BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039404
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1
Length = 1131
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
VAYSRHIVQ+Y +GG+++RQHLEIDAHVGGVNDI+FS PNKQL VITCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDA 493
Query: 61 TNGVK 65
GVK
Sbjct: 494 ATGVK 498
>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
Length = 1120
Score = 119 bits (297), Expect = 8e-27, Method: Composition-based stats.
Identities = 53/65 (81%), Positives = 58/65 (89%)
Query: 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
VAYSRHIVQ+Y +GG+++RQHLEIDAHVGGVNDIAFS PNKQL V TCGDDKTIKVWDA
Sbjct: 434 VAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDA 493
Query: 61 TNGVK 65
GVK
Sbjct: 494 ATGVK 498
>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
Length = 1135
Score = 105 bits (262), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
VAYS+HIV IY +GG+++R HLEIDAH G VND+AFS PN+QL V+TCG+DKTIKVWDA
Sbjct: 436 VAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDA 495
Query: 61 TNGVK 65
G K
Sbjct: 496 VTGNK 500
>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1
Length = 1108
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 53/61 (86%)
Query: 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60
VA+++H++Q+Y +G +++RQH EIDAHVG VND+AF++PN+QL VITCGDDK IKVWD
Sbjct: 424 VAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWDV 483
Query: 61 T 61
+
Sbjct: 484 S 484
>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2
Length = 1131
Score = 93.6 bits (231), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query: 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
V++++H++ +Y G D +RQHLEIDAHVG VND+AF+HPNKQ+ V+TCGDDK IKVWD
Sbjct: 426 VSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD 483
>sp|Q59WJ4|PFS2_CANAL Polyadenylation factor subunit 2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=PFS2 PE=3 SV=1
Length = 543
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I AH GV DIAFS PN + +TCGDD IK+W+ NG
Sbjct: 214 ISAHANGVRDIAFS-PNDSKF-LTCGDDSAIKIWNFNNG 250
>sp|Q6BVZ3|PFS2_DEBHA Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PFS2 PE=3 SV=2
Length = 504
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I+ H G+ DIAFS PN + +TC DD T+K+W+ NG
Sbjct: 201 INGHSDGIRDIAFS-PNDSKF-LTCSDDSTMKIWNFNNG 237
>sp|Q5RE10|TSSC1_PONAB Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1
Length = 414
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 252 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 287
>sp|Q4R571|TSSC1_MACFA Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1
Length = 387
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q53HC9|TSSC1_HUMAN Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2
Length = 387
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q5PPK9|TSSC1_RAT Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1
Length = 386
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q8K0G5|TSSC1_MOUSE Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=2
Length = 386
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q1JP79|ARC1A_BOVIN Actin-related protein 2/3 complex subunit 1A OS=Bos taurus
GN=ARPC1A PE=2 SV=1
Length = 370
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
+ H V IY NGG V+ H E+ H G + I ++ + + ++TCG D+ VW +G
Sbjct: 28 NNHEVHIYKKNGGQWVKAH-ELKEHNGHITGIDWAPKSDR--IVTCGADRNAYVWSQKDG 84
Query: 64 V 64
V
Sbjct: 85 V 85
>sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1
Length = 387
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1
Length = 387
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q6DUZ9|TSSC1_GECJA Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1
Length = 387
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
AH V D+ F+ PNKQ Y+ +CGDD +K WD N
