Query 039404
Match_columns 65
No_of_seqs 120 out of 2116
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 99.6 9.3E-16 2E-20 79.0 5.6 58 2-64 133-190 (480)
2 KOG0295 WD40 repeat-containing 99.6 8.2E-15 1.8E-19 74.9 7.4 58 2-64 310-367 (406)
3 KOG0263 Transcription initiati 99.6 2.1E-14 4.5E-19 78.1 8.0 59 1-64 552-610 (707)
4 KOG0266 WD40 repeat-containing 99.5 2.8E-13 6E-18 71.8 7.6 59 2-64 221-279 (456)
5 PTZ00421 coronin; Provisional 99.5 5E-13 1.1E-17 71.5 8.0 58 2-64 144-201 (493)
6 KOG0279 G protein beta subunit 99.5 5.4E-13 1.2E-17 66.6 6.7 57 2-63 81-137 (315)
7 KOG0266 WD40 repeat-containing 99.5 8.9E-13 1.9E-17 70.0 7.6 58 2-64 264-321 (456)
8 KOG0279 G protein beta subunit 99.5 5.7E-13 1.2E-17 66.5 6.2 58 2-64 168-225 (315)
9 KOG0285 Pleiotropic regulator 99.4 9.8E-13 2.1E-17 67.8 6.6 59 1-64 252-310 (460)
10 KOG0302 Ribosome Assembly prot 99.4 9.4E-13 2E-17 68.0 6.2 60 1-63 275-334 (440)
11 KOG0272 U4/U6 small nuclear ri 99.4 9.6E-14 2.1E-18 72.1 2.4 59 1-64 236-294 (459)
12 KOG0272 U4/U6 small nuclear ri 99.4 9.4E-13 2E-17 68.5 6.0 57 2-63 321-377 (459)
13 KOG0278 Serine/threonine kinas 99.4 2.1E-12 4.7E-17 64.1 6.9 59 2-64 242-300 (334)
14 PF00400 WD40: WD domain, G-be 99.4 5.2E-12 1.1E-16 46.5 6.2 36 22-59 4-39 (39)
15 KOG1034 Transcriptional repres 99.4 2.2E-12 4.7E-17 65.8 6.6 59 2-62 154-212 (385)
16 KOG0284 Polyadenylation factor 99.4 1.1E-12 2.3E-17 68.2 5.0 58 2-64 198-255 (464)
17 KOG0277 Peroxisomal targeting 99.4 4.5E-12 9.7E-17 63.0 6.5 58 2-63 123-180 (311)
18 KOG0293 WD40 repeat-containing 99.4 1.8E-12 3.9E-17 67.7 5.4 57 1-61 457-513 (519)
19 KOG0316 Conserved WD40 repeat- 99.4 7.3E-12 1.6E-16 61.8 7.1 57 2-63 77-133 (307)
20 PTZ00421 coronin; Provisional 99.4 8.4E-12 1.8E-16 66.9 7.5 62 2-64 94-159 (493)
21 KOG0286 G-protein beta subunit 99.4 4.5E-12 9.8E-17 63.8 6.1 58 2-64 205-262 (343)
22 KOG1273 WD40 repeat protein [G 99.4 2.6E-12 5.6E-17 65.4 5.1 59 1-64 40-98 (405)
23 KOG0281 Beta-TrCP (transducin 99.4 1.5E-12 3.2E-17 67.1 4.2 57 2-65 213-269 (499)
24 KOG0315 G-protein beta subunit 99.4 8.9E-12 1.9E-16 61.8 6.7 60 1-64 232-291 (311)
25 KOG0639 Transducin-like enhanc 99.4 1.6E-12 3.4E-17 69.4 4.4 58 2-64 527-584 (705)
26 KOG0285 Pleiotropic regulator 99.4 6.7E-12 1.4E-16 64.8 6.3 58 1-63 168-225 (460)
27 KOG0315 G-protein beta subunit 99.3 1.1E-11 2.3E-16 61.6 6.7 58 3-63 58-115 (311)
28 KOG0289 mRNA splicing factor [ 99.3 6.3E-12 1.4E-16 65.9 6.2 57 2-63 365-421 (506)
29 PTZ00420 coronin; Provisional 99.3 2.1E-11 4.4E-16 66.3 7.9 62 2-64 93-159 (568)
30 KOG0302 Ribosome Assembly prot 99.3 9.2E-12 2E-16 64.4 6.0 60 1-61 319-378 (440)
31 KOG0647 mRNA export protein (c 99.3 7E-12 1.5E-16 63.4 5.5 61 1-64 45-105 (347)
32 KOG0263 Transcription initiati 99.3 5.7E-12 1.2E-16 69.0 5.3 57 1-62 594-650 (707)
33 KOG0273 Beta-transducin family 99.3 1.3E-11 2.8E-16 65.2 6.4 58 2-64 428-485 (524)
34 KOG0276 Vesicle coat complex C 99.3 2.2E-12 4.7E-17 70.1 3.6 56 2-62 203-258 (794)
35 KOG0264 Nucleosome remodeling 99.3 1.1E-11 2.4E-16 64.7 6.0 60 2-63 246-305 (422)
36 PLN00181 protein SPA1-RELATED; 99.3 2.9E-11 6.3E-16 67.5 8.0 57 2-63 551-608 (793)
37 KOG0313 Microtubule binding pr 99.3 1E-11 2.2E-16 64.2 5.6 62 2-64 318-379 (423)
38 KOG0291 WD40-repeat-containing 99.3 1.9E-11 4.1E-16 67.5 6.8 58 1-63 367-424 (893)
39 KOG1445 Tumor-specific antigen 99.3 8.6E-12 1.9E-16 68.3 5.0 58 2-64 696-753 (1012)
40 KOG1332 Vesicle coat complex C 99.3 5.7E-11 1.2E-15 58.9 7.2 62 1-64 28-91 (299)
41 KOG0319 WD40-repeat-containing 99.3 3.3E-11 7.2E-16 66.2 6.5 58 1-63 480-537 (775)
42 KOG0291 WD40-repeat-containing 99.3 2.2E-11 4.7E-16 67.3 5.7 50 7-61 459-508 (893)
43 KOG0264 Nucleosome remodeling 99.3 3.5E-11 7.6E-16 62.9 6.1 59 1-62 290-348 (422)
44 KOG0286 G-protein beta subunit 99.3 8.1E-11 1.8E-15 59.5 7.1 58 2-64 162-220 (343)
45 PTZ00420 coronin; Provisional 99.3 9.7E-11 2.1E-15 63.8 7.9 57 2-64 144-200 (568)
46 KOG4283 Transcription-coupled 99.3 5E-11 1.1E-15 60.5 6.3 57 2-62 164-220 (397)
47 KOG0282 mRNA splicing factor [ 99.3 4.4E-12 9.5E-17 66.9 2.7 59 2-64 233-291 (503)
48 KOG0319 WD40-repeat-containing 99.2 6E-11 1.3E-15 65.2 6.6 59 1-64 522-580 (775)
49 KOG0283 WD40 repeat-containing 99.2 4.8E-11 1E-15 65.7 6.1 57 2-63 386-442 (712)
50 KOG0294 WD40 repeat-containing 99.2 9.5E-11 2.1E-15 59.7 6.3 59 1-64 102-160 (362)
51 KOG0269 WD40 repeat-containing 99.2 3.5E-11 7.6E-16 66.4 4.7 59 2-64 195-253 (839)
52 KOG0271 Notchless-like WD40 re 99.2 4.4E-11 9.4E-16 62.3 4.6 58 2-64 385-442 (480)
53 KOG0772 Uncharacterized conser 99.2 6.9E-11 1.5E-15 63.3 5.3 60 2-63 335-396 (641)
54 KOG0281 Beta-TrCP (transducin 99.2 1.1E-11 2.3E-16 64.1 2.3 56 1-63 375-430 (499)
55 KOG0303 Actin-binding protein 99.2 2.4E-10 5.2E-15 59.7 6.7 57 2-64 150-206 (472)
56 KOG1539 WD repeat protein [Gen 99.2 8.4E-11 1.8E-15 65.5 4.7 57 3-64 553-609 (910)
57 KOG0318 WD40 repeat stress pro 99.1 4.1E-10 9E-15 60.4 6.8 60 2-63 208-267 (603)
58 KOG0647 mRNA export protein (c 99.1 3.4E-10 7.4E-15 57.4 6.1 59 1-64 89-148 (347)
59 KOG0270 WD40 repeat-containing 99.1 3.6E-10 7.9E-15 59.4 6.4 58 1-62 261-318 (463)
60 KOG0292 Vesicle coat complex C 99.1 3.6E-10 7.7E-15 63.8 6.5 56 2-62 111-166 (1202)
61 KOG0316 Conserved WD40 repeat- 99.1 2.3E-10 4.9E-15 56.7 5.0 59 1-64 34-92 (307)
62 KOG0265 U5 snRNP-specific prot 99.1 7.4E-10 1.6E-14 56.2 6.9 60 1-64 64-123 (338)
63 KOG0310 Conserved WD40 repeat- 99.1 5.5E-10 1.2E-14 59.2 6.7 58 2-63 129-186 (487)
64 KOG0308 Conserved WD40 repeat- 99.1 5.2E-10 1.1E-14 61.2 6.6 57 2-63 189-245 (735)
65 KOG0649 WD40 repeat protein [G 99.1 7.2E-10 1.6E-14 55.2 6.3 57 3-64 133-189 (325)
66 KOG0643 Translation initiation 99.1 6.7E-10 1.5E-14 55.8 6.1 58 2-64 28-85 (327)
67 KOG0282 mRNA splicing factor [ 99.1 6.1E-10 1.3E-14 59.1 6.1 58 2-64 276-333 (503)
68 KOG0284 Polyadenylation factor 99.1 3.3E-10 7.1E-15 59.3 4.6 57 1-62 239-295 (464)
69 KOG0273 Beta-transducin family 99.1 1.9E-09 4E-14 57.3 7.2 57 2-63 335-391 (524)
70 KOG0265 U5 snRNP-specific prot 99.1 8.4E-10 1.8E-14 56.0 5.6 57 2-63 192-248 (338)
71 KOG0322 G-protein beta subunit 99.1 2.5E-10 5.3E-15 57.2 3.7 55 1-60 268-322 (323)
72 KOG0292 Vesicle coat complex C 99.1 1.6E-10 3.5E-15 65.2 3.4 56 4-64 29-84 (1202)
73 KOG1036 Mitotic spindle checkp 99.1 1.5E-09 3.3E-14 55.1 6.4 55 2-62 71-125 (323)
74 KOG0274 Cdc4 and related F-box 99.1 1.9E-09 4.2E-14 58.6 7.1 56 2-64 307-362 (537)
75 KOG0277 Peroxisomal targeting 99.1 1.7E-09 3.7E-14 54.1 6.4 58 2-63 166-223 (311)
76 KOG0296 Angio-associated migra 99.1 1.3E-09 2.9E-14 56.4 6.2 60 1-65 165-224 (399)
77 KOG0276 Vesicle coat complex C 99.1 1.7E-09 3.7E-14 59.3 6.8 57 1-62 72-128 (794)
78 KOG0296 Angio-associated migra 99.0 3.2E-09 7E-14 55.0 7.2 58 2-64 82-139 (399)
79 KOG0313 Microtubule binding pr 99.0 1E-09 2.2E-14 57.0 5.3 56 2-63 277-332 (423)
80 KOG0303 Actin-binding protein 99.0 8.1E-10 1.7E-14 57.8 4.9 63 1-64 99-165 (472)
81 KOG0269 WD40 repeat-containing 99.0 7.4E-10 1.6E-14 61.5 4.4 62 1-63 105-166 (839)
82 KOG1007 WD repeat protein TSSC 99.0 1.5E-09 3.2E-14 55.2 5.1 57 2-61 233-289 (370)
83 KOG0306 WD40-repeat-containing 99.0 2.7E-09 5.9E-14 59.4 6.3 57 1-62 82-138 (888)
84 KOG1446 Histone H3 (Lys4) meth 99.0 5.3E-09 1.1E-13 53.1 6.8 54 5-63 79-132 (311)
85 KOG0275 Conserved WD40 repeat- 99.0 3.3E-10 7.2E-15 58.4 2.5 59 1-64 280-339 (508)
86 KOG0275 Conserved WD40 repeat- 99.0 1.1E-09 2.4E-14 56.6 4.2 58 2-64 324-381 (508)
87 KOG0645 WD40 repeat protein [G 99.0 1E-08 2.3E-13 51.6 7.3 58 2-61 168-225 (312)
88 KOG1034 Transcriptional repres 99.0 1.5E-09 3.3E-14 55.7 4.3 58 2-63 111-168 (385)
89 KOG0645 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 50.9 7.8 59 2-63 79-137 (312)
90 KOG0295 WD40 repeat-containing 99.0 6.3E-09 1.4E-13 54.0 6.3 57 2-63 211-267 (406)
91 KOG2394 WD40 protein DMR-N9 [G 98.9 1.1E-09 2.4E-14 59.0 3.4 57 3-64 309-365 (636)
92 KOG0305 Anaphase promoting com 98.9 7.1E-09 1.5E-13 55.7 6.2 60 1-64 318-379 (484)
93 KOG0300 WD40 repeat-containing 98.9 4.1E-09 8.9E-14 54.4 5.1 56 2-62 332-387 (481)
94 KOG0293 WD40 repeat-containing 98.9 8.5E-09 1.9E-13 54.5 6.1 61 2-64 242-302 (519)
95 KOG1272 WD40-repeat-containing 98.9 1.5E-09 3.4E-14 57.7 3.4 57 2-63 269-325 (545)
96 KOG0278 Serine/threonine kinas 98.9 7.5E-10 1.6E-14 55.3 2.1 59 2-64 118-176 (334)
97 PLN00181 protein SPA1-RELATED; 98.9 1.7E-08 3.8E-13 56.8 7.5 59 2-62 678-739 (793)
98 KOG0274 Cdc4 and related F-box 98.9 1.7E-08 3.7E-13 55.1 7.2 59 2-64 224-282 (537)
99 KOG0642 Cell-cycle nuclear pro 98.9 6.9E-09 1.5E-13 56.1 5.3 58 2-61 312-374 (577)
100 cd00200 WD40 WD40 domain, foun 98.9 3.2E-08 6.9E-13 48.4 7.3 57 2-63 69-125 (289)
101 KOG0772 Uncharacterized conser 98.9 5.2E-09 1.1E-13 56.4 4.7 59 1-61 286-347 (641)
102 cd00200 WD40 WD40 domain, foun 98.9 4.3E-08 9.4E-13 47.9 7.6 57 2-63 27-83 (289)
103 KOG1188 WD40 repeat protein [G 98.9 8E-09 1.7E-13 53.3 4.6 58 2-63 46-104 (376)
104 KOG0294 WD40 repeat-containing 98.9 1.7E-08 3.6E-13 51.8 5.7 58 1-62 58-116 (362)
105 KOG0267 Microtubule severing p 98.8 1.3E-09 2.8E-14 60.3 1.7 56 1-61 87-142 (825)
106 KOG0318 WD40 repeat stress pro 98.8 5E-08 1.1E-12 52.8 7.0 61 1-64 460-520 (603)
107 KOG0321 WD40 repeat-containing 98.8 1.2E-08 2.5E-13 56.1 4.5 59 2-62 118-176 (720)
108 KOG2048 WD40 repeat protein [G 98.8 7.5E-08 1.6E-12 53.1 7.5 61 1-64 127-187 (691)
109 KOG0305 Anaphase promoting com 98.8 4.5E-08 9.7E-13 52.8 6.5 56 2-62 407-462 (484)
110 KOG0290 Conserved WD40 repeat- 98.8 6.8E-08 1.5E-12 49.3 6.8 61 2-63 169-229 (364)
111 KOG0308 Conserved WD40 repeat- 98.8 1.2E-08 2.6E-13 56.1 4.4 59 2-63 91-150 (735)
112 KOG0301 Phospholipase A2-activ 98.8 5.2E-08 1.1E-12 54.0 6.7 55 1-61 195-249 (745)
113 KOG0310 Conserved WD40 repeat- 98.8 8.7E-09 1.9E-13 54.8 3.6 59 1-63 85-143 (487)
114 KOG0300 WD40 repeat-containing 98.8 1E-08 2.2E-13 52.9 3.8 53 2-59 166-218 (481)
115 KOG0270 WD40 repeat-containing 98.8 5.3E-09 1.1E-13 55.2 2.7 64 1-65 197-278 (463)
116 KOG1407 WD40 repeat protein [F 98.8 1.2E-08 2.6E-13 51.2 3.8 61 2-64 38-98 (313)
117 KOG0771 Prolactin regulatory e 98.8 1.8E-08 3.9E-13 52.8 4.3 57 1-63 161-217 (398)
118 KOG2110 Uncharacterized conser 98.8 1.6E-07 3.5E-12 49.0 7.5 55 5-64 152-207 (391)
119 KOG0288 WD40 repeat protein Ti 98.8 3.4E-08 7.4E-13 52.1 5.1 56 1-59 404-459 (459)
120 KOG0268 Sof1-like rRNA process 98.8 3.3E-08 7.1E-13 51.6 4.9 54 1-61 84-137 (433)
121 KOG1274 WD40 repeat protein [G 98.7 9.3E-08 2E-12 54.2 6.8 59 1-64 113-171 (933)
122 KOG1007 WD repeat protein TSSC 98.7 2.7E-08 5.8E-13 50.8 4.3 57 4-63 191-247 (370)
123 KOG2445 Nuclear pore complex c 98.7 2.1E-07 4.5E-12 47.9 7.3 58 1-60 30-90 (361)
124 KOG0307 Vesicle coat complex C 98.7 1.8E-08 3.9E-13 57.8 3.9 61 2-63 86-149 (1049)
125 KOG0973 Histone transcription 98.7 6.5E-08 1.4E-12 55.2 6.0 55 2-61 147-201 (942)
126 KOG0640 mRNA cleavage stimulat 98.7 4.4E-08 9.6E-13 50.5 4.9 60 1-62 129-203 (430)
127 KOG0640 mRNA cleavage stimulat 98.7 6.3E-08 1.4E-12 50.0 5.3 58 4-63 236-293 (430)
128 KOG0267 Microtubule severing p 98.7 4E-08 8.7E-13 54.7 4.8 58 2-64 130-187 (825)
129 KOG0646 WD40 repeat protein [G 98.7 3.6E-08 7.7E-13 52.4 3.9 53 4-61 101-153 (476)
130 KOG4283 Transcription-coupled 98.7 2.9E-08 6.4E-13 50.8 3.5 62 1-64 206-279 (397)
131 KOG4328 WD40 protein [Function 98.7 7.9E-08 1.7E-12 51.2 5.0 59 1-61 340-399 (498)
132 smart00320 WD40 WD40 repeats. 98.7 2.8E-07 6.1E-12 32.3 5.3 34 24-59 7-40 (40)
133 KOG1445 Tumor-specific antigen 98.7 2.3E-08 5E-13 55.5 3.0 62 1-63 645-710 (1012)
134 KOG2096 WD40 repeat protein [G 98.7 6E-08 1.3E-12 50.1 4.1 37 24-62 81-117 (420)
135 KOG0646 WD40 repeat protein [G 98.7 2.7E-07 5.8E-12 49.3 6.5 64 1-64 140-209 (476)
136 KOG1407 WD40 repeat protein [F 98.7 7.4E-08 1.6E-12 48.5 4.2 59 1-64 206-264 (313)
137 KOG1188 WD40 repeat protein [G 98.6 1.4E-07 2.9E-12 48.9 4.8 57 5-63 142-198 (376)
138 KOG0288 WD40 repeat protein Ti 98.6 4.6E-07 1E-11 48.0 6.2 60 2-64 359-420 (459)
139 KOG0643 Translation initiation 98.6 1.9E-07 4.1E-12 47.3 4.6 58 2-63 165-222 (327)
140 KOG0283 WD40 repeat-containing 98.6 2E-07 4.3E-12 52.1 5.1 38 23-62 260-298 (712)
141 KOG0306 WD40-repeat-containing 98.6 4E-07 8.6E-12 51.2 6.2 57 2-63 526-582 (888)
142 KOG2111 Uncharacterized conser 98.6 1.2E-06 2.7E-11 45.1 7.5 58 2-62 199-257 (346)
143 KOG2096 WD40 repeat protein [G 98.6 1.5E-07 3.3E-12 48.7 4.0 54 6-61 250-308 (420)
144 KOG1332 Vesicle coat complex C 98.6 1.8E-07 4E-12 46.8 4.1 60 2-62 76-135 (299)
145 KOG1446 Histone H3 (Lys4) meth 98.5 1.6E-06 3.5E-11 44.4 7.3 55 5-64 208-265 (311)
146 KOG0301 Phospholipase A2-activ 98.5 2.6E-07 5.7E-12 51.4 4.6 53 1-61 156-208 (745)
147 KOG0268 Sof1-like rRNA process 98.5 9.8E-08 2.1E-12 49.9 2.8 58 2-63 247-304 (433)
148 KOG0299 U3 snoRNP-associated p 98.5 3.4E-07 7.4E-12 48.9 4.8 56 2-62 220-275 (479)
149 KOG1538 Uncharacterized conser 98.5 4.9E-07 1.1E-11 50.8 5.5 52 5-61 32-83 (1081)
150 KOG1009 Chromatin assembly com 98.5 1E-06 2.3E-11 46.6 6.1 58 2-61 32-95 (434)
151 KOG0290 Conserved WD40 repeat- 98.5 5.9E-07 1.3E-11 46.1 5.1 55 5-62 265-319 (364)
152 KOG0973 Histone transcription 98.5 1.1E-06 2.5E-11 50.5 6.6 61 1-63 86-161 (942)
153 KOG1009 Chromatin assembly com 98.5 8.5E-07 1.8E-11 46.9 5.6 61 2-64 83-156 (434)
154 KOG4328 WD40 protein [Function 98.5 7E-07 1.5E-11 47.8 5.2 62 1-63 205-267 (498)
155 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 3.1E-06 6.7E-11 42.4 7.4 57 2-64 7-64 (300)
