452)
T 3zyi_A 62 TRRGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW--LT 136 (452)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CS
T ss_pred CCCCcCccCCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc--CC
Confidence 4567899998775 699999 9888 8887778889999999999966666 44 44678899999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC-cccccCCCCCceEEeeccccCCceee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
...+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|...+.. +..+..+++|++|++++|.+.+.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred ccChhhhcccCCCCEEECCCCC-cceeCHhHHhc-CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---
Confidence 5555668899999999999988 887775 6778 999999999995443333 34688899999999999998762
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|+.|++++ |.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 212 ~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CC-CTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cc-ccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 34 77899999999999 677755 6678899999999999999887667788999999999999995
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=164.45 Aligned_cols=212 Identities=15% Similarity=0.056 Sum_probs=170.5
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++|++| +++| .+.+..+..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--LS 113 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CS
T ss_pred CCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc--CC
Confidence 5788999999775 599999 8888 7775555589999999999966666 444 4568999999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEccc-CCCCCcccccCCCCCceEEeeccccCCcee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTE-LMEDPMPMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
...+..+..+++|++|+++++. +..++. .+.. +++|+.|++++|. ++...+..+..+++|++|++++|.+.+..
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 190 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE- 190 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhcc-CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-
Confidence 4444558999999999999987 777765 5778 9999999999994 55444577889999999999999887644
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccCc-ccccccceeeccCcCcCC-------------------------------
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGAG-ALPKLESLIVNPCAYLRK------------------------------- 203 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~------------------------------- 203 (249)
+.. +..+++|++|++++ +.++.++..+. .+++|+.|++++|.+.+.
T Consensus 191 ~~~-l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 191 PKS-LKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTT-TTTCSEEEEEEEEC-SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHH-HhccccCCeecCCC-CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 556 88899999999999 66777665543 578999999999987652
Q ss_pred CccccccCcCccEEEccCCc
Q 039403 204 LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 204 l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.+..+++|+++++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 23445677888888888885
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.8e-21 Score=159.31 Aligned_cols=213 Identities=18% Similarity=0.177 Sum_probs=119.1
Q ss_pred CCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++.+|+ .+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|..+. ++|++|++++|. ..
T Consensus 62 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~--i~ 136 (332)
T 2ft3_A 62 QNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR--IR 136 (332)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC--CC
T ss_pred CCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc--cC
Confidence 4555666643 56666666666 6555 5554445566666666666644444 44554443 566666666664 33
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee---cCCC-------------------CCCCccEEEEEcccCCCCCcccccC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQ-------------------FPPSLIQLSLSNTELMEDPMPMLER 136 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~ 136 (249)
...+..+..+++|+.|+++++. +..... .+.. ..++|+.|++++|.+++..+..+..
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred ccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence 3333456677777777777644 321110 1111 0135556666666655444455666
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccccc------
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC------ 210 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~------ 210 (249)
+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.+|..+..+++|+.|++++|.+.+.-+..+..
T Consensus 216 l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIE-NGS-LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp CTTCSCCBCCSSCCCCCC-TTG-GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred CCCCCEEECCCCcCCcCC-hhH-hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 666666666666665432 334 55566677777766 456666666666667777777776654322222222
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
.+.++.+++++|+
T Consensus 293 ~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 293 RAYYNGISLFNNP 305 (332)
T ss_dssp SCCBSEEECCSSS
T ss_pred cccccceEeecCc
Confidence 3456666776665
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=3.2e-21 Score=169.78 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=117.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++++|+.+..+++|++| +.+| .+.+..|..++.+++|++|++.++. ..++. .+..+++|++|++++|.
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-- 361 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-- 361 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC--
T ss_pred ccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc--
Confidence 4577788888888888888888 7777 6665556666667777777754444 23433 25566666666666664
Q ss_pred cccch--hhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCC
Q 039403 77 YHSGV--SKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 77 ~~~~~--~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 152 (249)
..... +..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTT-CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcC-CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 33222 4445556666666666544 444332 3444 5555555555555543322 224555555555555555543
Q ss_pred ceeeeeCCCCCCcccEEEeccCCcccc--ee--ccCcccccccceeeccCcCcCCCccccccCcCccEEEccCC
Q 039403 153 RKLACAGSGGFPELKVLHLKSMYWLDE--WT--MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 153 ~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
.. +.. +..+++|++|++++ +.+++ ++ ..+..+++|+.|++++|.+.+..|..+..+++|+++++++|
T Consensus 440 ~~-~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 440 SS-EQL-FDGLPALQHLNLQG-NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TC-TTT-TTTCTTCCEEECTT-CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cC-HHH-HhCCCCCCEEECCC-CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 32 333 44555555555555 33331 11 22445555555555555554444445555555555555555
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=163.34 Aligned_cols=210 Identities=18% Similarity=0.136 Sum_probs=174.6
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
.+..++++|..+. ++++.| +.+| .+....+..+.++++|++|++.++. .. .+..+.++++|+.|++++|. ..
T Consensus 51 ~~~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~ 125 (440)
T 3zyj_A 51 VRKNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR--LT 125 (440)
T ss_dssp CSCCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC--CS
T ss_pred CCCCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc--CC
Confidence 4678899998876 799999 8888 8877777889999999999976666 44 44678899999999999996 55
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC-CcccccCCCCCceEEeeccccCCceee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED-PMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|..... .+..+..+++|++|++++|.+.. .
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~-l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~ 200 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---I 200 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT-CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---C
T ss_pred eeCHhHhhccccCceeeCCCCc-ccccCHHHhhh-CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---c
Confidence 4445578999999999999988 887775 6778 99999999999644333 33468889999999999998875 2
Q ss_pred eeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+++|+.|++++ |.++.+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 201 ~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CC-CTTCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred cc-cCCCcccCEEECCC-CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 34 77899999999999 677765 5678899999999999999877667788899999999999995
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6e-21 Score=156.05 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=169.4
Q ss_pred CCCCCcccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++.+ |..++.+++|++| +++| .+. .+|..+. ++|++|++.++. ..+ +..+.++++|+.|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 156 (330)
T 1xku_A 83 LINNKISKISPGAFAPLVKLERLYLSKN-QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-- 156 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC--
T ss_pred CCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc--
Confidence 467889888 7889999999999 8888 766 5676655 799999966666 444 4468899999999999996
Q ss_pred cc--cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 77 YH--SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 77 ~~--~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
.. +..+..+..+++|+.|+++++. +..++..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCccCcChhhccCCCCcCEEECCCCc-cccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 43 2456778999999999999977 77654322 468999999999998666788999999999999999887543
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccc------cCcCccEEEccCCc
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELW------CIKSLRKLDLHWPQ 223 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~------~l~~L~~l~l~~~~ 223 (249)
+.. +..+++|++|++++ +.++.+|..+..+++|+.|++++|.+.+.-+..+. ..+.++.+++++|+
T Consensus 233 -~~~-~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 233 -NGS-LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -TTT-GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -hhh-ccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 345 67789999999999 68889999899999999999999997653223332 24778999999997
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=7.9e-22 Score=178.82 Aligned_cols=210 Identities=16% Similarity=0.073 Sum_probs=141.6
Q ss_pred CCccccchhhhhcccccee-eecCcccCC-----------------CCCCcCC--CCccccccccccCC--CCcchhcCC
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPA-----------------PPKNYFS--SLKNLIFISALHPS--SCTPDILGR 61 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~--~~~~~~l~~ 61 (249)
+.++.+|+.++++++|+.| +++| .+.+ .+|..++ ++++|++|++.++. +.+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 4455577777777777777 7777 6665 2777776 77777777755555 567777777
Q ss_pred CcccCeEEEecCcccccc-chhhhhcCCC-------CCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc
Q 039403 62 LPSVQTLRISGNLSCYHS-GVSKSLCELH-------KLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
+++|+.|++++|. ...+ .+|..+.+++ +|+.|+++++. +..++. .+.. +++|+.|++++|.++ ..|
T Consensus 514 L~~L~~L~Ls~N~-~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 514 LPELQSLNIACNR-GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK-MVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CSSCCEEECTTCT-TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTT-CTTCCEEECTTSCCC-BCC
T ss_pred CCCCCEEECcCCC-CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhc-CCCCCEEECCCCCcc-cch
Confidence 7777777777773 0222 3565554443 77777777776 666655 5667 777888888777776 555
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCc-ccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCcc--
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPE-LKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLPE-- 206 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~~-- 206 (249)
.++.+++|+.|++++|.+. .. +.. +..+++ |+.|++++ +.++.+|..+..++ +|+.|++++|.+.+.+|.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~l-p~~-l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EI-PED-FCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CC-CTT-SCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred -hhcCCCcceEEECcCCccc-cc-hHH-HhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 6777777888888777766 33 555 666676 88888877 55667776665544 378888888877664442
Q ss_pred -ccc--cCcCccEEEccCCc
Q 039403 207 -ELW--CIKSLRKLDLHWPQ 223 (249)
Q Consensus 207 -~l~--~l~~L~~l~l~~~~ 223 (249)
.+. .+++|+.|++++|.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSC
T ss_pred hhhccccCCCcCEEEccCCc
Confidence 222 33478888888874
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=4.3e-21 Score=169.93 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=157.3
Q ss_pred CCCCCccccchhhhhccc-ccee-eecCcccCCCCCCcCCCCc--cccccccccCC--CCcchhcC-------CCcccCe
Q 039403 1 MPSSYIDQSPEDIWMMQK-LMHL-NFGCITLPAPPKNYFSSLK--NLIFISALHPS--SCTPDILG-------RLPSVQT 67 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~-L~~L-l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~--~~~~~~l~-------~l~~L~~ 67 (249)
++++.++.+|+.+..+++ |++| +++| .+. .+|..++.+. +|++|++.++. +..|..+. .+++|+.
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 456777778888888887 8888 7777 666 6777666644 78888855555 45566666 6778888
Q ss_pred EEEecCccccccchhh-hhcCCCCCcEEEEecCCCceeeeecC-C-------CCCCCccEEEEEcccCCCCCccccc--C
Q 039403 68 LRISGNLSCYHSGVSK-SLCELHKLECLKLVNESKLSRMVLSE-Y-------QFPPSLIQLSLSNTELMEDPMPMLE--R 136 (249)
Q Consensus 68 L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l~~-~-------~~~~~L~~L~l~~~~~~~~~~~~~~--~ 136 (249)
|++++|. .. .+|. .+..+++|+.|+++++. +..++..+ . + +++|+.|++++|.++ ..|..+. .
T Consensus 438 L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 438 INLSNNQ--IS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKN-TYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp EECCSSC--CC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTT-GGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred EECcCCc--cC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccc-cCCccEEECcCCcCC-ccChhhhhcc
Confidence 8888885 44 4443 34568888888888877 77555422 2 2 238999999999988 6777776 8
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc------CCcccceeccCcccccccceeeccCcCcCCCcccccc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS------MYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
+++|+.|++++|.+.+ . +.. +..+++|+.|++++ +...+.+|..+..+++|+.|++++|.+ +.+|..+.
T Consensus 512 l~~L~~L~Ls~N~l~~-i-p~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-F-PTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp CTTCCEEECCSSCCSS-C-CCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred CCCcCEEECCCCCCCC-c-Chh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 9999999999999887 3 666 77899999999954 222447888888999999999999997 67887765
Q ss_pred CcCccEEEccCCc
Q 039403 211 IKSLRKLDLHWPQ 223 (249)
Q Consensus 211 l~~L~~l~l~~~~ 223 (249)
++|+++++++|+
T Consensus 587 -~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 -PNISVLDIKDNP 598 (636)
T ss_dssp -TTCCEEECCSCT
T ss_pred -CcCCEEECcCCC
Confidence 899999999994
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=3.2e-21 Score=154.57 Aligned_cols=195 Identities=18% Similarity=0.143 Sum_probs=164.3
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCc-chhcCCCcccCeEEEecCcc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCT-PDILGRLPSVQTLRISGNLS 75 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~ 75 (249)
++++.++.+|. .+..+++|++| +++| .+.+..+..++.+++|++|++.++. ..+ +..+..+++|++|++++|.
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~- 116 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG- 116 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-
Confidence 46888999985 58999999999 8888 8877778889999999999977664 444 6678899999999999997
Q ss_pred ccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCce
Q 039403 76 CYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRK 154 (249)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 154 (249)
.....+..+..+++|++|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 117 -l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 117 -LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred -CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 666567788999999999999987 777665 4778 999999999999998544456889999999999999987644
Q ss_pred eeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCC
Q 039403 155 LACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 203 (249)
+.. +..+++|+.|++++ +.++.++. .+..+++|+.|++++|++..+
T Consensus 194 -~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 194 -PHA-FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp -TTT-TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred -HhH-ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 556 78899999999999 67776664 477899999999999997653
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=6.7e-21 Score=159.25 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=141.3
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++++|.. +..+++|++| +.+| .+....+..++.+++|++|++.++. ..+ +..++++++|++|++++|. .
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 129 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--L 129 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred cCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--c
Confidence 46788999987 6889999999 8888 7776666789999999999976666 444 4568899999999999995 4
Q ss_pred ccchhh-hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccc----------------------
Q 039403 78 HSGVSK-SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPM---------------------- 133 (249)
Q Consensus 78 ~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------- 133 (249)
. .+|. .+..+++|++|+++++. +..+.. .+.. +++|+.|++++|.+++.....
T Consensus 130 ~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 130 S-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSS-CTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred C-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccC-CCCCCEEECCCCcCCccccccccccceeecccccccccCCCCc
Confidence 4 4544 46899999999999977 776654 4667 788888888888765322111
Q ss_pred -------------------------------------ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCc
Q 039403 134 -------------------------------------LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYW 176 (249)
Q Consensus 134 -------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 176 (249)
+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~-n~ 283 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHP-FVKMQRLERLYISN-NR 283 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGG-GTTCSSCCEEECCS-SC
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC-hhH-ccccccCCEEECCC-Cc
Confidence 223344444444444443322 333 44555555555555 44
Q ss_pred ccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 177 LDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++.++.....+++|+.|++++|.+. .+|..+..+++|+++++++|.
T Consensus 284 l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 284 LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 5555554455555555555555543 344445555556666665554
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.8e-21 Score=176.56 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=167.9
Q ss_pred cchhhh--hcccccee-eecCcccCCCCCCcCCCCccccccccccCC---C-CcchhcCCCc-------ccCeEEEecCc
Q 039403 9 SPEDIW--MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS---S-CTPDILGRLP-------SVQTLRISGNL 74 (249)
Q Consensus 9 lp~~i~--~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~-~~~~~l~~l~-------~L~~L~l~~~~ 74 (249)
+|+.++ .+++|+.| +++| .+.+.+|..++++++|++|++.++. + .+|..+++++ +|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 999988 99999999 9998 8888999999999999999976664 2 5777666555 99999999996
Q ss_pred cccccchhh--hhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC-CceEEeeccccC
Q 039403 75 SCYHSGVSK--SLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR-LQVLKLKRNSYL 151 (249)
Q Consensus 75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~ 151 (249)
.. .+|. .+.++++|+.|+++++. +..++ .+.. +++|+.|++++|.+. ..|..+..+++ |+.|++++|.+.
T Consensus 560 --L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 560 --LE-EFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp --CC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred --CC-ccCChhhhhcCCCCCEEECCCCC-cccch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 55 7887 89999999999999988 88777 7888 999999999999998 78888999999 999999999987
Q ss_pred CceeeeeCCCCCC--cccEEEeccCCccc-ceec---cCc--ccccccceeeccCcCcCCCccccc-cCcCccEEEccCC
Q 039403 152 GRKLACAGSGGFP--ELKVLHLKSMYWLD-EWTM---GAG--ALPKLESLIVNPCAYLRKLPEELW-CIKSLRKLDLHWP 222 (249)
Q Consensus 152 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~---~~~--~~~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~l~l~~~ 222 (249)
.. +.. +...+ +|+.|++++ +.++ .+|. ... .+++|+.|++++|.+. .+|..+. .+++|++|++++|
T Consensus 633 -~l-p~~-~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 633 -YI-PNI-FNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp -SC-CSC-CCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred -cC-chh-hhccccCCCCEEECcC-CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 33 555 55544 499999999 5555 3332 222 3458999999999977 6777654 7899999999999
Q ss_pred c
Q 039403 223 Q 223 (249)
Q Consensus 223 ~ 223 (249)
.
T Consensus 708 ~ 708 (876)
T 4ecn_A 708 L 708 (876)
T ss_dssp C
T ss_pred c
Confidence 5
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.6e-21 Score=171.81 Aligned_cols=209 Identities=21% Similarity=0.112 Sum_probs=91.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccc-
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSG- 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 80 (249)
++.++.+| .+..+++|++| +.+| .+ +.+| .+ .+++|++|++.++....+..+..+++|+.|++++|. ....
T Consensus 294 ~~~~~~l~-~l~~~~~L~~L~l~~n-~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~~~ 366 (606)
T 3vq2_A 294 GVSIKYLE-DVPKHFKWQSLSIIRC-QL-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA--LSFSG 366 (606)
T ss_dssp SCCCCCCC-CCCTTCCCSEEEEESC-CC-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC--EEEEE
T ss_pred Cccchhhh-hccccccCCEEEcccc-cC-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCc--cCCCc
Confidence 45556666 56666666666 6665 44 3455 23 555555555333321111123344444444444442 2111
Q ss_pred -hhhhhcCCCCCcEEEEecCCCceeeee-------------------------cCCCCCCCccEEEEEcccCCCCCcccc
Q 039403 81 -VSKSLCELHKLECLKLVNESKLSRMVL-------------------------SEYQFPPSLIQLSLSNTELMEDPMPML 134 (249)
Q Consensus 81 -~~~~l~~l~~L~~L~l~~~~~L~~l~l-------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~ 134 (249)
.+..+..+++|+.|+++++. +..++. .+.. +++|+.|++++|.+.+..+..+
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEEECTTSCCEECCTTTT
T ss_pred chhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEEECcCCCCCccchhhh
Confidence 12333334444444433322 111111 2333 4445555555554443344444
Q ss_pred cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcC
Q 039403 135 ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKS 213 (249)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~ 213 (249)
..+++|+.|++++|.+.+...+.. ++.+++|++|++++ +.++.+ +..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred cCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 455555555555554444322333 44445555555554 233322 233444444444444444444333444444444
Q ss_pred ccEEEccCC
Q 039403 214 LRKLDLHWP 222 (249)
Q Consensus 214 L~~l~l~~~ 222 (249)
|+++++++|
T Consensus 523 L~~L~l~~N 531 (606)
T 3vq2_A 523 LSTLDCSFN 531 (606)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 444444444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=8.5e-21 Score=166.94 Aligned_cols=213 Identities=17% Similarity=0.127 Sum_probs=154.4
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++.+|+. +..+++|+.| +++| .+.+..+..++.+++|++|++.++. ..++ ..++++++|+.|++++|. .
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 135 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--L 135 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--C
Confidence 56788999987 6889999999 9888 8887777789999999999966666 4444 467899999999999996 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC--------------------------
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP-------------------------- 130 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~-------------------------- 130 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTT-CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhc-CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchh
Confidence 54334456899999999999976 665544 4555 666666666666554211
Q ss_pred ---------------------------------cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcc
Q 039403 131 ---------------------------------MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWL 177 (249)
Q Consensus 131 ---------------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (249)
+..+..+++|+.|++++|.+.+.. +.. ++.+++|+.|++++ +.+
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~-N~l 290 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHP-FVKMQRLERLYISN-NRL 290 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGG-GTTCSSCCEEECTT-SCC
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-HHH-hcCccCCCEEECCC-CCC
Confidence 223445566666666666665543 445 66677777777777 566
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++.....+++|+.|++++|.+. .+|..+..+++|++|++++|.
T Consensus 291 ~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 667766666777777777777765 566667777777777777775
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.2e-20 Score=153.59 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=134.4
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .+..+++|++| +++| .+.. ++. +..+++|++|++.++. ...+..+..+++|++|++++|. ..
T Consensus 95 L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~--~~ 168 (347)
T 4fmz_A 95 IGTNKITDIS-ALQNLTNLRELYLNED-NISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VK 168 (347)
T ss_dssp CCSSCCCCCG-GGTTCTTCSEEECTTS-CCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC--CC
T ss_pred ccCCcccCch-HHcCCCcCCEEECcCC-cccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC--cC
Confidence 4577788876 57888888888 7777 6553 333 7778888888865554 3334446777777777777774 32
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeee------------e---------cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMV------------L---------SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~------------l---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
. .+. +..+++|+.|+++++. +..+. + .+.. +++|+.|++++|.+++ .+. +..+
T Consensus 169 ~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~l~~n~l~~-~~~-~~~l 242 (347)
T 4fmz_A 169 D-VTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITD-LSP-LANL 242 (347)
T ss_dssp C-CGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGG-CTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred C-chh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhc-CCcCCEEEccCCccCC-Ccc-hhcC
Confidence 2 222 6667777777776643 33222 1 2445 6677777777777663 222 6677
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEE
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKL 217 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l 217 (249)
++|+.|++++|.+.+. .. +..+++|++|++++ +.+++++ .+..+++|+.|++++|.+.+..+..+..+++|+++
T Consensus 243 ~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~-n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI---NA-VKDLTKLKMLNVGS-NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCS-SCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCCCEEECCCCccCCC---hh-HhcCCCcCEEEccC-CccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 7777777777766542 34 56677777777777 4666553 35667777777777777666556667777777777
Q ss_pred EccCCc
Q 039403 218 DLHWPQ 223 (249)
Q Consensus 218 ~l~~~~ 223 (249)
++++|+
T Consensus 317 ~L~~n~ 322 (347)
T 4fmz_A 317 FLSQNH 322 (347)
T ss_dssp ECCSSS
T ss_pred EccCCc
Confidence 777775
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=162.64 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.++.+| ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. .+++|++|++++|. .
T Consensus 28 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~--l 102 (520)
T 2z7x_B 28 ISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA--F 102 (520)
T ss_dssp CCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC--C
T ss_pred CCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc--c
Confidence 4567777776 467778888888 7777 6666567777778888888855555 556655 67788888888775 4
Q ss_pred cc-chhhhhcCCCCCcEEEEecCC
Q 039403 78 HS-GVSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~~ 100 (249)
.+ .+|..++++++|++|+++++.
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccccchhhhccCCcceEEEecCcc
Confidence 44 356777788888888887744
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=7.6e-21 Score=155.61 Aligned_cols=208 Identities=17% Similarity=0.145 Sum_probs=146.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++++.| +++| .+.+..+..++.+++|++|++.++. .. .|..+.++++|++|++++|. .