Sbjct: 226 AHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWDTRN 260
>sp|Q6FJS0|PFS2_CANGA Polyadenylation factor subunit 2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PFS2 PE=3 SV=1
Length = 455
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
H G+ D+AFS+ + + +TC DD +K+W+ +NG
Sbjct: 165 HTEGIRDVAFSNNDSKF--VTCSDDNILKIWNFSNG 198
>sp|Q5XJP1|TSSC1_DANRE Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1
Length = 387
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
+AH V D+ F+ PNKQ Y+ +CGDD +K WD
Sbjct: 225 NAHGQLVRDLDFN-PNKQYYLASCGDDCKVKFWD 257
>sp|P42841|PFS2_YEAST Polyadenylation factor subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PFS2 PE=1 SV=1
Length = 465
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 24 EIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
EIDA H + D+AFS + + +TC DD +K+W+ +NG
Sbjct: 171 EIDAAHTESIRDMAFSSNDSKF--VTCSDDNILKIWNFSNG 209
>sp|Q4P9P9|LIS1_USTMA Nuclear distribution protein PAC1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=PAC1 PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65
V+++ GD R + H V D+ F +K YV++C D +IKVWDA N K
Sbjct: 146 VKLWDWETGDFERT---LKGHTKAVQDVDFD--SKGNYVLSCSSDLSIKVWDANNDYK 198
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens
GN=ARPC1A PE=1 SV=2
Length = 370
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
+ H V IY NG V+ H E+ H G + I ++ + + ++TCG D+ VW +G
Sbjct: 28 NNHEVHIYKKNGSQWVKAH-ELKEHNGHITGIDWAPKSDR--IVTCGADRNAYVWSQKDG 84
Query: 64 V 64
V
Sbjct: 85 V 85
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum
GN=wdr5 PE=3 SV=1
Length = 335
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G++DIA+S +K + + DDKTIK+WD +G
Sbjct: 84 LEGHKEGISDIAWSQDSK--LICSASDDKTIKIWDVESG 120
>sp|Q54YD8|COPB2_DICDI Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3
SV=1
Length = 1005
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
H ++ H G+N + + ++ Y+I+ DDK +K+WD
Sbjct: 179 HFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWD 216
>sp|B9WD30|LIS1_CANDC Nuclear distribution protein PAC1 OS=Candida dubliniensis (strain
CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL
Y-17841) GN=PAC1 PE=3 SV=1
Length = 489
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
I AH +N I F++ K Y+ TC D TIK+WD
Sbjct: 162 IKAHTRAINKICFTY-KKPYYLATCSSDLTIKIWD 195
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 39 HPNKQLYVITCGDDKTIKVWDATN 62
HPN + ++I+ DDKTIK WD ++
Sbjct: 400 HPNGR-FIISGSDDKTIKFWDLSS 422
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V +AFS P+++ V + DDKTIK+WDA +G
Sbjct: 879 LEGHGGSVWSVAFS-PDRE-RVASGSDDKTIKIWDAASG 915
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V +AFS P+ Q V + DD TIK+WDA +G
Sbjct: 921 LEGHGGRVQSVAFS-PDGQ-RVASGSDDHTIKIWDAASG 957
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V +AFS P+ Q V + DDKTIK+WD +G
Sbjct: 1005 LEGHGGSVWSVAFS-PDGQ-RVASGSDDKTIKIWDTASG 1041
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V + FS P+ Q V + DD TIK+WDA +G
Sbjct: 1047 LEGHGGWVQSVVFS-PDGQ-RVASGSDDHTIKIWDAVSG 1083
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V +AFS P+ Q V + DKTIK+WD +G
Sbjct: 1173 LEGHGGWVQSVAFS-PDGQ-RVASGSSDKTIKIWDTASG 1209
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H V +AFS ++ V + DDKTIK+WD +G
Sbjct: 837 LEGHGSSVLSVAFSADGQR--VASGSDDKTIKIWDTASG 873
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V+ +AFS P+ Q V + D TIK+WDA +G
Sbjct: 1131 LEGHGGWVHSVAFS-PDGQ-RVASGSIDGTIKIWDAASG 1167
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++ H G V +AFS P+ Q V + D TIK+WD +G
Sbjct: 1215 LEGHGGWVQSVAFS-PDGQ-RVASGSSDNTIKIWDTASG 1251
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
H ++I+ G Q LE H V +AFS P+ Q V + DKTIK+WD +G
Sbjct: 947 HTIKIWDAASG-TCTQTLE--GHGSSVLSVAFS-PDGQ-RVASGSGDKTIKIWDTASG 999
>sp|Q75AV4|PFS2_ASHGO Polyadenylation factor subunit 2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PSF2