156 KOG0289 mRNA splicing factor [ 98.5 3.1E-06 6.6E-11 45.4 7.4 59 2-63 321-379 (506)
157 KOG1036 Mitotic spindle checkp 98.5 7.3E-07 1.6E-11 45.7 4.8 57 1-64 30-86 (323)
158 KOG2445 Nuclear pore complex c 98.5 9.2E-07 2E-11 45.6 5.0 56 2-60 245-317 (361)
159 KOG1408 WD40 repeat protein [F 98.4 1.8E-06 3.9E-11 48.9 6.4 61 2-64 614-674 (1080)
160 KOG0307 Vesicle coat complex C 98.4 2.3E-07 4.9E-12 53.5 3.1 56 6-64 232-287 (1049)
161 KOG0641 WD40 repeat protein [G 98.4 3.4E-06 7.4E-11 42.3 6.5 62 1-64 199-264 (350)
162 KOG0299 U3 snoRNP-associated p 98.4 2.8E-06 6E-11 45.6 6.3 57 1-64 303-359 (479)
163 KOG0650 WD40 repeat nucleolar 98.4 1.1E-06 2.5E-11 48.5 4.9 39 24-64 395-433 (733)
164 TIGR03866 PQQ_ABC_repeats PQQ- 98.4 7.8E-06 1.7E-10 40.9 7.6 54 5-64 228-282 (300)
165 KOG0641 WD40 repeat protein [G 98.4 4.7E-06 1E-10 41.8 6.6 54 4-62 251-304 (350)
166 KOG3881 Uncharacterized conser 98.4 1.2E-06 2.6E-11 46.1 4.7 57 3-63 266-322 (412)
167 KOG0642 Cell-cycle nuclear pro 98.4 1.8E-06 3.8E-11 47.2 5.3 60 2-63 362-428 (577)
168 KOG4714 Nucleoporin [Nuclear s 98.4 3.5E-07 7.7E-12 46.2 2.4 58 2-62 198-255 (319)
169 KOG0974 WD-repeat protein WDR6 98.4 3.6E-06 7.9E-11 48.5 6.4 58 2-64 151-208 (967)
170 KOG1539 WD repeat protein [Gen 98.4 7.9E-06 1.7E-10 46.6 7.5 60 1-64 219-278 (910)
171 KOG4378 Nuclear protein COP1 [ 98.4 1.5E-06 3.3E-11 47.3 4.6 60 1-63 182-241 (673)
172 KOG4378 Nuclear protein COP1 [ 98.3 1.3E-06 2.9E-11 47.5 4.0 58 2-64 97-154 (673)
173 KOG1517 Guanine nucleotide bin 98.3 3.3E-06 7.2E-11 49.4 5.7 61 1-62 1226-1288(1387)
174 KOG1274 WD40 repeat protein [G 98.3 5.7E-06 1.2E-10 47.4 6.3 57 3-62 207-263 (933)
175 PF08662 eIF2A: Eukaryotic tra 98.2 1.3E-05 2.9E-10 38.9 6.2 52 4-63 81-135 (194)
176 KOG2111 Uncharacterized conser 98.2 2.2E-05 4.8E-10 40.7 6.8 57 5-64 158-215 (346)
177 KOG1063 RNA polymerase II elon 98.2 7.7E-06 1.7E-10 45.9 5.4 51 7-62 553-603 (764)
178 KOG1587 Cytoplasmic dynein int 98.2 2.9E-05 6.3E-10 43.1 7.3 54 6-63 222-275 (555)
179 KOG1963 WD40 repeat protein [G 98.2 1.3E-05 2.8E-10 45.6 5.9 61 2-64 223-284 (792)
180 KOG0650 WD40 repeat nucleolar 98.2 9.7E-06 2.1E-10 45.1 5.3 56 2-59 668-733 (733)
181 KOG2048 WD40 repeat protein [G 98.2 1.8E-05 3.9E-10 44.3 6.4 61 1-64 171-236 (691)
182 KOG1408 WD40 repeat protein [F 98.2 4.1E-06 8.8E-11 47.6 3.9 54 3-61 660-713 (1080)
183 KOG0644 Uncharacterized conser 98.2 8.4E-07 1.8E-11 50.7 1.4 58 2-64 208-265 (1113)
184 PF08662 eIF2A: Eukaryotic tra 98.2 4.6E-05 1E-09 37.1 7.2 51 4-61 123-179 (194)
185 KOG1063 RNA polymerase II elon 98.1 7.5E-06 1.6E-10 46.0 4.6 59 2-61 165-224 (764)
186 KOG0644 Uncharacterized conser 98.1 2.6E-06 5.6E-11 48.8 2.8 52 1-61 249-300 (1113)
187 KOG0639 Transducin-like enhanc 98.1 3.9E-06 8.4E-11 45.9 3.2 59 2-63 483-541 (705)
188 KOG0280 Uncharacterized conser 98.1 3.5E-05 7.6E-10 39.8 6.2 60 1-62 183-242 (339)
189 KOG2695 WD40 repeat protein [G 98.1 1.1E-05 2.3E-10 42.5 4.4 61 2-64 317-379 (425)
190 PF11768 DUF3312: Protein of u 98.1 3.7E-05 8E-10 42.4 6.5 54 1-61 276-329 (545)
191 KOG1310 WD40 repeat protein [G 98.0 2.6E-05 5.5E-10 43.3 5.2 57 1-62 641-697 (758)
192 KOG4497 Uncharacterized conser 98.0 6.6E-05 1.4E-09 39.6 6.4 58 2-63 67-124 (447)
193 KOG1523 Actin-related protein 98.0 3.5E-05 7.6E-10 40.1 5.0 58 3-62 29-86 (361)
194 COG2319 FOG: WD40 repeat [Gene 98.0 0.00021 4.5E-09 36.5 7.8 54 4-62 132-187 (466)
195 COG2319 FOG: WD40 repeat [Gene 98.0 0.00019 4.2E-09 36.7 7.7 55 5-63 177-231 (466)
196 KOG1064 RAVE (regulator of V-A 98.0 1.5E-05 3.4E-10 49.0 3.9 56 4-63 2313-2368(2439)
197 PF12894 Apc4_WD40: Anaphase-p 97.9 0.0001 2.3E-09 28.2 5.3 31 29-61 11-41 (47)
198 KOG0321 WD40 repeat-containing 97.9 2.7E-05 5.9E-10 43.6 4.3 59 2-63 335-393 (720)
199 KOG1310 WD40 repeat protein [G 97.9 0.00012 2.7E-09 40.8 6.7 59 2-62 68-126 (758)
200 KOG3914 WD repeat protein WDR4 97.9 5.4E-05 1.2E-09 40.2 5.1 37 25-64 190-226 (390)
201 KOG2110 Uncharacterized conser 97.9 0.00021 4.5E-09 37.9 6.9 55 3-62 192-249 (391)
202 KOG1524 WD40 repeat-containing 97.9 1.4E-05 2.9E-10 44.2 2.3 53 2-60 81-133 (737)
203 KOG2055 WD40 repeat protein [G 97.8 0.00012 2.7E-09 39.8 5.4 62 1-64 230-291 (514)
204 KOG2139 WD40 repeat protein [G 97.8 0.00017 3.8E-09 38.4 5.9 52 4-60 216-267 (445)
205 KOG2106 Uncharacterized conser 97.8 0.00044 9.4E-09 38.3 7.3 32 29-62 447-478 (626)
206 KOG2106 Uncharacterized conser 97.8 0.0003 6.4E-09 38.9 6.6 56 1-60 464-520 (626)
207 KOG1334 WD40 repeat protein [G 97.7 1.8E-05 3.8E-10 43.1 1.7 56 2-62 412-467 (559)
208 KOG2919 Guanine nucleotide-bin 97.7 0.00012 2.5E-09 38.5 4.4 54 5-62 272-328 (406)
209 KOG1587 Cytoplasmic dynein int 97.7 7.7E-05 1.7E-09 41.5 3.9 55 5-62 419-473 (555)
210 PRK01742 tolB translocation pr 97.7 0.00037 8E-09 37.5 6.0 54 5-64 183-239 (429)
211 KOG1523 Actin-related protein 97.7 0.00034 7.4E-09 36.7 5.6 59 2-62 73-131 (361)
212 KOG2919 Guanine nucleotide-bin 97.7 0.00044 9.6E-09 36.5 5.9 39 23-63 244-283 (406)
213 KOG1240 Protein kinase contain 97.7 0.00098 2.1E-08 40.3 7.7 60 1-62 1066-1129(1431)
214 KOG4640 Anaphase-promoting com 97.6 0.00082 1.8E-08 38.0 6.7 35 28-64 60-95 (665)
215 PF11768 DUF3312: Protein of u 97.6 0.0012 2.7E-08 36.8 7.1 34 28-63 258-291 (545)
216 KOG1963 WD40 repeat protein [G 97.6 0.00039 8.5E-09 40.1 5.3 58 2-62 475-539 (792)
217 KOG1645 RING-finger-containing 97.6 0.0012 2.6E-08 35.7 6.6 57 2-63 212-268 (463)
218 KOG1409 Uncharacterized conser 97.5 0.0016 3.4E-08 34.7 6.6 40 21-62 189-228 (404)
219 KOG2321 WD40 repeat protein [G 97.5 0.00088 1.9E-08 37.7 6.0 62 2-65 193-262 (703)
220 KOG0322 G-protein beta subunit 97.5 0.00086 1.9E-08 34.6 5.6 34 30-65 252-285 (323)
221 KOG2055 WD40 repeat protein [G 97.5 0.0013 2.8E-08 36.0 6.4 56 2-62 362-418 (514)
222 PF02239 Cytochrom_D1: Cytochr 97.5 0.0038 8.3E-08 33.4 8.3 56 4-64 14-69 (369)
223 PF10313 DUF2415: Uncharacteri 97.5 0.00084 1.8E-08 25.3 4.9 31 31-62 2-34 (43)
224 KOG0280 Uncharacterized conser 97.5 0.0009 1.9E-08 34.9 5.3 42 19-61 155-196 (339)
225 KOG2394 WD40 protein DMR-N9 [G 97.4 0.00074 1.6E-08 37.7 5.1 32 29-62 290-321 (636)
226 KOG0974 WD-repeat protein WDR6 97.4 0.00061 1.3E-08 40.0 4.7 54 2-61 193-246 (967)
227 KOG2321 WD40 repeat protein [G 97.4 0.00067 1.4E-08 38.1 4.7 51 8-63 157-207 (703)
228 KOG4532 WD40-like repeat conta 97.4 0.0018 4E-08 33.5 5.9 64 1-64 220-285 (344)
229 KOG4190 Uncharacterized conser 97.4 0.00062 1.3E-08 38.4 4.6 58 2-63 753-814 (1034)
230 KOG3881 Uncharacterized conser 97.4 0.00098 2.1E-08 35.7 5.0 57 4-64 224-280 (412)
231 KOG1524 WD40 repeat-containing 97.4 0.0014 3E-08 36.8 5.7 35 25-61 182-216 (737)
232 KOG0649 WD40 repeat protein [G 97.4 0.0034 7.4E-08 32.3 6.6 58 1-63 173-237 (325)
233 KOG1240 Protein kinase contain 97.3 0.00045 9.7E-09 41.6 3.6 37 24-62 1043-1080(1431)
234 KOG4227 WD40 repeat protein [G 97.3 0.00051 1.1E-08 37.2 3.5 61 2-64 74-138 (609)
235 KOG2695 WD40 repeat protein [G 97.3 0.00086 1.9E-08 35.7 4.0 58 2-62 270-330 (425)
236 KOG1273 WD40 repeat protein [G 97.2 0.00074 1.6E-08 35.6 3.6 30 32-63 26-55 (405)
237 KOG2139 WD40 repeat protein [G 97.2 0.0036 7.7E-08 33.7 5.8 36 26-64 193-229 (445)
238 PF02239 Cytochrom_D1: Cytochr 97.2 0.006 1.3E-07 32.7 6.7 57 2-64 54-111 (369)
239 KOG1409 Uncharacterized conser 97.2 0.00066 1.4E-08 36.0 3.0 58 2-63 215-272 (404)
240 PRK05137 tolB translocation pr 97.1 0.0086 1.9E-07 32.5 7.1 54 5-63 225-280 (435)
241 PRK05137 tolB translocation pr 97.1 0.011 2.4E-07 32.1 7.3 52 7-64 183-237 (435)
242 KOG4227 WD40 repeat protein [G 97.1 0.0073 1.6E-07 33.0 6.5 59 2-63 123-181 (609)
243 KOG4547 WD40 repeat-containing 97.1 0.0035 7.5E-08 35.1 5.4 53 5-61 163-220 (541)
244 KOG0771 Prolactin regulatory e 97.0 0.0028 6.1E-08 34.1 4.7 55 2-60 299-353 (398)
245 KOG4532 WD40-like repeat conta 97.0 0.012 2.6E-07 30.7 6.5 55 6-62 180-234 (344)
246 PRK11028 6-phosphogluconolacto 97.0 0.012 2.5E-07 30.7 6.7 56 3-61 9-65 (330)
247 KOG0309 Conserved WD40 repeat- 97.0 0.0005 1.1E-08 39.8 1.8 57 3-62 177-233 (1081)
248 PRK04922 tolB translocation pr 96.9 0.0091 2E-07 32.4 5.9 52 7-64 185-239 (433)
249 KOG1517 Guanine nucleotide bin 96.9 0.0089 1.9E-07 36.3 6.1 55 5-63 1186-1241(1387)
250 KOG4547 WD40 repeat-containing 96.9 0.014 2.9E-07 32.9 6.4 56 2-64 120-175 (541)
251 KOG2315 Predicted translation 96.9 0.0087 1.9E-07 33.6 5.7 54 2-62 332-391 (566)
252 PF15492 Nbas_N: Neuroblastoma 96.8 0.0062 1.4E-07 31.6 4.6 32 29-62 229-260 (282)
253 PRK01742 tolB translocation pr 96.8 0.028 6E-07 30.6 7.3 52 6-63 228-282 (429)
254 PRK11028 6-phosphogluconolacto 96.8 0.016 3.5E-07 30.2 6.2 55 5-62 101-157 (330)
255 COG4946 Uncharacterized protei 96.8 0.03 6.6E-07 31.5 7.2 57 2-64 377-434 (668)
256 KOG1334 WD40 repeat protein [G 96.8 0.0078 1.7E-07 33.5 4.9 62 2-64 205-266 (559)
257 PRK04922 tolB translocation pr 96.7 0.031 6.8E-07 30.4 7.1 54 6-64 228-283 (433)
258 KOG3621 WD40 repeat-containing 96.6 0.017 3.7E-07 33.4 5.8 60 1-62 93-155 (726)
259 KOG2079 Vacuolar assembly/sort 96.6 0.0022 4.7E-08 38.4 2.2 35 28-64 129-163 (1206)
260 TIGR02800 propeller_TolB tol-p 96.5 0.045 9.9E-07 29.3 7.6 53 6-63 214-268 (417)
261 PRK03629 tolB translocation pr 96.5 0.053 1.1E-06 29.7 7.2 53 6-64 223-278 (429)
262 PF08553 VID27: VID27 cytoplas 96.4 0.0097 2.1E-07 35.0 4.2 54 1-60 593-646 (794)
263 PRK02889 tolB translocation pr 96.4 0.043 9.4E-07 29.9 6.3 38 25-64 191-231 (427)
264 PF15492 Nbas_N: Neuroblastoma 96.4 0.014 3.1E-07 30.3 4.2 28 33-62 47-74 (282)
265 KOG0309 Conserved WD40 repeat- 96.3 0.0064 1.4E-07 35.6 3.1 39 24-63 109-147 (1081)
266 KOG3617 WD40 and TPR repeat-co 96.3 0.044 9.5E-07 33.1 6.3 52 5-61 80-131 (1416)
267 KOG2041 WD40 repeat protein [G 96.2 0.018 3.8E-07 33.9 4.4 61 2-64 32-104 (1189)
268 KOG1272 WD40-repeat-containing 96.2 0.0065 1.4E-07 33.6 2.5 57 3-64 228-284 (545)
269 PRK02889 tolB translocation pr 96.1 0.089 1.9E-06 28.7 6.6 50 6-60 220-269 (427)
270 KOG3914 WD repeat protein WDR4 96.0 0.025 5.5E-07 30.6 4.2 34 25-60 147-180 (390)
271 PLN02919 haloacid dehalogenase 96.0 0.18 3.9E-06 30.9 8.0 59 4-64 823-891 (1057)
272 KOG4714 Nucleoporin [Nuclear s 95.9 0.028 6E-07 29.3 3.9 32 31-63 181-212 (319)
273 PRK03629 tolB translocation pr 95.7 0.15 3.3E-06 27.9 7.2 52 7-64 180-234 (429)
274 TIGR02800 propeller_TolB tol-p 95.7 0.14 3.1E-06 27.5 6.9 52 7-64 171-225 (417)
275 KOG1538 Uncharacterized conser 95.7 0.051 1.1E-06 31.9 4.6 54 1-60 239-292 (1081)
276 KOG1275 PAB-dependent poly(A) 95.6 0.031 6.6E-07 33.6 3.8 54 2-62 193-255 (1118)
277 PF11715 Nup160: Nucleoporin N 95.6 0.069 1.5E-06 30.0 4.9 31 32-64 217-251 (547)
278 PRK00178 tolB translocation pr 95.5 0.17 3.8E-06 27.5 7.1 51 8-64 181-234 (430)
279 KOG4190 Uncharacterized conser 95.5 0.053 1.2E-06 31.2 4.2 60 3-64 848-909 (1034)
280 PRK00178 tolB translocation pr 95.3 0.21 4.7E-06 27.2 7.2 53 7-64 224-278 (430)
281 PRK04792 tolB translocation pr 94.9 0.31 6.6E-06 27.0 7.1 53 7-64 243-297 (448)
282 KOG2395 Protein involved in va 94.7 0.075 1.6E-06 30.3 3.5 54 1-60 446-499 (644)
283 KOG4497 Uncharacterized conser 94.6 0.13 2.7E-06 27.9 3.9 29 30-60 211-239 (447)
284 TIGR02658 TTQ_MADH_Hv methylam 94.5 0.39 8.5E-06 26.1 8.0 55 6-64 279-333 (352)
285 PF10282 Lactonase: Lactonase, 94.5 0.37 8E-06 25.7 7.6 54 5-60 266-321 (345)
286 KOG0882 Cyclophilin-related pe 94.1 0.011 2.4E-07 32.8 -0.4 59 2-62 26-85 (558)
287 PF04762 IKI3: IKI3 family; I 94.0 0.84 1.8E-05 28.0 6.8 29 29-59 120-148 (928)
288 KOG1912 WD40 repeat protein [G 94.0 0.18 3.9E-06 30.3 4.0 58 3-64 86-146 (1062)
289 PRK04792 tolB translocation pr 93.8 0.63 1.4E-05 25.8 6.4 36 27-64 215-253 (448)
290 KOG1645 RING-finger-containing 93.8 0.11 2.3E-06 28.7 2.8 39 24-63 188-226 (463)
291 PRK01029 tolB translocation pr 93.6 0.6 1.3E-05 25.8 5.5 33 30-64 327-362 (428)
292 COG4946 Uncharacterized protei 93.4 0.86 1.9E-05 26.2 6.8 53 6-63 423-479 (668)
293 KOG2079 Vacuolar assembly/sort 93.2 1.2 2.5E-05 28.0 6.4 48 2-54 148-198 (1206)
294 COG2706 3-carboxymuconate cycl 92.9 0.84 1.8E-05 24.8 6.2 51 8-62 169-222 (346)
295 KOG1064 RAVE (regulator of V-A 92.9 0.34 7.3E-06 31.9 4.2 57 1-61 2225-2281(2439)
296 TIGR03300 assembly_YfgL outer 92.9 0.82 1.8E-05 24.5 6.2 20 45-64 322-341 (377)
297 KOG2444 WD40 repeat protein [G 92.8 0.3 6.5E-06 25.1 3.3 12 50-61 166-177 (238)
298 KOG1832 HIV-1 Vpr-binding prot 92.4 0.46 1E-05 29.4 4.2 39 24-64 1096-1134(1516)
299 PF07569 Hira: TUP1-like enhan 92.3 0.51 1.1E-05 23.8 3.9 24 39-64 20-43 (219)
300 TIGR02658 TTQ_MADH_Hv methylam 91.7 1.3 2.8E-05 24.2 7.2 52 6-64 27-88 (352)
301 PF08553 VID27: VID27 cytoplas 91.4 0.94 2E-05 27.4 4.7 55 2-60 548-605 (794)
302 KOG2377 Uncharacterized conser 91.1 1.9 4E-05 24.9 5.8 33 27-61 64-96 (657)
303 PF07676 PD40: WD40-like Beta 90.7 0.43 9.4E-06 16.9 5.2 29 29-58 8-38 (39)
304 KOG2395 Protein involved in va 90.7 1.4 3E-05 25.7 4.7 16 45-60 443-458 (644)
305 PRK01029 tolB translocation pr 90.4 1.9 4.2E-05 23.9 7.2 53 6-63 351-405 (428)
306 KOG1354 Serine/threonine prote 90.2 0.46 1E-05 26.0 2.6 33 29-62 213-245 (433)
307 COG2706 3-carboxymuconate cycl 90.2 1.9 4.2E-05 23.5 6.7 58 5-64 110-178 (346)
308 PF13360 PQQ_2: PQQ-like domai 89.8 1.5 3.2E-05 21.7 5.5 57 4-64 84-143 (238)
309 KOG2066 Vacuolar assembly/sort 89.6 1.8 4E-05 26.2 4.7 50 1-57 88-142 (846)
310 KOG2314 Translation initiation 89.5 1 2.3E-05 26.2 3.7 32 31-64 251-293 (698)
311 KOG2041 WD40 repeat protein [G 89.2 1.7 3.7E-05 26.5 4.4 56 3-61 90-145 (1189)
312 PF07569 Hira: TUP1-like enhan 88.9 1.9 4.2E-05 21.8 5.8 56 3-61 29-95 (219)