T Consensus 41 ~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l- 114 (332)
T 2ft3_A 41 SDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH--L- 114 (332)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC--C-
T ss_pred CCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc--C-
Confidence 4677788887763 688888 7777 6765556678888888888866555 43 46678888888888888884 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCC--CCcccccCC------------------
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELME--DPMPMLERL------------------ 137 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l------------------ 137 (249)
..+|..+. ++|++|+++++. +..+.. .+.. +++|+.|++++|.++. ..+..+..+
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSG-LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSS-CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS
T ss_pred CccCcccc--ccCCEEECCCCc-cCccCHhHhCC-CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc
Confidence 34554443 788888888876 766654 4677 8889999998887742 233333333
Q ss_pred --CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCc
Q 039403 138 --PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSL 214 (249)
Q Consensus 138 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L 214 (249)
++|+.|++++|.+.+.. +.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 191 ~~~~L~~L~l~~n~i~~~~-~~~-l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 191 LPETLNELHLDHNKIQAIE-LED-LLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SCSSCSCCBCCSSCCCCCC-TTS-STTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ccCCCCEEECCCCcCCccC-HHH-hcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 34555555555554432 334 66777888888888 56665554 5677888888888888866 677778888888
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+++++++|.
T Consensus 267 ~~L~l~~N~ 275 (332)
T 2ft3_A 267 QVVYLHTNN 275 (332)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 888888885
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=8.4e-21 Score=167.12 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=141.2
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
+.+...+..+..+++|+.| +.++ .+. .+| .+..+++|++|++.++. +.+| .+ .+++|+.|++++|. .....
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~-~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~--~~~~~ 344 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGV-SIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNK--GSISF 344 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESC-CCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCS--SCEEC
T ss_pred ccccccccccccCCCCCEEEecCc-cch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCc--Cccch
Confidence 3444444448999999999 8888 664 566 78999999999977777 7787 45 89999999999995 43333
Q ss_pred hhhhcCCCCCcEEEEecCCCceeee---ecCCCCCCCccEEEEEcccCC-----------------------CCCc-ccc
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMV---LSEYQFPPSLIQLSLSNTELM-----------------------EDPM-PML 134 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~---l~~~~~~~~L~~L~l~~~~~~-----------------------~~~~-~~~ 134 (249)
.+..+++|+.|+++++. +.... ..+.. +++|+.|++++|.+. +..+ ..+
T Consensus 345 --~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNA-LSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp --CCCCCTTCCEEECCSSC-EEEEEECCHHHHC-CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred --hhccCCCCCEEECcCCc-cCCCcchhhhhcc-CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhh
Confidence 56789999999999977 66653 24445 566666666665543 2222 234
Q ss_pred cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc--eeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 135 ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE--WTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
..+++|+.|++++|.+.+.. +.. +..+++|++|++++ +.+++ +|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDF-DGI-FLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSCCEECC-TTT-TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCCCCccc-hhh-hcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 44555555555555544322 334 55666777777776 44442 566667777788888888877665666677788
Q ss_pred CccEEEccCCc
Q 039403 213 SLRKLDLHWPQ 223 (249)
Q Consensus 213 ~L~~l~l~~~~ 223 (249)
+|+++++++|.
T Consensus 498 ~L~~L~Ls~N~ 508 (606)
T 3vq2_A 498 RLQLLNMSHNN 508 (606)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 88888888774
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.3e-20 Score=146.91 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=91.4
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
+++++|++.++. ..++. .+.++++|++|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQ-LVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTT-CSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHccc-ccCCC
Confidence 455555544433 33332 45555566666665553 322222334555566666665554 444443 3344 55666
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccceeec
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVN 196 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 196 (249)
+|++++|.++...+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|++|+++
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGV-FDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhH-ccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECC
Confidence 6666666655444444555666666666666554322 223 44556666666665 445544432 4455666666666
Q ss_pred cCcCcCCCccccccCcCccEEEccCCc
Q 039403 197 PCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|.+.+..+..+..+++|+.+++++|+
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCC
Confidence 666543222335556666666666553
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.3e-21 Score=166.21 Aligned_cols=211 Identities=21% Similarity=0.173 Sum_probs=144.4
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCc--------------------CCCCccccccccccCC-CCc---ch
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNY--------------------FSSLKNLIFISALHPS-SCT---PD 57 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~--------------------~~~l~~L~~L~l~~~~-~~~---~~ 57 (249)
++.++.+|..+..+ +|++| +.+| .+. .+|.. ...+++|++|++.++. ... +.
T Consensus 291 ~~~l~~l~~~~~~~-~L~~L~l~~n-~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 291 SVTIERVKDFSYNF-GWQHLELVNC-KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp SCEECSCCBCCSCC-CCSEEEEESC-BCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred CccchhhhhhhccC-CccEEeeccC-ccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 45556666666655 66666 5555 443 33321 1345556666644333 221 44
Q ss_pred hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCccccc
Q 039403 58 ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLE 135 (249)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 135 (249)
.+..+++|+.|++++|. ... ++..+..+++|+.|+++++. +..... .+.. +++|+.|++++|.+.+..+..+.
T Consensus 368 ~~~~~~~L~~L~l~~n~--l~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG--VIT-MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp HHHTCSCCCEEECCSCS--EEE-EEEEEETCTTCCEEECTTSE-EESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccCccCEEECCCCc--ccc-ccccccccCCCCEEEccCCc-cccccchhhhhc-CCCCCEEeCcCCcccccchhhhh
Confidence 55566666666666663 222 33336666666666666644 443322 4566 88899999999988766777888
Q ss_pred CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCCCccccccCcCc
Q 039403 136 RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRKLPEELWCIKSL 214 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L 214 (249)
.+++|+.|++++|.+.+...+.. +..+++|++|++++ +.++++ |..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999998874334667 88899999999999 567755 6778899999999999999877666678899999
Q ss_pred cEEEccCCc
Q 039403 215 RKLDLHWPQ 223 (249)
Q Consensus 215 ~~l~l~~~~ 223 (249)
+++++++|+
T Consensus 521 ~~L~l~~N~ 529 (570)
T 2z63_A 521 QKIWLHTNP 529 (570)
T ss_dssp CEEECCSSC
T ss_pred cEEEecCCc
Confidence 999999985
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=5.1e-21 Score=155.72 Aligned_cols=207 Identities=17% Similarity=0.101 Sum_probs=140.1
Q ss_pred CCccccchh-hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 4 SYIDQSPED-IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 4 ~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
+.+.+.+.. ...+++|++| +++| .+.+..|..++.+++|++|++.++. ...++ +..+++|++|++++|. .. .
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--l~-~ 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--EE-E
T ss_pred cchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--cc-c
Confidence 334433333 2344567777 6666 6665555566677777777754444 32332 6666777777776664 21 1
Q ss_pred hhhh-----------------hcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc-cCCCCCc
Q 039403 81 VSKS-----------------LCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML-ERLPRLQ 141 (249)
Q Consensus 81 ~~~~-----------------l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 141 (249)
++.. ...+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+ ..+++|+
T Consensus 95 l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 1100 1124455666665554 444432 5566 7889999999988875555555 4688999
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
+|++++|.+.+. .. ...+++|++|++++ +.++.++..+..+++|+.|++++|.+. .+|..+..+++|+.+++++
T Consensus 173 ~L~L~~N~l~~~---~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 173 HLNLQYNFIYDV---KG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp EEECTTSCCCEE---EC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred EEECCCCcCccc---cc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 999998887652 23 44588999999999 788888888889999999999999976 5788888999999999999
Q ss_pred Cc
Q 039403 222 PQ 223 (249)
Q Consensus 222 ~~ 223 (249)
|+
T Consensus 247 N~ 248 (317)
T 3o53_A 247 NG 248 (317)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.2e-21 Score=163.85 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=143.2
Q ss_pred cccchhhhhcc----cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 7 DQSPEDIWMMQ----KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 7 ~~lp~~i~~l~----~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
..+|..+..+. +|+.| +++| .+.+..|..++.+++|++|++.++. ...++ +..+++|+.|++++|. .. .
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~ 94 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E 94 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE--EE-E
T ss_pred hhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc--CC-C
Confidence 44555555554 77777 7777 6666566677777777777755554 33333 6677777777777774 22 1
Q ss_pred hhhh-----------------hcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccccc-CCCCCc
Q 039403 81 VSKS-----------------LCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE-RLPRLQ 141 (249)
Q Consensus 81 ~~~~-----------------l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~ 141 (249)
++.. ...+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+. .+++|+
T Consensus 95 l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2110 0124455555555544 444322 5566 78888888888888765666664 688899
Q ss_pred eEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccC
Q 039403 142 VLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHW 221 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~ 221 (249)
.|++++|.+.+. .. ...+++|+.|++++ |.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.+++++
T Consensus 173 ~L~Ls~N~l~~~---~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 173 HLNLQYNFIYDV---KG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEECTTSCCCEE---EC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred EEecCCCccccc---cc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCC
Confidence 999988887653 23 44688999999999 788888888889999999999999977 4788888899999999999
Q ss_pred Cc
Q 039403 222 PQ 223 (249)
Q Consensus 222 ~~ 223 (249)
|+
T Consensus 247 N~ 248 (487)
T 3oja_A 247 NG 248 (487)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.8e-19 Score=143.33 Aligned_cols=193 Identities=22% Similarity=0.211 Sum_probs=158.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchh-cCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDI-LGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. +++++| +++| .+....+..++.+++|++|++.++. ..++.. +.++++|++|++++|. .
T Consensus 23 ~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l 97 (270)
T 2o6q_A 23 CSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--L 97 (270)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--C
T ss_pred ccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--C
Confidence 35788999998765 689999 8888 7876666689999999999976666 666654 5789999999999996 5
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceee
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~ 174 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-E 174 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-T
T ss_pred CcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-h
Confidence 55445677899999999999987 777665 4677 999999999999998655566889999999999999887643 4
Q ss_pred eeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCC
Q 039403 157 CAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 203 (249)
.. +..+++|++|++++ +.++.++.. +..+++|+.|++++|++...
T Consensus 175 ~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GA-FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hH-hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 45 67889999999999 678877764 66899999999999997553
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=7.1e-20 Score=147.11 Aligned_cols=197 Identities=19% Similarity=0.165 Sum_probs=154.5
Q ss_pred hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccccchhhhhcCCC
Q 039403 13 IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELH 89 (249)
Q Consensus 13 i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 89 (249)
+.++++++++ ..++ .+. .+|..+. ++++.|++.++. .. .+..+.++++|+.|++++|. ... ++. ...++
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~-~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTK-LQV-DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--CCE-EEC-CSCCT
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--cCc-ccC-CCCCC
Confidence 5667788888 7666 555 5676554 688899966655 43 45678889999999999985 333 333 26788
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
+|+.|+++++. +..++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|+.|
T Consensus 78 ~L~~L~Ls~N~-l~~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L 153 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGL-LTPTPKLEKL 153 (290)
T ss_dssp TCCEEECCSSC-CSSCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTT-TTTCTTCCEE
T ss_pred cCCEEECCCCc-CCcCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhh-cccccCCCEE
Confidence 99999999987 8777666777 889999999999998655577888999999999999887533 444 6678899999
Q ss_pred EeccCCcccceeccC-cccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 170 HLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 170 ~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++++ |.++.++... ..+++|+.|++++|.+. .+|..+...+.|+.+++++|+
T Consensus 154 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLAN-NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ECCC-CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 9998 7788887654 57899999999999976 688888888899999999875
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=4.7e-20 Score=146.86 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=107.3
Q ss_pred hhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCC
Q 039403 13 IWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHK 90 (249)
Q Consensus 13 i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (249)
...+++|+.| +.++ .+. .+ ..++.+++|++|++.++. ..+ +.+..+++|++|++++|. .....+..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~-~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIK-SV-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ--LQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTS-CCC-CC-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCC-Ccc-cc-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc--cCccChhHhcCCcC
Confidence 4566667776 5555 333 22 245666777777754444 333 356667777777777764 44434444566777
Q ss_pred CcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 91 LECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
|+.|+++++. +..+.. .+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. ++.+++|++|
T Consensus 111 L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGV-FDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEE
T ss_pred CCEEECCCCc-CCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHH-hcCCccCCEE
Confidence 7777777665 555443 3455 667777777777666444444566677777777776665432 333 4566677777
Q ss_pred EeccCCcccceecc-CcccccccceeeccCcCcC
Q 039403 170 HLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 170 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 202 (249)
++++ +.++.++.. +..+++|+.|++++|++.+
T Consensus 187 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 187 RLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCC-CcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 7776 455544433 4566777777777766543
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=7.9e-20 Score=159.69 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
|+++.++.+| ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+|.. .+++|++|++++|. .
T Consensus 59 Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~--l 133 (562)
T 3a79_B 59 LSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND--F 133 (562)
T ss_dssp CCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC--C
T ss_pred CCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC--c
Confidence 4567777777 467888888888 7777 7766667777788888888855555 556655 67788888888875 4
Q ss_pred cc-chhhhhcCCCCCcEEEEecC
Q 039403 78 HS-GVSKSLCELHKLECLKLVNE 99 (249)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~ 99 (249)
.. ..|..+.++++|++|+++++
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECS
T ss_pred cccCchHhhcccCcccEEecCCC
Confidence 33 23467778888888888774
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=167.87 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred cccc-chhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcchh--cCCCcccCeEEEecCcccccc
Q 039403 6 IDQS-PEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPDI--LGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 6 l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~--l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++++ |..+.++++|++| +++| .+.+..|..++.+++|++|++.++. +.++.. +.++++|++|++++|. ...
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~~ 137 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--IRS 137 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--CCC
T ss_pred ccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc--ccc
Confidence 4444 5556667777777 6666 6665566667777777777755544 234443 6677777777777775 433
Q ss_pred ch-hhhhcCCCCCcEEEEecC
Q 039403 80 GV-SKSLCELHKLECLKLVNE 99 (249)
Q Consensus 80 ~~-~~~l~~l~~L~~L~l~~~ 99 (249)
.. +..++++++|+.|+++++
T Consensus 138 ~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 138 LYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCCCGGGGTCSSCCEEEEESS
T ss_pred cccchhHhhCCCCCEEECCCC
Confidence 32 245677777777777764
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.6e-19 Score=148.52 Aligned_cols=204 Identities=15% Similarity=0.212 Sum_probs=148.0
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+|. +..+++|++| +.+| .....++ .+..+++|++|++.++. ..++. +..+++|+.|++++|. ..
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l~ 190 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGAN-HNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--IE 190 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTC-TTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--CC
T ss_pred CcCCcccCchh-hccCCceeEEECCCC-CCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--cc
Confidence 45777888877 7888888888 7777 4443333 36777777777755544 33333 5666777777777664 22
Q ss_pred cchhh---------------------hhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 SGVSK---------------------SLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~~~~~---------------------~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
. ++. .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ ...+..+
T Consensus 191 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~-l~~L~~L~l~~n~l~~--~~~~~~l 264 (347)
T 4fmz_A 191 D-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLS-PLAN-LSQLTWLEIGTNQISD--INAVKDL 264 (347)
T ss_dssp C-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTT-CTTCCEEECCSSCCCC--CGGGTTC
T ss_pred c-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCc-chhc-CCCCCEEECCCCccCC--ChhHhcC
Confidence 1 111 14555666666666655 55444 3677 8999999999999874 3678899
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccCcCccE
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRK 216 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 216 (249)
++|+.|++++|.+.+. .. +..+++|+.|++++ +.++ ..+..+..+++|+.|++++|++.+..| +..+++|++
T Consensus 265 ~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI---SV-LNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCCEEECCSSCCCCC---GG-GGGCTTCSEEECCS-SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred CCcCEEEccCCccCCC---hh-hcCCCCCCEEECcC-CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 9999999999988763 34 67889999999999 4565 455667789999999999999776433 788999999
Q ss_pred EEccCCc
Q 039403 217 LDLHWPQ 223 (249)
Q Consensus 217 l~l~~~~ 223 (249)
+++++|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 9999996
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=5.7e-20 Score=147.66 Aligned_cols=190 Identities=20% Similarity=0.132 Sum_probs=160.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++++|..+. ++++.| +++| .+.+..+..+..+++|++|++.++. ..++.. ..+++|+.|++++|. .
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~--l- 89 (290)
T 1p9a_G 17 CDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ--L- 89 (290)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC--C-
T ss_pred CCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc--C-
Confidence 35788999998875 799999 8888 8877777889999999999966666 555544 789999999999995 3
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
..+|..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|.++...+..+..+++|+.|++++|.+..-. ..
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~ 166 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AG 166 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TT
T ss_pred CcCchhhccCCCCCEEECCCCc-CcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HH
Confidence 4677788899999999999988 887765 6788 999999999999998655666789999999999999987532 34
Q ss_pred eCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 158 AGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
. +..+++|++|++++ |.++.+|..+...+.|+.+++++|++..
T Consensus 167 ~-~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 L-LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp T-TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred H-hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCccC
Confidence 4 67789999999999 7899999999889999999999998754
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.9e-19 Score=145.92 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=149.9
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
..++.+. ....+++|++| +.++ .+. .++ .+..+++|++|++.++. ..++. +..+++|+.|++++|. .. .+
T Consensus 29 ~~~~~~~-~~~~l~~L~~L~l~~~-~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~-~~ 100 (308)
T 1h6u_A 29 SNVTDTV-TQADLDGITTLSAFGT-GVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LK-NV 100 (308)
T ss_dssp SSTTSEE-CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CS-CC
T ss_pred CCcCcee-cHHHcCCcCEEEeeCC-Ccc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CC-Cc
Confidence 3444432 35678889999 8777 555 344 57888999999966666 55665 8889999999999885 33 33
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG 161 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 161 (249)
+ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ .+ .+..+++|+.|++++|.+.+. .. +.
T Consensus 101 ~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~---~~-l~ 170 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQ-ITDVT-PLAG-LSNLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQVSDL---TP-LA 170 (308)
T ss_dssp G-GGTTCTTCCEEECTTSC-CCCCG-GGTT-CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCCC---GG-GT
T ss_pred h-hhcCCCCCCEEECCCCC-CCCch-hhcC-CCCCCEEECCCCccCc-Cc-cccCCCCccEEEccCCcCCCC---hh-hc
Confidence 3 58888999999998877 77665 4777 8889999999998874 22 377888999999998887652 23 66
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++|+.|++++ +.+++++. +..+++|++|++++|.+.+ ++ .+..+++|+++++++|+
T Consensus 171 ~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCC-CccCcChh-hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCe
Confidence 788899999998 67776665 6778889999999998764 44 37788999999998885
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=6.8e-20 Score=163.42 Aligned_cols=146 Identities=19% Similarity=0.160 Sum_probs=85.4
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.+|. .+.++++|++| +++| .+.+..|..++.+++|++|++.++. ..+|+ .++++++|++|++++|.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-- 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-- 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc--
Confidence 34566666665 36777777777 6666 6665566666667777777755444 44554 46667777777777764
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc--cCCCCCceEEeeccccC
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML--ERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~ 151 (249)
.....+..++++++|++|+++++. +..... .+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+.
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred cCccChhHccccCCCCEEECCCCc-ccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 433334556667777777776654 444332 3445 5666666666665553333322 23355555555555443
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=158.12 Aligned_cols=117 Identities=19% Similarity=0.098 Sum_probs=94.9
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. ++|++| +++| .+.+..|..+..+++|++|++.++. .. .|..+.++++|++|++++|. .
T Consensus 7 ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l 81 (520)
T 2z7x_B 7 RSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK--L 81 (520)
T ss_dssp CTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC--C
T ss_pred cCCCCccccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc--e
Confidence 57899999999887 899999 9998 8886667789999999999977666 44 46789999999999999995 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~ 127 (249)
. .+|.. .+++|++|+++++. +..+.+ .+.. +++|++|++++|.+.
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~-l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNA-FDALPICKEFGN-MSQLKFLGLSTTHLE 128 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSC-CSSCCCCGGGGG-CTTCCEEEEEESSCC
T ss_pred e-ecCcc--ccCCccEEeccCCc-cccccchhhhcc-CCcceEEEecCcccc
Confidence 4 56655 89999999999977 665432 5666 777777777777654
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=4.6e-21 Score=155.63 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=156.5
Q ss_pred CCCccccchhhhhcccccee-eecCccc-CCCCCCcCC-------CCccccccccccCC--CCcchhc--CCCcccCeEE
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITL-PAPPKNYFS-------SLKNLIFISALHPS--SCTPDIL--GRLPSVQTLR 69 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~-~~~~~~~~~-------~l~~L~~L~l~~~~--~~~~~~l--~~l~~L~~L~ 69 (249)
++.+ ++|..+... |+.| +..+ .+ ...++..+. .+++|++|++.++. +..|..+ ..+++|++|+
T Consensus 52 ~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 127 (312)
T 1wwl_A 52 VDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127 (312)
T ss_dssp CCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE
T ss_pred cccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE
Confidence 4556 678887766 8888 7777 66 445666555 68999999977666 4677765 7899999999
Q ss_pred EecCccccccchhhhhcCC-----CCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC--Ccccc--cCCCC
Q 039403 70 ISGNLSCYHSGVSKSLCEL-----HKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED--PMPML--ERLPR 139 (249)
Q Consensus 70 l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~ 139 (249)
+++|. ..+. |..+..+ ++|++|+++++. +..+.. .+.. +++|+.|++++|.+.+. .+..+ ..+++
T Consensus 128 Ls~N~--l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 128 LRNVS--WATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV-FPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp EESCB--CSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC-CSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccCCC--Ccch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc-CCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 99996 5444 6666655 899999999987 777664 6777 89999999999987643 23344 78899
Q ss_pred CceEEeeccccCCc--eeeeeCCCCCCcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCccccccCcCcc
Q 039403 140 LQVLKLKRNSYLGR--KLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLPEELWCIKSLR 215 (249)
Q Consensus 140 L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 215 (249)
|++|++++|.+.+. ..... +..+++|++|++++ |.++..+ ..+..+++|+.|++++|.+. .+|..+. ++|+
T Consensus 203 L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 203 LQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp CCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 99999999988742 11122 34678999999999 6676533 34456789999999999976 7887766 8999
Q ss_pred EEEccCCc
Q 039403 216 KLDLHWPQ 223 (249)
Q Consensus 216 ~l~l~~~~ 223 (249)
+|++++|.
T Consensus 278 ~L~Ls~N~ 285 (312)
T 1wwl_A 278 VLDLSYNR 285 (312)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99999995
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=157.02 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=107.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCcccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++++.++++|..+. +++++| +++| .+.+..+..++.+++|++|++.++. ..+ |..+.++++|++|++++|. .
T Consensus 38 ls~~~L~~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l 112 (562)
T 3a79_B 38 YSNRNLTHVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR--L 112 (562)
T ss_dssp CTTSCCCSCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred cCCCCCccCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc--C
Confidence 46789999998875 899999 9998 8887777889999999999966666 444 6678999999999999995 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
. .+|.. .+++|++|+++++. +..++. .+.. +++|++|++++|.+++.....+..+ +|+.|++.+|.+
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFND-FDVLPVCKEFGN-LTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSC-CSBCCCCGGGGG-CTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred C-ccCcc--ccccCCEEECCCCC-ccccCchHhhcc-cCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 3 56655 89999999999988 777653 6777 8889999998888764333333333 236666665544
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=9.5e-20 Score=162.50 Aligned_cols=206 Identities=18% Similarity=0.141 Sum_probs=103.0
Q ss_pred hhhhcccccee-eecCcccCCCCC-CcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccccccchhhhhcC
Q 039403 12 DIWMMQKLMHL-NFGCITLPAPPK-NYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCE 87 (249)
Q Consensus 12 ~i~~l~~L~~L-l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 87 (249)
.+..+++|+.| ++.| .+.+.++ ..+..+++|++|++.++. ...+..+..+++|+.|++++|.-...+..|..+..