PE=3 SV=1
Length = 449
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
AH + DI+FS+ +++ +TC DD +K+W+ +NG
Sbjct: 161 AHTECMRDISFSYSDQKF--VTCSDDNVLKIWNFSNG 195
>sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2
SV=2
Length = 920
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
+ +DAH+ GVN + + + Y+IT DD T KVWD
Sbjct: 178 NFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
>sp|Q09731|BU107_SCHPO UBP9-binding protein bun107 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bun107 PE=1 SV=1
Length = 962
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVW 58
+I AH VNDIA +H ++ VI+C D T+K+W
Sbjct: 74 KIQAHSAWVNDIALTHDSEG--VISCSSDSTVKLW 106
>sp|Q7ZVR1|WDR75_DANRE WD repeat-containing protein 75 OS=Danio rerio GN=wdr75 PE=2 SV=2
Length = 832
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 13 CNGGDEVRQHL--------EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64
C GD V+ + + H V IAF+ P QL V +C D T+K+WD +G+
Sbjct: 33 CVSGDSVKVYSTRTEEWLHNLQGHNNQVTGIAFN-PANQLQVYSCSADGTVKLWDFIDGI 91
>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans
GN=F38E11.5 PE=3 SV=3
Length = 1000
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+ ++ H GVN + + H ++ Y+I+ DD +K+WD N
Sbjct: 178 NFTLEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQN 218
>sp|Q8C7V3|UTP15_MOUSE U3 small nucleolar RNA-associated protein 15 homolog OS=Mus
musculus GN=Utp15 PE=2 SV=1
Length = 528
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+VQ++ NG +RQ + H V+ + F+ N +V++ DD T+K+WD N
Sbjct: 103 VVQLFDINGRAPLRQ---FEGHTKAVHTVDFTADN--YHVVSGADDYTVKLWDIPN 153
>sp|O14186|YDSB_SCHPO Uncharacterized WD repeat-containing protein C4F8.11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F8.11 PE=4 SV=1
Length = 846
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 23 LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65
L++ AH G V + +S PN +++ +CG DKTI++WD+T+ K
Sbjct: 215 LKLAAHNGVVLCVNYS-PNG-VFLASCGRDKTIRIWDSTSNKK 255
>sp|O42937|COPB2_SCHPO Probable coatomer subunit beta' OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec27 PE=3 SV=2
Length = 796
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
+ + AH GVN + + + Y+IT GDD IKVWD
Sbjct: 177 NFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWD 214
>sp|C4YPI7|LIS1_CANAW Nuclear distribution protein PAC1 OS=Candida albicans (strain WO-1)
GN=PAC1 PE=3 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
I AH +N I F++ K Y+ TC D TIK+WD
Sbjct: 162 IKAHTRAINKICFTY-KKPYYLATCSSDLTIKIWD 195
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
E+ H V + HPN + ++I+ DDKTIK WD
Sbjct: 386 ELKGHSSWVKSLCV-HPNGK-FIISGSDDKTIKFWD 419
>sp|Q5A7Q6|LIS1_CANAL Nuclear distribution protein PAC1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=PAC1 PE=3 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
I AH +N I F++ K Y+ TC D TIK+WD
Sbjct: 162 IKAHTRAINKICFTY-KKPYYLATCSSDLTIKIWD 195
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
E+ H V + HPN + ++I+ DDKTIK WD
Sbjct: 386 ELKGHSSWVKSLCV-HPNGK-FIISGSDDKTIKFWD 419
>sp|C5MJE8|LIS1_CANTT Nuclear distribution protein PAC1 OS=Candida tropicalis (strain
ATCC MYA-3404 / T1) GN=PAC1 PE=3 SV=1
Length = 490
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
I AH +N + FS+ K Y+ TC D TIK+WD
Sbjct: 161 IKAHTRSINKMCFSY-RKPYYLATCSSDLTIKIWD 194
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 39 HPNKQLYVITCGDDKTIKVWD 59
HPN + ++I+ DDKTIK WD
Sbjct: 399 HPNGK-FIISGSDDKTIKFWD 418
>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2
SV=2
Length = 914
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+ ++ H GVN + + H + Y+I+ DD+ +K+WD N
Sbjct: 178 NFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQN 218
>sp|Q39190|PRL2_ARATH Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2
PE=2 SV=2
Length = 479