313 PF10168 Nup88: Nuclear pore c 88.7 2.9 6.2E-05 25.2 5.1 33 29-63 146-181 (717)
314 KOG0882 Cyclophilin-related pe 88.6 0.73 1.6E-05 26.2 2.7 33 30-64 202-234 (558)
315 PF06433 Me-amine-dh_H: Methyl 88.3 2.9 6.2E-05 22.9 7.4 52 8-64 271-323 (342)
316 KOG1832 HIV-1 Vpr-binding prot 87.8 0.49 1.1E-05 29.3 1.8 57 1-61 1118-1175(1516)
317 KOG2314 Translation initiation 87.4 4.3 9.3E-05 24.0 5.8 50 6-59 282-332 (698)
318 PRK04043 tolB translocation pr 87.1 3.6 7.9E-05 22.9 8.3 53 6-63 213-267 (419)
319 PLN02919 haloacid dehalogenase 87.1 5.6 0.00012 25.1 7.8 31 32-63 742-772 (1057)
320 PRK02888 nitrous-oxide reducta 86.9 4.8 0.0001 24.0 6.8 55 6-62 296-352 (635)
321 PF04053 Coatomer_WDAD: Coatom 86.7 4.1 8.8E-05 23.1 6.3 48 5-60 125-172 (443)
322 COG0823 TolB Periplasmic compo 86.4 4.2 9.1E-05 22.9 5.0 30 33-63 241-272 (425)
323 COG5170 CDC55 Serine/threonine 86.0 2.4 5.1E-05 23.3 3.6 32 29-63 280-311 (460)
324 KOG1008 Uncharacterized conser 85.8 0.27 5.8E-06 28.9 0.2 55 4-61 127-184 (783)
325 PF12234 Rav1p_C: RAVE protein 85.5 5.8 0.00013 23.7 7.1 51 5-59 50-102 (631)
326 PF14655 RAB3GAP2_N: Rab3 GTPa 85.1 5 0.00011 22.6 6.4 38 24-63 302-339 (415)
327 PF00930 DPPIV_N: Dipeptidyl p 85.1 4.3 9.4E-05 21.9 5.7 51 6-63 23-73 (353)
328 KOG1354 Serine/threonine prote 84.7 3.2 6.9E-05 23.1 3.7 30 29-60 25-54 (433)
329 KOG3621 WD40 repeat-containing 84.7 1.7 3.7E-05 26.0 2.9 57 2-62 51-107 (726)
330 PF01011 PQQ: PQQ enzyme repea 84.6 1.4 2.9E-05 15.7 3.3 19 46-64 3-21 (38)
331 KOG1912 WD40 repeat protein [G 84.6 1.7 3.6E-05 26.6 2.8 55 7-63 499-553 (1062)
332 PF12768 Rax2: Cortical protei 84.4 4.5 9.7E-05 21.5 6.4 53 6-63 16-74 (281)
333 smart00564 PQQ beta-propeller 84.4 1.2 2.6E-05 14.9 3.1 20 45-64 8-27 (33)
334 KOG2066 Vacuolar assembly/sort 83.2 6.7 0.00014 24.1 4.8 23 39-63 81-103 (846)
335 KOG1920 IkappaB kinase complex 83.1 10 0.00022 24.6 6.0 29 29-59 109-137 (1265)
336 PF04841 Vps16_N: Vps16, N-ter 82.8 6.3 0.00014 22.0 6.6 48 7-61 62-109 (410)
337 KOG2315 Predicted translation 82.8 7.5 0.00016 22.8 7.0 34 29-62 270-303 (566)
338 PF08596 Lgl_C: Lethal giant l 82.7 6.4 0.00014 22.0 6.2 41 20-63 77-117 (395)
339 KOG4649 PQQ (pyrrolo-quinoline 82.0 6.1 0.00013 21.3 5.1 25 36-62 100-124 (354)
340 PF13360 PQQ_2: PQQ-like domai 81.6 4.9 0.00011 19.9 6.7 56 5-64 2-57 (238)
341 COG5167 VID27 Protein involved 81.2 5 0.00011 23.7 3.8 55 1-61 578-632 (776)
342 KOG1275 PAB-dependent poly(A) 80.1 10 0.00023 24.0 4.9 30 29-60 312-341 (1118)
343 TIGR03300 assembly_YfgL outer 80.0 7.5 0.00016 21.0 6.4 20 45-64 107-126 (377)
344 PF14783 BBS2_Mid: Ciliary BBS 78.6 5.2 0.00011 18.3 6.7 50 1-59 20-69 (111)
345 PF10282 Lactonase: Lactonase, 78.3 8.6 0.00019 20.7 8.0 57 4-62 60-118 (345)
346 PRK04043 tolB translocation pr 78.1 9.9 0.00022 21.3 6.7 54 6-64 257-312 (419)
347 TIGR02276 beta_rpt_yvtn 40-res 77.8 2.7 6E-05 14.7 3.6 12 51-62 12-23 (42)
348 PF03088 Str_synth: Strictosid 76.8 5.3 0.00011 17.5 6.4 49 4-58 35-85 (89)
349 PF15390 DUF4613: Domain of un 74.3 9.9 0.00021 22.8 3.7 32 29-61 155-186 (671)
350 PF07433 DUF1513: Protein of u 73.7 12 0.00027 20.3 5.1 34 30-64 217-250 (305)
351 PRK14751 tetracycline resistan 73.6 3.1 6.6E-05 13.8 1.1 11 51-61 13-23 (28)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.8 16 0.00035 21.2 5.7 20 45-64 474-493 (527)
353 KOG2114 Vacuolar assembly/sort 72.2 22 0.00047 22.4 5.1 50 7-58 93-152 (933)
354 KOG3616 Selective LIM binding 71.4 16 0.00034 23.1 4.1 30 31-62 16-45 (1636)
355 KOG4460 Nuclear pore complex, 71.1 13 0.00029 22.1 3.7 31 32-63 168-200 (741)
356 PF07433 DUF1513: Protein of u 70.5 15 0.00033 20.0 7.5 49 8-61 30-85 (305)
357 KOG1983 Tomosyn and related SN 68.7 11 0.00024 23.8 3.3 24 38-63 243-266 (993)
358 KOG1916 Nuclear protein, conta 67.3 7.2 0.00016 24.7 2.3 23 36-60 242-264 (1283)
359 PF10214 Rrn6: RNA polymerase 67.2 23 0.00049 21.7 4.2 29 31-60 147-175 (765)
360 KOG1920 IkappaB kinase complex 66.6 30 0.00066 22.7 4.7 32 29-62 289-323 (1265)
361 PF12657 TFIIIC_delta: Transcr 64.9 15 0.00033 17.8 4.3 30 31-61 87-121 (173)
362 KOG4499 Ca2+-binding protein R 64.8 20 0.00043 19.2 4.0 33 4-39 231-263 (310)
363 PRK11138 outer membrane biogen 64.5 22 0.00047 19.5 6.4 20 45-64 337-356 (394)
364 PF00780 CNH: CNH domain; Int 62.8 20 0.00043 18.4 5.8 53 2-62 13-65 (275)
365 PF08801 Nucleoporin_N: Nup133 62.7 25 0.00054 19.6 3.8 29 32-62 192-220 (422)
366 PF13570 PQQ_3: PQQ-like domai 62.3 7.9 0.00017 13.7 3.3 18 45-62 23-40 (40)
367 KOG2467 Glycine/serine hydroxy 61.8 13 0.00029 21.1 2.5 18 45-62 343-360 (477)
368 PF04762 IKI3: IKI3 family; I 60.2 42 0.00091 21.4 6.6 32 28-62 303-334 (928)
369 PF14761 HPS3_N: Hermansky-Pud 59.7 24 0.00051 18.3 4.6 44 4-51 36-79 (215)
370 PF12341 DUF3639: Protein of u 59.5 8.2 0.00018 13.0 3.5 24 31-58 3-26 (27)
371 PF04841 Vps16_N: Vps16, N-ter 59.3 30 0.00066 19.5 4.9 28 30-59 217-244 (410)
372 COG3386 Gluconolactonase [Carb 59.2 28 0.0006 18.9 6.1 31 29-61 162-193 (307)
373 PF09631 Sen15: Sen15 protein; 59.0 15 0.00032 16.3 2.1 20 44-63 75-94 (101)
374 PF02897 Peptidase_S9_N: Proly 54.7 35 0.00077 18.8 4.7 30 33-64 127-161 (414)
375 PF01731 Arylesterase: Arylest 54.5 19 0.00041 15.7 4.0 29 31-61 55-84 (86)
376 COG0512 PabA Anthranilate/para 54.3 24 0.00053 17.9 2.6 19 24-42 157-175 (191)
377 COG5354 Uncharacterized protei 53.9 46 0.00099 19.8 5.6 36 27-62 272-307 (561)
378 PF07865 DUF1652: Protein of u 53.8 18 0.00039 15.1 2.1 11 53-63 27-37 (69)
379 PF08954 DUF1900: Domain of un 53.5 25 0.00054 16.7 2.7 36 3-39 30-66 (136)
380 PF08149 BING4CT: BING4CT (NUC 52.6 21 0.00045 15.5 3.5 27 29-57 9-35 (80)
381 smart00284 OLF Olfactomedin-li 52.4 35 0.00077 18.2 5.6 51 8-61 202-252 (255)
382 KOG2280 Vacuolar assembly/sort 50.9 51 0.0011 20.7 3.8 28 31-61 85-112 (829)
383 PF14583 Pectate_lyase22: Olig 50.6 46 0.001 19.0 6.5 25 33-58 354-378 (386)
384 PF02191 OLF: Olfactomedin-lik 48.2 42 0.0009 17.7 6.0 51 8-61 197-247 (250)
385 PHA02713 hypothetical protein; 47.8 58 0.0013 19.3 4.0 52 8-64 482-536 (557)
386 PF01436 NHL: NHL repeat; Int 46.0 15 0.00033 12.0 3.5 22 33-56 5-26 (28)
387 PF13964 Kelch_6: Kelch motif 45.4 20 0.00043 13.2 2.3 10 54-63 29-38 (50)
388 PF14339 DUF4394: Domain of un 43.6 51 0.0011 17.4 7.2 34 29-64 26-59 (236)
389 COG3490 Uncharacterized protei 41.7 64 0.0014 18.0 4.3 39 6-48 140-178 (366)
390 PF08076 TetM_leader: Tetracyc 40.8 17 0.00036 12.2 0.6 9 52-60 14-22 (28)
391 PF14727 PHTB1_N: PTHB1 N-term 39.8 76 0.0016 18.3 3.6 18 45-62 39-56 (418)
392 PF10395 Utp8: Utp8 family; I 38.2 1E+02 0.0022 19.2 4.4 29 30-60 130-158 (670)
393 PF00843 Arena_nucleocap: Aren 37.4 15 0.00033 21.2 0.5 14 50-63 149-162 (533)
394 PF10584 Proteasome_A_N: Prote 36.6 20 0.00044 11.6 0.6 7 36-42 7-13 (23)
395 TIGR00566 trpG_papA glutamine 35.4 62 0.0013 16.0 3.0 14 29-42 160-173 (188)
396 KOG3630 Nuclear pore complex, 35.0 1.4E+02 0.0029 20.3 4.0 29 30-60 199-227 (1405)
397 PF08728 CRT10: CRT10; InterP 34.9 1.2E+02 0.0026 19.1 4.1 33 28-60 209-245 (717)
398 PRK08857 para-aminobenzoate sy 34.5 65 0.0014 16.0 2.8 14 29-42 164-177 (193)
399 KOG2109 WD40 repeat protein [G 32.6 69 0.0015 20.0 2.5 28 22-51 308-335 (788)
400 PF14782 BBS2_C: Ciliary BBSom 31.9 1.1E+02 0.0024 17.8 3.3 28 30-58 15-42 (431)
401 PF08450 SGL: SMP-30/Gluconola 31.6 78 0.0017 16.1 7.7 29 31-61 185-213 (246)
402 PF06977 SdiA-regulated: SdiA- 30.8 90 0.002 16.5 5.1 37 24-61 16-52 (248)
403 KOG1559 Gamma-glutamyl hydrola 30.0 1E+02 0.0022 16.8 2.9 21 22-42 251-271 (340)
404 COG3204 Uncharacterized protei 29.2 1.1E+02 0.0024 17.0 4.0 30 27-58 83-112 (316)
405 PF03178 CPSF_A: CPSF A subuni 29.0 1E+02 0.0022 16.5 6.3 31 29-61 172-202 (321)
406 KOG4521 Nuclear pore complex, 28.6 79 0.0017 21.3 2.4 19 45-63 285-303 (1480)
407 PRK07340 ornithine cyclodeamin 28.5 86 0.0019 17.0 2.4 14 51-64 81-94 (304)
408 PRK08007 para-aminobenzoate sy 27.9 89 0.0019 15.5 2.9 14 29-42 159-172 (187)
409 PF02870 Methyltransf_1N: 6-O- 27.5 58 0.0013 13.3 1.9 19 38-58 9-27 (77)
410 TIGR01153 psbC photosystem II 27.3 91 0.002 18.1 2.3 21 38-63 312-332 (432)
411 cd00216 PQQ_DH Dehydrogenases 27.1 1.4E+02 0.003 17.4 6.1 20 45-64 408-427 (488)
412 CHL00035 psbC photosystem II 4 26.9 92 0.002 18.3 2.3 21 38-63 344-364 (473)
413 PF07995 GSDH: Glucose / Sorbo 26.5 1.2E+02 0.0026 16.6 6.3 25 29-55 305-329 (331)
414 PF06200 tify: tify domain; I 26.5 48 0.001 12.0 1.1 9 4-12 12-20 (36)
415 cd01742 GATase1_GMP_Synthase T 26.4 90 0.0019 15.1 2.6 13 30-42 156-168 (181)
416 PF14269 Arylsulfotran_2: Aryl 25.9 1.2E+02 0.0027 16.5 4.4 31 32-64 146-176 (299)
417 cd06919 Asp_decarbox Aspartate 25.7 86 0.0019 14.6 4.7 16 6-21 41-56 (111)
418 TIGR00223 panD L-aspartate-alp 25.4 92 0.002 14.8 4.7 16 6-21 42-57 (126)
419 PRK05449 aspartate alpha-decar 25.1 94 0.002 14.8 4.7 16 6-21 42-57 (126)
420 KOG1520 Predicted alkaloid syn 25.0 1.5E+02 0.0032 17.1 3.3 25 32-58 221-247 (376)
421 PF01394 Clathrin_propel: Clat 24.6 52 0.0011 11.7 1.5 9 5-13 28-36 (37)
422 COG1637 Predicted nuclease of 24.5 1.3E+02 0.0028 16.3 3.1 27 34-62 72-98 (253)
423 TIGR02608 delta_60_rpt delta-6 23.5 69 0.0015 12.7 4.4 9 34-42 5-13 (55)
424 PF11029 DAZAP2: DAZ associate 23.4 62 0.0013 15.6 1.2 22 35-58 116-137 (137)
425 PRK07649 para-aminobenzoate/an 23.3 1.2E+02 0.0025 15.3 2.9 13 30-42 160-172 (195)
426 cd01744 GATase1_CPSase Small c 22.8 1.1E+02 0.0024 14.9 2.7 14 29-42 151-164 (178)
427 TIGR03074 PQQ_membr_DH membran 22.7 2E+02 0.0044 18.3 3.3 20 45-64 693-713 (764)
428 cd01747 GATase1_Glutamyl_Hydro 22.7 1.4E+02 0.003 16.0 2.7 18 25-42 198-215 (273)
429 TIGR00888 guaA_Nterm GMP synth 22.6 1.1E+02 0.0025 15.0 2.7 13 30-42 156-168 (188)
430 PRK06046 alanine dehydrogenase 22.3 1.4E+02 0.003 16.4 2.5 14 52-65 86-99 (326)
431 PF14795 Leucyl-specific: Leuc 22.2 74 0.0016 12.6 1.6 10 50-59 46-55 (56)
432 PF12566 DUF3748: Protein of u 22.2 1.1E+02 0.0023 14.5 1.9 23 32-56 70-92 (122)
433 TIGR03606 non_repeat_PQQ dehyd 21.8 1.9E+02 0.004 17.1 4.3 31 30-62 30-60 (454)
434 PF14781 BBS2_N: Ciliary BBSom 21.5 1.2E+02 0.0026 14.7 3.9 14 46-59 13-26 (136)
435 PF09081 DUF1921: Domain of un 21.4 75 0.0016 12.3 2.4 11 49-59 41-51 (51)
436 cd01743 GATase1_Anthranilate_S 21.4 1.2E+02 0.0026 14.8 3.0 13 30-42 159-171 (184)
437 PRK05670 anthranilate synthase 21.3 1.2E+02 0.0027 14.9 2.8 14 29-42 159-172 (189)
438 COG0853 PanD Aspartate 1-decar 20.8 1.2E+02 0.0026 14.5 4.6 16 6-21 41-56 (126)
439 PRK08618 ornithine cyclodeamin 20.6 1.7E+02 0.0036 16.1 2.5 14 52-65 84-97 (325)
440 KOG1897 Damage-specific DNA bi 20.4 2.8E+02 0.0061 18.6 5.2 53 3-60 845-897 (1096)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=9.3e-16 Score=78.98 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=51.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+-|.++++||+.+... ...+++|...|.+++|+|++. .|++++.|+.|++||.++|+
T Consensus 133 GsGD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 133 GSGDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcc--hhhccccCCeEEEecCCCCC
Confidence 67789999999987543 337899999999999999999 99999999999999998875
No 2
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=8.2e-15 Score=74.92 Aligned_cols=58 Identities=31% Similarity=0.548 Sum_probs=52.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|++|++||++++..+- .+.+|...|+.++|+|.|+ +|+++..|+++++||+++++
T Consensus 310 ~SrDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ecccceEEEEeccCCeEEE---EEecccceeeeeEEcCCCe--EEEEEecCCcEEEEEeccce
Confidence 6789999999999875443 7899999999999999999 99999999999999998764
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.59 E-value=2.1e-14 Score=78.14 Aligned_cols=59 Identities=29% Similarity=0.524 Sum_probs=53.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.|.++++||+.++.. ++.|.||.++|.+++|+|++. +|++++.|+.|.+||+.+|+
T Consensus 552 TGSsD~tVRlWDv~~G~~---VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 552 TGSSDRTVRLWDVSTGNS---VRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cCCCCceEEEEEcCCCcE---EEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCc
Confidence 478899999999998754 447899999999999999999 99999999999999998875
No 4
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.8e-13 Score=71.84 Aligned_cols=59 Identities=22% Similarity=0.459 Sum_probs=50.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|.++++||+.... ..++.+++|...|.+++|+|.+. .+++|+.|++|++||+++++
T Consensus 221 ~s~D~tiriwd~~~~~--~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDG--RNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ecCCceEEEeeccCCC--eEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCe
Confidence 5779999999994331 22347889999999999999997 99999999999999999864
No 5
>PTZ00421 coronin; Provisional
Probab=99.49 E-value=5e-13 Score=71.49 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=50.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+.|++||+.++... ..+.+|...|.+++|+|++. .+++++.|+.|++||+++++
T Consensus 144 gs~DgtVrIWDl~tg~~~---~~l~~h~~~V~sla~spdG~--lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAV---EVIKCHSDQITSLEWNLDGS--LLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred EeCCCEEEEEECCCCeEE---EEEcCCCCceEEEEEECCCC--EEEEecCCCEEEEEECCCCc
Confidence 567999999999876433 35778999999999999999 99999999999999998764
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.47 E-value=5.4e-13 Score=66.62 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=50.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++|+++++||+.++. ..+.|.+|+..|.+++|++++. .+.+++.|.+|.+|+....