T Consensus 400 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 44555555555 4444 4433333 344455555555533333 22333444555555555555430011234445555
Q ss_pred CCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCC--------CcccccCCCCCceEEeeccccCCceeeee
Q 039403 88 LHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMED--------PMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 88 l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
+++|+.|+++++. +..+.. .+.. +++|++|++++|.+++. .+..+..+++|+.|++++|.+.. .....
T Consensus 479 l~~L~~L~Ls~N~-l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~ 555 (680)
T 1ziw_A 479 LRNLTILDLSNNN-IANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEV 555 (680)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred CCCCCEEECCCCC-CCcCChhhhcc-ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHH
Confidence 5666666665554 554443 3445 55666666666655421 11124555666666666665542 21223
Q ss_pred CCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCCccccc-cCcCccEEEccCCc
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKLPEELW-CIKSLRKLDLHWPQ 223 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~l~l~~~~ 223 (249)
+..+++|+.|++++ |.++.++.. +..+++|+.|++++|.+.+..+..+. .+++|+.+++++|+
T Consensus 556 -~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 556 -FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred -cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 45566666666665 455555544 24556666666666665543333343 45666666666654
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1e-19 Score=158.34 Aligned_cols=212 Identities=16% Similarity=0.069 Sum_probs=165.7
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|+.+. ++|++| +++| .+.+..|..++.+++|++|++.++. ..+ +..+.++++|++|++++|. ..
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~ 87 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LS 87 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CC
T ss_pred CCCccccccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc--cC
Confidence 5678999999775 799999 9988 7877778889999999999976666 444 4678899999999999996 66
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCc-ccccCCCCCceEEeeccccCCcee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRLQVLKLKRNSYLGRKL 155 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 155 (249)
+..+..++.+++|++|+++++. +..+.. .+.. +++|+.|++++|...+..+ ..+..+++|++|++++|.+.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 164 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ- 164 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred ccCHHHhccCCCCcEEECCCCc-ccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-
Confidence 6666779999999999999977 765432 6778 8999999999998544444 57888999999999999887654
Q ss_pred eeeCCCCCCcccEEEeccCCcccceeccC-cccccccceeeccCcCcCCC--c-cccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTMGA-GALPKLESLIVNPCAYLRKL--P-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~l--~-~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ++.+++|++|+++. +.+..++..+ ..+++|+.|++++|.+.+.. + .....++.|+.+++++|.
T Consensus 165 ~~~-l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 165 SQS-LKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TTT-TTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred hhh-hhccccCceEeccc-CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 556 78889999999998 5566555543 35788999999999876521 1 122346777777777774
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=163.91 Aligned_cols=95 Identities=22% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCcccc-chhhhhcccccee-eecCcccCCCC-CCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCcccc
Q 039403 3 SSYIDQS-PEDIWMMQKLMHL-NFGCITLPAPP-KNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L-l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
++.++.+ |..+..+++|+.| +++| ...+.+ |..++++++|++|++.++. . ..|..++++++|++|++++|. .
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~--l 109 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG--L 109 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC--C
T ss_pred CCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC--C
Confidence 3444444 3344555555555 4444 222233 3444455555555533333 2 224444455555555555543 3
Q ss_pred ccchhhh--hcCCCCCcEEEEecCC
Q 039403 78 HSGVSKS--LCELHKLECLKLVNES 100 (249)
Q Consensus 78 ~~~~~~~--l~~l~~L~~L~l~~~~ 100 (249)
.+..+.. +.++++|++|+++++.
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CcccccCccccccCCCCEEECCCCc
Confidence 3322222 4445555555555433
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=8.8e-19 Score=149.28 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=99.5
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .++.+++|++| +++| .+.+ ++ ++.+++|++|++.++. ..++ ++++++|++|++++|. ..
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~--l~ 119 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTSN-NITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK--LT 119 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCSS-CCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC--CS
T ss_pred ccCCCcccCh-hhcccCCCCEEEccCC-cCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc--CC
Confidence 4567777776 67888888888 7777 6654 33 6778888888855555 4443 6778888888888875 33
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcc----------------------cCCCCCcccccC
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNT----------------------ELMEDPMPMLER 136 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~----------------------~~~~~~~~~~~~ 136 (249)
+ ++ +..+++|+.|+++++. ++.++ +.. +++|+.|+++.| .+++ .+ ++.
T Consensus 120 ~-l~--~~~l~~L~~L~l~~N~-l~~l~--l~~-l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 120 K-LD--VSQNPLLTYLNCARNT-LTEID--VSH-NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp C-CC--CTTCTTCCEEECTTSC-CSCCC--CTT-CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred e-ec--CCCCCcCCEEECCCCc-cceec--ccc-CCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--ccc
Confidence 3 33 6677778888777755 55442 333 444444444444 4432 11 334
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
+++|+.|++++|.+.+. . ++.+++|++|++++ +.++++| +..+++|+.|++++|.+.
T Consensus 190 l~~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL----D-LNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CTTCCEEECCSSCCSCC----C-CTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred CCCCCEEECcCCcCCee----c-cccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeCCcCC
Confidence 44444444444444331 1 33445555555555 3444443 444455555555555543
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=5.2e-20 Score=160.24 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=109.6
Q ss_pred CCCCCccccc-hhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSP-EDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp-~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~ 76 (249)
|+++.++.++ ..+..+++|++| +++| .+.+..|..++.+++|++|++.++. ..+++ .++++++|++|++++|.
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-- 109 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-- 109 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC--
T ss_pred CcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc--
Confidence 4678888884 579999999999 8888 8887777889999999999966666 54544 58999999999999986
Q ss_pred ccc-chhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCccccc-------------------
Q 039403 77 YHS-GVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLE------------------- 135 (249)
Q Consensus 77 ~~~-~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------- 135 (249)
... ..+..+.++++|+.|+++++..+..++. .+.. +++|++|++++|.+++..+..++
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 443 3456788899999999988642444432 5666 77788888887777654444443
Q ss_pred -----CCCCCceEEeeccccCC
Q 039403 136 -----RLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 136 -----~l~~L~~L~l~~~~~~~ 152 (249)
.+++|++|++++|.+.+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhHhhcccccEEEccCCcccc
Confidence 35667777777766654
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=6.6e-19 Score=150.52 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.+++|+.|++++ +.++.++. +..+++|+.|++++|.+.+ ++. +..+++|+++++++|.
T Consensus 263 ~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 263 GLTKLTELKLGA-NQISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp TCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSC
T ss_pred cCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCc
Confidence 344444444444 33333333 3444555555555555432 222 4455566666666553
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=3.7e-19 Score=138.93 Aligned_cols=203 Identities=19% Similarity=0.137 Sum_probs=147.1
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEEEec-Cccccccc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLRISG-NLSCYHSG 80 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~l~~-~~~~~~~~ 80 (249)
++++|. +. +++++| +.+| .+.+..+..++.+++|++|++.++. ..++. .+.++++|++|++++ |. ....
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEE
T ss_pred ccccCC-CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEc
Confidence 677887 43 488888 8887 7765555578888999999976663 44554 677888999999987 64 4443
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCcc---EEEEEcc-cCCCCCcccccCCCCCc-eEEeeccccCCcee
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLI---QLSLSNT-ELMEDPMPMLERLPRLQ-VLKLKRNSYLGRKL 155 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~ 155 (249)
.+..+..+++|+.|+++++. +..++ .+.. +++|+ .|++++| .++...+..+..+++|+ .|++++|.+. ..
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp-~~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i- 171 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFP-DLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV- 171 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCC-CCTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE-
T ss_pred CHHHhCCCCCCCEEeCCCCC-Ccccc-cccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc-
Confidence 34567888899999998877 77655 3666 77777 8999998 77644445678888898 9999888876 33
Q ss_pred eeeCCCCCCcccEEEeccCCcccceec-cCccc-ccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 156 ACAGSGGFPELKVLHLKSMYWLDEWTM-GAGAL-PKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ....++|+.|++++|..++.++. .+..+ ++|+.|++++|.+. .+|.. .++.|+.|+++++.
T Consensus 172 ~~~-~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 QGY-AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTT-TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CHh-hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 322 22337899999988435777754 45677 88999999998875 45654 67888888888764
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=158.94 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=158.4
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhc--------------------CCCc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDIL--------------------GRLP 63 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l--------------------~~l~ 63 (249)
.+.+|..+..+++|++| +.++ .+. .+|..+..+ +|++|++.++. ..+|... ..++
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhchhhhcCcCcccEEEecCc-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 35578889999999999 8888 776 688888888 99999866655 5444311 3445
Q ss_pred ccCeEEEecCccccccc--hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCc-ccccCCCCC
Q 039403 64 SVQTLRISGNLSCYHSG--VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPM-PMLERLPRL 140 (249)
Q Consensus 64 ~L~~L~l~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 140 (249)
+|+.|++++|. .... .+..+..+++|+.|+++++. +..+...+.. +++|+.|++++|.+.+..+ ..+..+++|
T Consensus 348 ~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 348 SLEFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TCCEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEET-CTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCEEeCcCCc--cCccccccccccccCccCEEECCCCc-cccccccccc-cCCCCEEEccCCccccccchhhhhcCCCC
Confidence 56666666554 3222 24566677777777777766 6666556777 8889999999988875444 467888999
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCCCccccccCcCccEEE
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLD 218 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~ 218 (249)
+.|++++|.+.+.. +.. +..+++|++|++++ +.++ .+|..+..+++|+.|++++|.+.+..|..+..+++|++++
T Consensus 424 ~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 424 IYLDISHTHTRVAF-NGI-FNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp CEEECTTSCCEECC-TTT-TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEeCcCCcccccc-hhh-hhcCCcCcEEECcC-CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 99999988876544 555 77899999999999 4554 5888888999999999999998876688889999999999
Q ss_pred ccCCc
Q 039403 219 LHWPQ 223 (249)
Q Consensus 219 l~~~~ 223 (249)
+++|.
T Consensus 501 l~~n~ 505 (570)
T 2z63_A 501 MASNQ 505 (570)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99995
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=8.4e-20 Score=145.60 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=155.6
Q ss_pred CCCCCccccch-hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPE-DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~-~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++.+|. .+..+++|++| +++| .+.+..+..++.+++|++|++.++. ..++ ..+.++++|++|++++|.
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 111 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-- 111 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC--
T ss_pred CCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC--
Confidence 46889999988 79999999999 9888 8876666688999999999966666 4444 678899999999999996
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCceeee--ecCCCCCCCccEEEEEcccCCCCCcccccCCCCCc----eEEeecccc
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSRMV--LSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ----VLKLKRNSY 150 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~ 150 (249)
.....+..+..+++|+.|+++++. +..+. ..+.. +++|+.|++++|.+++..+..+..+++++ .|++++|.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred ccccCchhcccCCCCCEEECcCCc-cceecCchhhcc-CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 554444468899999999999987 77744 37888 99999999999999865555665555555 899999988
Q ss_pred CCceeeeeCCCCCCcccEEEeccCCcccceecc-CcccccccceeeccCcCcCCC
Q 039403 151 LGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAYLRKL 204 (249)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l 204 (249)
.+. +.. .....+|+.|++++ +.++.++.. +..+++|+.|++++|++.+..
T Consensus 190 ~~~--~~~-~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 190 NFI--QPG-AFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEE--CTT-SSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccc--Ccc-ccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcccccC
Confidence 653 222 33445899999999 678877765 478999999999999987643
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=146.45 Aligned_cols=196 Identities=16% Similarity=0.091 Sum_probs=156.1
Q ss_pred hcccccee-eecCcccCCCCCCcC--CCCccccccccccCC-C-Ccc----hhcCCCcccCeEEEecCccccccchhhhh
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYF--SSLKNLIFISALHPS-S-CTP----DILGRLPSVQTLRISGNLSCYHSGVSKSL 85 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~-~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (249)
.+++|++| +++| .+.+..|..+ +.+++|++|++.++. . ..+ ..+..+++|++|++++|. .....+..+
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHh
Confidence 45779999 9888 8888888888 899999999976666 3 222 344579999999999997 666667788
Q ss_pred cCCCCCcEEEEecCCCcee---eee--cCCCCCCCccEEEEEcccCCCCCcc----cccCCCCCceEEeeccccCCceee
Q 039403 86 CELHKLECLKLVNESKLSR---MVL--SEYQFPPSLIQLSLSNTELMEDPMP----MLERLPRLQVLKLKRNSYLGRKLA 156 (249)
Q Consensus 86 ~~l~~L~~L~l~~~~~L~~---l~l--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~ 156 (249)
..+++|++|+++++. +.. +.. .+.. +++|++|++++|.++ ..+. .+..+++|++|++++|.+.+.. +
T Consensus 166 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p 241 (310)
T 4glp_A 166 RAFPALTSLDLSDNP-GLGERGLMAALCPHK-FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATV-N 241 (310)
T ss_dssp CCCTTCCEEECCSCT-TCHHHHHHTTSCTTS-SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCC-C
T ss_pred ccCCCCCEEECCCCC-CccchhhhHHHhhhc-CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccc-h
Confidence 999999999999976 533 221 3467 889999999999986 3333 2467899999999999998754 4
Q ss_pred eeCCCCC---CcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 157 CAGSGGF---PELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 157 ~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.. +..+ ++|++|++++ |.++.+|..+. ++|+.|++++|.+.+ +|. +..+++|+.+++++|+
T Consensus 242 ~~-~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PS-APRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SC-CSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTT
T ss_pred hh-HHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCC
Confidence 33 4444 7999999999 78888887764 899999999999875 444 5788999999999996
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=8e-20 Score=148.64 Aligned_cols=179 Identities=17% Similarity=0.102 Sum_probs=135.1
Q ss_pred CcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeee------
Q 039403 35 NYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMV------ 106 (249)
Q Consensus 35 ~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~------ 106 (249)
..+..+++|++|++.++. .. .+..+.++++|+.|++++|. ..+..+ +..+++|+.|+++++. ++.+.
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEEE--ETTCTTCCEEECCSSE-EEEEEECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcchh--hhhcCCCCEEECcCCc-cccccCCCCcC
Confidence 334567899999977766 44 45689999999999999996 544333 8889999999999865 44433
Q ss_pred ---e--------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCC
Q 039403 107 ---L--------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175 (249)
Q Consensus 107 ---l--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (249)
+ .... +++|+.|++++|.+++..+..+..+++|++|++++|.+.+.. +......+++|++|++++ +
T Consensus 103 ~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~-N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQY-N 179 (317)
T ss_dssp EEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTT-S
T ss_pred EEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCC-C
Confidence 2 2234 667888888888887555567778889999999988887644 333024678999999998 6
Q ss_pred cccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 176 WLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 176 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.++.++... .+++|+.|++++|.+. .+|..+..+++|+++++++|.
T Consensus 180 ~l~~~~~~~-~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 180 FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CCCEEECCC-CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred cCccccccc-ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence 777775443 4889999999999976 466668889999999999996
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=9.9e-19 Score=149.43 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=121.0
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+++.++.++. +..+++|++| +.+| .+.+..+ ++.+++|++|++.++. ..+ ..+..+++|+.|++++|. ...
T Consensus 185 ~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~--l~~ 257 (466)
T 1o6v_A 185 SSNKVSDISV-LAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ--ISN 257 (466)
T ss_dssp CSSCCCCCGG-GGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC
T ss_pred cCCcCCCChh-hccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCc--ccc
Confidence 3444554432 4555555555 5554 4433222 4455556666644433 322 234556666666666664 322
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
. +. +..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..++.+++|+.|++++|.+.+.. .
T Consensus 258 ~-~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~---~- 326 (466)
T 1o6v_A 258 L-AP-LSGLTKLTELKLGANQ-ISNIS-PLAG-LTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS---P- 326 (466)
T ss_dssp C-GG-GTTCTTCSEEECCSSC-CCCCG-GGTT-CTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG---G-
T ss_pred c-hh-hhcCCCCCEEECCCCc-cCccc-cccC-CCccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCch---h-
Confidence 2 22 5566666666666655 55443 2556 67777777777777632 22667777788888777776533 2
Q ss_pred CCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+..+++|+.|++++ +.+++++ .+..+++|+.|++++|.+.+..| +..+++|+.+++++|.
T Consensus 327 ~~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 44677888888887 4666553 46677888888888888765544 6778888888888875
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.6e-19 Score=155.15 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=135.1
Q ss_pred CCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeee---------
Q 039403 38 SSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMV--------- 106 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~--------- 106 (249)
..+++|++|++.++. . ..|..+..+++|+.|++++|. ..+..+ +..+++|+.|+++++. +..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSE-EEEEEECTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCc-CCCCCCCCCcCEEE
Confidence 345699999977666 4 445689999999999999996 544443 8899999999999865 44433
Q ss_pred e--------cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC-CCCcccEEEeccCCcc
Q 039403 107 L--------SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG-GFPELKVLHLKSMYWL 177 (249)
Q Consensus 107 l--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 177 (249)
+ .... +++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.. +.. +. .+++|++|++++ |.+
T Consensus 106 L~~N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-l~~~l~~L~~L~Ls~-N~l 181 (487)
T 3oja_A 106 AANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAE-LAASSDTLEHLNLQY-NFI 181 (487)
T ss_dssp CCSSCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGG-GGGGTTTCCEEECTT-SCC
T ss_pred CcCCcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHH-HhhhCCcccEEecCC-Ccc
Confidence 2 2233 667888888888888666677888899999999988887654 333 43 678999999999 677
Q ss_pred cceeccCcccccccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 178 DEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 178 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.++.. ..+++|+.|++++|.+.+ +|+.+..++.|+.+++++|.
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred cccccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCc
Confidence 777553 358899999999999765 66668889999999999985
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.3e-20 Score=152.85 Aligned_cols=213 Identities=17% Similarity=0.146 Sum_probs=163.9
Q ss_pred CCCccccchhhhhc--ccccee-eecCcccCCCCCCcCCCCccccccccccCC-C-C-cchhcCCCcccCeEEEecCccc
Q 039403 3 SSYIDQSPEDIWMM--QKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-C-TPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 3 ~~~l~~lp~~i~~l--~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~-~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++.+. |..+..+ ++++.| +.++ .+.+..+. +..+++|++|++.++. . . ++..+..+++|++|++++|.
T Consensus 56 ~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-- 129 (336)
T 2ast_B 56 GKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-- 129 (336)
T ss_dssp TCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--
T ss_pred cccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--
Confidence 44444 5677777 899999 8888 77765554 6789999999966665 3 3 77788999999999999997
Q ss_pred cccchhhhhcCCCCCcEEEEecCCCcee--eeecCCCCCCCccEEEEEcc-cCCCC-CcccccCCC-CCceEEeecc--c
Q 039403 77 YHSGVSKSLCELHKLECLKLVNESKLSR--MVLSEYQFPPSLIQLSLSNT-ELMED-PMPMLERLP-RLQVLKLKRN--S 149 (249)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~--l~l~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~--~ 149 (249)
.....+..+..+++|++|+++++..+.. +...+.. +++|+.|++++| .+++. .+..+..++ +|++|++++| .
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 7777888899999999999999622553 2224667 899999999999 87643 456678899 9999999998 4
Q ss_pred cCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCc-CcCCCccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCA-YLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++...+.. +..+++|++|++++|..++ ..+..+..+++|++|++++|. +.......+..+++|++|++++|-
T Consensus 209 ~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i 283 (336)
T 2ast_B 209 LQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283 (336)
T ss_dssp SCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSS
T ss_pred CCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCcc
Confidence 443333445 6678999999999965465 566678889999999999996 322222357789999999999983
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.2e-18 Score=138.72 Aligned_cols=176 Identities=22% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCCccccccccccCCCCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCc
Q 039403 38 SSLKNLIFISALHPSSCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSL 116 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L 116 (249)
..+++|+.|++.++.-...+.+..+++|++|++++|. ... + ..+..+++|++|+++++. ++.+.. .+.. +++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--LHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDK-LTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--CCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCC--CCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcC-CcCC
Confidence 3455555555333331122234555666666666553 222 2 245555666666666554 544443 2444 5566
Q ss_pred cEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccceee
Q 039403 117 IQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESLIV 195 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 195 (249)
+.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|+.|++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGV-FDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHH-hccCccCCEEECCC-CCcCccCHHHhcCCccCCEEEC
Confidence 66666666555433344555566666666655554322 223 34555666666665 344444433 345556666666
Q ss_pred ccCcCcCCCccccccCcCccEEEccCC
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~ 222 (249)
++|.+.+..+..+..+++|+++++++|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 666655433334455666666666655
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.5e-18 Score=140.58 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=150.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| .+..+++|++| +++| .+.+ ++. ++.+++|++|++.++. ..++ .+..+++|+.|++++|. ..
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~--l~ 120 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKDN-QITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ--IT 120 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSS-CCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC--CC
T ss_pred eeCCCccCch-hhhccCCCCEEEccCC-cCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC--CC
Confidence 4678899998 68999999999 9888 7764 444 8999999999966666 5554 68899999999999996 43
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
. ++. +..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ .+. +..+++|+.|++++|.+.+.. .
T Consensus 121 ~-~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~---~ 190 (308)
T 1h6u_A 121 D-VTP-LAGLSNLQVLYLDLNQ-ITNIS-PLAG-LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS---P 190 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSC-CCCCG-GGGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG---G
T ss_pred C-chh-hcCCCCCCEEECCCCc-cCcCc-cccC-CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh---h
Confidence 3 443 8899999999999987 77665 3777 8999999999999974 333 889999999999999987632 3
Q ss_pred CCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+..+++|++|++++ +.++.++. +..+++|+.|++++|++.+
T Consensus 191 -l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 -LASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCCeeec
Confidence 56789999999999 67887774 7889999999999999764
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=3.3e-18 Score=134.50 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=94.4
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECL 94 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (249)
..+++ ..++ .+. .+|..+. ++++.|++.++. . ..+..+.++++|++|++++|. .....+..+..+++|+.|
T Consensus 15 ~~~~l~~~~~-~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGK-SLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTC-CCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCC-Ccc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEE
Confidence 34455 4444 333 4554443 466666644444 2 233356666677777776665 444444455666666666
Q ss_pred EEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 95 KLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 95 ~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++
T Consensus 89 ~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 89 GLANNQ-LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGA-FDKLTNLQTLSLST 164 (251)
T ss_dssp ECTTSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS
T ss_pred ECCCCc-ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHH-cCcCcCCCEEECCC
Confidence 666655 554443 3445 566666666666665333334455666666666666554322 223 45556666666666
Q ss_pred CCcccceec-cCcccccccceeeccCcCcC
Q 039403 174 MYWLDEWTM-GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 174 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 202 (249)
|.++.++. .+..+++|+.|++++|++..