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 23 LEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
L + H+G V +A S N+ Y+ + GDDK +K WD
Sbjct: 206 LTLTGHIGQVRGLAVS--NRHTYMFSAGDDKQVKCWD 240
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64
+ H+G V +AF N+ + T D+TIK+WD GV
Sbjct: 166 LQGHLGWVRSVAFDPSNE--WFCTGSADRTIKIWDVATGV 203
>sp|A5DJX5|LIS1_PICGU Nuclear distribution protein PAC1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=PAC1 PE=3 SV=2
Length = 507
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
++I+ N ++R + H V+ IAFS P+K + + DKT K+WD+TNG
Sbjct: 209 IKIWDGNSNSQIRI---LTGHDHTVSSIAFS-PSKPSILYSVSRDKTTKIWDSTNG 260
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 39 HPNKQLYVITCGDDKTIKVWD 59
HPN + ++ + GDDK+I+VWD
Sbjct: 421 HPNGR-FIFSAGDDKSIRVWD 440
>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1
PE=1 SV=3
Length = 1249
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
+Q++ G+++ L+I AH V AFS + Y+ TC DK +K+WD+ G
Sbjct: 639 LQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWDSATG 689
>sp|Q4P553|HAT2_USTMA Histone acetyltransferase type B subunit 2 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=HAT2 PE=3 SV=1
Length = 485
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
++AH G VN +AFS N+ + ++T DK++ VWD N
Sbjct: 332 VEAHTGEVNALAFSPENENI-LVTGSSDKSVGVWDLRN 368
>sp|O14021|PRW1_SCHPO RbAp48-related WD40 repeat-containing protein prw1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prw1 PE=1 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62
+ AH G ++ +AF+ P+ + TC DKTI +WD N
Sbjct: 277 VHAHSGPIHSVAFN-PHNDFILATCSTDKTIALWDLRN 313
>sp|Q86A97|TSSC1_DICDI Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1
SV=1
Length = 400
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
AH + DI F+ PNK Y+++ GDD +K+WD
Sbjct: 227 AHSEQIRDIDFN-PNKPYYLLSAGDDCKLKIWD 258
>sp|D5GBI7|LIS1_TUBMM Nuclear distribution protein PAC1 OS=Tuber melanosporum (strain
Mel28) GN=PAC1 PE=3 SV=1
Length = 452
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65
+ H V D+ F P + +++C D TIK+WD N K
Sbjct: 157 VKGHTKAVLDLDFGGPKAGVLLVSCSSDLTIKLWDPNNEYK 197
>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2
SV=1
Length = 334
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I H G++D+A+S + L ++ DDKT+K+WD ++G
Sbjct: 83 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSG 119
>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1
Length = 334
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I H G++D+A+S + L ++ DDKT+K+WD ++G
Sbjct: 83 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSG 119
>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1
Length = 334
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I H G++D+A+S + L ++ DDKT+K+WD ++G
Sbjct: 83 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSG 119
>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1
Length = 334
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I H G++D+A+S + L ++ DDKT+K+WD ++G
Sbjct: 83 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSG 119
>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2
SV=1
Length = 334
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63
I H G++D+A+S + L ++ DDKT+K+WD ++G
Sbjct: 83 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSG 119
>sp|A8XZJ9|LIS1_CAEBR Lissencephaly-1 homolog OS=Caenorhabditis briggsae GN=lis-1 PE=3
SV=2
Length = 390
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59
+ H VNDIA KQL ++C D TIK+WD
Sbjct: 144 LKGHTDAVNDIAIDAAGKQL--VSCSTDLTIKLWD 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,863,740
Number of Sequences: 539616
Number of extensions: 880423
Number of successful extensions: 4509
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 3483
Number of HSP's gapped (non-prelim): 1424
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)