T Consensus 81 ~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred ccccceEEEEEecCCc---EEEEEEecCCceEEEEecCCCc--eeecCCCcceeeeeeeccc
Confidence 6789999999998864 3347999999999999999999 8999999999999998643
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=8.9e-13 Score=69.96 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|++|++||+.++... ..+.+|.+.|.+++|++++. ++++++.|+.+++||+.++.
T Consensus 264 gs~D~tvriWd~~~~~~~---~~l~~hs~~is~~~f~~d~~--~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTGECV---RKLKGHSDGISGLAFSPDGN--LLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred ecCCCcEEEEeccCCeEE---EeeeccCCceEEEEECCCCC--EEEEcCCCccEEEEECCCCc
Confidence 678999999999885433 37899999999999999999 99999999999999998875
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.45 E-value=5.7e-13 Score=66.54 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=51.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+++|+++++||+.+-+.. ..+.+|++.++.+.++|++. +.++|+.|+.+.+||+..++
T Consensus 168 ~s~DktvKvWnl~~~~l~---~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLR---TTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred ccCCceEEEEccCCcchh---hccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCc
Confidence 678999999999874433 36789999999999999999 99999999999999998875
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.44 E-value=9.8e-13 Score=67.76 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=51.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.|..+++||+.+.... ..+.+|+.+|..+.+.|-++ .+++|+.|++|++||++.|+
T Consensus 252 t~grDst~RvWDiRtr~~V---~~l~GH~~~V~~V~~~~~dp--qvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASV---HVLSGHTNPVASVMCQPTDP--QVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred ecCCcceEEEeeecccceE---EEecCCCCcceeEEeecCCC--ceEEecCCceEEEeeeccCc
Confidence 3678999999999886533 37899999999999999888 79999999999999999875
No 10
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.43 E-value=9.4e-13 Score=67.96 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=49.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.|+.|++|+|||+..++....+ ..+.|.+.|+.++|+...+ +|++|+.||++.+||+++-
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred eeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhc
Confidence 3788999999999876422211 3478999999999998888 9999999999999999864
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.42 E-value=9.6e-14 Score=72.09 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=51.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.||++++|++.+.. ++..+.+|..+|..++|+|.+. +|.|++.|.+.++||++++.
T Consensus 236 t~s~Dgtvklw~~~~e~---~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQET---PLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKS 294 (459)
T ss_pred eeccCCceeeeccCCCc---chhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccch
Confidence 36789999999998643 3346889999999999999999 99999999999999998864
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.42 E-value=9.4e-13 Score=68.52 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=49.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+.|..-+|||+.++... +.+.+|..+|..|+|+|.+. .++||+.|+++++||++..
T Consensus 321 GGlD~~~RvWDlRtgr~i---m~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCI---MFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cCccchhheeecccCcEE---EEecccccceeeEeECCCce--EEeecCCCCcEEEeeeccc
Confidence 567777889999987543 36889999999999999999 9999999999999999754
No 13
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.42 E-value=2.1e-12 Score=64.13 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=50.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..++.||..++..... ..++|.++|.|+.|+|++. ..++++.||+|++|....++
T Consensus 242 Gged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCc--eeeccCCCceEEEEEecCCC
Confidence 66788899999998765542 1378999999999999999 99999999999999887654
No 14
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.41 E-value=5.2e-12 Score=46.53 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=33.4
Q ss_pred eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 22 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
+..+.+|.+.|.+++|+|++. ++++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~--~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGN--FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSS--EEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccc--cceeeCCCCEEEEEC
Confidence 457889999999999999998 999999999999997
No 15
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.41 E-value=2.2e-12 Score=65.75 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=53.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|.+|++|++++...........+|++.|.+++|++++. .+++++.|.++.+|++..
T Consensus 154 ~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 154 ASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecCh
Confidence 67899999999999876665566789999999999999999 999999999999999874
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.39 E-value=1.1e-12 Score=68.24 Aligned_cols=58 Identities=14% Similarity=0.310 Sum_probs=50.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|+.|+|||..-.+ ..+.+.+|.-.|.+++|+|... ++++++.|..|++||.++|+
T Consensus 198 ~SdDg~ikiWdf~~~k---ee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 198 CSDDGTIKIWDFRMPK---EERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred ecCCCeEEEEeccCCc---hhheeccCCCCcceeccCCccc--eeEEccCCceeEeecCCCcc
Confidence 6789999999986433 2235789999999999999999 99999999999999999885
No 17
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.5e-12 Score=62.97 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=50.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++|++||+|+........ .+.+|+..|...+|+|..++ ++++++.|+++++||++..
T Consensus 123 sSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 123 SSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSP 180 (311)
T ss_pred eccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCC
Confidence 5889999999987654444 69999999999999998776 8999999999999999753
No 18
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=1.8e-12 Score=67.72 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=50.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|+.|+.|+||+..+++... .+.||...|++++|+|..+. .+++++.|++|++|...
T Consensus 457 SGSED~kvyIWhr~sgkll~---~LsGHs~~vNcVswNP~~p~-m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLA---VLSGHSKTVNCVSWNPADPE-MFASASDDGTIRIWGPS 513 (519)
T ss_pred ecCCCceEEEEEccCCceeE---eecCCcceeeEEecCCCCHH-HhhccCCCCeEEEecCC
Confidence 37889999999998876555 78999999999999998886 89999999999999765
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=7.3e-12 Score=61.83 Aligned_cols=57 Identities=23% Similarity=0.446 Sum_probs=50.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+.|..+.+||..+++... .+.+|.+.|+.++|+.+.. .+++++.|.++++||.++.
T Consensus 77 ~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred CCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccC
Confidence 5668899999999987554 7999999999999998888 9999999999999999865
No 20
>PTZ00421 coronin; Provisional
Probab=99.36 E-value=8.4e-12 Score=66.91 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=49.5
Q ss_pred ccccCeEEEEECCCCce----EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|+.|++||+..... ..+...+.+|...|.+++|+|.... ++++++.|+.|++||+.+++
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCe
Confidence 67899999999875421 1234467889999999999998643 89999999999999998763
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.36 E-value=4.5e-12 Score=63.83 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=51.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..-++||+..+... +.|.+|.+.|+.++|+|.+. -+++|+.|++.+++|++..+
T Consensus 205 g~cD~~aklWD~R~~~c~---qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCV---QTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cccccceeeeeccCccee---EeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCc
Confidence 678999999999876433 37999999999999999999 89999999999999998753
No 22
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.6e-12 Score=65.42 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=51.0
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|..||.+.|||+.+... -+.+.+|..+|.+++|++++. .|++++.|..+.+||+..|.
T Consensus 40 vGc~nG~vvI~D~~T~~i---ar~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDTFRI---ARMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred eeccCCcEEEEEccccch---hhhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCC
Confidence 367899999999987432 235789999999999999999 99999999999999998874
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.36 E-value=1.5e-12 Score=67.13 Aligned_cols=57 Identities=19% Similarity=0.476 Sum_probs=47.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~ 65 (65)
|..|++|+|||..+..... .+.+|++.|.|++| +.. .+++|++|.++++||+.+|++
T Consensus 213 GlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~r--viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DER--VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cce--EEEecCCCceEEEEeccCCch
Confidence 6679999999987643333 57899999999998 566 899999999999999999864
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.36 E-value=8.9e-12 Score=61.85 Aligned_cols=60 Identities=28% Similarity=0.460 Sum_probs=52.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+++.|.+++||..++. +.....+.+|...+..++|+.++. +|++++.|+++++|++..++
T Consensus 232 t~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~--YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE--YLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc--EEEecCCCCceeecccccCc
Confidence 3678999999999875 333446889999999999999999 99999999999999998875
No 25
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.36 E-value=1.6e-12 Score=69.40 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=51.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|..||.|.|||+.+.. .++.|++|++.+.|+..++++. .|.+|+.|.+++.||+++++
T Consensus 527 ccsdGnI~vwDLhnq~---~VrqfqGhtDGascIdis~dGt--klWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQT---LVRQFQGHTDGASCIDISKDGT--KLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred eccCCcEEEEEcccce---eeecccCCCCCceeEEecCCCc--eeecCCCccceeehhhhhhh
Confidence 5679999999998743 4558999999999999999999 89999999999999999875
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.35 E-value=6.7e-12 Score=64.79 Aligned_cols=58 Identities=22% Similarity=0.485 Sum_probs=51.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.|+.|++++|||+.++.... .+.+|-..++.+++++..+ ++++++.|+.|+.||++..
T Consensus 168 tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEEechhh
Confidence 36889999999999876443 6788999999999999999 9999999999999999754
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.35 E-value=1.1e-11 Score=61.58 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=50.2
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.....|++||+.+.. ..++..+.+|+..|..+.|..++. ..++++.||++++||++..
T Consensus 58 a~~qhvRlyD~~S~n-p~Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~ 115 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNN-PNPVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSL 115 (311)
T ss_pred ccCCeeEEEEccCCC-CCceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCc
Confidence 345679999998764 446778999999999999999999 9999999999999999863
No 28
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.35 E-value=6.3e-12 Score=65.90 Aligned_cols=57 Identities=26% Similarity=0.495 Sum_probs=49.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..|+.+++||+..+.... .|.+|+++|..++|+..|. ++++++.|+.|++||++.-
T Consensus 365 gt~d~~vkiwdlks~~~~a---~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVA---KFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKL 421 (506)
T ss_pred cCCCceEEEEEcCCccccc---cCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhh
Confidence 5678999999998765444 6899999999999998888 9999999999999999853
No 29
>PTZ00420 coronin; Provisional
Probab=99.33 E-value=2.1e-11 Score=66.31 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=48.6
Q ss_pred ccccCeEEEEECCCCce-----EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|+.|++||+.+... ..+...+.+|...|.+++|+|.+.. ++++++.|+.|++||+++++
T Consensus 93 gS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEK 159 (568)
T ss_pred EeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCc
Confidence 67899999999875321 1123356789999999999998873 56789999999999998764
No 30
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.33 E-value=9.2e-12 Score=64.42 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=50.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|+.||+++|||+..-+...++..++-|..+|.++.|+|.... .+++++.|..|.+||+.
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLS 378 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEee
Confidence 3678999999999764444566789999999999999997665 78888999999999984
No 31
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=7e-12 Score=63.35 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=50.2
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++++|++|++|+++......+ .....|.+++.+++|+.++. .+++++.|+.+++||+.+++
T Consensus 45 A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEccCCC
Confidence 478999999999986322222 23457889999999999998 99999999999999998874
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.32 E-value=5.7e-12 Score=69.02 Aligned_cols=57 Identities=21% Similarity=0.549 Sum_probs=49.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|+.|+.|++||+.++.... .+.+|++.|..+.|+.++. +|++++.|.+|++||+..
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~--vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGN--VLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCC--EEEecCCCCeEEEEEchh
Confidence 36789999999998765333 6889999999999999999 999999999999999864
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.32 E-value=1.3e-11 Score=65.18 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=51.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|.+|++||+..+.... .|..|+.+|.+++|+|++. ++++|+.|+.|.+|+.++++
T Consensus 428 as~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~--ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGR--YLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCc--EEEecCCCCeeEeccccchh
Confidence 5678999999998765444 6888999999999999999 99999999999999998774
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.2e-12 Score=70.09 Aligned_cols=56 Identities=14% Similarity=0.385 Sum_probs=49.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|+.|.+++|||.++..... .+.+|...|.++.|+|.-+ .+++|+.||++++|.-.+
T Consensus 203 gaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~lp--iiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 203 GADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPELP--IIISGSEDGTVRIWNSKT 258 (794)
T ss_pred cCCCceEEEeecchHHHHH---HhhcccccceEEEecCCCc--EEEEecCCccEEEecCcc
Confidence 6788999999999865444 6899999999999999999 999999999999997655
No 35
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.32 E-value=1.1e-11 Score=64.69 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=48.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|+.+.|||+.+. ...+....++|.+.+.+++|+|-+.. .|++++.|++|.+||+|+-
T Consensus 246 v~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNL 305 (422)
T ss_pred ecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhc
Confidence 456889999999853 23333456789999999999998765 8999999999999999864
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.32 E-value=2.9e-11 Score=67.55 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=48.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|+.|++||+.++... ..+.+|...|.+++|+| ++. ++++++.|+.|++||++++
T Consensus 551 ~~~Dg~v~lWd~~~~~~~---~~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLV---TEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQG 608 (793)
T ss_pred EeCCCeEEEEECCCCeEE---EEecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCC
Confidence 567899999999875433 35788999999999997 566 8999999999999999865
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.31 E-value=1e-11 Score=64.20 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=52.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..+++||..++........+.+|.+.|.++.|+|.+.. .+++++.|+++++||+++..
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecCCeEEEEEeccCC
Confidence 678899999999876544445678899999999999998876 78999999999999998753
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=1.9e-11 Score=67.54 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=51.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|+.|+.|++|+...+.... .|..|++.|..++|+..+. .+++.+.||+|+.||+...
T Consensus 367 TG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~--~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGN--VLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCC--EEEEeecCCeEEeeeeccc
Confidence 47789999999998876555 7899999999999999999 9999999999999998654
No 39
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.29 E-value=8.6e-12 Score=68.30 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=51.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|-+|++||+.+.+... .+.+|++.|..++|+|++. .+++.+.|+++++++.+.++
T Consensus 696 asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AWSpdGr--~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAWSPDGR--RIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhccceeeeeehhhhhhhh---eeccCcCceeEEEECCCCc--ceeeeecCceEEEeCCCCCC
Confidence 5678899999998765444 6889999999999999999 89999999999999987764
No 40
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5.7e-11 Score=58.89 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=52.0
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC--CCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|++|++|+||...+......+..+.+|.++|..++|-. .+. +|++++.|+.+.+|...+|+
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEEEecCCCc
Confidence 478899999999876544455668999999999999954 466 99999999999999988774
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=3.3e-11 Score=66.20 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=50.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|+.|.+.++|+++.. .....+.+|+..+.++.|+|..+ .++|++.|.+|++|.+.+.
T Consensus 480 T~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq--~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQ--LLATCSGDKTVKIWSISTF 537 (775)
T ss_pred ecccccceeeecccCc---eEEEEeeCCccceEEEEeccccc--eeEeccCCceEEEEEeccc
Confidence 4789999999999843 33447999999999999999998 9999999999999998765
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=2.2e-11 Score=67.31 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=46.0
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|++|+++++..+. .+.+|.++|.+++|+|.+. .|++++.|.+|++||+-
T Consensus 459 ~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~--~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGS--LLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEEEeecCeeee---hhcCCCCcceeeEEccccC--eEEeccccceEEEEEee
Confidence 58999999987666 6899999999999999999 99999999999999974
No 43
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.26 E-value=3.5e-11 Score=62.86 Aligned_cols=59 Identities=17% Similarity=0.378 Sum_probs=50.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|+.|++|++||+.+-. .+...+.+|...|..+.|+|...+ .+++++.|+.+.+||+..
T Consensus 290 T~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccc
Confidence 36789999999998643 244578899999999999998877 899999999999999853
No 44
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.26 E-value=8.1e-11 Score=59.46 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=50.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++-|.+..+||++++.... .|.+|.+.|.++++.| +++ .+++|+.|...++||++.+.
T Consensus 162 ~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~~~n--tFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPSDGN--TFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cCCCceEEEEEcccceEEE---EecCCcccEEEEecCCCCCC--eEEecccccceeeeeccCcc
Confidence 5668888999999876444 7899999999999999 666 89999999999999999873
No 45
>PTZ00420 coronin; Provisional
Probab=99.26 E-value=9.7e-11 Score=63.78 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=46.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+.|++||+.++.... .+. +...|.+++|+|++. ++++++.|+.+++||+++++
T Consensus 144 gS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred EeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCc
Confidence 4679999999998765332 333 456799999999999 89999999999999998764
No 46
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.26 E-value=5e-11 Score=60.52 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=48.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..+-+|++.|+.++.... .+.+|++.|.++.|+|.... .|++++.|+.+++||++.