T Consensus 165 -N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 165 -NQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -CcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 45554443 34455666666666666544
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=7.4e-18 Score=143.59 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=132.7
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| ++.+++|++| +++| .+.+ ++ ++.+++|++|++.++. ..++ ++++++|+.|++++|. ..
T Consensus 71 Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~--l~ 140 (457)
T 3bz5_A 71 CTSNNITTLD--LSQNTNLTYLACDSN-KLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT--LT 140 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCSEEECCSS-CCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC--CS
T ss_pred ccCCcCCeEc--cccCCCCCEEECcCC-CCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc--cc
Confidence 3566666665 6677777777 6666 5553 22 5666677777644444 4343 5566666666666664 22
Q ss_pred c---------------------chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 79 S---------------------GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 79 ~---------------------~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+ .+ .+..+++|+.|+++++. ++.++ +.. +++|+.|++++|.+++. .++.+
T Consensus 141 ~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~-l~~L~~L~l~~N~l~~~---~l~~l 211 (457)
T 3bz5_A 141 EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQ-NKLLNRLNCDTNNITKL---DLNQN 211 (457)
T ss_dssp CCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTT-CTTCCEEECCSSCCSCC---CCTTC
T ss_pred eeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--ccc-CCCCCEEECcCCcCCee---ccccC
Confidence 2 11 23445556666665555 55543 667 88999999999999853 47889
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc----------cccceeeccCcCcCCCccc
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP----------KLESLIVNPCAYLRKLPEE 207 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~L~~L~l~~~~~~~~l~~~ 207 (249)
++|+.|++++|.+.+ . + ++.+++|+.|++++ +.++.++ ...++ +|+.+++++|...+.+|
T Consensus 212 ~~L~~L~Ls~N~l~~-i-p---~~~l~~L~~L~l~~-N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-I-D---VTPLTQLTYFDCSV-NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp TTCSEEECCSSCCSC-C-C---CTTCTTCSEEECCS-SCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred CCCCEEECcCCcccc-c-C---ccccCCCCEEEeeC-CcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 999999999999887 2 2 56889999999999 6777665 23344 45667777777666665
Q ss_pred cccCcCccEEEccCCc
Q 039403 208 LWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 208 l~~l~~L~~l~l~~~~ 223 (249)
.+.+++|+.+++++|.
T Consensus 282 ~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CTTCTTCCCCCCTTCT
T ss_pred ccccccCCEEECCCCc
Confidence 4678999999999996
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=5.4e-18 Score=149.55 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCCCcccEEEeccCCccccee-ccCcccccccceeeccCcCcCCCccccccC-cCccEEEccCC
Q 039403 160 SGGFPELKVLHLKSMYWLDEWT-MGAGALPKLESLIVNPCAYLRKLPEELWCI-KSLRKLDLHWP 222 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l-~~L~~l~l~~~ 222 (249)
+..+++|++|++++ |.++.++ ..+..+++|+.|++++|.+.+..|..+..+ ++|+.+++++|
T Consensus 514 f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 514 FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 44445555555555 3444332 233445555555555555554444455554 45666666654
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=3.3e-20 Score=154.86 Aligned_cols=214 Identities=19% Similarity=0.181 Sum_probs=128.0
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCC----CCCcCCCCccccccccccCC-----CCcchhc-------CCCccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAP----PKNYFSSLKNLIFISALHPS-----SCTPDIL-------GRLPSV 65 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-----~~~~~~l-------~~l~~L 65 (249)
...+..++..+..+++|++| +++| .+... ++..+..+++|++|++.++. +.+|..+ ..+++|
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 34566788888889999999 8888 77544 33446778888888866653 2344444 678889
Q ss_pred CeEEEecCcccccc----chhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCC---------CCccEEEEEcccCC
Q 039403 66 QTLRISGNLSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFP---------PSLIQLSLSNTELM 127 (249)
Q Consensus 66 ~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~---------~~L~~L~l~~~~~~ 127 (249)
++|++++|. ... .++..+..+++|+.|+++++. +..... .+.. + ++|+.|++++|.++
T Consensus 97 ~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 97 HTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQE-LAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCT
T ss_pred cEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEECCCCCCC
Confidence 999998886 444 366778888888888888865 432111 1212 2 56666666666665
Q ss_pred CC-Cc---ccccCCCCCceEEeeccccCCce----eeeeCCCCCCcccEEEeccCCcc-----cceeccCccccccccee
Q 039403 128 ED-PM---PMLERLPRLQVLKLKRNSYLGRK----LACAGSGGFPELKVLHLKSMYWL-----DEWTMGAGALPKLESLI 194 (249)
Q Consensus 128 ~~-~~---~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ 194 (249)
.. .+ ..+..+++|+.|++++|.+.... .+.. +..+++|++|++++ +.+ ..++..+..+++|+.|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~-n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcC-CCCCcHHHHHHHHHHccCCCcCEEE
Confidence 22 22 23445566666666666554211 1113 44556666666666 334 23444555556666666
Q ss_pred eccCcCcCC----Cccccc--cCcCccEEEccCCc
Q 039403 195 VNPCAYLRK----LPEELW--CIKSLRKLDLHWPQ 223 (249)
Q Consensus 195 l~~~~~~~~----l~~~l~--~l~~L~~l~l~~~~ 223 (249)
+++|.+.+. ++..+. .+++|++|++++|.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 666655432 334442 25566666666654
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2.2e-18 Score=146.75 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=39.1
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccc-------------cccccccCC-CCcchhcCCCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNL-------------IFISALHPS-SCTPDILGRLPSV 65 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~-~~~~~~l~~l~~L 65 (249)
++++.++++|++++++++|++| +++| .+.+.+|.+++.+.+| ++|++.++. ..+|.. .++|
T Consensus 18 l~~n~l~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L 93 (454)
T 1jl5_A 18 RHSSNLTEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHL 93 (454)
T ss_dssp ----------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTC
T ss_pred cccCchhhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCC
Confidence 3578899999999999999999 9988 8888999999988876 677755555 444431 2466
Q ss_pred CeEEEecCc
Q 039403 66 QTLRISGNL 74 (249)
Q Consensus 66 ~~L~l~~~~ 74 (249)
+.|++++|.
T Consensus 94 ~~L~l~~n~ 102 (454)
T 1jl5_A 94 ESLVASCNS 102 (454)
T ss_dssp SEEECCSSC
T ss_pred CEEEccCCc
Confidence 666666664
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=3.7e-20 Score=154.54 Aligned_cols=217 Identities=16% Similarity=0.101 Sum_probs=160.6
Q ss_pred CCCCCccc-----cchhhhhcccccee-eecC--cccCCCCCCcC-------CCCccccccccccCC-CC-----cchhc
Q 039403 1 MPSSYIDQ-----SPEDIWMMQKLMHL-NFGC--ITLPAPPKNYF-------SSLKNLIFISALHPS-SC-----TPDIL 59 (249)
Q Consensus 1 l~~~~l~~-----lp~~i~~l~~L~~L-l~~~--~~~~~~~~~~~-------~~l~~L~~L~l~~~~-~~-----~~~~l 59 (249)
|+++.++. ++..+..+++|++| +++| +.+.+.+|..+ ..+++|++|++.++. +. ++..+
T Consensus 39 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 118 (386)
T 2ca6_A 39 LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118 (386)
T ss_dssp CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHH
Confidence 34555554 45567789999999 8886 24444556554 688999999966666 33 67788
Q ss_pred CCCcccCeEEEecCccccccc----hhhhhcCC---------CCCcEEEEecCCCceeeee-----cCCCCCCCccEEEE
Q 039403 60 GRLPSVQTLRISGNLSCYHSG----VSKSLCEL---------HKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSL 121 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l 121 (249)
..+++|+.|++++|. .... ++..+..+ ++|+.|+++++. +....+ .+.. +++|+.|++
T Consensus 119 ~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-~~~L~~L~L 194 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQS-HRLLHTVKM 194 (386)
T ss_dssp HHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHH-CTTCCEEEC
T ss_pred HhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHh-CCCcCEEEC
Confidence 899999999999996 5432 33444455 899999999976 542111 4556 889999999
Q ss_pred EcccCCCC----Ccc-cccCCCCCceEEeeccccCCc---eeeeeCCCCCCcccEEEeccCCcccc-----eeccC--cc
Q 039403 122 SNTELMED----PMP-MLERLPRLQVLKLKRNSYLGR---KLACAGSGGFPELKVLHLKSMYWLDE-----WTMGA--GA 186 (249)
Q Consensus 122 ~~~~~~~~----~~~-~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~--~~ 186 (249)
++|.++.. ..+ .+..+++|+.|++++|.++.. .++.. +..+++|++|++++ +.++. ++..+ +.
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLND-CLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTT-CCCCHHHHHHHHHHHHTCS
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCC-CCCchhhHHHHHHHHhhcc
Confidence 99988632 223 778899999999999988521 12445 67889999999999 55652 35555 34
Q ss_pred cccccceeeccCcCcC----CCcccc-ccCcCccEEEccCCc
Q 039403 187 LPKLESLIVNPCAYLR----KLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~----~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.+.+ .+|..+ ..+++|++|++++|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8999999999999876 477777 568999999999995
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=4.3e-20 Score=151.17 Aligned_cols=213 Identities=19% Similarity=0.208 Sum_probs=160.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCC-CCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEEecCccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAP-PKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++++.++..+..+..+++|++| +++| .+.+. ++..+..+++|++|++.++. +..+..+..+++|++|++++|..
T Consensus 77 l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~- 154 (336)
T 2ast_B 77 CPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG- 154 (336)
T ss_dssp CTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-
T ss_pred cCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC-
Confidence 4577788888888899999999 9888 67654 77778899999999976666 45777888999999999999840
Q ss_pred ccc-chhhhhcCCCCCcEEEEecC-CCceee--eecCCCCCC-CccEEEEEcc--cCC-CCCcccccCCCCCceEEeecc
Q 039403 77 YHS-GVSKSLCELHKLECLKLVNE-SKLSRM--VLSEYQFPP-SLIQLSLSNT--ELM-EDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 77 ~~~-~~~~~l~~l~~L~~L~l~~~-~~L~~l--~l~~~~~~~-~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~ 148 (249)
... .++..+..+++|++|+++++ . +... ...+.. ++ +|+.|++++| .++ ...+..+..+++|+.|++++|
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 333 46777889999999999997 5 6642 224666 88 9999999999 454 245566778999999999999
Q ss_pred c-cCCceeeeeCCCCCCcccEEEeccCCccc-ceeccCcccccccceeeccCcCcCCCccccccC-cCccEEEccCCc
Q 039403 149 S-YLGRKLACAGSGGFPELKVLHLKSMYWLD-EWTMGAGALPKLESLIVNPCAYLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
. +++.. +.. +..+++|++|++++|..+. .....+..+++|+.|++++| +... .+..+ ..+..+++++|.
T Consensus 233 ~~l~~~~-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 233 VMLKNDC-FQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCCGGG-GGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CcCCHHH-HHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 8 55544 445 7788999999999975444 22335678999999999999 4432 22223 235556677764
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.4e-17 Score=130.88 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=139.3
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CC-cchhcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SC-TPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+. ++++.| +.+| .+.+..+..++.+++|++|++.++. .. .+..+.++++|+.|++++|. ..
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 96 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--LA 96 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CC
T ss_pred CCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc--cc
Confidence 5788999998876 699999 8888 8887777889999999999966666 44 44557899999999999996 65
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~ 173 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HG 173 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TT
T ss_pred ccChhHhcccCCCCEEEcCCCc-CCCcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HH
Confidence 5555678899999999999988 887765 4677 899999999999998655567899999999999999987643 44
Q ss_pred eCCCCCCcccEEEeccCCccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~ 178 (249)
. +..+++|+.|++++ |.+.
T Consensus 174 ~-~~~l~~L~~L~l~~-N~~~ 192 (251)
T 3m19_A 174 A-FDRLGKLQTITLFG-NQFD 192 (251)
T ss_dssp T-TTTCTTCCEEECCS-CCBC
T ss_pred H-HhCCCCCCEEEeeC-Ccee
Confidence 5 77899999999999 4443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=2.6e-17 Score=128.38 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEEec-CCCceee
Q 039403 30 PAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKLVN-ESKLSRM 105 (249)
Q Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~L~~l 105 (249)
...+|. +. .+|++|++.++. ..++. .+.++++|+.|++++|. ....++ ..+..+++|+.|++++ +. ++.+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHIEIRNTRN-LTYI 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS--SCCEECTTTEESCTTCCEEEEEEETT-CCEE
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC--CcceeCHhHcCCCcCCcEEECCCCCC-eeEc
Confidence 446776 43 489999966666 65655 68899999999999994 355554 4788999999999998 77 8887
Q ss_pred ee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCc---eEEeecc-ccCCceeeeeCCCCCCccc-EEEeccCCcccc
Q 039403 106 VL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ---VLKLKRN-SYLGRKLACAGSGGFPELK-VLHLKSMYWLDE 179 (249)
Q Consensus 106 ~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~ 179 (249)
.. .+.. +++|+.|++++|.+++ .|. +..+++|+ .|++++| .+.+-. +.. +..+++|+ .|++++ +.++.
T Consensus 97 ~~~~f~~-l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~-~~~l~~L~~~L~l~~-n~l~~ 170 (239)
T 2xwt_C 97 DPDALKE-LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNA-FQGLCNETLTLKLYN-NGFTS 170 (239)
T ss_dssp CTTSEEC-CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTT-TTTTBSSEEEEECCS-CCCCE
T ss_pred CHHHhCC-CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-ccc-ccchhcceeEEEcCC-CCCcc
Confidence 75 6778 9999999999999974 554 88888888 9999999 665422 445 77899999 999999 78888
Q ss_pred eeccCcccccccceeeccCc-CcCCCccccccC-cCccEEEccCCc
Q 039403 180 WTMGAGALPKLESLIVNPCA-YLRKLPEELWCI-KSLRKLDLHWPQ 223 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~~~-~~~~l~~~l~~l-~~L~~l~l~~~~ 223 (249)
++......++|+.|++++|+ +...-+..+..+ ++|+++++++|.
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 88766555899999999996 664334567788 999999999985
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=3.6e-18 Score=138.41 Aligned_cols=189 Identities=17% Similarity=0.101 Sum_probs=147.1
Q ss_pred CCCCcc-ccchhh--hhcccccee-eecCcccCCCCC----CcCCCCccccccccccCC-C-CcchhcCCCcccCeEEEe
Q 039403 2 PSSYID-QSPEDI--WMMQKLMHL-NFGCITLPAPPK----NYFSSLKNLIFISALHPS-S-CTPDILGRLPSVQTLRIS 71 (249)
Q Consensus 2 ~~~~l~-~lp~~i--~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~ 71 (249)
+++.++ ..|..+ ..+++|++| +++| .+.+..+ ..+..+++|++|++.++. . ..+..++.+++|++|+++
T Consensus 99 ~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 99 EDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp ESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred eCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 456665 556666 899999999 9998 7776544 344579999999976666 4 445678899999999999
Q ss_pred cCccccccc--hh--hhhcCCCCCcEEEEecCCCceeeee----cCCCCCCCccEEEEEcccCCCCCcccccCC---CCC
Q 039403 72 GNLSCYHSG--VS--KSLCELHKLECLKLVNESKLSRMVL----SEYQFPPSLIQLSLSNTELMEDPMPMLERL---PRL 140 (249)
Q Consensus 72 ~~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~L~~l~l----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L 140 (249)
+|. ..+. ++ ..+..+++|++|+++++. ++.+.. .+.. +++|++|++++|.+++..|..+..+ ++|
T Consensus 178 ~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 178 DNP--GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp SCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred CCC--CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence 996 4332 32 234689999999999987 765443 2356 7899999999999987667777776 699
Q ss_pred ceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 141 QVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
++|++++|.+.. . +.. + +++|++|++++ |.++.+|. ...+++|+.|++++|+++.
T Consensus 254 ~~L~Ls~N~l~~-l-p~~-~--~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLEQ-V-PKG-L--PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCCS-C-CSC-C--CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCCc-h-hhh-h--cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 999999999873 3 444 3 48999999999 78887765 6788999999999999764
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=4.3e-17 Score=123.51 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=124.6
Q ss_pred CCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 60 GRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..+++|+.|++++|. .. .++ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++..+..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~--i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANIN--VT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSC--CS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCC--cc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhc-CCCCCEEEeECCccCcccChhhcCCCC
Confidence 567888999998885 33 455 58888999999998875 66554 6777 899999999999988667888899999
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCcCccEEEc
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKLDL 219 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l 219 (249)
|++|++++|.+.+.. +.. +..+++|++|++++|..++.++ .+..+++|+.|++++|.+.+ ++ .+..+++|+++++
T Consensus 114 L~~L~Ls~n~i~~~~-~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 114 LTLLDISHSAHDDSI-LTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CCEEECCSSBCBGGG-HHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCEEEecCCccCcHh-HHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 999999999887655 556 7789999999999954478777 57889999999999999764 55 6788999999999
Q ss_pred cCCc
Q 039403 220 HWPQ 223 (249)
Q Consensus 220 ~~~~ 223 (249)
++|.
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 9996
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.9e-17 Score=131.22 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=133.3
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
..++.++ ....+++|+.| +.+| .+. .++ .++.+++|++|++.++. ..++. +.++++|+.|++++|. . ..+
T Consensus 34 ~~~~~~~-~~~~l~~L~~L~l~~~-~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--l-~~~ 105 (291)
T 1h6t_A 34 KSVTDAV-TQNELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--V-KDL 105 (291)
T ss_dssp SCTTSEE-CHHHHHTCCEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C-CCG
T ss_pred CCccccc-chhhcCcccEEEccCC-Ccc-cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--C-CCC
Confidence 3444433 24678888888 7777 554 343 47788899999866666 55555 7888999999998885 3 334
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCC
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSG 161 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 161 (249)
+ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.. . +.
T Consensus 106 ~-~l~~l~~L~~L~L~~n~-i~~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~-l~ 175 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNG-ISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---P-LA 175 (291)
T ss_dssp G-GGTTCTTCCEEECTTSC-CCCCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---G-GT
T ss_pred h-hhccCCCCCEEECCCCc-CCCCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch---h-hc
Confidence 3 48888899999998877 76654 5667 88899999999888742 67788888999999888876632 3 56
Q ss_pred CCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 162 GFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+++|+.|++++ +.++.++. +..+++|+.|++++|++..
T Consensus 176 ~l~~L~~L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSK-NHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCS-SCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCC-CcCCCChh-hccCCCCCEEECcCCcccC
Confidence 788899999988 67777764 6778889999998888654
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=8.9e-17 Score=136.81 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++.+| +++.+++|++| +++| .+.+ +|..+ .+|++|++.++. ..+| .++++++|+.|++++|. ..
T Consensus 138 L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~--l~ 208 (454)
T 1jl5_A 138 VSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS--LK 208 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSS-CCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CS
T ss_pred CcCCCCCCCc-ccCCCCCCCEEECCCC-cCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc--CC
Confidence 3566777777 47777777777 6666 5542 44322 355555544333 3343 35555555555555553 11
Q ss_pred -------------------cchhhhhcCCCCCcEEEEecCCCcee----------eee------cCCCCCCCccEEEEEc
Q 039403 79 -------------------SGVSKSLCELHKLECLKLVNESKLSR----------MVL------SEYQFPPSLIQLSLSN 123 (249)
Q Consensus 79 -------------------~~~~~~l~~l~~L~~L~l~~~~~L~~----------l~l------~~~~~~~~L~~L~l~~ 123 (249)
..+| .+..+++|+.|+++++. +.. +.+ .+...+++|+.|++++
T Consensus 209 ~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 209 KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccCcccCcCCEEECcC
Confidence 1233 25556666666666643 222 211 1111023344444444
Q ss_pred ccCCC--CCcccc-------------cCC-CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCccc
Q 039403 124 TELME--DPMPML-------------ERL-PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGAL 187 (249)
Q Consensus 124 ~~~~~--~~~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 187 (249)
|.+++ ..+..+ ..+ ++|+.|++++|.+.+ . + ..+++|++|++++ +.++.+|. .+
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-l-p----~~~~~L~~L~L~~-N~l~~lp~---~l 356 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-L-P----ALPPRLERLIASF-NHLAEVPE---LP 356 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-C-C----CCCTTCCEEECCS-SCCSCCCC---CC
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-c-c----ccCCcCCEEECCC-Cccccccc---hh
Confidence 44432 111110 011 244455554444432 1 1 1246677777777 56666665 46
Q ss_pred ccccceeeccCcCcC--CCccccccC-------------cCccEEEccCCc
Q 039403 188 PKLESLIVNPCAYLR--KLPEELWCI-------------KSLRKLDLHWPQ 223 (249)
Q Consensus 188 ~~L~~L~l~~~~~~~--~l~~~l~~l-------------~~L~~l~l~~~~ 223 (249)
++|+.|++++|++.+ .+|..++.+ ++|+++++++|.
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 788888888888877 677777776 778888888886
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.5e-16 Score=139.85 Aligned_cols=197 Identities=21% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
++++.++++|..+. ++|+.| +++| .+. .+|. .+++|++|++.++. ..+|. .+++|++|++++|. .
T Consensus 47 ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--l- 113 (622)
T 3g06_A 47 VGESGLTTLPDCLP--AHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP--L- 113 (622)
T ss_dssp CCSSCCSCCCSCCC--TTCSEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC--C-
T ss_pred ecCCCcCccChhhC--CCCcEEEecCC-CCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc--C-
Confidence 35666777776654 677777 6666 554 4554 45666666644444 44544 45566666666653 1
Q ss_pred cchhhh---hc--------------CCCCCcEEEEecCCCceeeee----------------cCCCCCCCccEEEEEccc
Q 039403 79 SGVSKS---LC--------------ELHKLECLKLVNESKLSRMVL----------------SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 79 ~~~~~~---l~--------------~l~~L~~L~l~~~~~L~~l~l----------------~~~~~~~~L~~L~l~~~~ 125 (249)
..+|.. +. .+++|+.|+++++. +..++. .+...+++|+.|++++|.