T Consensus 164 gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~Wsp~~e~-vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEWSPSSEW-VLATGSADGAIRLWDIRR 220 (397)
T ss_pred ecCCCcEEEEeccCCccee---eeccccCceEEEEeccCcee-EEEecCCCceEEEEEeec
Confidence 4456789999998876444 68999999999999998875 899999999999999974
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.26 E-value=4.4e-12 Score=66.88 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=51.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+.|+||++... ...++.+.+|..+|..++|++++. .+++++.|+++++||+++|+
T Consensus 233 ~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 233 GGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGT--SFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred cCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCC--eeeeeecceeeeeeccccce
Confidence 678999999998762 223457899999999999999999 89999999999999999985
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.24 E-value=6e-11 Score=65.24 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=51.5
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+++.|.+|+||.+++..... .+.+|+..|..+.|-..+. .+++++.||.+++|++++++
T Consensus 522 T~SgD~TvKIW~is~fSClk---T~eGH~~aVlra~F~~~~~--qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLK---TFEGHTSAVLRASFIRNGK--QLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eccCCceEEEEEeccceeee---eecCccceeEeeeeeeCCc--EEEeccCCCcEEEEeccchh
Confidence 36789999999998755444 7999999999999998888 89999999999999998763
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=4.8e-11 Score=65.73 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=47.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|.++++|++.....+. .| .|.+-|+|++|+|-... ++++|+.|+.+++|++...
T Consensus 386 SSMDKTVRLWh~~~~~CL~---~F-~HndfVTcVaFnPvDDr-yFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 386 SSMDKTVRLWHPGRKECLK---VF-SHNDFVTCVAFNPVDDR-YFISGSLDGKVRLWSISDK 442 (712)
T ss_pred ccccccEEeecCCCcceee---EE-ecCCeeEEEEecccCCC-cEeecccccceEEeecCcC
Confidence 5679999999998766555 34 59999999999996655 9999999999999998654
No 50
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=9.5e-11 Score=59.65 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=51.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.||.|.+|+... +.....+++|.+.|+.++.+|.++ +.++.+.|..+++||+-.|+
T Consensus 102 S~sdDG~i~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGS---WELLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eecCCCcEEEEEcCC---eEEeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCc
Confidence 367899999999864 455567899999999999999999 89999999999999998775
No 51
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=3.5e-11 Score=66.44 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=47.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+..+|.+++||+.... .....+.+|+++|.++.|+|... +|+||+.|+.+++|+...++
T Consensus 195 ~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ecCCceEEEeeccCch--hHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCC
Confidence 3457899999997532 22235789999999999999666 99999999999999987653
No 52
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=4.4e-11 Score=62.25 Aligned_cols=58 Identities=24% Similarity=0.435 Sum_probs=51.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|..|++|+-.+++.+. .|.+|-..|..++|+.+.. ++.+|+.|.++++|++++.+
T Consensus 385 aSFDkSVkLW~g~tGk~la---sfRGHv~~VYqvawsaDsR--LlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLA---SFRGHVAAVYQVAWSADSR--LLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eecccceeeeeCCCcchhh---hhhhccceeEEEEeccCcc--EEEEcCCCceEEEEEeeeee
Confidence 5789999999999887554 6899999999999999999 99999999999999998753
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.20 E-value=6.9e-11 Score=63.32 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=46.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccc--cEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG--GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..||.|.+|+..+.........-++|.. .|.+++|+++++ +|++-+.|.++++||+++-
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence 56799999999854322211223356765 899999999999 9999999999999999864
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.20 E-value=1.1e-11 Score=64.07 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=45.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.|++|.+|++||++.+..+. .+.+|..-|+++.|. .+ .+.+|+.||+|++||+.++
T Consensus 375 SGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~k--rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 375 SGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NK--RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cc--eeeeccccceEEEEecccc
Confidence 36788899999998776544 578899999999994 55 7889999999999998765
No 55
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.18 E-value=2.4e-10 Score=59.69 Aligned_cols=57 Identities=26% Similarity=0.414 Sum_probs=50.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|..|.+|++.++.... .+. |.+.|.+++|+.++. ++++.+.|..|++||.++++
T Consensus 150 ag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCc
Confidence 5678999999999887554 354 999999999999999 99999999999999999875
No 56
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.16 E-value=8.4e-11 Score=65.45 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=48.9
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
..|-.|.++|..+.+ .++.+.+|.+.++.++|+|+++ .+++++.|++|++||+-++.
T Consensus 553 ~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~Dgr--WlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGR--WLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred cCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCc--EEEEeecCCcEEEEeccCcc
Confidence 456788999987754 3347999999999999999999 99999999999999998763
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.15 E-value=4.1e-10 Score=60.42 Aligned_cols=60 Identities=32% Similarity=0.505 Sum_probs=49.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.|+.+.+||-.++........-.+|.+.|.+++|+|++. .+++++.|.++++||+.+.
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeecc
Confidence 46799999999887764442212348999999999999999 8999999999999999765
No 58
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.15 E-value=3.4e-10 Score=57.45 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=48.2
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.|+++++||+.++... .+..|.++|..+.|.+... + .|++++.|.++++||.+...
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~-cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQ-CLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcc-eeEecccccceeecccCCCC
Confidence 3678999999999887433 4678999999999976543 4 79999999999999998653
No 59
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=3.6e-10 Score=59.41 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=49.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|+.|.+|++||+.+++... .+..|...|.+++|+|..++ ++++|+.|+++.+.|.+.
T Consensus 261 SgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRD 318 (463)
T ss_pred ecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccC
Confidence 36789999999999876443 56678999999999998887 899999999999999983
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.6e-10 Score=63.83 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=50.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|++|+||+-++++... .+.+|...|-|.+|+|.+. .+++++.|-+|++||+..
T Consensus 111 ASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred ccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccc--eEEEecccceEEEEeecc
Confidence 6789999999998877655 6889999999999999888 899999999999999864
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=2.3e-10 Score=56.71 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=51.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|++|.++++|+...+.... .+.+|...|..++.+.++. .+++|+.|..+.+||+.+|+
T Consensus 34 tcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred EcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEEEcccCe
Confidence 36789999999988765444 7889999999999999999 89999999999999999985
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.13 E-value=7.4e-10 Score=56.17 Aligned_cols=60 Identities=25% Similarity=0.484 Sum_probs=50.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.|+.|.+|....... -...+++|.+.|..+.|.+++. .+++++.|.+++.||.++|+
T Consensus 64 SgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 64 SGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred ecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEecccce
Confidence 367899999999754321 1125779999999999999999 99999999999999999985
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=5.5e-10 Score=59.20 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=48.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+.|..+++||+.+... ...+.+|++.|++.+++|...- .++||+.||+|++||.+..
T Consensus 129 ~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred cCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccC
Confidence 67788899999987542 3468899999999999997664 6889999999999999864
No 64
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=5.2e-10 Score=61.20 Aligned_cols=57 Identities=12% Similarity=0.337 Sum_probs=48.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+..+-+++||..+.+.. +.+++|+..|+.+-.+.++. .++++++|++|++||+...
T Consensus 189 Ggtek~lr~wDprt~~ki---mkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKI---MKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred cCcccceEEeccccccce---eeeeccccceEEEEEcCCCC--eEeecCCCceEEeeecccc
Confidence 556678999999875433 36889999999999999999 8999999999999999754
No 65
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=7.2e-10 Score=55.24 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=47.3
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+-|+.++-||++++.. .+.+++|++.+.++.--.... .+++++.||++++||.++++
T Consensus 133 gGD~~~y~~dlE~G~i---~r~~rGHtDYvH~vv~R~~~~--qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRI---QREYRGHTDYVHSVVGRNANG--QILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cCCeEEEEEEecCCEE---EEEEcCCcceeeeeeecccCc--ceeecCCCccEEEEeccccc
Confidence 4578899999998753 247999999999998855556 68999999999999999875
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.10 E-value=6.7e-10 Score=55.78 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=49.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|....+|-..++..+- .+.+|++.|++++.+-+.. .+++++.|.++++||+++|+
T Consensus 28 caKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 28 CAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWDVETGK 85 (327)
T ss_pred ecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEEEcCCCc
Confidence 5567777788766655444 7899999999999998888 99999999999999999986
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.10 E-value=6.1e-10 Score=59.09 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=47.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+.+++||.+++.... .+.. .....++.|+|++.. .+++|+.|+.|+.||.++++
T Consensus 276 ~sfD~~lKlwDtETG~~~~---~f~~-~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLS---RFHL-DKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eecceeeeeeccccceEEE---EEec-CCCceeeecCCCCCc-EEEEecCCCcEEEEeccchH
Confidence 5779999999999987554 3432 345689999999954 88899999999999999874
No 68
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.08 E-value=3.3e-10 Score=59.30 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=50.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+++.|..|++||..++..+. .+.+|...|..+.|++.++ +|++++.|..++++|+++
T Consensus 239 sgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred EccCCceeEeecCCCcchhh---hhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhH
Confidence 36778899999999876555 5788999999999999997 999999999999999973
No 69
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.07 E-value=1.9e-09 Score=57.34 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=47.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|+.|++|.+.... ++..+.+|.+.|.++.|+|.+. +|++++.|+++++|....+
T Consensus 335 s~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred cCCCceEEEEEecCCC---cceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCC
Confidence 4567889998886432 3346888999999999999999 9999999999999986543
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.07 E-value=8.4e-10 Score=55.99 Aligned_cols=57 Identities=14% Similarity=0.353 Sum_probs=49.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|.-|+.|++||+....... .+.+|.++|..+..++++. ++.+-++|.++++||++.-
T Consensus 192 ggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ccccCceeeeccccCcceE---EeecccCceeeEEeccCCC--ccccccccceEEEEEeccc
Confidence 4567889999997655444 6899999999999999999 9999999999999999753
No 71
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.07 E-value=2.5e-10 Score=57.22 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=47.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
++++|+.|++|+-++...+. .++-|.+.|.+++|+|+.. ++++++.|..|.+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd~~--lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPDCE--LMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCCCc--hhhhccCCceEEeeec
Confidence 36789999999988754333 5778999999999999988 8999999999999986
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.6e-10 Score=65.16 Aligned_cols=56 Identities=25% Similarity=0.489 Sum_probs=47.9
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.+|.|++||..=+.... .|.+|.++|++++|+|..+ ++.+|+.|..|++|++++.+
T Consensus 29 HsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 29 HSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEecccce
Confidence 46889999986443333 6889999999999999999 99999999999999998754
No 73
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.5e-09 Score=55.07 Aligned_cols=55 Identities=36% Similarity=0.450 Sum_probs=46.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|+.||.|+++|+.++... .+..|...++++.+.+... .+++++.|.+|++||.++
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccc
Confidence 567888899998876533 3677999999999998888 899999999999999984
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.06 E-value=1.9e-09 Score=58.61 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=47.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|.+|++|+++++.... .+.+|.++|+++..+ +. .+++++.|++|.+|++.+++
T Consensus 307 gs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence 5689999999998766554 566799999999996 66 89999999999999998764
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.7e-09 Score=54.06 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=47.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|+++++||+...... +.+..|...+.++.|+..... .+++++.|+.|+.||+++-
T Consensus 166 ~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred ccCCceEEEEEecCCCce---eEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhc
Confidence 467899999998753222 247889999999999876665 8999999999999999864
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.06 E-value=1.3e-09 Score=56.36 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~ 65 (65)
+|+.||.+-+|.+.++.... .+.+|+.++.+=.|.|+++ .++++..|++|++|++.++.+
T Consensus 165 AG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdGK--r~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDGK--RILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred eecCCCcEEEEECCCcceee---EecCCCCCcccccccCCCc--eEEEEecCceEEEEecCCCce
Confidence 47889999999998753232 5789999999999999999 899999999999999998853
No 77
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.7e-09 Score=59.32 Aligned_cols=57 Identities=30% Similarity=0.494 Sum_probs=50.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|+.|..|++|+..+... +..|.+|.+-|++++.+|..+ ++++++.|.+|++||-+.
T Consensus 72 ~GsDD~~IrVfnynt~ek---V~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEK---VKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred EecCCceEEEEeccccee---eEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC
Confidence 477899999999988543 447999999999999999999 999999999999999764
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.05 E-value=3.2e-09 Score=55.01 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=50.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..-.+|++.++.... .+.+|...|.++.|+.++. +|+++..+|.+.+|+..++.
T Consensus 82 GGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred cCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEEcccCc
Confidence 5667778899998876443 6889999999999999999 99999999999999998763
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.04 E-value=1e-09 Score=57.05 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=46.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++|++|+.||+.++.... .+. .....++++++|... ++++++.|..+++||++++
T Consensus 277 ~SwDHTIk~WDletg~~~~---~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKS---TLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ecccceEEEEEeeccccee---eee-cCcceeEeecccccc--eeeecCCCCceeecCCCCC
Confidence 6889999999998865443 232 234678999999888 9999999999999999986
No 80
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.03 E-value=8.1e-10 Score=57.81 Aligned_cols=63 Identities=14% Similarity=0.311 Sum_probs=52.2
Q ss_pred CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.|.+|.||++..+. ...++..+.+|...|--++|+|.-.+ .|++++.|++|.+|++.+|+
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn~v~iWnv~tge 165 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDNTVSIWNVGTGE 165 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCceEEEEeccCCc
Confidence 36788999999986432 23345578899999999999998776 89999999999999999885
No 81
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=7.4e-10 Score=61.48 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=49.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++.+|.|-+||+.....-.....|..|...+.+++|++..+. +|++|+.|++|++||++..
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecc
Confidence 3577899999999752111112257789999999999998876 8999999999999999864
No 82
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.01 E-value=1.5e-09 Score=55.16 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=48.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
|+.|+.|++||....+ .++..+.+|...|.++.|+|...+ ++++++.|..+.+|+-.
T Consensus 233 ~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 233 CGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCAS 289 (370)
T ss_pred cCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecc
Confidence 6789999999987643 345578899999999999998877 89999999999999653
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.00 E-value=2.7e-09 Score=59.38 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=49.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|+.||.|++|+..+..... .+.+|...|+.+.|...|. .+++|+.|+.|.+||+-.
T Consensus 82 VGYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 82 VGYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVG 138 (888)
T ss_pred EEecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEecc
Confidence 57889999999998653333 6889999999999999999 999999999999999853
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.3e-09 Score=53.15 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=45.3
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|.+|+.-++.+.+.. +.|+||...|..++.+|.+. .+++++.|.+|++||++..
T Consensus 79 d~tIryLsl~dNkyl---RYF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYL---RYFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred CCceEEEEeecCceE---EEcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCC
Confidence 567777777665433 37999999999999999998 8999999999999999854
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.3e-10 Score=58.38 Aligned_cols=59 Identities=22% Similarity=0.430 Sum_probs=50.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEee-cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.||.|++|.+.++..+. .|. +|+..|.+++|+.++. .+++++.|.++++..+++|+
T Consensus 280 sGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred ccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence 47889999999999876444 454 8999999999999999 89999999999999888774
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=56.56 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=50.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|.++++.-+.+++.+. .+++|.+.|+...|.+++. .+++++.|+++++|+.++.+
T Consensus 324 ~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~--~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 324 ASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGH--HIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred ccccceEEEeccccchhHH---HhcCccccccceEEcCCCC--eEEEecCCccEEEecCcchh
Confidence 5678888888888776554 6899999999999999999 99999999999999987753
No 87
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1e-08 Score=51.62 Aligned_cols=58 Identities=21% Similarity=0.441 Sum_probs=49.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
++.|.+|++|.-..+.....+..+.+|...|.+++|++.+. .+++++.|+++++|...
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeec
Confidence 67899999998774444666678899999999999999998 89999999999999743
No 88
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.97 E-value=1.5e-09 Score=55.70 Aligned_cols=58 Identities=17% Similarity=0.433 Sum_probs=47.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.-|.|+|.|..++.... .+.+|...|+.+.++|..++ ++++++.|..|++|++++.
T Consensus 111 ~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred ecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCC
Confidence 3445778888887654333 57899999999999999887 9999999999999999875
No 89
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.7e-08 Score=50.89 Aligned_cols=59 Identities=24% Similarity=0.468 Sum_probs=50.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|.++.||.-..+. +..+..+.+|...|.+++|++++. +|++|+.|..+=+|....+
T Consensus 79 aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDED 137 (312)
T ss_pred eeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCC
Confidence 5778889999876543 555668999999999999999999 9999999999999987644
No 90
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=6.3e-09 Score=53.99 Aligned_cols=57 Identities=18% Similarity=0.457 Sum_probs=51.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|.+|++|++.++.... .+.+|...++.++.+.++. ++++++.|.++++|.+.++
T Consensus 211 ~srD~tik~We~~tg~cv~---t~~~h~ewvr~v~v~~DGt--i~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVK---TFPGHSEWVRMVRVNQDGT--IIASCSNDQTLRVWVVATK 267 (406)
T ss_pred cccccceeEEecccceeEE---eccCchHhEEEEEecCCee--EEEecCCCceEEEEEeccc
Confidence 6789999999999876554 7899999999999999999 9999999999999988765
No 91
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=1.1e-09 Score=59.03 Aligned_cols=57 Identities=19% Similarity=0.433 Sum_probs=47.1
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+.||.++||++.+..... ..+..-+...|++|+||++ ++++++.|-.|.+|.+..++
T Consensus 309 SqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 309 SQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred ecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccce
Confidence 678999999987754333 3556667889999999999 99999999999999987653
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.1e-09 Score=55.73 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=48.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe--cCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC--GDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~~i~~w~~~~~~ 64 (65)
.|++|+.+.|||.... .+...+..|...|.+++|+|-... +|++| +.|+.|++||..+|.
T Consensus 318 SGgnDN~~~Iwd~~~~---~p~~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSP---EPKFTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred cCCCccceEeccCCCc---cccEEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCc
Confidence 3788999999998542 233367889999999999997665 78885 478999999998774
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=4.1e-09 Score=54.36 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=46.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|.+.++||+.. ....+..|++|+..|.++.|..+.. +.+++.|.++++||+++
T Consensus 332 sSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~---vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 332 SSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDR---VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred eccCceeEeccchh--hcceeeeecccccceeEEEEecCCc---eeecCCCceEEEeeecc
Confidence 46688899999974 3444557999999999999987765 78999999999999976
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=8.5e-09 Score=54.46 Aligned_cols=61 Identities=21% Similarity=0.390 Sum_probs=51.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|.+.-+|++...........+.+|..+|..+.|+|+.. ++++|+.+-.+.+||+.+|.
T Consensus 242 aSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 242 ASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred ccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeeccCCcch
Confidence 56778888898765544555667889999999999999999 99999999999999999874
No 95
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=1.5e-09 Score=57.69 Aligned_cols=57 Identities=30% Similarity=0.483 Sum_probs=48.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..+|+|.+|+......+. .+-.|.++|.++++.+.+. +.+|.+.|..+++||++.-
T Consensus 269 GhsnGtVSlWSP~skePLv---KiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLV---KILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred cCCCceEEecCCCCcchHH---HHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccc
Confidence 5678999999987643232 4667999999999999999 9999999999999999863
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.92 E-value=7.5e-10 Score=55.34 Aligned_cols=59 Identities=25% Similarity=0.628 Sum_probs=47.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+++..+++||++.... +...+.+|.+.|+.+-|....+ .+++...|++|++||.+++.
T Consensus 118 gg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~--~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDK--CILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred cchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCc--eEEeeccCCceEEEEeccCc
Confidence 55667788899876432 2236789999999999998888 78888999999999999874
No 97
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.91 E-value=1.7e-08 Score=56.82 Aligned_cols=59 Identities=10% Similarity=0.136 Sum_probs=47.7
Q ss_pred ccccCeEEEEECCCCc---eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGD---EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|+.|++||+.... ....+..+.+|...+..++|++++. ++++++.|+.+.+|+...
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~--~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG--YIATGSETNEVFVYHKAF 739 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC--EEEEEeCCCEEEEEECCC
Confidence 5679999999986421 1223446788998899999999998 999999999999999753
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.91 E-value=1.7e-08 Score=55.07 Aligned_cols=59 Identities=25% Similarity=0.480 Sum_probs=49.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.+.+|++|+..++.... ..+.+|.+.|.++++...+. ++++|+.|.++++||..+|.
T Consensus 224 ~s~~~tl~~~~~~~~~~i~--~~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLIL--TRLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred cCCCceeEEeecccceEEE--eeccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCCCc
Confidence 5678889999988764332 24889999999999987677 89999999999999998874
No 99
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=6.9e-09 Score=56.06 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=48.8
Q ss_pred ccccCeEEEEECCC-----CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNG-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
++.|+.+++|.++. .....++..|.+|.++|.|+++.+.+. .+++++.|++|+.|++.
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGTIRCWNLP 374 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCceeeeeccC
Confidence 56789999999842 223556678999999999999998888 99999999999999664
No 100
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.89 E-value=3.2e-08 Score=48.35 Aligned_cols=57 Identities=32% Similarity=0.576 Sum_probs=45.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.++.+++|++..+.... .+..|...+.++.|++++. ++++++.++.+.+|+++++
T Consensus 69 ~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 69 GSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCc
Confidence 4568999999998643222 4667888899999999877 8888888999999999754
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.89 E-value=5.2e-09 Score=56.43 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=43.6
Q ss_pred CccccCeEEEEECCCCceEeeeEE---eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+++.|+++++|++...+.-..+.. -.+.+-++..++|+++++ .+++++.||.|.+|+..
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~--~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK--LIAAGCLDGSIQIWDKG 347 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc--hhhhcccCCceeeeecC
Confidence 367899999999976432111111 123345678899999999 89999999999999974
No 102
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.88 E-value=4.3e-08 Score=47.88 Aligned_cols=57 Identities=26% Similarity=0.542 Sum_probs=46.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.++.+.+|++.+.... ..+..|...+..+.|++++. .+++++.++.+.+|++.++
T Consensus 27 ~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 27 GSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWDLETG 83 (289)
T ss_pred eecCcEEEEEEeeCCCcE---EEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEEcCcc
Confidence 455899999999765422 24667888888999999998 8999999999999999764
No 103
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=8e-09 Score=53.26 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=45.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+.+++.|++||..++..+. .++++...+..+.|..+ ... .+.+|+.||+|++||++..
T Consensus 46 ~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred EecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecc
Confidence 4567899999998865444 68888888888888653 332 6889999999999999864
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.7e-08 Score=51.76 Aligned_cols=58 Identities=19% Similarity=0.398 Sum_probs=46.5
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|++|.+|+|||+.+..... .+-.|.+.|+++.|.++-. . .|++|+.||.|.+|+...
T Consensus 58 SGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 58 SGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCC
Confidence 37889999999998754333 4667899999999987542 2 689999999999998764
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=1.3e-09 Score=60.31 Aligned_cols=56 Identities=14% Similarity=0.405 Sum_probs=48.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+|+.+|+|++||++..+... .+.+|...+..++|+|.+. +.++++.|..+++||.+
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIR 142 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--Eeccccccccceehhhh
Confidence 46788999999998755333 6889999999999999998 89999999999999987
No 106
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.82 E-value=5e-08 Score=52.80 Aligned_cols=61 Identities=16% Similarity=0.394 Sum_probs=50.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.|+.+++|.+.... +.....+..|++.+..++|+|++. +|+++...+.+.+||+.+.+
T Consensus 460 VGG~Dgkvhvysl~g~~-l~ee~~~~~h~a~iT~vaySpd~~--yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDE-LKEEAKLLEHRAAITDVAYSPDGA--YLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred EecccceEEEEEecCCc-ccceeeeecccCCceEEEECCCCc--EEEEeccCCcEEEEEcccCc
Confidence 47889999999997654 233335667999999999999999 99999999999999997653
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.81 E-value=1.2e-08 Score=56.10 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=48.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++-|.+++.||+...... -.+.+.+|+..+..++|+|.++. .+++|+.|+.+.+||.+.
T Consensus 118 asGDsT~r~Wdvk~s~l~-G~~~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLV-GGRLNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccCCceeeeeeeccceee-cceeecccccccchhhhccCCCc-ceeeccCCCcEEEEEEec
Confidence 356889999999875422 22357899999999999998886 899999999999999875
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=7.5e-08 Score=53.15 Aligned_cols=61 Identities=10% Similarity=0.242 Sum_probs=47.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.||.+..++...+. ....+.+...++++.+++|+|++. .+++|+.|+.|++||...+.
T Consensus 127 IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 127 IGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred eecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCcc--EEEecccCceEEEEEcCCCc
Confidence 45678877777776553 333345555678999999999998 89999999999999998764
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.5e-08 Score=52.79 Aligned_cols=56 Identities=20% Similarity=0.359 Sum_probs=46.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..+..|.||+..+.. ++..+.+|..+|..++++|++. .+++++.|.++++|++-.
T Consensus 407 G~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~--~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGE--TIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCCCC--EEEEecccCcEEeccccC
Confidence 4456788999987743 3346889999999999999999 999999999999998743
No 110
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.81 E-value=6.8e-08 Score=49.34 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=48.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++-|-+-.|||++++.......++-+|...|..++|...+.. .+++++.||.++++|++.-
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSL 229 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEeccc
Confidence 455677789999886432233367789999999999987776 8999999999999999864
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=1.2e-08 Score=56.11 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEe-cCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++|-+|++|+...+. ......+..|.+.|.|+++ -+... ++++|+.|+.|.+||+.++
T Consensus 91 ~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTG 150 (735)
T ss_pred ecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCc
Confidence 6789999999987654 1223357789999999999 44555 8999999999999999876
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.80 E-value=5.2e-08 Score=53.98 Aligned_cols=55 Identities=16% Similarity=0.491 Sum_probs=45.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|++||.|+.|++.. ..+. ...+|++-+.+++..+.+. .+++++.|+++++|+..
T Consensus 195 ScsNDg~Ir~w~~~g-e~l~---~~~ghtn~vYsis~~~~~~--~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 195 SCSNDGSIRLWDLDG-EVLL---EMHGHTNFVYSISMALSDG--LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eecCCceEEEEeccC-ceee---eeeccceEEEEEEecCCCC--eEEEecCCceEEEeecC
Confidence 368999999999943 3333 5789999999999777777 89999999999999764
No 113
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=8.7e-09 Score=54.83 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=48.0
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|...|.|++||..+... ++.+.+|+.++....|+|...+ .+.+|+.|+.+++||+.++
T Consensus 85 aGD~sG~V~vfD~k~r~i---LR~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVI---LRQLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred ccCCcCcEEEeccccHHH---HHHHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCc
Confidence 366778999999655322 2368899999999999998886 8888999999999999765
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=1e-08 Score=52.94 Aligned_cols=53 Identities=26% Similarity=0.541 Sum_probs=47.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
++.|++-+||.++++..+. .+.+|.+.|++++|++.+. ++++++.|.+..+|.
T Consensus 166 ASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 166 ASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWK 218 (481)
T ss_pred cccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHHH
Confidence 5678999999999987665 6889999999999999998 999999999999996
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=5.3e-09 Score=55.22 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=45.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEe------------------ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|..+..|.|||+.-.....+...+ .+|++.|..++|+..-.. .|++++.|.+|.+||+.+
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKLWDVDT 275 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEEEEcCC
Confidence 3566788999997532211111111 257777888888876655 899999999999999998
Q ss_pred CCC
Q 039404 63 GVK 65 (65)
Q Consensus 63 ~~~ 65 (65)
|++
T Consensus 276 g~p 278 (463)
T KOG0270|consen 276 GKP 278 (463)
T ss_pred CCc
Confidence 864
No 116
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.79 E-value=1.2e-08 Score=51.25 Aligned_cols=61 Identities=21% Similarity=0.432 Sum_probs=48.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|+++.+|.+.... ........+|.+.|-.++|+|..+. .+++++.|..|++||.+.++
T Consensus 38 gs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEEeccCc
Confidence 5678899999987542 2222246788889999999998776 89999999999999998875
No 117
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.8e-08 Score=52.78 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=46.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++.||.+++|+..... .......|...|..++|+|+++ ++++.+.| ..++|+..+|
T Consensus 161 tgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eccccceEEEEecCcch---hhhhhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccC
Confidence 35679999999965432 2223567888999999999999 99999988 9999999887
No 118
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.77 E-value=1.6e-07 Score=48.99 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=45.6
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC-cEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK-TIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~-~i~~w~~~~~~ 64 (65)
.|.|.+||..+ ..++..+..|.+.+-+++|+++|. ++++++..| .|+++.+.+|+
T Consensus 152 ~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 152 SGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred CceEEEEEccc---ceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCcc
Confidence 47899999875 344457889999999999999999 999999887 56788887764
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=52.06 Aligned_cols=56 Identities=11% Similarity=0.315 Sum_probs=43.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
+|+.||.|+||+..+++. ..+....+....|.+++|+|.+. .+++++.+..+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~sG~--~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNPSGS--GLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcCCCc--hhhcccCCcceEecC
Confidence 478999999999988753 32222222233699999999999 899999999999993
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.76 E-value=3.3e-08 Score=51.59 Aligned_cols=54 Identities=30% Similarity=0.456 Sum_probs=44.7
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|+.||.|++||+....... .+++|.+.|.++++.. . -+++++.|.+++.|...
T Consensus 84 SGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQWKID 137 (433)
T ss_pred ccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeeeecc
Confidence 47889999999998754333 6899999999999976 3 68899999999999753
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=9.3e-08 Score=54.24 Aligned_cols=59 Identities=14% Similarity=0.369 Sum_probs=48.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.|-.|++-+..... ....+++|.++|.+++|+|.+. +|++...||.+++|++.++.
T Consensus 113 agsdD~~vK~~~~~D~s---~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 113 AGSDDTAVKLLNLDDSS---QEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eecCceeEEEEeccccc---hheeecccCCceeeeeEcCCCC--EEEEEecCceEEEEEcccch
Confidence 36677788887775532 2235889999999999999999 99999999999999998763
No 122
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.75 E-value=2.7e-08 Score=50.76 Aligned_cols=57 Identities=26% Similarity=0.504 Sum_probs=44.4
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|+++..||+.+...... .-.+|...++.+.|+|..+- +|++|+.|+.+++||.+.-
T Consensus 191 ~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCC
Confidence 577888999987543221 22467778999999998775 7899999999999999753
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2.1e-07 Score=47.86 Aligned_cols=58 Identities=24% Similarity=0.497 Sum_probs=45.4
Q ss_pred CccccCeEEEEECCCC-ceEeeeEEeecccccEeEEEecCC--CCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGG-DEVRQHLEIDAHVGGVNDIAFSHP--NKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~~i~~w~~ 60 (65)
+|+.|+.++|||.... .........+.|.+.|..+.|-+. |+ .+++|+.|+++.+|.-
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVSIWEE 90 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCceeeeee
Confidence 4789999999996432 234444567889999999999543 45 8999999999999954
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.8e-08 Score=57.78 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=48.6
Q ss_pred ccccCeEEEEECCC---CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..||.|-+||... +.....+..+..|.+.|+.++|++...+ ++++|+.+|.|.+||+..-
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKP 149 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCc
Confidence 45689999999754 2233334467789999999999998776 8999999999999999753
No 125
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.73 E-value=6.5e-08 Score=55.21 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=47.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
++.|++|.+|+..+-. ....+.+|.+.|.++.|.|.++ ++++-+.|+++++|+..
T Consensus 147 ~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPIGK--YFASQSDDRTLKVWRTS 201 (942)
T ss_pred ecccceEEEEccccce---eeeeeecccccccceEECCccC--eeeeecCCceEEEEEcc
Confidence 5678999999987643 3347899999999999999999 99999999999999854
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.73 E-value=4.4e-08 Score=50.49 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=47.2
Q ss_pred CccccCeEEEEECCCC---------------ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGG---------------DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|+.|..|+|.|.+.. .....++.+..|.+.|..+.|+|... .|++++.|++++++|+..
T Consensus 129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~--ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET--ILISGSRDNTVKLFDFSK 203 (430)
T ss_pred ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--eEEeccCCCeEEEEeccc
Confidence 3677889999997611 01112456677899999999999999 999999999999999853
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.73 E-value=6.3e-08 Score=49.96 Aligned_cols=58 Identities=21% Similarity=0.412 Sum_probs=46.3
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.-..+++||+.+......-.+-..|++.|+++.+++.+. +.++++.||.|++||-.++
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEeccCCcEEeeccccH
Confidence 345688999987654443334567899999999999999 9999999999999986543
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4e-08 Score=54.72 Aligned_cols=58 Identities=22% Similarity=0.408 Sum_probs=48.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..+++||+....... .+.+|...+..+.|+|++. ++++++.|..+++||...|+
T Consensus 130 gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred ccccccceehhhhccCcee---eecCCcceeEEEeecCCCc--eeeccCCcceeeeecccccc
Confidence 5678889999997533233 5778999999999999999 99999999999999997664
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=3.6e-08 Score=52.44 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=46.4
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
-.+.|++|.+.++..+. .+.+|-..|+++.|+-++. ++++++.|+.|.+|.+.
T Consensus 101 i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEE
Confidence 46789999999987555 4678888999999999999 99999999999999764
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.69 E-value=2.9e-08 Score=50.81 Aligned_cols=62 Identities=24% Similarity=0.530 Sum_probs=47.0
Q ss_pred CccccCeEEEEECCCCc-eEe----------e-eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGD-EVR----------Q-HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~-~~~----------~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.|+.+++||+.... .+. + ...-.+|.+.+++++|..++. ++++++.|..+++|+..+|+
T Consensus 206 tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 206 TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeecccCc
Confidence 37889999999986431 111 0 011235778899999999999 89999999999999998875
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.68 E-value=7.9e-08 Score=51.24 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=45.1
Q ss_pred CccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+++.|++.+|||+..-. ...+......|+..|.+..|+|.+. .|++.+.|..|++||..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecc
Confidence 36889999999986421 1112222346888999999999998 78888999999999974
No 132
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.68 E-value=2.8e-07 Score=32.27 Aligned_cols=34 Identities=44% Similarity=0.838 Sum_probs=29.9
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
.+..|...+.+++|++.+. .+++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGK--YLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCC--EEEEecCCCeEEEcC
Confidence 4567888899999999887 899999999999985
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.67 E-value=2.3e-08 Score=55.50 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=49.7
Q ss_pred CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++..|+.|++|.+..+. ...+...+..|...|.++.|+|--.. .|++++.|.+|.+||+.++
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDLANA 710 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeehhhh
Confidence 45678999999986533 12234467889999999999997665 8999999999999999875
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=6e-08 Score=50.12 Aligned_cols=37 Identities=32% Similarity=0.627 Sum_probs=34.3
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+++|.+.|.+++|+.+++ .+++++.|+.|++|+++.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK--~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK--KLATISGDRSIRLWDVRD 117 (420)
T ss_pred hhhccCCceeeeEEcCCCc--eeEEEeCCceEEEEecch
Confidence 4689999999999999999 999999999999999864
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.7e-07 Score=49.28 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=48.5
Q ss_pred CccccCeEEEEECCC------CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|++||.|.+|++.. .....+...+..|+-+|..+...+.+....+++++.|.++++||+..|.
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 378999999998631 1123455678899999999888765322289999999999999998764
No 136
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.65 E-value=7.4e-08 Score=48.54 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=49.5
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|+.|..+-+||++.-. -++.+..+.-+|+.++|+.+++ +|++++.|..|-+=++.+|.
T Consensus 206 ~GsADAlvSLWD~~ELi---C~R~isRldwpVRTlSFS~dg~--~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELI---CERCISRLDWPVRTLSFSHDGR--MLASASEDHFIDIAEVETGD 264 (313)
T ss_pred eccccceeeccChhHhh---hheeeccccCceEEEEeccCcc--eeeccCccceEEeEecccCC
Confidence 47888999999987532 3346777888999999999999 99999999999988888775
No 137
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=48.92 Aligned_cols=57 Identities=11% Similarity=0.259 Sum_probs=44.5
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+..+.+||....... .......|.+.|++++|+|..++ .|++|+.||.+.++|++..
T Consensus 142 ~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 556889998754321 11135679999999999999887 9999999999999998753
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.59 E-value=4.6e-07 Score=48.00 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=42.6
Q ss_pred ccccCeEEEEECCCCceEeeeE--EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++-|..+.+.|+.+.....+.. .++ .......+.|+|++. ++++|+.|+.+++|++.+++
T Consensus 359 ssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrvvfSpd~~--YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRVVFSPDGS--YVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred ecCCCceeeeecccccEEEEeeccccc-cccccceeEECCCCc--eeeeccCCCcEEEEEccCce
Confidence 3456778888887644222111 111 123467899999999 99999999999999998874
No 139
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.59 E-value=1.9e-07 Score=47.29 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=48.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..||.|.+||+.++.... .....|...|+.++++++.. ++++++.|.+-++||+++-
T Consensus 165 Ghe~G~is~~da~~g~~~v--~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELV--DSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred ecCCCcEEEEEcccCceee--echhhhccccccccccCCcc--eEEecccCccceeeeccce
Confidence 5678999999998865332 23456888999999999999 9999999999999998763
No 140
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=2e-07 Score=52.11 Aligned_cols=38 Identities=39% Similarity=0.777 Sum_probs=34.2
Q ss_pred EEee-cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 23 LEID-AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 23 ~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+.+. +|.+.|+++.|+++|+ ++++++.|+.|++|.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK--yLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK--YLASAGEDGVIRVWKVIE 298 (712)
T ss_pred eccccccCCcEEEEEeCCCCc--eeeecCCCceEEEEEEec
Confidence 3455 8999999999999999 999999999999998865
No 141
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.59 E-value=4e-07 Score=51.24 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=46.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+-.|.++++|-+.+-+ ....+.||.-+|.+++.+|+++ .++||+.|..|++|-+.-|
T Consensus 526 sLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~DSk--livTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSK--LIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EeccCeEEEEEeccee---eeeeecccccceeEEeccCCcC--eEEeccCCCceEEeccccc
Confidence 3457888898887633 2235789999999999999999 9999999999999977544
No 142
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=1.2e-06 Score=45.14 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=43.4
Q ss_pred ccccCe-EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHI-VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++..|+ |+|||..++......+.- .....+.+++|+|+.. +++.++..+++.++.++.
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFSp~~s--~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFSPNSS--WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeCCCcc--EEEEEcCCCeEEEEEeec
Confidence 344554 889999987655522221 1235689999999999 999999999999998865
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.5e-07 Score=48.71 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=42.1
Q ss_pred CeEEEEECC---CCc--eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 6 HIVQIYPCN---GGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 6 ~~i~i~~~~---~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..+++|..- .+. ....+..+++|.+.|..++|+++.. .+++.+.||++++||..
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeecc
Confidence 457888752 121 2233457899999999999999998 89999999999999864
No 144
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.8e-07 Score=46.84 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=48.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|+.|.||.-+++ ...+......|...|++++|-|.+..+.|++++.||.|.+.++++
T Consensus 76 csYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred eecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 678999999998776 455455667889999999998865543788999999999998764
No 145
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.6e-06 Score=44.44 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=38.3
Q ss_pred cCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.+.+++.|.-.+.... .+.++.. .-....|.|+++ ++++++.|++|.+|++++|.