T Consensus 114 ~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 112210 00 12445555555433 222111 000102455666666665
Q ss_pred CCCCCccccc-----------------CCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccc
Q 039403 126 LMEDPMPMLE-----------------RLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP 188 (249)
Q Consensus 126 ~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 188 (249)
+++ .+..+. .+++|+.|++++|.+.+ . + ..+++|+.|++++ |.++.+|. .++
T Consensus 193 l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-l-p----~~l~~L~~L~Ls~-N~L~~lp~---~~~ 261 (622)
T 3g06_A 193 LAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-L-P----VLPSELKELMVSG-NRLTSLPM---LPS 261 (622)
T ss_dssp CSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-C-C----CCCTTCCEEECCS-SCCSCCCC---CCT
T ss_pred CCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-C-C----CCCCcCcEEECCC-CCCCcCCc---ccc
Confidence 542 221110 12456666666665543 1 1 2457788888888 57777776 568
Q ss_pred cccceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 189 KLESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 189 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|+.|++++|.+. .+|..+..+++|+.+++++|+
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 8999999999977 789889999999999999996
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.1e-16 Score=128.48 Aligned_cols=169 Identities=23% Similarity=0.262 Sum_probs=141.4
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
...+++|+.|++.++. ..++ .+..+++|+.|++++|. ... ++. +..+++|+.|+++++. +..+. .+.. +++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~--l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~-l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTD-IKP-LANLKNLGWLFLDENK-VKDLS-SLKD-LKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCSSC-CCCGG-GGTT-CTT
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc--cCC-Ccc-cccCCCCCEEECCCCc-CCCCh-hhcc-CCC
Confidence 4568899999966666 5554 57889999999999996 444 444 8899999999999987 77765 5778 999
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIV 195 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 195 (249)
|+.|++++|.+++ ...+..+++|+.|++++|.+.+. .. +..+++|++|++++ +.++.++. +..+++|+.|++
T Consensus 114 L~~L~L~~n~i~~--~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 114 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp CCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC---GG-GGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEEC
T ss_pred CCEEECCCCcCCC--ChhhcCCCCCCEEEccCCcCCcc---hh-hccCCCCCEEEccC-Cccccchh-hcCCCccCEEEC
Confidence 9999999999974 36788999999999999998763 45 77899999999999 67887766 888999999999
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ ++. +..+++|+.+++++|+
T Consensus 186 ~~N~i~~-l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKNHISD-LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSSCCCB-CGG-GTTCTTCSEEEEEEEE
T ss_pred CCCcCCC-Chh-hccCCCCCEEECcCCc
Confidence 9999764 554 8899999999999985
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.2e-16 Score=140.13 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=112.5
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
.+.+..++. +..+++|+.| +..| .+. .++ .++.+++|+.|++.++. ..+++ +..+++|+.|++++|. .. .
T Consensus 30 ~~~i~~~~~-~~~L~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~ 101 (605)
T 1m9s_A 30 KKSVTDAVT-QNELNSIDQIIANNS-DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IK-D 101 (605)
T ss_dssp CSCTTSEEC-HHHHTTCCCCBCTTC-CCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CC-C
T ss_pred CCCcccccc-hhcCCCCCEEECcCC-CCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CC-C
Confidence 344444443 4667777777 6665 443 233 46667777777755555 44444 6677777777777774 32 2
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
++ .+..+++|+.|+++++. +..+. .+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.. . +
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~---~-l 171 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNG-ISDIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---P-L 171 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSC-CCCCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG---G-G
T ss_pred Ch-hhccCCCCCEEEecCCC-CCCCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch---h-h
Confidence 33 56667777777777765 55543 4556 67777777777776532 56667777777777777665532 2 4
Q ss_pred CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcC
Q 039403 161 GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
..+++|+.|++++ |.++.++ .+..+++|+.|+|++|++.+
T Consensus 172 ~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 172 AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 5667777777777 4666554 35667777777777776544
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.7e-16 Score=121.18 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
++|++|++.++. ..++. .+.++++|++|++++|. .....+..+..+++|++|+++++. ++.+.. .+.. +++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK-LTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcC-ccCCC
Confidence 466777754444 43433 35667777777777775 443333445677777777777766 665544 3566 77888
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeecc
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNP 197 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 197 (249)
+|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|+++++ . ..+.++.|+.|+++.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~-~~~l~~L~~L~l~~N-~------~~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGV-FDRLTSLQYIWLHDN-P------WDCTCPGIRYLSEWI 174 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCSC-C------BCCCTTTTHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHH-hccCCCccEEEecCC-C------eecCCCCHHHHHHHH
Confidence 8888888887545555778888888888888776533 344 667888889988884 2 234677888999988
Q ss_pred CcCcCCCccccccCcC
Q 039403 198 CAYLRKLPEELWCIKS 213 (249)
Q Consensus 198 ~~~~~~l~~~l~~l~~ 213 (249)
|.+.+.+|+.++.++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 8888888887776654
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.1e-16 Score=131.81 Aligned_cols=207 Identities=18% Similarity=0.194 Sum_probs=109.3
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC--CCcch-hcCCCcccCeEE-EecCcccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS--SCTPD-ILGRLPSVQTLR-ISGNLSCY 77 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~l~~l~~L~~L~-l~~~~~~~ 77 (249)
++++++||..+ .+++++| +++| .+...-+.+++++++|++|++.++. +.++. .|.++++++++. +..|. .
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l 92 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--L 92 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--C
T ss_pred CCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--c
Confidence 56788888776 3678888 7777 6663333457788888888865555 33443 456777776644 44453 4
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCC--------------------------ccEEEEEcccCCCCC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPS--------------------------LIQLSLSNTELMEDP 130 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~--------------------------L~~L~l~~~~~~~~~ 130 (249)
....+..+..+++|+.|+++++. ++.+.. .+.. ..+ ++.|++++|.++ ..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIH-SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCC-BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcc-cchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 33345667788888888887755 443332 1112 223 444444444443 22
Q ss_pred cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCCcccccc
Q 039403 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWC 210 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 210 (249)
+.......+++.+.+.++...+...... +..+++|++|++++ |.++.+|.. .+.+|+.|.+.++.-.+.+|. +..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~ 244 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEK 244 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCC-chh
Confidence 2222233344444444322222221222 34445555555555 344444432 233344444433333334443 556
Q ss_pred CcCccEEEccCC
Q 039403 211 IKSLRKLDLHWP 222 (249)
Q Consensus 211 l~~L~~l~l~~~ 222 (249)
+++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 677888887654
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=5.1e-18 Score=140.46 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=67.4
Q ss_pred CCCCccccchh-hhhcccccee-eecCcccCCCCC----CcCCCCc-cccccccccCC--CCcchhcCCC-----cccCe
Q 039403 2 PSSYIDQSPED-IWMMQKLMHL-NFGCITLPAPPK----NYFSSLK-NLIFISALHPS--SCTPDILGRL-----PSVQT 67 (249)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L-l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~--~~~~~~l~~l-----~~L~~ 67 (249)
+++.++..++. +...++|++| +++| .+.+..+ ..+..++ +|++|++.++. ...+..+..+ ++|++
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 44555533333 3333336666 6666 5544333 4445555 66666644444 2223333332 66666
Q ss_pred EEEecCccccccchhh----hhcCC-CCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEcccCCCCCcc----c
Q 039403 68 LRISGNLSCYHSGVSK----SLCEL-HKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTELMEDPMP----M 133 (249)
Q Consensus 68 L~l~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~~~~~~~~----~ 133 (249)
|++++|. .....+. .+..+ ++|+.|+++++. +..... .+..++++|++|++++|.+++.... .
T Consensus 85 L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 85 LNLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp EECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred EECcCCc--CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666664 3333222 23333 566666666644 433322 1222012455555555554432221 1
Q ss_pred ccCCC-CCceEEeeccccC
Q 039403 134 LERLP-RLQVLKLKRNSYL 151 (249)
Q Consensus 134 ~~~l~-~L~~L~l~~~~~~ 151 (249)
+..++ +|++|++++|.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCc
Confidence 22332 4555555555443
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=3.9e-16 Score=137.01 Aligned_cols=169 Identities=23% Similarity=0.262 Sum_probs=142.0
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPS 115 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~ 115 (249)
+..+++|+.|++.++. ..++ .+..+++|+.|++++|. ... ++. +..+++|+.|+++++. +..++ .+.. +++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~--l~~-~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~-l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK--LTD-IKP-LTNLKNLGWLFLDENK-IKDLS-SLKD-LKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC--CCC-CGG-GGGCTTCCEEECCSSC-CCCCT-TSTT-CTT
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC--CCC-Chh-hccCCCCCEEECcCCC-CCCCh-hhcc-CCC
Confidence 4578899999966655 5554 68899999999999996 444 443 8899999999999987 77765 7788 999
Q ss_pred ccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccceee
Q 039403 116 LIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIV 195 (249)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 195 (249)
|+.|+++.|.+.+ +..+..+++|+.|++++|.+.+. .. +..+++|+.|++++ +.++.++. +..+++|+.|+|
T Consensus 111 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~-l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~L 182 (605)
T 1m9s_A 111 LKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYL 182 (605)
T ss_dssp CCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC---GG-GGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEEC
T ss_pred CCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc---hh-hcccCCCCEEECcC-CcCCCchh-hccCCCCCEEEC
Confidence 9999999999974 46788999999999999998763 45 77899999999999 67776665 888999999999
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ ++ .+..+++|+.|++++|+
T Consensus 183 s~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred cCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 9999765 44 58899999999999985
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=4.5e-16 Score=118.82 Aligned_cols=171 Identities=21% Similarity=0.190 Sum_probs=125.8
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~ 78 (249)
+++.++++|..+ .++|++| +++| .+.+..+..++.+++|++|++.++. ..++. .+..+++|++|++++|. ..
T Consensus 15 ~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~ 89 (208)
T 2o6s_A 15 YSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQ 89 (208)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred cCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc--CC
Confidence 456778888665 4688888 8887 7775555567888999999966555 55554 45788899999999886 54
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLAC 157 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 157 (249)
...+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.+++..+..+..+++|+.|++.+|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------- 160 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------- 160 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------
T ss_pred ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------
Confidence 4444557888899999998877 776654 3667 88899999999988755555578888999999888754
Q ss_pred eCCCCCCcccEEEeccCCccc-ceeccCccccc
Q 039403 158 AGSGGFPELKVLHLKSMYWLD-EWTMGAGALPK 189 (249)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 189 (249)
.+.++.|++|.++. +.++ .+|..++.++.
T Consensus 161 --~~~~~~l~~L~~~~-n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 --DCTCPGIRYLSEWI-NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCCTTTTHHHHHHH-HHCTTTBBCTTSSBCT
T ss_pred --ecCCCCHHHHHHHH-HhCCceeeccCccccC
Confidence 33567788888887 4444 78877776554
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.6e-18 Score=142.23 Aligned_cols=216 Identities=15% Similarity=0.092 Sum_probs=157.2
Q ss_pred CCCCCccccc-----hhhhhcc-cccee-eecCcccCCCCCCcCCCC-----ccccccccccCC-C-Ccchh----cCCC
Q 039403 1 MPSSYIDQSP-----EDIWMMQ-KLMHL-NFGCITLPAPPKNYFSSL-----KNLIFISALHPS-S-CTPDI----LGRL 62 (249)
Q Consensus 1 l~~~~l~~lp-----~~i~~l~-~L~~L-l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~-~-~~~~~----l~~l 62 (249)
|+++.++.++ ..+..++ +|++| +++| .+.+..+..++.+ ++|++|++.++. + ..+.. +..+
T Consensus 29 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 29 LSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence 5678888888 5788898 99999 9998 8877767666665 999999976666 3 33333 4455
Q ss_pred -cccCeEEEecCccccccchhhh----hcC-CCCCcEEEEecCCCceeeee-----cCCCCCC-CccEEEEEcccCCCCC
Q 039403 63 -PSVQTLRISGNLSCYHSGVSKS----LCE-LHKLECLKLVNESKLSRMVL-----SEYQFPP-SLIQLSLSNTELMEDP 130 (249)
Q Consensus 63 -~~L~~L~l~~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~L~~l~l-----~~~~~~~-~L~~L~l~~~~~~~~~ 130 (249)
++|++|++++|. .....+.. +.. .++|++|+++++. +..... .+.. ++ +|+.|++++|.+++..
T Consensus 108 ~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 108 PFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAA-IPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp CTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSC
T ss_pred CCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhc-CCccccEeeecCCCCchhh
Confidence 899999999997 54443433 444 3699999999976 663322 3444 54 8999999999997655
Q ss_pred ccc----ccCC-CCCceEEeeccccCCce---eeeeCCCC-CCcccEEEeccCCcccce-----eccCcccccccceeec
Q 039403 131 MPM----LERL-PRLQVLKLKRNSYLGRK---LACAGSGG-FPELKVLHLKSMYWLDEW-----TMGAGALPKLESLIVN 196 (249)
Q Consensus 131 ~~~----~~~l-~~L~~L~l~~~~~~~~~---~~~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~ 196 (249)
+.. +..+ ++|+.|++++|.+.+.. ++.. +.. .++|++|++++ |.++.. ...+..+++|+.|+++
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 543 4455 59999999999987632 1222 223 46899999999 566633 3445678999999999
Q ss_pred cCcCcC-------CCccccccCcCccEEEccCCc
Q 039403 197 PCAYLR-------KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~-------~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+|.+.. .++..+..++.|+++++++|.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 998432 233456678899999999995
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.3e-15 Score=132.48 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=135.5
Q ss_pred cccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEE
Q 039403 18 KLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLK 95 (249)
Q Consensus 18 ~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (249)
+++.| +++| .+.+ +|..+. ++|++|++.++. ..+| ..+++|+.|++++|. +.. +|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n-~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~--l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRL-NLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR--LST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSS-CCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC--CSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCC-CCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC--CCC-cch-hhc--CCCEEE
Confidence 89999 8888 7764 777664 789999966666 7677 557899999999995 443 665 544 899999
Q ss_pred EecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCC
Q 039403 96 LVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMY 175 (249)
Q Consensus 96 l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (249)
++++. +..++. . +++|+.|++++|.+++ .|. .+++|+.|++++|.+.+ . +.. . ++|+.|++++ |
T Consensus 127 Ls~N~-l~~lp~---~-l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l-p~l--~--~~L~~L~Ls~-N 190 (571)
T 3cvr_A 127 VDNNQ-LTMLPE---L-PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L-PEL--P--ESLEALDVST-N 190 (571)
T ss_dssp CCSSC-CSCCCC---C-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CCC--C--TTCCEEECCS-S
T ss_pred CCCCc-CCCCCC---c-CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c-chh--h--CCCCEEECcC-C
Confidence 99987 777553 5 8899999999999874 444 57889999999998876 2 322 2 8899999999 6
Q ss_pred cccceeccCcccccc-------cceeeccCcCcCCCccccccCcCccEEEccCCc
Q 039403 176 WLDEWTMGAGALPKL-------ESLIVNPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 176 ~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
.++.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 8888887 543 67 99999999976 688888889999999999996
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=2.4e-16 Score=137.07 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=144.6
Q ss_pred CCCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccc
Q 039403 1 MPSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYH 78 (249)
Q Consensus 1 l~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (249)
|+++.++.+|..+ +++|+.| +++| .+. .+| ..+++|++|++.++. ..+|. +.. +|+.|++++|. ..
T Consensus 66 Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~--l~ 133 (571)
T 3cvr_A 66 LNRLNLSSLPDNL--PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ--LT 133 (571)
T ss_dssp CCSSCCSCCCSCC--CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC--CS
T ss_pred eCCCCCCccCHhH--cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc--CC
Confidence 5688999999987 4899999 8888 777 677 557999999966666 66777 655 99999999996 44
Q ss_pred cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeee
Q 039403 79 SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACA 158 (249)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 158 (249)
+ +|. .+++|+.|+++++. +..++. . +++|+.|++++|.+++ .|. +. ++|+.|++++|.++. . +..
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~-l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l-p~~ 198 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQ-LTMLPE---L-PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L-PAV 198 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSC-CSCCCC---C-CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C-CCC
T ss_pred C-CCC---cCccccEEeCCCCc-cCcCCC---c-CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h-hhH
Confidence 3 665 68999999999988 876552 4 7899999999999985 555 55 899999999998873 2 222
Q ss_pred CCCCCCcc-------cEEEeccCCcccceeccCcccccccceeeccCcCcCCCccccccCc
Q 039403 159 GSGGFPEL-------KVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKLPEELWCIK 212 (249)
Q Consensus 159 ~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 212 (249)
. .+| +.|++++ |.++.+|..+..+++|+.|++++|++.+.+|..++.+.
T Consensus 199 -~---~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 199 -P---VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -C-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -H---HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 2 156 9999999 78999999888899999999999999887777666543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.9e-16 Score=118.22 Aligned_cols=152 Identities=17% Similarity=0.245 Sum_probs=119.0
Q ss_pred CCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCC
Q 039403 37 FSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPP 114 (249)
Q Consensus 37 ~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~ 114 (249)
.+.+++|++|++.++. ..++ .+..+++|+.|++++|. . ..+ ..+..+++|++|+++++. +..... .+.. ++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~--~-~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~-l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH--A-TNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSG-LT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC--C-SCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTT-CT
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC--C-Ccc-hhhhcCCCCCEEEeECCc-cCcccChhhcC-CC
Confidence 3667888888866655 6566 67888999999999884 3 223 367888999999999876 665222 6777 89
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc-cCCceeeeeCCCCCCcccEEEeccCCcccceeccCcccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS-YLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGAGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 193 (249)
+|+.|++++|.+++..+..++.+++|++|++++|. +.. . + . +..+++|++|++++ +.++.++ .+..+++|+.|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~-~-~-l~~l~~L~~L~l~~-n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-I-M-P-LKTLPELKSLNIQF-DGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-C-G-G-GGGCSSCCEEECTT-BCCCCCT-TGGGCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-c-H-h-hcCCCCCCEEECCC-CCCcChH-HhccCCCCCEE
Confidence 99999999999986678889999999999999997 543 3 2 5 77889999999999 6777766 67789999999
Q ss_pred eeccCcCc
Q 039403 194 IVNPCAYL 201 (249)
Q Consensus 194 ~l~~~~~~ 201 (249)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 99999864
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=1.5e-15 Score=133.61 Aligned_cols=183 Identities=20% Similarity=0.181 Sum_probs=107.0
Q ss_pred cccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcE
Q 039403 16 MQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLEC 93 (249)
Q Consensus 16 l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (249)
..+++.| ++++ .+. .+|..+. ++|++|++.++. ..+|. .+++|+.|++++|. . ..+|. .+++|+.
T Consensus 39 ~~~l~~L~ls~n-~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGES-GLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ--L-TSLPV---LPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSS-CCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC--C-SCCCC---CCTTCCE
T ss_pred CCCCcEEEecCC-CcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc--C-CcCCC---CCCCCCE
Confidence 3468899 8877 766 7887776 899999976666 66775 67999999999995 3 34554 6788999
Q ss_pred EEEecCCCceeee----------e------cCCCCCCCccEEEEEcccCCC--CCcccccC--------------CCCCc
Q 039403 94 LKLVNESKLSRMV----------L------SEYQFPPSLIQLSLSNTELME--DPMPMLER--------------LPRLQ 141 (249)
Q Consensus 94 L~l~~~~~L~~l~----------l------~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~--------------l~~L~ 141 (249)
|+++++. +..++ + .+...+++|++|++++|.+++ ..+..+.. +++|+
T Consensus 106 L~Ls~N~-l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 106 LSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp EEECSCC-CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred EECcCCc-CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence 9998865 44332 2 111113566666666666553 11111111 15566
Q ss_pred eEEeeccccCCceeeeeCC-----------------CCCCcccEEEeccCCcccceeccCcccccccceeeccCcCcCCC
Q 039403 142 VLKLKRNSYLGRKLACAGS-----------------GGFPELKVLHLKSMYWLDEWTMGAGALPKLESLIVNPCAYLRKL 204 (249)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 204 (249)
.|++++|.+.+- +.. + ..+++|+.|++++ |.++.+| ..+++|+.|++++|.+. .+
T Consensus 185 ~L~Ls~N~l~~l--~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 185 ELSVSDNQLASL--PTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp EEECCSSCCSCC--CCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSSCCS-CC
T ss_pred EEECCCCCCCCC--CCc-cchhhEEECcCCcccccCCCCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCCCCC-cC
Confidence 666666655431 111 0 0113445555554 3444444 23455666666666544 34
Q ss_pred ccccccCcCccEEEccCCc
Q 039403 205 PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 205 ~~~l~~l~~L~~l~l~~~~ 223 (249)
|. .+++|+.|++++|.
T Consensus 257 p~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CC---CCTTCCEEECCSSC
T ss_pred Cc---ccccCcEEeCCCCC
Confidence 44 35666666666664
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=9.3e-16 Score=126.30 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=127.9
Q ss_pred eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEE-ec
Q 039403 23 NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKL-VN 98 (249)
Q Consensus 23 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l-~~ 98 (249)
-+++ .++ ++|..+. +++++|++.++. ..+|. .|.++++|++|++++|. ..+.++ ..|.+++++..+.. ..
T Consensus 16 C~~~-~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 16 CQES-KVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEST-TCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT--TCCEECTTSBCSCTTCCEEEEEEE
T ss_pred ecCC-CCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC--CCCccChhHhhcchhhhhhhcccC
Confidence 4444 444 7787663 689999966666 77776 57899999999999996 656554 45788998887554 44
Q ss_pred CCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCC-CcccEEEeccCCc
Q 039403 99 ESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGF-PELKVLHLKSMYW 176 (249)
Q Consensus 99 ~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 176 (249)
+. +..+.. .+.. +++|++|++++|.+....+..+....++..+++.++.......... +... ..++.|++++ +.
T Consensus 90 N~-l~~l~~~~f~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~-N~ 165 (350)
T 4ay9_X 90 NN-LLYINPEAFQN-LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNK-NG 165 (350)
T ss_dssp TT-CCEECTTSBCC-CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCS-SC
T ss_pred Cc-ccccCchhhhh-ccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhcchhhhhhcccc-cc
Confidence 55 888765 6778 9999999999999875444444445566677776533222221222 3333 3566777777 66
Q ss_pred ccceeccCcccccccceeeccCcCcCCCcc-ccccCcCccEEEccCCc
Q 039403 177 LDEWTMGAGALPKLESLIVNPCAYLRKLPE-ELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 177 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~l~l~~~~ 223 (249)
+++++.......+|+.+++.+|...+.+|. .+..+++|++|++++|.
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 777776666666777777765544455654 45667777777777774
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=2.4e-16 Score=139.03 Aligned_cols=131 Identities=18% Similarity=0.106 Sum_probs=68.5
Q ss_pred cccccccccCC-CCcc-hhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccE
Q 039403 42 NLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQ 118 (249)
Q Consensus 42 ~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~ 118 (249)
++++|++.++. ..++ ..|.++++|++|++++|. .....+..|.++++|++|+++++. ++.++. +|.. +++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~-L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSLQK 128 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-CTTCCE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-CCCCCE
Confidence 55556644433 3333 245556666666666553 333233445556666666666555 555554 3455 556666
Q ss_pred EEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 119 LSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
|++++|.+++..+..++.+++|++|++++|.+.....+.. ++.+++|++|++++ +.++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~-N~l~ 186 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS-NKIQ 186 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCS-SCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccC-cccc
Confidence 6666665553333345556666666666555543222333 44555566666665 3444
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.4e-18 Score=147.95 Aligned_cols=208 Identities=17% Similarity=0.096 Sum_probs=115.2
Q ss_pred cchhhhhcccccee-eecCcccCCCCCCcCC-----CCccccccccccCC-CC-----cchhcCCCcccCeEEEecCccc
Q 039403 9 SPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-----SLKNLIFISALHPS-SC-----TPDILGRLPSVQTLRISGNLSC 76 (249)
Q Consensus 9 lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~~ 76 (249)
++..+..+++|++| +++| .+....+..+. ..++|++|++.++. .. ++..+..+++|+.|++++|.