T Consensus 208 ~s~~~~lDAf~G~~~~---tfs~~~~~~~~~~~a~ftPds~--Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKS---TFSGYPNAGNLPLSATFTPDSK--FVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CCcEEEEEccCCcEee---eEeeccCCCCcceeEEECCCCc--EEEEecCCCcEEEEEcCCCc
Confidence 3445666665554333 3333321 225678999999 99999999999999998875
No 146
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.53 E-value=2.6e-07 Score=51.36 Aligned_cols=53 Identities=15% Similarity=0.432 Sum_probs=41.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+|+.|.+|++|.-.+ .. +.+.+|++.|+++++-++.. +++|+.||.|++|++.
T Consensus 156 TgsaDKtIklWk~~~--~l---~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT--LL---KTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDLD 208 (745)
T ss_pred eccCcceeeeccCCc--hh---hhhccchhheeeeEEecCCC---eEeecCCceEEEEecc
Confidence 367788888887532 22 26889999999999987654 7899999999999984
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.53 E-value=9.8e-08 Score=49.89 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=47.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|..+..||+..- ..+....++|.+.|..++|+|.|. -+++|+.|.+|+++.++.+
T Consensus 247 a~ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~--EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 247 ANEDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQ--EFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccccceehhhhhh--cccchhhcccceeEEEeccCCCcc--hhccccccceEEEeecCCC
Confidence 567778888887642 233445778999999999999999 7999999999999988765
No 148
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.53 E-value=3.4e-07 Score=48.86 Aligned_cols=56 Identities=23% Similarity=0.456 Sum_probs=46.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..|..|.||+..+... +..+++|.+.|.+++|-.... -+++++.|+.+++|++..
T Consensus 220 gg~d~~v~Iw~~~t~eh---v~~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH---VKVFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cCCCceEEEecCcccch---hhcccccccceeeeeeecCcc--ceeeeecCCceEEEehhH
Confidence 56678899999987543 336899999999999976666 789999999999998753
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.52 E-value=4.9e-07 Score=50.76 Aligned_cols=52 Identities=17% Similarity=0.392 Sum_probs=45.4
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+..+.+||.+.+.... ++++|.+.|.+++|+.++. .+++|+.|..+.+|+..
T Consensus 32 g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK 83 (1081)
T ss_pred CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc
Confidence 4568899998776555 7999999999999999999 99999999999999763
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.51 E-value=1e-06 Score=46.57 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=46.0
Q ss_pred ccccCeEEEEECCCCc------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
|+.|..|++|-+.... ...-...+..|...|+++.|+|++. ++++|+.++.+.+|...
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFLWKQG 95 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEEEEec
Confidence 5678899999875322 2222345678899999999999999 99999999999999654
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.50 E-value=5.9e-07 Score=46.08 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=43.8
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
...|.|.|+... -.++..+.+|++.|++++|.|.... ++.+++.|....+||+.+
T Consensus 265 S~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 265 SNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CceEEEEEecCC--CcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEeccc
Confidence 345677777642 2234468899999999999998776 999999999999999864
No 152
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.50 E-value=1.1e-06 Score=50.45 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=49.3
Q ss_pred CccccCeEEEEECCC----------C-----ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~----------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|+.|+.|.||.... + ..+..+..+.+|...|..+.|+|++. ++++++.|++|.+|+.++.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 467788899998652 0 12234556889999999999999999 9999999999999998765
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.49 E-value=8.5e-07 Score=46.89 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=48.7
Q ss_pred ccccCeEEEEECC--------C-----CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCN--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.++.+.+|-.. + ...+...+.+.+|...+..++|+|++. ++.+++.|..+++||+..|.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence 5667889999765 2 112333456778999999999999999 99999999999999998874
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.48 E-value=7e-07 Score=47.80 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=48.7
Q ss_pred CccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|+..|+|-+|++.. .+....+..+..|..+|.++.|+|.+.. .+++.+.||+|++-|++.+
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceeeeeeecch
Confidence 366778999999942 2223334467789999999999998765 7889999999999998764
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.48 E-value=3.1e-06 Score=42.37 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=41.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEE-EEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYV-ITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+.+.+||+.++.... .+..+. .+..++|+|++. .+ ++++.++.+.+||..+++
T Consensus 7 ~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 7 NEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGK--LLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred ecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCC--EEEEEECCCCeEEEEECCCCc
Confidence 4568899999997765333 444443 357799999988 55 566788999999988753
No 156
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.47 E-value=3.1e-06 Score=45.38 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=44.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++|+.....|++++.....+.. +...-.+.+.+|||++. .+.++..|+.+++||+.++
T Consensus 321 As~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 321 ASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCce--EEeccCCCceEEEEEcCCc
Confidence 46788888888887764442111 11223478999999999 9999999999999999875
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=7.3e-07 Score=45.69 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=44.5
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++++|+++++||........ .+ .|..++.+++|.++ . .+++++.|+.|+.+|+.+++
T Consensus 30 vssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~-~--~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 30 VSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADE-S--TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred EEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCC-c--eEEEeccCceEEEEEecCCc
Confidence 46799999999987642111 23 47889999999864 4 68899999999999998764
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=9.2e-07 Score=45.57 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=43.3
Q ss_pred ccccCeEEEEECCCC-----------------ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 2 AYSRHIVQIYPCNGG-----------------DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+..|| |+||.+... .....+..+..|++.|..+.|+-.+. .|.+.+.||.+++|.-
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt--iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT--ILSSTGDDGCVRLWKA 317 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee--EEeecCCCceeeehhh
Confidence 45677 889987521 02233445778999999999999998 8999999999999953
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.45 E-value=1.8e-06 Score=48.91 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=48.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+.+|..|+||++++++.......-.+|.+....+...|.+. ++++.+.|.++.++|+.+|+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEEeecCCceEEEEeccch
Confidence 56789999999998765442222234556677899999998 99999999999999998875
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.3e-07 Score=53.54 Aligned_cols=56 Identities=14% Similarity=0.412 Sum_probs=45.8
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
..|.+||+... ..+.+.+.+|...|.+++|++.+.. ++++++.|+.+.+|+..+|+
T Consensus 232 PviqlWDlR~a--ssP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 232 PVIQLWDLRFA--SSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeEeeccccc--CCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCce
Confidence 35889998653 2344467899999999999998754 89999999999999999875
No 161
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=3.4e-06 Score=42.26 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=45.8
Q ss_pred CccccCeEEEEECCCCceEeeeE-Eeecc---cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHL-EIDAH---VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|++|.+|+.||+.-......+. .+++. .+.|..++..|.+. +++++..|....++|++.++
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence 37889999999987543222111 12221 25688899999999 99999999999999998775
No 162
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.41 E-value=2.8e-06 Score=45.57 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=44.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|..|.++++|.+.....+ .+.++.+.+-|++|-.+ . ++++|+.+|.|.+|++-..+
T Consensus 303 VGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In~-~--HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFIND-E--HFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred eccccceeEEEecccccee----eeeCCCCCeeeEEEecc-c--ceeeccCCceEEEeeecccC
Confidence 4668999999999543222 47788888999999644 3 79999999999999986543
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.1e-06 Score=48.54 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=36.2
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.+.+|++.|++++..|.+. .|++|+.||++++|.+.+|+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgR 433 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGR 433 (733)
T ss_pred eEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecce
Confidence 4689999999999999998 99999999999999998875
No 164
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.40 E-value=7.8e-06 Score=40.93 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=39.0
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~ 64 (65)
++.+.+||..+..... .+ .+...+.+++|+|++. .++++ +.++.|.+||.++++
T Consensus 228 ~~~i~v~d~~~~~~~~---~~-~~~~~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 228 ANRVAVVDAKTYEVLD---YL-LVGQRVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCeEEEEECCCCcEEE---EE-EeCCCcceEEECCCCC--EEEEEcCCCCeEEEEECCCCc
Confidence 4568899987654322 22 2334678999999999 77765 568999999998764
No 165
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=4.7e-06 Score=41.77 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=44.1
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|..-.+||+..+.. ++.+..|...|+++.|+|.-. ++++|+.|..|++-|+..
T Consensus 251 ~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCce--EEEEecccceEEEeeccc
Confidence 455666899876543 346888999999999999888 999999999999988753
No 166
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.2e-06 Score=46.13 Aligned_cols=57 Identities=14% Similarity=0.343 Sum_probs=44.9
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
...+.+..||...+.... ..+++-.+.++.+..+|.++ ++++++.|++++++|..+.
T Consensus 266 n~~g~l~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cccchhheecccCceeec--cccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccc
Confidence 344567778887654222 23677788999999999999 9999999999999999873
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.8e-06 Score=47.21 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=46.3
Q ss_pred ccccCeEEEEECCCCc-------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+-||.|+.|.+.... .......+.||++.++.+.+++... .|++|+.|+++++|.....
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCc
Confidence 6779999999654211 1112235789999999999999888 8999999999999988654
No 168
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.37 E-value=3.5e-07 Score=46.22 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=48.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..||.+-+||.... ..+...++.|...+.-+-|+|..+. .|++++.||.+-.||-.+
T Consensus 198 gt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 567899999998764 3334467899999999999998877 899999999999998653
No 169
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.36 E-value=3.6e-06 Score=48.53 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=46.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+..+.|.+|.....+... .+.+|.+.+..+.++.++. ++++++.|+++++|++.+++
T Consensus 151 gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSRE 208 (967)
T ss_pred ccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeeccccc
Confidence 3445678888876322222 5789999999999999999 99999999999999998764
No 170
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.35 E-value=7.9e-06 Score=46.65 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=48.3
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+|-.+|.|.++++..++.+. .++...++|..++|..+|.. ++++++..|.+.+||++..+
T Consensus 219 iG~~~G~ViifNlK~dkil~---sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILM---SFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred EeccCceEEEEEcccCcEEE---EEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCe
Confidence 36678999999998765443 56644689999999999986 78888888999999997653
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.35 E-value=1.5e-06 Score=47.33 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=46.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+++.+|.|.+||....... ..-.+.|..+...++|+|.+.- ++++.+.|..|.+||.+..
T Consensus 182 ~asd~G~VtlwDv~g~sp~--~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPI--FHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eeccCCeEEEEeccCCCcc--cchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccc
Confidence 3567899999999764211 1134678999999999998764 7889999999999998754
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.32 E-value=1.3e-06 Score=47.55 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=47.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+..+.|+|||++.... .+.+++|++.|.++.++-... ++++++..|-|.+..+.++.
T Consensus 97 gG~~~~Vkiwdl~~kl~---hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLI---HRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred cCcCceeeehhhHHHHH---hhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCc
Confidence 56788999999984322 235789999999999987777 99999999999999887753
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=3.3e-06 Score=49.44 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=48.6
Q ss_pred CccccCeEEEEECCCCceEeeeEEeeccccc--EeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|..||.+++||..-......+...+.|+.. |..+.+.+.+-. .+++++.+|.|.+||++.
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEeccc
Confidence 3678999999998654433445567778776 999999887764 699999999999999986
No 174
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=5.7e-06 Score=47.45 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=41.1
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
..|+.|++|+..+-...... ..+.+...+..++|+|.|. +|++++.++.|.+||+.+
T Consensus 207 ~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~--YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNGK--YIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCeEEEEccCCceeheee-cccccccceEEEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence 35778888887653222111 1223334488999999999 999999999999999984
No 175
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.24 E-value=1.3e-05 Score=38.92 Aligned_cols=52 Identities=17% Similarity=0.408 Sum_probs=36.1
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNG 63 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~ 63 (65)
.+..+.+||++.. .+..+. ...+..+.|+|.+. +++.++. .|.+.+||.++.
T Consensus 81 ~~~~v~lyd~~~~----~i~~~~--~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 81 MPAKVTLYDVKGK----KIFSFG--TQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCcccEEEcCccc----EeEeec--CCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCC
Confidence 3456888888522 122343 45668899999999 7887754 467999999764
No 176
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.21 E-value=2.2e-05 Score=40.75 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=44.4
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC-cEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK-TIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~-~i~~w~~~~~~ 64 (65)
-|+|.|-|+..... .....+.+|.+.|.|++.+.+|. .++|++..| .|++||..+|.
T Consensus 158 ~GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 158 TGQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred cceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCc
Confidence 47788888754322 12235789999999999999999 999999887 57899998875
No 177
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.20 E-value=7.7e-06 Score=45.91 Aligned_cols=51 Identities=20% Similarity=0.476 Sum_probs=41.6
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|.+|+..+ ......+.+|.-.|+.++|+|++. +|++.+.|+++.+|....
T Consensus 553 vI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~--~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 553 VIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGR--YLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred EEEEEeccc---hhhhheecccceEEEEEEECCCCc--EEEEeecCceEEeeeeec
Confidence 477888764 222336889999999999999999 999999999999997643
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.19 E-value=2.9e-05 Score=43.08 Aligned_cols=54 Identities=11% Similarity=0.270 Sum_probs=41.2
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+.+.+|++....... ..+. ....|.++.|+|..+. +++.|+.+|.|.+||++.+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~ 275 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKG 275 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCC
Confidence 368899997642222 2333 4578999999998886 8888899999999999875
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=1.3e-05 Score=45.65 Aligned_cols=61 Identities=20% Similarity=0.386 Sum_probs=48.1
Q ss_pred ccccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|..||.|.+|.-.. .........++-|-..|.+++|++++. +|++|+..+.+.+|...+++
T Consensus 223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred eccCCcEEEEeccccccccccceEEEecccccceeEEecCCc--eEeecccceEEEEEeecCCC
Confidence 56789999996432 222223346778888999999999999 99999999999999998764
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=9.7e-06 Score=45.10 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=42.9
Q ss_pred ccccCeEEEEE------CCCCceEeeeEEeeccccc----EeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 2 AYSRHIVQIYP------CNGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 2 ~~~~~~i~i~~------~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
|+.|+++.||- +.......++..+.+|... |..+.|+|..+ .+++++.|++|++|.
T Consensus 668 ~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp--WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 668 GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP--WLFSAGADGTIRLFT 733 (733)
T ss_pred ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc--eEEecCCCceEEeeC
Confidence 56678888764 3333345666678888654 88899999999 899999999999983
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=1.8e-05 Score=44.30 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=41.8
Q ss_pred CccccCeEEEEECCCCceEee-eE---Eeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQ-HL---EIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~-~~---~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.|+.||.|++||..++..... .+ .+.. ...-|+++.|-.++ .+++|.+.|+|.+||...|.
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcc
Confidence 377899999999987653331 11 1211 22346777777544 58999999999999987763
No 182
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.17 E-value=4.1e-06 Score=47.57 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=46.5
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..|.++.+||+.++.... ...+|...|+++.|.++.+ +|++.+.|+-|.+|.+.
T Consensus 660 csdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~nDCk--HlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFLNDCK--HLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecCCceEEEEeccchhhh---hhcCcchheeeeeecccch--hheeecCCceEEEEECc
Confidence 467889999998876444 4668999999999999999 99999999999999874
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.17 E-value=8.4e-07 Score=50.69 Aligned_cols=58 Identities=24% Similarity=0.507 Sum_probs=49.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..++||+.++...+. .+.+|.+.++.++.+..+. .+++++.|..|++|.+..+.
T Consensus 208 gsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 208 GSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred cCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEecCCCc
Confidence 6778899999988765444 6889999999999987777 89999999999999988764
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.17 E-value=4.6e-05 Score=37.08 Aligned_cols=51 Identities=16% Similarity=0.402 Sum_probs=36.7
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC------CCcEEEEECC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD------DKTIKVWDAT 61 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------~~~i~~w~~~ 61 (65)
..|.+.+||..+..... .. .| ..+..++|+|++. +++++.. |..+++|++.
T Consensus 123 ~~G~l~~wd~~~~~~i~---~~-~~-~~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKIS---TF-EH-SDATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEee---cc-cc-CcEEEEEEcCCCC--EEEEEEeccceeccccEEEEEec
Confidence 35779999998644322 22 23 3468999999999 8888653 6888999885
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.14 E-value=7.5e-06 Score=45.96 Aligned_cols=59 Identities=19% Similarity=0.470 Sum_probs=44.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCC-cEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~~i~~w~~~ 61 (65)
|+.+..+.+|..... .......+.+|.+.|+.++|...+. .+++++++.|.+|++|.+.
T Consensus 165 Ggs~~~v~~~s~~~d-~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~ 224 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSAD-SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIV 224 (764)
T ss_pred cCcceEEEEeccCCc-ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence 455666777776543 4555667899999999999976433 3389999999999999875
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.13 E-value=2.6e-06 Score=48.83 Aligned_cols=52 Identities=31% Similarity=0.592 Sum_probs=42.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
++++|..|++|.+..+.... .+.+|++.|++++|+|.. +.+.|+++++||.+
T Consensus 249 aaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDAR 300 (1113)
T ss_pred hcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEecccc
Confidence 36788899999998765333 678999999999998754 34789999999987
No 187
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.12 E-value=3.9e-06 Score=45.95 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=39.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+.-.++-|||+.... ......+....-...+++.+|+.+ +.++|+.||.|.+||+++.
T Consensus 483 GGeastlsiWDLAapT-prikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccc
Confidence 4445578899986432 111112222222345688999999 9999999999999999864
No 188
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.11 E-value=3.5e-05 Score=39.80 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=44.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|+.|+.+.-||+...+... -...+-|...|.++.-+|..+. ++++|+.|-.|++||.++
T Consensus 183 tGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~-~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPT-YIATGSYDECIRVLDTRN 242 (339)
T ss_pred ecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCc-eEEEeccccceeeeehhc
Confidence 36788999999987322111 1124567888999988876555 899999999999999984
No 189
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=42.48 Aligned_cols=61 Identities=13% Similarity=0.278 Sum_probs=43.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEe--EEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVN--DIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.+.+|.|++||+...+....++.+.+|...-. -+..++++. .+++++.|...++|.++.|.
T Consensus 317 S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 317 SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred ccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCc
Confidence 45678999999875443334557788854332 234455666 88899999999999998763
No 190
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.09 E-value=3.7e-05 Score=42.42 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=41.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+|..||+|.+||...+... +....-....++|||++. .++.|+..|.+.+||.-
T Consensus 276 lGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEee
Confidence 3678999999998764321 111223457899999999 99999999999999974
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=2.6e-05 Score=43.32 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=47.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|+.||...+|+-.++.... .+.+..+.+.|++-+|... .+++.+-|.+|++|....
T Consensus 641 sgSddgr~fiwek~tg~i~a---v~~gdssivnciqghP~~~--~latSgiDstiKIwsp~a 697 (758)
T KOG1310|consen 641 SGSDDGRFFIWEKLTGSILA---VIHGDSSIVNCIQGHPRCP--TLATSGIDSTIKIWSPEA 697 (758)
T ss_pred EecCCCceEEeecCCcceEE---EeeCchhheeeccCCCCCc--eeeeccCccceEEecccC
Confidence 36788999999988876444 5677778889999999998 899999999999998654
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.02 E-value=6.6e-05 Score=39.56 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=44.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.++.|.+|++....... .+.....++...+|+|++.. .+.+...+..|.+|.+.+.
T Consensus 67 ~yk~~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred eeccceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccc
Confidence 3457789999987644333 45556678899999999974 6667788999999988654
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.00 E-value=3.5e-05 Score=40.15 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=47.8
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
-+++.+.||.........+...++.|...|.+++|.|..+ .|.+|+.|..-++|....
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 3556788998876554666667889999999999999998 799999999999998743
No 194
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.98 E-value=0.00021 Score=36.54 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=43.3
Q ss_pred ccCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecC-CCcEEEEECCC
Q 039404 4 SRHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD-DKTIKVWDATN 62 (65)
Q Consensus 4 ~~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-~~~i~~w~~~~ 62 (65)
.|+.+.+|+... .. ....+..|...+..++|+|.+. .++.++. ++.+.+|+...