T Consensus 162 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-- 238 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-- 238 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--
T ss_pred HHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--
Confidence 45555566666666 6555 44322222222 13466666644444 22 34455556666666666664
Q ss_pred cccch-----hhhhcCCCCCcEEEEecCCCcee-----eeecCCCCCCCccEEEEEcccCCCCCccccc-----CCCCCc
Q 039403 77 YHSGV-----SKSLCELHKLECLKLVNESKLSR-----MVLSEYQFPPSLIQLSLSNTELMEDPMPMLE-----RLPRLQ 141 (249)
Q Consensus 77 ~~~~~-----~~~l~~l~~L~~L~l~~~~~L~~-----l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~ 141 (249)
..... +..+..+++|+.|+++++. +.. +.-.+.. +++|+.|++++|.+++..+..+. ..++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 32221 1112245666666666654 443 2223444 56677777777665432222222 124677
Q ss_pred eEEeeccccCCce---eeeeCCCCCCcccEEEeccCCcccce-eccCc-----ccccccceeeccCcCcC----CCcccc
Q 039403 142 VLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLDEW-TMGAG-----ALPKLESLIVNPCAYLR----KLPEEL 208 (249)
Q Consensus 142 ~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~----~l~~~l 208 (249)
.|++++|.+++.. ++.. +..+++|++|++++ +.+++. +..+. ..+.|+.|++++|.+.+ .++..+
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHH-HhhCCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 7777776665432 1223 44567888888887 455522 22222 15678888888888764 567777
Q ss_pred ccCcCccEEEccCCc
Q 039403 209 WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 209 ~~l~~L~~l~l~~~~ 223 (249)
..+++|+++++++|.
T Consensus 395 ~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 395 LANHSLRELDLSNNC 409 (461)
T ss_dssp HHCCCCCEEECCSSS
T ss_pred HhCCCccEEECCCCC
Confidence 778888888888885
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.1e-16 Score=123.39 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=122.6
Q ss_pred hcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCc
Q 039403 15 MMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLE 92 (249)
Q Consensus 15 ~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (249)
.+.++..+ +..+ .+. .++ .+..+++|++|++.++. ..++ .+..+++|+.|++++|. ..+ ++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~-~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~--i~~-~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVT-DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ--ISD-LSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCS-CTT-SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC--CCC-CGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCC-Ccc-ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc--cCC-Chh-hccCCCCC
Confidence 45566666 6665 444 333 56778889999866655 5555 67788899999999885 433 444 88889999
Q ss_pred EEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEec
Q 039403 93 CLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLK 172 (249)
Q Consensus 93 ~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 172 (249)
.|+++++. ++.++. + . .++|+.|++++|.+++ ...+..+++|+.|++++|.+.+. .. +..+++|++|+++
T Consensus 89 ~L~L~~N~-l~~l~~-~-~-~~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~~~---~~-l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 89 ELSVNRNR-LKNLNG-I-P-SACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI---VM-LGFLSKLEVLDLH 158 (263)
T ss_dssp EEECCSSC-CSCCTT-C-C-CSSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCCBC---GG-GGGCTTCCEEECT
T ss_pred EEECCCCc-cCCcCc-c-c-cCcccEEEccCCccCC--ChhhcCcccccEEECCCCcCCCC---hH-HccCCCCCEEECC
Confidence 99998877 665432 1 1 2578889999888864 34688888899999988887652 24 6678888999988
Q ss_pred cCCcccceeccCcccccccceeeccCcCcC
Q 039403 173 SMYWLDEWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 173 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
+ +.++++ ..+..+++|+.|++++|++..
T Consensus 159 ~-N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 159 G-NEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp T-SCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred C-CcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 8 677766 567788888999998888664
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=3e-18 Score=145.97 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=18.2
Q ss_pred cccccceeeccCcCcCC----CccccccCcCccEEEccCCc
Q 039403 187 LPKLESLIVNPCAYLRK----LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~----l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++|.+... ++..+..+++|+++++++|.
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 44555555555554331 33444445555555555553
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=2.6e-15 Score=116.36 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=71.7
Q ss_pred CCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcch-hcCCCcccCeEEEecCcccccc
Q 039403 3 SSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
++.++++|..+. ++|++| +++| .+.+..+..+..+++|++|++.++. ..++. .+..+++|+.|++++|. ...
T Consensus 28 ~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~ 102 (229)
T 3e6j_A 28 SKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ--LTV 102 (229)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred CCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc--CCc
Confidence 455566665543 566666 5555 5555555555566666666644444 44433 23556666666666654 333
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecccc
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSY 150 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 150 (249)
..+..+..+++|+.|+++++. ++.++..+.. +++|+.|++++|.++...+..+..+++|+.|++.+|.+
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 223334455555555555544 4444334444 45555555555555432223344455555555554443
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=1.9e-15 Score=116.46 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=72.9
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
+++++|++.++. ..++. .+..+++|+.|++++|. .....|..+..+++|+.|+++++. ++.++. .+.. +++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~-l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEG-LFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccC-CCCCC
Confidence 455555533333 33332 44556666666666664 444345555666666666666655 555443 2455 66666
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
.|++++|.+++..+..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGT-FSPLRAIQTMHLAQ 161 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTT-TTTCTTCCEEECCS
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHH-HhCCCCCCEEEeCC
Confidence 6666666666555566666667777777766665433 334 55566677777766
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.8e-15 Score=125.14 Aligned_cols=162 Identities=22% Similarity=0.160 Sum_probs=101.6
Q ss_pred CCcchhcCCCcccCeEEEecCccccccchhhhhc-CCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCC
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLC-ELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDP 130 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~ 130 (249)
..+|..+. +.++.|++++|. .....+..+. .+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVP-VPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSSCCCEEC
T ss_pred CccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCc-CCccChhhccC-CCCCCEEECCCCcCCcCC
Confidence 44554432 346677777774 4443344454 67777777777766 666654 4666 777777777777776444
Q ss_pred cccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceeccC----cccccccceeeccCcCcCCCcc
Q 039403 131 MPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMGA----GALPKLESLIVNPCAYLRKLPE 206 (249)
Q Consensus 131 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~l~~ 206 (249)
+..+..+++|+.|++++|.+.... +.. +..+++|+.|++++ |.++.++... ..+++|+.|++++|.+...-+.
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~-~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVD-RNA-FEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEEC-TTT-TTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred HHHhCCCcCCCEEECCCCcccEEC-HHH-hCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 455677777777777777765432 344 66677777777777 5666666544 4577777888877776542223
Q ss_pred ccccCcC--ccEEEccCCc
Q 039403 207 ELWCIKS--LRKLDLHWPQ 223 (249)
Q Consensus 207 ~l~~l~~--L~~l~l~~~~ 223 (249)
.+..++. ++.+++++|+
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 4555655 3677777764
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=5.7e-15 Score=114.44 Aligned_cols=150 Identities=17% Similarity=0.094 Sum_probs=93.3
Q ss_pred ccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 43 LIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 43 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
-+.++..+.. ..+|..+. ++|+.|++++|. .....+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~-l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDS-LTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCCC-CCCcChhhccc-CCCcCEEE
Confidence 3445533333 55665443 778888888886 555556667777777777777766 665553 3455 66777777
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCA 199 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 199 (249)
+++|.++...+..+..+++|+.|++++|.+.. . +.. +..+++|++|++++ |.++.++. .+..+++|+.|++++|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-l-p~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-L-PRG-IERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-C-CTT-GGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccc-c-Ccc-cccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777664444445666777777777666652 2 444 55666677777766 55665553 34566667777777666
Q ss_pred CcC
Q 039403 200 YLR 202 (249)
Q Consensus 200 ~~~ 202 (249)
+..
T Consensus 171 ~~c 173 (229)
T 3e6j_A 171 WDC 173 (229)
T ss_dssp BCT
T ss_pred ccC
Confidence 554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=113.36 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=101.3
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchh-hhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVS-KSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
+.+++.++. ..+|..+. ..++.|++++|. .....+ ..+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~-l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEG-ASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEE
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCC-CCCCCEEE
Confidence 456634434 56665443 345788888885 443322 346777888888887776 776665 5666 77788888
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCA 199 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 199 (249)
+++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ |.++.+ |..+..+++|+.|++++|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDS-FIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTS-STTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhH-cCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8888777555566777777888888777776543 445 66777777777777 566655 5566677777777777777
Q ss_pred CcCC
Q 039403 200 YLRK 203 (249)
Q Consensus 200 ~~~~ 203 (249)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 6543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=3.6e-15 Score=117.93 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=130.4
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHS 79 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (249)
+++.+++++ .+..+++|+.| +.+| .+. .++ .++.+++|++|++.++. ..++. +.++++|+.|++++|. . .
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--l-~ 98 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNS-NIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--L-K 98 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTS-CCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--C-S
T ss_pred cCCCccccc-chhhcCcCcEEECcCC-Ccc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--c-C
Confidence 567888888 78999999999 8888 665 455 68899999999966666 66666 8999999999999995 3 3
Q ss_pred chhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeC
Q 039403 80 GVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAG 159 (249)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (249)
.++. +.. ++|+.|+++++. +..+. .+.. +++|+.|++++|.+++ . ..+..+++|+.|++++|.+.+. ..
T Consensus 99 ~l~~-~~~-~~L~~L~L~~N~-l~~~~-~l~~-l~~L~~L~Ls~N~i~~-~-~~l~~l~~L~~L~L~~N~i~~~---~~- 167 (263)
T 1xeu_A 99 NLNG-IPS-ACLSRLFLDNNE-LRDTD-SLIH-LKNLEILSIRNNKLKS-I-VMLGFLSKLEVLDLHGNEITNT---GG- 167 (263)
T ss_dssp CCTT-CCC-SSCCEEECCSSC-CSBSG-GGTT-CTTCCEEECTTSCCCB-C-GGGGGCTTCCEEECTTSCCCBC---TT-
T ss_pred CcCc-ccc-CcccEEEccCCc-cCCCh-hhcC-cccccEEECCCCcCCC-C-hHHccCCCCCEEECCCCcCcch---HH-
Confidence 3443 333 899999999987 77765 6778 9999999999999974 3 4788999999999999998764 45
Q ss_pred CCCCCcccEEEeccCCccccee
Q 039403 160 SGGFPELKVLHLKSMYWLDEWT 181 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~ 181 (249)
+..+++|+.|++++ +.+...+
T Consensus 168 l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEE-EEEECCC
T ss_pred hccCCCCCEEeCCC-CcccCCc
Confidence 78899999999999 5555333
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.1e-14 Score=112.16 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCc
Q 039403 53 SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPM 131 (249)
Q Consensus 53 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~ 131 (249)
..+|..+. ++|+.|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|++|++++|.++...+
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQG-LRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTT-CSSCCEEECCSSCCCCCCT
T ss_pred CcCCCccC--cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhC-CcCCCEEECCCCcCCccCH
Confidence 55665543 578888888885 544444567777888888887776 666643 5666 7777778887777764333
Q ss_pred ccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcC
Q 039403 132 PMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 202 (249)
..+..+++|+.|++++|.+.+.. +.. +..+++|++|++++ |.++.++. .+..+++|+.|++++|++..
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLR-VDA-FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred hHccCCCCCCEEECCCCCCCEeC-HHH-cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 44567777777777777766543 444 66677777777777 56665554 35567777777777777543
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=3.9e-16 Score=136.93 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCC-CccccccCcCccEEEccCCc
Q 039403 163 FPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++|++|++++ +.++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.
T Consensus 462 ~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGY-VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECS-CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccC-CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 45555555555 2333 2333344556666666666664332 33333456666666666664
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=4e-17 Score=142.31 Aligned_cols=121 Identities=20% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEE
Q 039403 90 KLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVL 169 (249)
Q Consensus 90 ~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 169 (249)
.|+.|+++++. ++.++ .+.. +++|+.|++++|.++ ..|..++.+++|+.|++++|.+++ . + . ++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~-l~~lp-~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l-p-~-l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLC-HLEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-D-G-VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSC-CSSCC-CGGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-G-G-GTTCSSCCEE
T ss_pred CceEEEecCCC-CCCCc-Cccc-cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C-c-c-cCCCCCCcEE
Confidence 58889999887 87776 4777 899999999999998 788899999999999999999886 3 4 6 8899999999
Q ss_pred EeccCCcccce--eccCcccccccceeeccCcCcCCCcc---ccccCcCccEEEc
Q 039403 170 HLKSMYWLDEW--TMGAGALPKLESLIVNPCAYLRKLPE---ELWCIKSLRKLDL 219 (249)
Q Consensus 170 ~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~l~~---~l~~l~~L~~l~l 219 (249)
++++ |.++.+ |..++.+++|+.|++++|++.+..+. .+..+++|+.|++
T Consensus 514 ~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999 788876 88899999999999999998764332 2334789998864
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=112.98 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=53.5
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+..+++|+.|++++|. .....+..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++++|.+++..+..+..+
T Consensus 53 ~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 53 FKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp GGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred hccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCC
Confidence 3445555555555553 333223344455555555555544 444333 2444 5555555555555554344455555
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEecc
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKS 173 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 173 (249)
++|+.|++++|.+.+.. +.. +..+++|+.|++++
T Consensus 129 ~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVA-PGA-FDTLHSLSTLNLLA 162 (220)
T ss_dssp TTCSEEECTTSCCCCBC-TTT-TTTCTTCCEEECCS
T ss_pred ccCCEEECCCCcCCEEC-HHH-hcCCCCCCEEEecC
Confidence 55555555555554432 333 44555555555555
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.4e-14 Score=106.66 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=85.1
Q ss_pred CCcccCeEEEecCccccc-cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 61 RLPSVQTLRISGNLSCYH-SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +..+ ..+.. +++|++|++++|.+++..+..+..+++
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 34678888888875 44 3566666677777777777765 5555 35566 777777777777776545555555777
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec----cCcccccccceeeccCcC
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM----GAGALPKLESLIVNPCAY 200 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 200 (249)
|++|++++|.+.+...+.. +..+++|++|++++ +.++.++. .+..+++|+.|++++|..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEeccCCccCcchhHHH-HhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777776655221134 55666677777766 45555544 455666666666666663
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=5.9e-16 Score=135.78 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCCccEEEEEccc--CCCCCcccc-cCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCccc
Q 039403 113 PPSLIQLSLSNTE--LMEDPMPML-ERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGAL 187 (249)
Q Consensus 113 ~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 187 (249)
+++|+.|+++.|. +++..+..+ ..+++|+.|++++|.+++...+.. +..+++|++|++++|. ++ .++.....+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l 512 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIAAAVTKL 512 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHHHHHHHC
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHHHHHHhc
Confidence 4555566655432 332222222 235666666666666554332333 4566777777777744 44 234444456
Q ss_pred ccccceeeccCcCcCC-CccccccCcCccEEEccCC
Q 039403 188 PKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 188 ~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~ 222 (249)
++|+.|++++|+++.. +......++.+....+..+
T Consensus 513 ~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6777777777775542 2112224555554444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=7e-17 Score=140.81 Aligned_cols=179 Identities=18% Similarity=0.136 Sum_probs=133.0
Q ss_pred CCCccccccccccCC-CCcchhcCCCcccCeEEEecCcc-----------ccccchhhhhcCCCCCcEEE-EecCC--Cc
Q 039403 38 SSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLS-----------CYHSGVSKSLCELHKLECLK-LVNES--KL 102 (249)
Q Consensus 38 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~-----------~~~~~~~~~l~~l~~L~~L~-l~~~~--~L 102 (249)
..+++|+.|++.++. ..+|..++++++|+.|+++++.. ...+..|..+..+++|+.|+ ++.+. .+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 567788888855544 77888888888888888765520 02334566677777777776 33321 01
Q ss_pred eeeee---cCCCC-CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 103 SRMVL---SEYQF-PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 103 ~~l~l---~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
..+.+ .+..+ ...|+.|++++|.+++ .|. ++.+++|+.|++++|.+. .. |.. ++.+++|+.|++++ |.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~l-p~~-~~~l~~L~~L~Ls~-N~l~ 499 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-AL-PPA-LAALRCLEVLQASD-NALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CC-CGG-GGGCTTCCEEECCS-SCCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-cc-chh-hhcCCCCCEEECCC-CCCC
Confidence 11111 11110 2368899999999984 555 899999999999999987 33 667 88999999999999 7888
Q ss_pred ceeccCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 179 EWTMGAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 179 ~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
.+| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|+
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 888 7889999999999999987654 8899999999999999996
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=1.5e-14 Score=119.55 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCccccchhhhhcccccee-eecCcccCCCCCCcCC-CCccccccccccCC-CCcc-hhcCCCcccCeEEEecCcccc
Q 039403 2 PSSYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFS-SLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+++.++++|..+. ++++.| +++| .+.+..+..+. .+++|++|++.++. ..++ ..+.++++|+.|++++|. .
T Consensus 26 ~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l 100 (361)
T 2xot_A 26 SKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH--L 100 (361)
T ss_dssp CSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--C
T ss_pred CCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc--C
Confidence 3555666665543 345666 5555 55543444444 56666666644444 3333 345566666666666664 3
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccc---cCCCCCceEEeeccccC
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPML---ERLPRLQVLKLKRNSYL 151 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~ 151 (249)
....+..+..+++|+.|+++++. +..+.. .+.. +++|+.|++++|.++......+ ..+++|+.|++++|.+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 33333445566666666666655 555433 4555 5666666666666553222222 34556666666666554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=4.8e-14 Score=103.80 Aligned_cols=131 Identities=23% Similarity=0.165 Sum_probs=109.0
Q ss_pred cCCCCCcEEEEecCCCce--eeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCC
Q 039403 86 CELHKLECLKLVNESKLS--RMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGF 163 (249)
Q Consensus 86 ~~l~~L~~L~l~~~~~L~--~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (249)
...++|+.|+++++. +. .++..+.. +++|+.|++++|.+++. ..+..+++|++|++++|.+.+.. +.. +..+
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL-DML-AEKL 94 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCC-CHH-HHHC
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHH-HHH-HhhC
Confidence 345889999999977 76 55546677 89999999999998753 78889999999999999987753 555 5668
Q ss_pred CcccEEEeccCCccccee--ccCcccccccceeeccCcCcCCCc---cccccCcCccEEEccCCc
Q 039403 164 PELKVLHLKSMYWLDEWT--MGAGALPKLESLIVNPCAYLRKLP---EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~l~l~~~~ 223 (249)
++|++|++++ +.++.++ ..+..+++|+.|++++|++.+..+ ..+..+++|+++++++|.
T Consensus 95 ~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9999999999 6788766 677899999999999999775333 378899999999999996
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=2.4e-14 Score=103.29 Aligned_cols=103 Identities=23% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccccee--ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWT--MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L 190 (249)
+++|+.|++++|.+++. ..++.+++|++|++++|.+.+.. +.. +..+++|++|++++ +.+++++ ..+..+++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~-~~~-~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL-EVL-AEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT-HHH-HHHCTTCCEEECTT-SCCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH-HHH-hhhCCCCCEEECCC-CcCCChHHHHHHhhCCCC
Confidence 44444444444444322 44455555555555555554432 333 33455666666666 4455433 455666677
Q ss_pred cceeeccCcCcCCCc---cccccCcCccEEEcc
Q 039403 191 ESLIVNPCAYLRKLP---EELWCIKSLRKLDLH 220 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~---~~l~~l~~L~~l~l~ 220 (249)
++|++++|++.+..+ ..+..+++|++++++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777776554322 246667777777665
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=5.4e-14 Score=101.45 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=97.5
Q ss_pred CCcccCeEEEecCccccc-cchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC
Q 039403 61 RLPSVQTLRISGNLSCYH-SGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR 139 (249)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (249)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +..+ ..+.. +++|+.|++++|.+++..+..+..+++
T Consensus 15 ~~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCC
Confidence 35778888888886 54 4667777888888888888876 6666 36677 888888888888887556666777888
Q ss_pred CceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec----cCcccccccceeec
Q 039403 140 LQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM----GAGALPKLESLIVN 196 (249)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~ 196 (249)
|++|++++|.+.+...+.. ++.+++|++|++++ +.++.++. .+..+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888888776321345 67788888888888 56776654 56678888888775
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=1.1e-14 Score=130.52 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=51.2
Q ss_pred CCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCC
Q 039403 34 KNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQF 112 (249)
Q Consensus 34 ~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~ 112 (249)
+..+..+++|+.|++.++. ..+|..+.++++|++|+|++|. +. .+|..+..+++|+.|+++++. +..++..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~- 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS--LT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS- 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC--CS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG-
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc--Cc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcC-
Confidence 3344445555555533333 4444444445555555555553 22 444444555555555555544 4444334444
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 445555555555443 344444455555555555544443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.3e-12 Score=98.31 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=75.6
Q ss_pred CeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceE
Q 039403 66 QTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVL 143 (249)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (249)
+.++++++. .+.+|..+. .+++.|+++++. +..+.. .+.. +++|++|++++|.+++..+..+..+++|+.|
T Consensus 11 ~~l~~s~~~---l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSC---CSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCC---cCcCccCCC--CCCCEEECCCCc-CCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 566666663 244444332 266677776665 555543 2555 6667777777776665445666666667777
Q ss_pred EeeccccCCceeeeeCCCCCCcccEEEeccCCcccce-eccCcccccccceeeccCcCcCC
Q 039403 144 KLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEW-TMGAGALPKLESLIVNPCAYLRK 203 (249)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 203 (249)
++++|.+.+.. +.. +..+++|++|++++ |.++.+ |..+..+++|++|++++|++.+.
T Consensus 84 ~Ls~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 84 QLGENKIKEIS-NKM-FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSCCCCEEC-SSS-STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCccC-HHH-hcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 76666665433 334 55566666666666 455533 44555666666666666665543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=2.9e-13 Score=100.41 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcc
Q 039403 87 ELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPEL 166 (249)
Q Consensus 87 ~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 166 (249)
++++|+.|+++++. ++.++ .+....++|+.|++++|.+++ . ..+..+++|++|++++|.+.+.. +.. +..+++|
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIG-EGL-DQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEEC-SCH-HHHCTTC
T ss_pred CcCCceEEEeeCCC-CchhH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccC-cch-hhcCCCC
Confidence 34445555554443 44332 222203367777777777763 2 56677788888888888776421 222 3567888
Q ss_pred cEEEeccCCcccceec--cCcccccccceeeccCcCcCCCccc----cccCcCccEEEccCCcH
Q 039403 167 KVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLRKLPEE----LWCIKSLRKLDLHWPQT 224 (249)
Q Consensus 167 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~~----l~~l~~L~~l~l~~~~~ 224 (249)
++|++++ |.++.++. .+..+++|+.|++++|++. .+|.. +..+++|+.+++++|..
T Consensus 91 ~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888 67777776 6778889999999999876 45653 78899999999999973
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.6e-12 Score=97.78 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=89.2
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchhh-hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSK-SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLS 120 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~ 120 (249)
+++++.+.. ..+|..+.. +|+.|++++|. .....+. .+..+++|+.|+++++. ++.+.. .+.. +++|+.|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG-ASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT-CTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC-cccCCEEE
Confidence 556644444 667765543 78888888885 4333332 37788888888888877 776644 6677 88888888
Q ss_pred EEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc
Q 039403 121 LSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
+++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ |.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~-N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGS-FEHLNSLTSLNLAS-NPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTS-STTCTTCCEEECTT-CCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHH-hhcCCCCCEEEeCC-CCcc
Confidence 8888887655566778888888888888877643 455 77788888888888 4443
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=9.7e-15 Score=128.03 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=102.1
Q ss_pred CCccccccccccCC-C--CcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecC---------C------
Q 039403 39 SLKNLIFISALHPS-S--CTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNE---------S------ 100 (249)
Q Consensus 39 ~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---------~------ 100 (249)
.+++|++|++.++. . .+...+.++++|+.|++++|. ....++.....+++|+.|++.+. .
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 46677777755554 1 233334567777777777663 22333333445677777777320 0
Q ss_pred --------Cceeeee-----------cC-CCCCCCccEEEEE--c----ccCCCC-----CcccccCCCCCceEEeeccc
Q 039403 101 --------KLSRMVL-----------SE-YQFPPSLIQLSLS--N----TELMED-----PMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 101 --------~L~~l~l-----------~~-~~~~~~L~~L~l~--~----~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 149 (249)
.|+.+.+ .+ .. +++|+.|+++ + +.++.. .+..+..+++|+.|++.+ .
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHH-CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhh-CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 0222221 11 23 5667777776 2 233311 111245566777777754 3
Q ss_pred cCCceeeeeCCC-CCCcccEEEeccCCccc--ceeccCcccccccceeeccCcCcCC-CccccccCcCccEEEccCCc
Q 039403 150 YLGRKLACAGSG-GFPELKVLHLKSMYWLD--EWTMGAGALPKLESLIVNPCAYLRK-LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 150 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~l~l~~~~ 223 (249)
+++.. ... +. .+++|+.|++++| .++ .+......+++|+.|++++|++++. +...+..+++|++|++++|+
T Consensus 443 l~~~~-~~~-l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 443 LTDKV-FEY-IGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCHHH-HHH-HHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ccHHH-HHH-HHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 43332 112 22 3788999999884 454 2333235689999999999997543 22345568999999999997
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=4.8e-14 Score=126.43 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=109.0
Q ss_pred CCccccchhhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCccccccch
Q 039403 4 SYIDQSPEDIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGV 81 (249)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (249)
+.+...|..+..+++|+.| +++| .+. .+|..++.+++|++|++.++. ..+|..++++++|+.|+|++|. +. .+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~--l~-~l 285 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR--LT-SL 285 (727)
T ss_dssp -----------CCCCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC--CS-SC
T ss_pred cceecChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc--CC-cc
Confidence 4455667889999999999 8888 776 788888899999999966666 8899999999999999999996 54 77
Q ss_pred hhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCC-CceEEeeccccCCce
Q 039403 82 SKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPR-LQVLKLKRNSYLGRK 154 (249)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~ 154 (249)
|..+..+++|+.|+++++. +..++..+.. +++|+.|++++|.+++..+..+..+.. ...+++.+|.+.+..
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 8899999999999999988 8888778888 999999999999998666665543321 123556666665533
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.34 E-value=3.3e-14 Score=124.67 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=124.0
Q ss_pred cccchhhhhcccccee-eecCcccCCC-CCCcCCCCccccccccccCC--CCcchhcCCCcccCeEEE------------
Q 039403 7 DQSPEDIWMMQKLMHL-NFGCITLPAP-PKNYFSSLKNLIFISALHPS--SCTPDILGRLPSVQTLRI------------ 70 (249)
Q Consensus 7 ~~lp~~i~~l~~L~~L-l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l------------ 70 (249)
..+|..+..+++|++| +++| .+... +...+..+++|++|++.++- ..++.....+++|+.|++
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 3456566677888888 7777 44322 12224456667766644432 112222223555555555
Q ss_pred ----------------------ecCccccccchhhhhc-CCCCCcEEEEe--c---CCCceeeee------cCCCCCCCc
Q 039403 71 ----------------------SGNLSCYHSGVSKSLC-ELHKLECLKLV--N---ESKLSRMVL------SEYQFPPSL 116 (249)
Q Consensus 71 ----------------------~~~~~~~~~~~~~~l~-~l~~L~~L~l~--~---~~~L~~l~l------~~~~~~~~L 116 (249)
+.+. .....+..+. .+++|+.|+++ + ...+...+. .+.. +++|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~--l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L 434 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQ--MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDL 434 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESC--CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTC
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCC--cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCc
Confidence 3332 2222222232 46777777776 2 111332211 1455 7899
Q ss_pred cEEEEEcccCCCCCcccccC-CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCccc--ceeccCcccccccce
Q 039403 117 IQLSLSNTELMEDPMPMLER-LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLD--EWTMGAGALPKLESL 193 (249)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 193 (249)
+.|++++ .+++..+..+.. +++|+.|++++|.+++...... ...+++|+.|++++|. ++ .+......+++|+.|
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSL 511 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEE
Confidence 9999977 555445555555 8999999999998866542222 3568999999999964 45 233345578999999
Q ss_pred eeccCcCcCCCcccc-ccCcCccEEEccCCc
Q 039403 194 IVNPCAYLRKLPEEL-WCIKSLRKLDLHWPQ 223 (249)
Q Consensus 194 ~l~~~~~~~~l~~~l-~~l~~L~~l~l~~~~ 223 (249)
++++|+++..-...+ ..++.++...+..+.
T Consensus 512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred eeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 999999743222223 456777666665553
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=4.2e-15 Score=112.59 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=82.9
Q ss_pred hhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCC
Q 039403 81 VSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGS 160 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 160 (249)
+|..+..+++|+.|+++++. +..++ .+.. +++|+.|++++|.++ ..+..+..+++|+.|++++|.+.+- + . +
T Consensus 40 l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~-~-~ 111 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN-IEKIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--S-G-I 111 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE-ESCCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--H-H-H
T ss_pred hhHHHhcCCCCCEEECCCCC-Ccccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--C-c-c
Confidence 33466666666666666655 55544 5555 667777777777766 4555555566777777777776551 2 3 5
Q ss_pred CCCCcccEEEeccCCcccceec--cCcccccccceeeccCcCcCCCcc----------ccccCcCccEEE
Q 039403 161 GGFPELKVLHLKSMYWLDEWTM--GAGALPKLESLIVNPCAYLRKLPE----------ELWCIKSLRKLD 218 (249)
Q Consensus 161 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l~~----------~l~~l~~L~~l~ 218 (249)
..+++|++|++++ +.++.++. .+..+++|++|++++|++.+..|. .+..+++|+.+|
T Consensus 112 ~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5667777777777 56665443 456677788888877776554332 256778888776
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=7.9e-13 Score=98.06 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=94.7
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCC-CCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCEL-HKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERL 137 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 137 (249)
+.++.+|+.|++++|. .. .++. +..+ ++|+.|+++++. ++.+ ..+.. +++|+.|++++|.+++..+..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~--l~-~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK--IP-VIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPL-LRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSC--CC-SCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCC-CSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCCC--Cc-hhHH-hhhcCCCCCEEECCCCC-CCcc-ccccc-CCCCCEEECCCCcccccCcchhhcC
Confidence 3456777788887775 33 3333 3333 478888888876 7766 36777 8888889998888874322334788
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc----CcccccccceeeccCcC
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG----AGALPKLESLIVNPCAY 200 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 200 (249)
++|++|++++|.+........ +..+++|+.|++++ |.++.++.. +..+++|+.|++++|..
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDP-LASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 899999999888754221125 66788999999998 677777664 67889999999998874
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=9.5e-12 Score=93.65 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=52.2
Q ss_pred CCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccE
Q 039403 89 HKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKV 168 (249)
Q Consensus 89 ~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 168 (249)
++++.|+++++. ++.++-.+.. +++|+.|++++|.++...+..+..+++|+.|++++|.+.+.. +.. +..+++|++
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~-f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRT-FDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTT-TTTCTTCCE
T ss_pred CCCCEEECCCCc-CchhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHH-hCCCCCCCE
Confidence 345555555544 4444334444 555555555555555433344555555555555555544322 223 444555555
Q ss_pred EEeccCCcccceecc-CcccccccceeeccCcC
Q 039403 169 LHLKSMYWLDEWTMG-AGALPKLESLIVNPCAY 200 (249)
Q Consensus 169 L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 200 (249)
|++++ |.++.++.. +..+++|+.|++++|++
T Consensus 107 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 107 LSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555 444444432 33455555555555554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.3e-11 Score=91.51 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=47.7
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceecc-Ccccccccce
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTMG-AGALPKLESL 193 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 193 (249)
+++.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|++++ +.++.++.. +..+++|+.|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGV-FDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhH-ccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence 4455555555444322233444555555555555443321 222 34455555555555 344444332 3445555555
Q ss_pred eeccCcCcCCCcc-ccccCcCccEEEccCC
Q 039403 194 IVNPCAYLRKLPE-ELWCIKSLRKLDLHWP 222 (249)
Q Consensus 194 ~l~~~~~~~~l~~-~l~~l~~L~~l~l~~~ 222 (249)
++++|.+.+ +|. .+..+++|+++++++|
T Consensus 106 ~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred ECcCCcceE-eCHHHhcCCcccCEEEecCC
Confidence 555555432 222 2344555555555555
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=9e-12 Score=93.77 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=87.8
Q ss_pred cccccccCC-CCcchhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEE
Q 039403 44 IFISALHPS-SCTPDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSL 121 (249)
Q Consensus 44 ~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l 121 (249)
+.++..+.. ..+|..+. ++|+.|++++|. . ..+|..+..+++|+.|+++++. ++.+.. .+.. +++|+.|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~--i-~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~-l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ--F-TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSN-MTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC--C-CSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc--C-chhHHHhhcccCCCEEECCCCc-CCEeCHhHccC-CCCCCEEEC
Confidence 345533333 56665443 578888888884 3 3566778888888888888877 776664 5677 888888888
Q ss_pred EcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccC
Q 039403 122 SNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSM 174 (249)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 174 (249)
++|.++...+..+..+++|+.|++++|.+.... +.. +..+++|+.|+++++
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~-~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP-EGA-FNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC-TTT-TTTCTTCCEEECCSS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC-hhh-hhcCccccEEEeCCC
Confidence 888887666667888888888888888876432 334 667788888888883
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1.6e-11 Score=91.04 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=64.3
Q ss_pred ccccccccccCC-CCcch-hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCcc
Q 039403 41 KNLIFISALHPS-SCTPD-ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLI 117 (249)
Q Consensus 41 ~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~ 117 (249)
++|++|++.++. ..++. .+..+++|++|++++|. .....+..+..+++|+.|+++++. +..+.. .+.. +++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~-l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDK-LTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhC-CcccC
Confidence 456666644433 33333 34556666666666664 333333345566666666666655 555443 3455 67777
Q ss_pred EEEEEcccCCCCCcccccCCCCCceEEeeccccCC
Q 039403 118 QLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG 152 (249)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 152 (249)
.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77777777764333445677788888888777654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.1e-13 Score=104.71 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=108.2
Q ss_pred ccccchhhhhcccccee-eecCcccCCCCCC------cCCCCccccccccccCC-CCcchhcCCCcccCeEEEecCcccc
Q 039403 6 IDQSPEDIWMMQKLMHL-NFGCITLPAPPKN------YFSSLKNLIFISALHPS-SCTPDILGRLPSVQTLRISGNLSCY 77 (249)
Q Consensus 6 l~~lp~~i~~l~~L~~L-l~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (249)
+.+..+.+...+.++.+ +..+ .+.+.+|. .++.+++|++|++.++. ..+| .+.++++|+.|++++|. .
T Consensus 7 ~~~~~~~~~~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~--l 82 (198)
T 1ds9_A 7 IKDAIRIFEERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL--I 82 (198)
T ss_dssp HHHHHHHHHHTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE--E
T ss_pred HHHHHHHHHhcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC--c
Confidence 34444556666777777 6666 66666665 67778888888865555 5566 67778888888888884 3
Q ss_pred ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCC-cccccCCCCCceEEeeccccCCcee-
Q 039403 78 HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDP-MPMLERLPRLQVLKLKRNSYLGRKL- 155 (249)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~- 155 (249)
..+|..+..+++|+.|+++++. +..++ .+.. +++|+.|++++|.+++.. +..+..+++|++|++.+|.+.+...
T Consensus 83 -~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 83 -KKIENLDAVADTLEELWISYNQ-IASLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -CSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -ccccchhhcCCcCCEEECcCCc-CCcCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 3566666677888888888866 66654 5666 778888888888887322 2467888889999998887754320
Q ss_pred --------eeeCCCCCCcccEEE
Q 039403 156 --------ACAGSGGFPELKVLH 170 (249)
Q Consensus 156 --------~~~~~~~~~~L~~L~ 170 (249)
... +..+++|+.|+
T Consensus 159 ~~~~~~~~~~~-~~~l~~L~~Ld 180 (198)
T 1ds9_A 159 NNATSEYRIEV-VKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHH-HHHCSSCSEEC
T ss_pred ccchHHHHHHH-HHhCCCcEEEC
Confidence 112 34677888886
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.3e-10 Score=94.59 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=58.6
Q ss_pred CCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCccc-EEEeccCCccccee-ccCcccccc
Q 039403 113 PPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELK-VLHLKSMYWLDEWT-MGAGALPKL 190 (249)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~~~~L 190 (249)
+++|+.++++.|.++......+..|++|+.+++..+ +.. ..... |..|++|+ .+.+.. .++.++ ..+..|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 456667777666665334455666777777777654 221 22334 56666776 777665 455554 345566777
Q ss_pred cceeeccCcCcCCCccccccCcCccEEE
Q 039403 191 ESLIVNPCAYLRKLPEELWCIKSLRKLD 218 (249)
Q Consensus 191 ~~L~l~~~~~~~~l~~~l~~l~~L~~l~ 218 (249)
+.+++.++.+..--+..+..+++|+.+.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777766664432223556666666654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=2.7e-10 Score=83.88 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEE
Q 039403 91 LECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLH 170 (249)
Q Consensus 91 L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 170 (249)
.+.++++++. ++.++..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.+.. +.. +..+++|++|+
T Consensus 11 ~~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~-f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGV-FDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTT-TTTCTTCCEEE
T ss_pred CCEEEeCCCC-cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhh-ccCCCCCCEEE
Confidence 3455555555 55443222 345666666666666544555666666666666666665422 333 45566666666
Q ss_pred eccCCcccceecc-CcccccccceeeccCcCcC
Q 039403 171 LKSMYWLDEWTMG-AGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 171 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 202 (249)
+++ |.++.++.. +..+++|+.|++++|++..
T Consensus 85 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCC-CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 666 555555543 5566666666666666543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=3.3e-10 Score=83.71 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=57.2
Q ss_pred cEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEe
Q 039403 92 ECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHL 171 (249)
Q Consensus 92 ~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 171 (249)
+.++++++. +..++..+ .+.|+.|++++|.+++..+..+..+++|++|++++|.+.+-. +.. +..+++|++|++
T Consensus 15 ~~l~~~~n~-l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~-~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGV-FDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTTCTTCCEEEC
T ss_pred cEEEeCCCC-CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhH-hCCcchhhEEEC
Confidence 445555544 44443222 345666666666665444555666666666666666655421 223 345666666666
Q ss_pred ccCCcccceecc-CcccccccceeeccCcCc
Q 039403 172 KSMYWLDEWTMG-AGALPKLESLIVNPCAYL 201 (249)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 201 (249)
++ |.++.++.. +..+++|++|++++|++.
T Consensus 89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 ND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66 555555543 455666666666666644
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=5.1e-10 Score=82.68 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-c
Q 039403 32 PPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-S 108 (249)
Q Consensus 32 ~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~ 108 (249)
.+|..+. ++|++|++.++. ..+ |..+.++++|+.|++++|. .....+..+..+++|+.|+++++. ++.++. .
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 100 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK--LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGA 100 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC--CCccChhHhCCcchhhEEECCCCc-cceeCHHH
Confidence 4555443 566666644443 333 4455666666666666664 333222334566666666666665 665554 3
Q ss_pred CCCCCCCccEEEEEcccCC
Q 039403 109 EYQFPPSLIQLSLSNTELM 127 (249)
Q Consensus 109 ~~~~~~~L~~L~l~~~~~~ 127 (249)
+.. +++|+.|++++|.+.
T Consensus 101 ~~~-l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 101 FDN-LKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTT-CTTCSEEECCSSCBC
T ss_pred hcc-ccCCCEEEeCCCCcc
Confidence 556 777777777777765
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=6.5e-10 Score=81.78 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred cee-eecCcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEE
Q 039403 20 MHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKL 96 (249)
Q Consensus 20 ~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (249)
+.+ ++++ .+. .+|..+. ++|++|++.++. ..+ +..+.++++|+.|++++|. .....+..+..+++|+.|++
T Consensus 12 ~~l~~s~n-~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGK-SLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTS-CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC--cCccChhhccCCCCCCEEEC
Confidence 344 4444 333 3454442 556666644444 333 4445666666666666664 43333334556666666666
Q ss_pred ecCCCceeeee-cCCCCCCCccEEEEEcccCCC
Q 039403 97 VNESKLSRMVL-SEYQFPPSLIQLSLSNTELME 128 (249)
Q Consensus 97 ~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~ 128 (249)
+++. ++.+.. .+.. +++|+.|++++|.+..
T Consensus 86 ~~N~-l~~~~~~~~~~-l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDN-LKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSC-CCCCCTTTTTT-CTTCCEEECCSSCBCT
T ss_pred CCCc-cCEeCHHHhcC-CCCCCEEEeCCCCCCC
Confidence 6655 655554 3556 6777777777777653
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=6.3e-12 Score=104.12 Aligned_cols=156 Identities=19% Similarity=0.092 Sum_probs=73.7
Q ss_pred CcccCeEEEecCccccccchhh----hhc-CCCCCcEEEEecCCCceeeee--cCCCCCCCccEEEEEcccCCCCCcccc
Q 039403 62 LPSVQTLRISGNLSCYHSGVSK----SLC-ELHKLECLKLVNESKLSRMVL--SEYQFPPSLIQLSLSNTELMEDPMPML 134 (249)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~----~l~-~l~~L~~L~l~~~~~L~~l~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~ 134 (249)
++.|+.|++++|. ....... .+. ..++|+.|+++++. +..... .... +++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHH-HHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHH-HHhccHhhcCCCCCCHHHHHHH
Confidence 3456666666664 3322222 222 12466666666644 322111 1112 3456666666666543222222
Q ss_pred -----cCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCc
Q 039403 135 -----ERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYL 201 (249)
Q Consensus 135 -----~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 201 (249)
...++|+.|++++|.+++.. +... +..+++|++|++++ |.++ .+...+...+.|+.|++++|.+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 23455666666666554321 1112 23455666666666 3444 12333444456666666666654
Q ss_pred C----CCccccccCcCccEEEccCCc
Q 039403 202 R----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 202 ~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
. .+...+..++.|++|++++|.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3 123334445666666666664
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=3.3e-08 Score=82.60 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCC-----CCCcccccCCCCCceEEeeccccCCceeeeeCCCC
Q 039403 89 HKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELM-----EDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGG 162 (249)
Q Consensus 89 ~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (249)
.+|+.+.+.. . ++.+.. +|.. |++|+.+.+..+... ......+..|++|+.+.+.. .+.. ..... +..
T Consensus 248 ~~L~~i~lp~-~-i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~a-F~~ 321 (401)
T 4fdw_A 248 SGITTVKLPN-G-VTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGL-LGG 321 (401)
T ss_dssp CCCSEEEEET-T-CCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTT-TTT
T ss_pred CCccEEEeCC-C-ccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-Ehhhh-hcC
Confidence 3455555422 1 333332 6677 888888888776543 12335567788888888763 2322 11334 677
Q ss_pred CCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCc-CccEEEccCCc
Q 039403 163 FPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIK-SLRKLDLHWPQ 223 (249)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~l~l~~~~ 223 (249)
|.+|+.+.+.. .++.+.. .+..| +|+.+.+.+|....-....+..++ .++.+.+..+.
T Consensus 322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 88888888864 3665554 45567 888888888765432233444553 67777777664
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.2e-08 Score=82.98 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=81.0
Q ss_pred CCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCc-eEEeeccccCCceeeeeCCCCCC
Q 039403 87 ELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQ-VLKLKRNSYLGRKLACAGSGGFP 164 (249)
Q Consensus 87 ~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~ 164 (249)
.+++|+.+++..+. ++.+.- .|.. |++|+.+++..+ +.......+..|++|+ .+.+.. .+.. ..... |..|+
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~ 297 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCD 297 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCT
T ss_pred hcCCCeEEECCCCC-cceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCc
Confidence 37899999999877 787776 7888 999999999987 5544557789999999 999976 4432 22446 88999
Q ss_pred cccEEEeccCCcccceec-cCcccccccceee
Q 039403 165 ELKVLHLKSMYWLDEWTM-GAGALPKLESLIV 195 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 195 (249)
+|+.+++.. +.++.++. .+..|++|+.+..
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 999999988 78888776 5678899988753
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=2.7e-09 Score=87.82 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=89.2
Q ss_pred CCCcccCeEEEecCccc---c----ccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcc
Q 039403 60 GRLPSVQTLRISGNLSC---Y----HSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMP 132 (249)
Q Consensus 60 ~~l~~L~~L~l~~~~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~ 132 (249)
..+++|+.|.+...... . ...+...+..+|+|+.|++.++..++ +. . .. +++|+.|++..|.+......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~-~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG-K-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC-S-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec-c-cc-CCCCcEEEEecCCCChHHHH
Confidence 34567777776543200 0 12344556677788888887642121 11 1 13 56788888887776543334
Q ss_pred ccc--CCCCCceEEeec--cccCCce-e---eee-CCCCCCcccEEEeccCCccc-ceec---cCcccccccceeeccCc
Q 039403 133 MLE--RLPRLQVLKLKR--NSYLGRK-L---ACA-GSGGFPELKVLHLKSMYWLD-EWTM---GAGALPKLESLIVNPCA 199 (249)
Q Consensus 133 ~~~--~l~~L~~L~l~~--~~~~~~~-~---~~~-~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~L~~L~l~~~~ 199 (249)
.+. .+++|+.|++.. +...+.. . ... ....+++|++|.+.+| .++ .... ....+++|++|+|+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 443 677888888753 1111110 0 011 0134788888888774 433 1211 12357788888888877
Q ss_pred CcC----CCccccccCcCccEEEccCCc
Q 039403 200 YLR----KLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 200 ~~~----~l~~~l~~l~~L~~l~l~~~~ 223 (249)
+.+ .++..+..+++|++|++++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 654 234445567888888888875
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=1.2e-07 Score=79.22 Aligned_cols=129 Identities=9% Similarity=0.115 Sum_probs=81.4
Q ss_pred hhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCC----ceeeee
Q 039403 84 SLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLG----RKLACA 158 (249)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~ 158 (249)
.|..+++|+.+.+.. . ++.+.. +|.. .+|+.+.+..+ ++......+..|++|+.+.+.++.... ......
T Consensus 221 aF~~~~~L~~l~l~~-~-l~~I~~~aF~~--~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE-N-VSTIGQEAFRE--SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTCTTCCCEECCT-T-CCEECTTTTTT--CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred HhhCCCCCCEEecCC-C-ccCcccccccc--CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 445555555555543 1 333332 2322 35666666432 332335667888999999998765431 122335
Q ss_pred CCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCC-ccccccCcCccEEEccCCc
Q 039403 159 GSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKL-PEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~l~l~~~~ 223 (249)
+..|++|+.+.+.. .++.+.. .+..|.+|+.+.+..+ +. .+ ...+..+ +|+.+.+.++.
T Consensus 296 -F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 -LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred -hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 77889999999884 4676665 4568899999999655 32 33 3467778 99999999874
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=2.6e-09 Score=87.92 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=86.9
Q ss_pred chhcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee---cCCCCCCCccEEEEEcc--cCCCC-
Q 039403 56 PDILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL---SEYQFPPSLIQLSLSNT--ELMED- 129 (249)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l---~~~~~~~~L~~L~l~~~--~~~~~- 129 (249)
...+..+|+|+.|+++++. .. .++. + .+++|+.|++..+. +..-.+ .... +|+|+.|+++.+ ...+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~--~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~-lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTN--NL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSD-LPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp HHHHHTCTTCCEEEEECCB--TC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSB-CTTCCEEEEECBCGGGTCCS
T ss_pred HHHHhcCCCCcEEEEeCCC--Cc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHcc-CCCCcEEEEeccccccccch
Confidence 3444556666677666652 11 2222 2 25666666666533 221111 1124 667777776531 11111
Q ss_pred Cc----ccc--cCCCCCceEEeeccccCCcee--eeeCCCCCCcccEEEeccCCcccc-----eeccCcccccccceeec
Q 039403 130 PM----PML--ERLPRLQVLKLKRNSYLGRKL--ACAGSGGFPELKVLHLKSMYWLDE-----WTMGAGALPKLESLIVN 196 (249)
Q Consensus 130 ~~----~~~--~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~ 196 (249)
.. ..+ ..+++|++|++.+|.+.+... ... ...+++|++|+++. +.++. ++..+..+++|+.|+++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECC
Confidence 01 122 347889999998877654221 112 23578999999987 66662 34444567899999999
Q ss_pred cCcCcCCCcccccc-CcCccEEEccCCc
Q 039403 197 PCAYLRKLPEELWC-IKSLRKLDLHWPQ 223 (249)
Q Consensus 197 ~~~~~~~l~~~l~~-l~~L~~l~l~~~~ 223 (249)
+|.++......+.. + -..++++.+.
T Consensus 316 ~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99866432222222 2 3567888876
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.7e-08 Score=80.53 Aligned_cols=99 Identities=19% Similarity=0.042 Sum_probs=53.7
Q ss_pred EEEEcc-cCCCCCcccccCCCCCceEEeec-cccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceee
Q 039403 119 LSLSNT-ELMEDPMPMLERLPRLQVLKLKR-NSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIV 195 (249)
Q Consensus 119 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 195 (249)
++.+++ .++ ..|. +..+++|+.|++++ |.+.+.. +.. ++.+++|+.|++++ |.++.++. .+..+++|+.|+|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~-~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLE-LRD-LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEEC-GGG-SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcC-hhH-hccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeC
Confidence 445554 454 3455 66666666666664 5554322 344 55666666666666 45555443 3456666666666
Q ss_pred ccCcCcCCCccccccCcCccEEEccCCc
Q 039403 196 NPCAYLRKLPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 196 ~~~~~~~~l~~~l~~l~~L~~l~l~~~~ 223 (249)
++|.+.+ +|..+.....|+.|++.+|+
T Consensus 88 ~~N~l~~-~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNALES-LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSCCSC-CCSTTTCSCCCCEEECCSSC
T ss_pred CCCccce-eCHHHcccCCceEEEeeCCC
Confidence 6666543 33322222226666666653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=1.4e-08 Score=83.16 Aligned_cols=91 Identities=20% Similarity=0.140 Sum_probs=62.5
Q ss_pred Cccccchhhhhcccccee-eec-CcccCCCCCCcCCCCccccccccccCC-CCc-chhcCCCcccCeEEEecCccccccc
Q 039403 5 YIDQSPEDIWMMQKLMHL-NFG-CITLPAPPKNYFSSLKNLIFISALHPS-SCT-PDILGRLPSVQTLRISGNLSCYHSG 80 (249)
Q Consensus 5 ~l~~lp~~i~~l~~L~~L-l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (249)
.+++||. +..+++|++| +++ | .+.+..+..++.+++|++|++.++. ..+ +..|.++++|+.|+|++|. +...
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA--LESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC--CSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc--ccee
Confidence 7888888 8888888888 775 5 7765555677888888888855555 433 3456788888888888885 4432
Q ss_pred hhhhhcCCCCCcEEEEecCC
Q 039403 81 VSKSLCELHKLECLKLVNES 100 (249)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~ 100 (249)
.+..+..++ |+.|++.++.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSC
T ss_pred CHHHcccCC-ceEEEeeCCC
Confidence 233344444 8888887755
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.70 E-value=8.6e-11 Score=97.31 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=100.1
Q ss_pred CccccccccccCC-C-----CcchhcC-CCcccCeEEEecCccccccchhhhh-cCCCCCcEEEEecCCCceeeee----
Q 039403 40 LKNLIFISALHPS-S-----CTPDILG-RLPSVQTLRISGNLSCYHSGVSKSL-CELHKLECLKLVNESKLSRMVL---- 107 (249)
Q Consensus 40 l~~L~~L~l~~~~-~-----~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~L~~l~l---- 107 (249)
+++|+.|++.++. + .+...+. ..++|+.|++++|. ........+ ..+++|+.|+++++. +.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 4567777755555 2 1223333 33688888888886 443322222 235678888888866 543322
Q ss_pred -cC-CCCCCCccEEEEEcccCCCC----CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc
Q 039403 108 -SE-YQFPPSLIQLSLSNTELMED----PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 108 -~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
.+ .. .++|+.|++++|.+++. ....+..+++|++|++++|.+.+.. +... +..+++|++|++++ |.++
T Consensus 148 ~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~-N~i~ 224 (372)
T 3un9_A 148 DLLLHD-QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAY-NGAG 224 (372)
T ss_dssp HHHHST-TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCS-SCCC
T ss_pred HHHHhc-CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCC-CCCC
Confidence 12 34 56789999999987642 2334467888999999988876432 1223 45667899999998 5665
Q ss_pred -----ceeccCcccccccceeeccCcCcC
Q 039403 179 -----EWTMGAGALPKLESLIVNPCAYLR 202 (249)
Q Consensus 179 -----~~~~~~~~~~~L~~L~l~~~~~~~ 202 (249)
.+...+...+.|++|+|++|.+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 233344466889999999998754
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=5.7e-08 Score=71.15 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=41.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc-cCCceeeeeCCCC----CCcccEEEeccCCcccc-eeccCcccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS-YLGRKLACAGSGG----FPELKVLHLKSMYWLDE-WTMGAGALP 188 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~-~~~~~~~~~ 188 (249)
.|+.|++++|.+++.....+..|++|++|++++|. +++.. ... +.. +++|++|++++|..+++ -...+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46666666666555455555566666666666553 33322 111 222 23455555555555551 112233455
Q ss_pred cccceeeccCc
Q 039403 189 KLESLIVNPCA 199 (249)
Q Consensus 189 ~L~~L~l~~~~ 199 (249)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555554
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=1.2e-07 Score=69.49 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=65.4
Q ss_pred CCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccc-eeccCcc----cccccceeeccCc-CcCCCccccccC
Q 039403 138 PRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDE-WTMGAGA----LPKLESLIVNPCA-YLRKLPEELWCI 211 (249)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----~~~L~~L~l~~~~-~~~~l~~~l~~l 211 (249)
..|+.|+++++.++... ... +..|++|++|++++|..+++ -...+.. +++|++|+|++|. +++.=-..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~G-L~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-FDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGG-GGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHH-HHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46999999999987766 455 77899999999999988882 2222333 4689999999997 554222356789
Q ss_pred cCccEEEccCCc
Q 039403 212 KSLRKLDLHWPQ 223 (249)
Q Consensus 212 ~~L~~l~l~~~~ 223 (249)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=1.5e-07 Score=70.08 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCCccEEEEEcc-cCCCC----CcccccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----c
Q 039403 113 PPSLIQLSLSNT-ELMED----PMPMLERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----E 179 (249)
Q Consensus 113 ~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~ 179 (249)
.++|+.|++++| .+... +...+...++|++|++++|.+.+.. +... +...++|++|++++ +.++ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~-N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVES-NFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCS-SCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcC-CcCCHHHHHH
Confidence 445555555555 54422 2233445566777777666664432 0112 33446677777777 4555 2
Q ss_pred eeccCcccccccceee--ccCcCcCC----CccccccCcCccEEEccCCc
Q 039403 180 WTMGAGALPKLESLIV--NPCAYLRK----LPEELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 180 ~~~~~~~~~~L~~L~l--~~~~~~~~----l~~~l~~l~~L~~l~l~~~~ 223 (249)
+...+...+.|++|++ ++|.+... +.+.+...+.|++|++++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4445556677888888 77776542 44556667889999998886
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.95 E-value=6.2e-07 Score=66.66 Aligned_cols=117 Identities=10% Similarity=0.027 Sum_probs=72.0
Q ss_pred chhcCCCcccCeEEEecC-cccccc----chhhhhcCCCCCcEEEEecCCCceeeee-----cCCCCCCCccEEEEEccc
Q 039403 56 PDILGRLPSVQTLRISGN-LSCYHS----GVSKSLCELHKLECLKLVNESKLSRMVL-----SEYQFPPSLIQLSLSNTE 125 (249)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~-~~~~~~----~~~~~l~~l~~L~~L~l~~~~~L~~l~l-----~~~~~~~~L~~L~l~~~~ 125 (249)
...+...+.|++|++++| . ... .+...+...++|++|+++++. +..-.. .+.. .++|++|++++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~--i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~-n~~L~~L~L~~N~ 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKV-NNTLKSLNVESNF 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHH-CSSCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEecCCCC--CCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHh-CCCcCEEECcCCc
Confidence 344556777777777776 4 322 234455666777777777754 332111 3344 5678888888888
Q ss_pred CCCC----CcccccCCCCCceEEe--eccccCCce---eeeeCCCCCCcccEEEeccCCccc
Q 039403 126 LMED----PMPMLERLPRLQVLKL--KRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD 178 (249)
Q Consensus 126 ~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~ 178 (249)
+++. +...+...+.|++|++ .+|.+.... +... +...++|++|++++ +.++
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~-n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHF-TQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCC-SSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccC-CCCC
Confidence 7643 2345566778888888 777776543 1122 34567888888887 4444
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.95 E-value=0.00025 Score=58.79 Aligned_cols=196 Identities=12% Similarity=0.026 Sum_probs=106.4
Q ss_pred hhhhcccccee-eecCcccCCCCCCcCCCCccccccccccCC-CCcc-hhcCCCcccCeEEEecCccc------------
Q 039403 12 DIWMMQKLMHL-NFGCITLPAPPKNYFSSLKNLIFISALHPS-SCTP-DILGRLPSVQTLRISGNLSC------------ 76 (249)
Q Consensus 12 ~i~~l~~L~~L-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~------------ 76 (249)
++..|++|+.+ +..+ ....-...+..+.+|+.+.+ ..+ ..+. ..+.++..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l-~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKL-PRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCC-CTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEc-CCCceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 47778888888 6443 22122334566777887773 333 2222 23455666666655443200
Q ss_pred -------cccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeecc
Q 039403 77 -------YHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRN 148 (249)
Q Consensus 77 -------~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (249)
....-...+..+.+++.+.+..+ ...+.. .+.. +..++.+......+. ...+..+.+|+.+.+..+
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~-~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYN-CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTT-CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred eEEECCCceecccccccccccceeEEcCCC--cceeecccccc-ccccceeccCceeec---cccccccccccccccccc
Confidence 00000112333444444444331 111111 3444 555555555443322 234566778888887543
Q ss_pred ccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCc-cccccCcCccEEEccCCc
Q 039403 149 SYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQ 223 (249)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~ 223 (249)
+.. ..... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..+ +. .+. ..+..|.+|+.+++..+-
T Consensus 308 -i~~-I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 308 -VKF-IGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp -CCE-ECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG
T ss_pred -cce-echhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC
Confidence 221 11334 67788899988864 4666654 4568889999988665 22 333 367788999999887664
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00044 Score=57.31 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=72.3
Q ss_pred cCCCCCCCccEEEEEcccCCCCCcccccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcc
Q 039403 108 SEYQFPPSLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGA 186 (249)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 186 (249)
+|.. |..|+.+.+..+... .....+..|++|+.+.+.. .+.. ..... +..|.+|+.+.+.. .++.+.. .+..
T Consensus 260 aF~~-c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~-I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDS-CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITE-LPESV-FAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTT-CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCE-ECTTT-TTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred eeee-cccccEEecccccce-ecCcccccccccccccCCC-cccc-cCcee-ecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 4555 666777766543221 2234566778888887753 2221 11334 77889999999875 4666654 4668
Q ss_pred cccccceeeccCcCcCCCc-cccccCcCccEEEccCCcHHH
Q 039403 187 LPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHWPQTEL 226 (249)
Q Consensus 187 ~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~~~~~~ 226 (249)
|.+|+.+.+..+ +. .+. ..+.+|.+|+.+++.++....
T Consensus 333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh
Confidence 999999999654 22 343 467889999999999986443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00017 Score=59.81 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=93.5
Q ss_pred cCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeeecCCCCCCCccEEEEEcccCCCCCcccccCCC
Q 039403 59 LGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVLSEYQFPPSLIQLSLSNTELMEDPMPMLERLP 138 (249)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 138 (249)
+.++.+++.+.+..+. .......+..+..++.+...... +. ...+.. +.+|+.+.+..+ +..-....+..|.
T Consensus 249 f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~-i~--~~~F~~-~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVI-VP--EKTFYG-CSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSE-EC--TTTTTT-CTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccceeEEcCCCc---ceeeccccccccccceeccCcee-ec--cccccc-cccccccccccc-cceechhhhcCCC
Confidence 3456677777776542 22223456778888887765521 11 115667 889999988654 3323346678899
Q ss_pred CCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCccccccCcCccEE
Q 039403 139 RLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLPEELWCIKSLRKL 217 (249)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~l 217 (249)
+|+.+.+..+ +.. ..... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..+- ..+...+.++++|+.+
T Consensus 321 ~L~~i~lp~~-v~~-I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 321 SLVSIDLPYL-VEE-IGKRS-FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCE-ECTTT-TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEEE
T ss_pred CCCEEEeCCc-ccE-EhHHh-ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcEE
Confidence 9999998643 321 21345 77899999999976 3666654 46689999999997653 2234467778888765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=9.2e-06 Score=63.70 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCCCCceEEeeccccCCce-eeeeCCCCCCcccEEEeccCCcccceeccCcccc--cccceeeccCcCcCCCc-------
Q 039403 136 RLPRLQVLKLKRNSYLGRK-LACAGSGGFPELKVLHLKSMYWLDEWTMGAGALP--KLESLIVNPCAYLRKLP------- 205 (249)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~l~------- 205 (249)
.+++|+.|++++|.+.+-. ++.. +..+++|+.|++++ |.++++. .+..+. +|+.|++++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4566666666666665411 0122 33566667777766 5555442 223233 67777777777655443
Q ss_pred cccccCcCccEEE
Q 039403 206 EELWCIKSLRKLD 218 (249)
Q Consensus 206 ~~l~~l~~L~~l~ 218 (249)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244566666665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=2.1e-05 Score=61.63 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=30.9
Q ss_pred hhcccccee-eecCcccCC--CCCCcCCCCccccccccccCC-CCcchhcCCCc--ccCeEEEecCc
Q 039403 14 WMMQKLMHL-NFGCITLPA--PPKNYFSSLKNLIFISALHPS-SCTPDILGRLP--SVQTLRISGNL 74 (249)
Q Consensus 14 ~~l~~L~~L-l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~ 74 (249)
..+++|+.| +++| .+.+ .++..+..+++|+.|++.++. ..+ ..+..+. +|++|++++|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 345666666 6666 5543 334444556666666644443 222 2222222 66666666664
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.0019 Score=53.44 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=49.5
Q ss_pred ccCCCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCC-ccccccC
Q 039403 134 LERLPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKL-PEELWCI 211 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l 211 (249)
+..|..|+.+.+..... ...... +..|+.|+.+.+. +.++.++. .+..|.+|+.+.+..+ + ..+ ...+..|
T Consensus 261 F~~c~~L~~i~lp~~~~--~I~~~a-F~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C 333 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV--SIGTGA-FMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGC 333 (394)
T ss_dssp TTTCSSCCEEECCTTCC--EECTTT-TTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTC
T ss_pred eeecccccEEecccccc--eecCcc-cccccccccccCC--CcccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCC
Confidence 44556666666643221 111223 5567777777775 34566654 3457888999888654 2 223 2357788
Q ss_pred cCccEEEccCC
Q 039403 212 KSLRKLDLHWP 222 (249)
Q Consensus 212 ~~L~~l~l~~~ 222 (249)
.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s 344 (394)
T 4gt6_A 334 EQLERIAIPSS 344 (394)
T ss_dssp TTCCEEEECTT
T ss_pred CCCCEEEECcc
Confidence 99999988654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.015 Score=47.69 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=34.0
Q ss_pred CCCCCcccEEEeccCCcccceec-cCcccccccceeeccCcCcCCCc-cccccCcCccEEEccC
Q 039403 160 SGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNPCAYLRKLP-EELWCIKSLRKLDLHW 221 (249)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~l~l~~ 221 (249)
+..|.+|+.+.+.+ +.++.+.. .+..|.+|+.+.+..+ + ..+. ..+.+|.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-cccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEECC
Confidence 55667777777765 45555543 3456677777777543 1 1222 2455667777666643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.63 E-value=0.011 Score=48.54 Aligned_cols=129 Identities=8% Similarity=0.035 Sum_probs=74.8
Q ss_pred hcCCCcccCeEEEecCccccccchhhhhcCCCCCcEEEEecCCCceeeee-cCCCCCCCccEEEEEcccCCCCCcccccC
Q 039403 58 ILGRLPSVQTLRISGNLSCYHSGVSKSLCELHKLECLKLVNESKLSRMVL-SEYQFPPSLIQLSLSNTELMEDPMPMLER 136 (249)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~l~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 136 (249)
.+..+.+|+.+.+... ........+..+.+|+.+.+..+ ++.+.- .+.. +..|+.+.+..+ +.......+..
T Consensus 212 ~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~-~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 212 GFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQN-CTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp TTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTT-CTTCCEEEECCC-CSEECTTTTTT
T ss_pred ccccccccceeeeccc---eeEEccccccCCccceEEEcCCC--ccEeCccccce-eehhcccccccc-ceecccccccc
Confidence 3455667777776554 22222345666777777777542 343332 5555 777777776543 22123345667
Q ss_pred CCCCceEEeeccccCCceeeeeCCCCCCcccEEEeccCCcccceec-cCcccccccceeecc
Q 039403 137 LPRLQVLKLKRNSYLGRKLACAGSGGFPELKVLHLKSMYWLDEWTM-GAGALPKLESLIVNP 197 (249)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 197 (249)
|.+|+.+.+.++.+..-. ... +..|.+|+.+.+.. .++.+.. .+..|.+|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~-~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLE-PRV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEEC-TTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceeh-hhh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 777888777655443211 334 66777788887764 3555554 355777777777643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.48 E-value=0.00037 Score=51.87 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred ccCCCCCceEEeeccccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcC--cC-
Q 039403 134 LERLPRLQVLKLKRNSYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAY--LR- 202 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~--~~- 202 (249)
+..-..|+.|++++|.+.+.. +... +..-+.|++|+++. |.++ .+...+..-..|+.|+|++|.. .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~a-L~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIEL-IETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHH-HHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHH-HhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 334445555555555554322 0111 22345566666666 4554 2223333344577777765421 12
Q ss_pred ----CCccccccCcCccEEEccCCcH
Q 039403 203 ----KLPEELWCIKSLRKLDLHWPQT 224 (249)
Q Consensus 203 ----~l~~~l~~l~~L~~l~l~~~~~ 224 (249)
.+.+.+...+.|.+++++.+..
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344566677888888887763
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.03 E-value=0.041 Score=37.86 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred cccEEEeccCCcccceecc-CcccccccceeeccCcC
Q 039403 165 ELKVLHLKSMYWLDEWTMG-AGALPKLESLIVNPCAY 200 (249)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 200 (249)
++++|++++ |.++.++.. +..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 456666665 555555543 23455566666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.99 E-value=0.0061 Score=45.28 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=61.1
Q ss_pred ccCCCCCceEEeecc-ccCCce---eeeeCCCCCCcccEEEeccCCccc-----ceeccCcccccccceeeccCcCcC--
Q 039403 134 LERLPRLQVLKLKRN-SYLGRK---LACAGSGGFPELKVLHLKSMYWLD-----EWTMGAGALPKLESLIVNPCAYLR-- 202 (249)
Q Consensus 134 ~~~l~~L~~L~l~~~-~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-- 202 (249)
+..-+.|+.|++.++ .+.... +... +..-..|+.|++++ +.++ .+...+..-+.|++|+|+.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345567899999875 554322 1223 55677899999999 5666 233334445789999999999755
Q ss_pred --CCccccccCcCccEEEccCC
Q 039403 203 --KLPEELWCIKSLRKLDLHWP 222 (249)
Q Consensus 203 --~l~~~l~~l~~L~~l~l~~~ 222 (249)
.+.+.+.....|++|++++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 34566777888999999864
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.40 E-value=0.14 Score=35.05 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=17.3
Q ss_pred CccEEEEEcccCCCCCcccccCCCCCceEEeeccc
Q 039403 115 SLIQLSLSNTELMEDPMPMLERLPRLQVLKLKRNS 149 (249)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (249)
+++.|++++|.++......+..+++|+.|++.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555543233334445555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.52 E-value=14 Score=23.66 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=6.1
Q ss_pred CCCcccCeEEEec
Q 039403 60 GRLPSVQTLRISG 72 (249)
Q Consensus 60 ~~l~~L~~L~l~~ 72 (249)
.+|.+|+.+.+..
T Consensus 17 ~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 17 AGNTVIREITVQP 29 (100)
T ss_dssp TTCTTCCCEEECT
T ss_pred cCCCCCcEEEcCC
Confidence 3444555554443
Done!