T Consensus 132 ~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 132 LDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred CCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCC
Confidence 377899999875 22 2235778888999999999998 7888775 99999999875
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.98 E-value=0.00019 Score=36.66 Aligned_cols=55 Identities=22% Similarity=0.489 Sum_probs=41.8
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.+++|+........ .+.+|...+.+++|+|++.. .+++++.|+.+++||...+
T Consensus 177 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~-~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 177 DGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CCceEEEEcCCCceEE---eeccCCCceEEEEEcCCcce-EEEEecCCCcEEEEECCCC
Confidence 8899999997633232 46668899999999988862 4445589999999987643
No 196
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=49.00 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=43.8
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.++.+.+||.........+. ..|.+.++++++-|..+ ++++|+.+|.+++||++..
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--llisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEEecCCcCcEEEeehHHH
Confidence 45678999975432222222 67888999999999999 9999999999999999754
No 197
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.94 E-value=0.0001 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=27.7
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
...|..++|+|... +++.+..+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 35688999999999 99999999999999883
No 198
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.94 E-value=2.7e-05 Score=43.56 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=45.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|++|....+|.+.+.. .....+.+|...|.+++|.|.... .+++|+.|..+++|++..+
T Consensus 335 gSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t-~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATT-PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCC-CceeeccCcceEEEeccCc
Confidence 5678888889886532 222346789999999999987655 6888899999999998654
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.00012 Score=40.81 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=44.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|+.|..+.|||....+.+.. .-.+|...|.+++|-|....-.+++|..|..|+++|+..
T Consensus 68 GSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 68 GSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 66777899999875443332 235899999999999854321788999999999999874
No 200
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.92 E-value=5.4e-05 Score=40.17 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=30.7
Q ss_pred eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+-||+.-|..++.-+ +. .|++++.|+++++||+++|+
T Consensus 190 clGH~eFVS~isl~~-~~--~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTD-NY--LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ccccHhheeeeeecc-Cc--eeeecCCCCcEEEEecccCC
Confidence 457888888888753 45 68999999999999999885
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=0.00021 Score=37.92 Aligned_cols=55 Identities=9% Similarity=0.359 Sum_probs=41.0
Q ss_pred cccC-eEEEEECCCCceEeeeEEeec--ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 3 YSRH-IVQIYPCNGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 3 ~~~~-~i~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+..| .|++|++.++.... +|+. ....|..++|+|+++ +|.+.+...+|.++.++.
T Consensus 192 SeKGTVIRVf~v~~G~kl~---eFRRG~~~~~IySL~Fs~ds~--~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLY---EFRRGTYPVSIYSLSFSPDSQ--FLAASSNTETVHIFKLEK 249 (391)
T ss_pred ccCceEEEEEEcCCccEee---eeeCCceeeEEEEEEECCCCC--eEEEecCCCeEEEEEecc
Confidence 3444 47899998776444 3432 134678899999999 999999999999998764
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.85 E-value=1.4e-05 Score=44.23 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=39.2
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+++||.+.+.+-... ..+...+|.+.+.+-.|+|++. -+++++.||.|++|.-
T Consensus 81 ~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 81 CSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSR 133 (737)
T ss_pred EcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEec
Confidence 455666655443221 1224678999999999999999 8999999999999964
No 203
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.00012 Score=39.77 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+++.|+.+++|.+...... .+..+.-...+|.+..|.|.+.+ .+++++...++..||+.+++
T Consensus 230 vaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~-~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 230 VAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHS-VIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred EecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCce-EEEecccceEEEEeeccccc
Confidence 4678999999998654322 22233334578999999999987 78889999999999998764
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.00017 Score=38.37 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=39.3
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
.|..|.|||..++.... . ..-..+.+.-+.|+|++. +++++..|+..++|+.
T Consensus 216 gsssi~iWdpdtg~~~p-L--~~~glgg~slLkwSPdgd--~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP-L--IPKGLGGFSLLKWSPDGD--VLFAATCDAVFRLWQE 267 (445)
T ss_pred CcceEEEEcCCCCCccc-c--cccCCCceeeEEEcCCCC--EEEEecccceeeeehh
Confidence 35679999998765332 1 112345678899999999 9999999999999954
No 205
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.80 E-value=0.00044 Score=38.30 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=29.3
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+.++.+++|+|++. +++.++.|+.|+++.+..
T Consensus 447 ~~~ls~v~ysp~G~--~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGA--FLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred CCceEEEEEcCCCC--EEEEecCCCeEEEEEECC
Confidence 67899999999999 999999999999998754
No 206
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.79 E-value=0.0003 Score=38.92 Aligned_cols=56 Identities=13% Similarity=0.310 Sum_probs=44.1
Q ss_pred CccccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+|+.|+.|.+|.+.... .......+.+ ++|..++|+++++ ++.+.+-|..+..|..
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~--~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQ--FLVSNSGDYEILYWKP 520 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCc--eEEeccCceEEEEEcc
Confidence 47889999999986533 3443444444 8999999999999 9999999999999944
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=1.8e-05 Score=43.12 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|+.-|.|.+|+-.++..+. .+++....|+|+.=+|-.+ +|++++.|..|++|...+
T Consensus 412 GSDCGhIFiW~K~t~eii~---~MegDr~VVNCLEpHP~~P--vLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 412 GSDCGHIFIWDKKTGEIIR---FMEGDRHVVNCLEPHPHLP--VLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cCccceEEEEecchhHHHH---HhhcccceEeccCCCCCCc--hhhccCCccceeeecCCc
Confidence 4556889999987765332 4556666889999999998 999999999999998743
No 208
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.73 E-value=0.00012 Score=38.51 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=38.2
Q ss_pred cCeEEEEECCCCceEeeeEEeecccc---cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+-.|..||+... ..++..+..|.. .-..+...|.+. +|++++.+|.|++||++.
T Consensus 272 ~dkIl~WDiR~~--~~pv~~L~rhv~~TNQRI~FDld~~~~--~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 272 DDKILCWDIRYS--RDPVYALERHVGDTNQRILFDLDPKGE--ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCeEEEEeehhc--cchhhhhhhhccCccceEEEecCCCCc--eeeccCCCccEEEEecCC
Confidence 556889998753 233334555543 333456678888 999999999999999976
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.72 E-value=7.7e-05 Score=41.51 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=41.9
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..++||+..... .+...+..+...+.+++|+|..+. .++++..+|.+.+||+..
T Consensus 419 DW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 419 DWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceeEeccccCCC--CcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhc
Confidence 7889999976221 222245667777999999998875 777888899999999864
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.00037 Score=37.55 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=37.8
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~ 64 (65)
+..|.+||..... .. .+..+...+...+|+|++. .++..+. +..|.+||+.+++
T Consensus 183 ~~~i~i~d~dg~~-~~---~lt~~~~~v~~p~wSPDG~--~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 183 PYEVRVADYDGFN-QF---IVNRSSQPLMSPAWSPDGS--KLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred eEEEEEECCCCCC-ce---EeccCCCccccceEcCCCC--EEEEEEecCCCcEEEEEeCCCCc
Confidence 4578888876432 22 3455667789999999999 6665543 3479999998763
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.68 E-value=0.00034 Score=36.67 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=46.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|+.|..-++|....+....+...+..++..++++.|+|.+. .+++++....|.+|-++.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQ 131 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEec
Confidence 45666677888855555666666777888999999999999 899999999998886653
No 212
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.67 E-value=0.00044 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=32.8
Q ss_pred EEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCC
Q 039404 23 LEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNG 63 (65)
Q Consensus 23 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~ 63 (65)
..+.+|.+.|+.++|.+++. .++++. .+..|..||++.-
T Consensus 244 ~llggh~gGvThL~~~edGn--~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGN--KLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeecccCCCeeeEEeccCcC--eecccccCCCeEEEEeehhc
Confidence 35678999999999999999 788865 5789999999753
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.66 E-value=0.00098 Score=40.29 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=41.5
Q ss_pred CccccCeEEEEECCCCc----eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.|+.||+|++|++..-. .......+....+++.++...+.+. .++.++.||.|.+.++..
T Consensus 1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCeEEEEEccc
Confidence 37889999999985321 1111112332356778888888888 788889999999987753
No 214
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00082 Score=37.98 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.7
Q ss_pred ccccEe-EEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 28 HVGGVN-DIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 28 ~~~~v~-~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+...+. +++|.|+|+ .++.+-.||+|++.|+.+|.
T Consensus 60 p~~~v~~sL~W~~DGk--llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGK--LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred CCCccceeeeecCCCC--EEEEEecCCeEEEEEccCCC
Confidence 344444 999999999 99999999999999998763
No 215
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.59 E-value=0.0012 Score=36.81 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=30.1
Q ss_pred ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 28 ~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.++.+.+++++|++. .++.|+.||.|.+||...+
T Consensus 258 L~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~ 291 (545)
T PF11768_consen 258 LPSQVICCARSPSED--KLVLGCEDGSIILYDTTRG 291 (545)
T ss_pred cCCcceEEecCcccc--eEEEEecCCeEEEEEcCCC
Confidence 456789999999999 8999999999999998765
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00039 Score=40.05 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred ccccCeEEEEECCCCc-------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.|+.+++|.+.... .+.....-.-|..++...+|+.+|. +++++.+.+|.+||+.+
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs---lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS---LLAVSFDDTITIWDYDT 539 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc---EEEEecCCEEEEecCCC
Confidence 4678999999883221 1111111112677889999999998 45667899999999987
No 217
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0012 Score=35.72 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=43.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.+..|+|.|+++..... .+..+ ..+++++|..++.. ++..|...|.|.++|.+..
T Consensus 212 asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 212 ASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEEEEccCC
Confidence 4567789999998754332 45555 67899999888775 8888889999999999864
No 218
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.52 E-value=0.0016 Score=34.71 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=35.1
Q ss_pred eeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 21 QHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 21 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++..+.+|.+.+.+.+|.+... .++++..|..+.+||+--
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG 228 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccC
Confidence 3456789999999999999888 999999999999999853
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00088 Score=37.69 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=42.7
Q ss_pred ccccCeEEEEECCCCceEee---eEEeecccc-----cEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQ---HLEIDAHVG-----GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~ 65 (65)
|..+|.+..||......... ......|.+ .|+++.|+-++- .++.|..+|.+.++|+++.++
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCc
Confidence 45688999999765331111 111122322 389999987777 899999999999999987643
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.51 E-value=0.00086 Score=34.57 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.3
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCCC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGVK 65 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~~ 65 (65)
-.+..+..-|+++ .+++++.|+.++++..++.++
T Consensus 252 pGv~gvrIRpD~K--IlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 252 PGVSGVRIRPDGK--ILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred CCccceEEccCCc--EEeecccCCcEEEEEeccCCc
Confidence 3567888899999 999999999999999887653
No 221
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.0013 Score=36.04 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=38.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccc-cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
++.+|.|.+|++....... .+....+ .-..++.++.+. ++++|+..|.|.+||..+
T Consensus 362 ~~~~GeV~v~nl~~~~~~~---rf~D~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLH---RFVDDGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EcCCceEEEEecCCcceEE---EEeecCccceeeeeecCCCc--eEEeccCcceEEEeccch
Confidence 3457889999998753322 3432211 125567778888 999999999999998654
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.49 E-value=0.0038 Score=33.39 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.+.+.|..+.+... .+......-..+.|+|++. +++.++.|+.+.++|+.+.+
T Consensus 14 ~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVA---RIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp GGTEEEEEETTT-SEEE---EEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEEETTSSS
T ss_pred CCCEEEEEECCCCeEEE---EEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEEECCccc
Confidence 46788899987755343 4544333334578999999 88888899999999998764
No 223
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=97.47 E-value=0.00084 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.0
Q ss_pred cEeEEEecCCCC--cEEEEEecCCCcEEEEECCC
Q 039404 31 GVNDIAFSHPNK--QLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 31 ~v~~~~~~~~~~--~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+++++|+|.+. . +|+-....+.+.++|.++
T Consensus 2 AvR~~kFsP~~~~~D-LL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGND-LLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCccc-EEEEEccCCeEEEEEccc
Confidence 578999997544 4 777778889999999984
No 224
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.46 E-value=0.0009 Score=34.88 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 19 VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 19 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+......+.|.-.++-..|+..+++ ++.+|+.|+.+..||.+
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEec
Confidence 3444467788888888999877766 89999999999999998
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.44 E-value=0.00074 Score=37.66 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=28.8
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+.|..++|+|+++ +|++.+.|++++++++.+
T Consensus 290 ~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 290 EGSINEFAFSPDGK--YLATVSQDGFLRIFDFDT 321 (636)
T ss_pred cccccceeEcCCCc--eEEEEecCceEEEeeccH
Confidence 34678899999999 999999999999999875
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.40 E-value=0.00061 Score=40.03 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=42.4
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.+.|.++++|++.+.+... ...-+|..++..+.|+|. .+++++.|-+.++|+..
T Consensus 193 ~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVN 246 (967)
T ss_pred EecCcceeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecc
Confidence 4678999999998765332 134479999999999864 58899999999999553
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00067 Score=38.13 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=38.3
Q ss_pred EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|.-+.++.+.-+. ++....+.++++..++.+. ++++|+.++.+-+||.++.
T Consensus 157 vYRlNLEqGrfL~---P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 157 VYRLNLEQGRFLN---PFETDSGELNVVSINEEHG--LLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eEEEEcccccccc---ccccccccceeeeecCccc--eEEecccCceEEEecchhh
Confidence 4444555443333 4555667889999999998 8999999999999999864
No 228
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.39 E-value=0.0018 Score=33.55 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=41.6
Q ss_pred CccccCeEEEEECCCCceE--eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.+|+++.|||+.....+ .....-+.|.+.++.+.|++.+..=+|+-...-+.+.+.|.++++
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 3578999999998754311 111123457889999999986652134444455678888887763
No 229
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.00062 Score=38.42 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=41.5
Q ss_pred ccccCeEEEEECCCCc-e---EeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGD-E---VRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
++.|.++++|++.... . ......+..|+.+|..+.|-.+.. .++++ |+.+.+||.--|
T Consensus 753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcceeeccccc
Confidence 5678999999986421 1 112335678999999999987776 66654 889999997544
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00098 Score=35.74 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=44.9
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.-+++++||...+. .++..+.-...++.++...|.+. +++++...+.+..+|.+.++
T Consensus 224 ~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred cceeEEEecCcccC--cceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCce
Confidence 34678999987543 34445655567889999999999 89999999999999998764
No 231
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.38 E-value=0.0014 Score=36.83 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=31.6
Q ss_pred eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.++|.+-|.+++|++.+. ++++++.|-..++||-.
T Consensus 182 WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 182 WRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EeccCcEEEEeecCcccc--ceeecCCceeEEeeccc
Confidence 467888899999999999 99999999999999864
No 232
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.0034 Score=32.25 Aligned_cols=58 Identities=9% Similarity=0.217 Sum_probs=35.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEee------cc-cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEID------AH-VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.|+.||++++||..+++....+..++ .| ...|-+++- ++. .+.+ +....+.+|.++..
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed--WlvC-GgGp~lslwhLrss 237 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED--WLVC-GGGPKLSLWHLRSS 237 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc--eEEe-cCCCceeEEeccCC
Confidence 37889999999999876544332222 12 223445554 344 4444 44567888988764
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.31 E-value=0.00045 Score=41.62 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=30.9
Q ss_pred EeecccccEeEEEecCCC-CcEEEEEecCCCcEEEEECCC
Q 039404 24 EIDAHVGGVNDIAFSHPN-KQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+..|...+..++.++++ . ++++|+.||+|++|+.+.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s--~FvsgS~DGtVKvW~~~k 1080 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTS--LFVSGSDDGTVKVWNLRK 1080 (1431)
T ss_pred hhhhccccccceeecCCCCc--eEEEecCCceEEEeeehh
Confidence 456777778888888777 6 999999999999999864
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.00051 Score=37.19 Aligned_cols=61 Identities=8% Similarity=0.045 Sum_probs=43.6
Q ss_pred ccccCeEEEEECCCCc---eEeeeEEe-ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.|..+++|.+.... ...++... ..|.+.|.++.|...+. ++++|+.++++.+.|+++.+
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~VI~HDiEt~q 138 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTVIKHDIETKQ 138 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcceeEeeecccce
Confidence 5567778899875311 11222111 23568899999998888 99999999999999998753
No 235
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.00086 Score=35.70 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=39.5
Q ss_pred ccccCeEEEEECCCCc--eEeeeEEeecccccEeEEEecC-CCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGD--EVRQHLEIDAHVGGVNDIAFSH-PNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..+|.|..+|+..+. ...+...+ -|.+.|++++.-. +++ +|.+.+++++|.+||.+.
T Consensus 270 GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 270 GCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehh
Confidence 4457888888986431 11111122 3777788877655 455 899999999999999874
No 236
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.00074 Score=35.60 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=27.9
Q ss_pred EeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
..++.|++.|. +++.|+.+|.+.+||+.+.
T Consensus 26 a~~~~Fs~~G~--~lAvGc~nG~vvI~D~~T~ 55 (405)
T KOG1273|consen 26 AECCQFSRWGD--YLAVGCANGRVVIYDFDTF 55 (405)
T ss_pred cceEEeccCcc--eeeeeccCCcEEEEEcccc
Confidence 68999999999 9999999999999999764
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0036 Score=33.69 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=28.9
Q ss_pred ecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCCCC
Q 039404 26 DAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATNGV 64 (65)
Q Consensus 26 ~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~~~ 64 (65)
++| .+|.+++|++++. .+++++ .|..|.+||+.++.
T Consensus 193 pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred CCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCC
Confidence 344 5799999999998 677765 56899999998874
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.18 E-value=0.006 Score=32.69 Aligned_cols=57 Identities=28% Similarity=0.262 Sum_probs=38.0
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~~~~ 64 (65)
++.|+.|.++|+.+.+... .++.- ....+++++++++ +++++ ..++.+.++|.++.+
T Consensus 54 ~~rdg~vsviD~~~~~~v~---~i~~G-~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 54 ANRDGTVSVIDLATGKVVA---TIKVG-GNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EETTSEEEEEETTSSSEEE---EEE-S-SEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--
T ss_pred EcCCCeEEEEECCcccEEE---EEecC-CCcceEEEcCCCC--EEEEEecCCCceeEecccccc
Confidence 3457899999998876443 34322 3357899999999 66654 578999999987653
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.17 E-value=0.00066 Score=36.04 Aligned_cols=58 Identities=24% Similarity=0.523 Sum_probs=43.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|+.|..+.+||+...+.. ...+.+|...|..+..-+.-. .+++++.|+.|-+|+....
T Consensus 215 g~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~~~~t~--~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSYAQHTR--QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccccCceEEEeccCCcce--eeeeccchhhhhhhhhhhhhe--eeeeccCCCeEEEEeccce
Confidence 567888999998654322 235677888888887766666 7999999999999987653
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.13 E-value=0.0086 Score=32.50 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=34.5
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc--EEEEECCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT--IKVWDATNG 63 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~--i~~w~~~~~ 63 (65)
+..|.+||+.++.. . .+..+.+.+...+|+|++.. ++++.+.++. |.+||+.++
T Consensus 225 ~~~i~~~dl~~g~~-~---~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 225 RPRVYLLDLETGQR-E---LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCEEEEEECCCCcE-E---EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCC
Confidence 35688888876542 2 23344556678899999983 3445555544 666787665
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.10 E-value=0.011 Score=32.09 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec---CCCcEEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG---DDKTIKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~~~~i~~w~~~~~~ 64 (65)
.|.++|..... .. .+..+...+...+|+|++. .++..+ .+..|.+||+.+++
T Consensus 183 ~l~~~d~dg~~-~~---~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~ 237 (435)
T PRK05137 183 RLAIMDQDGAN-VR---YLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQ 237 (435)
T ss_pred EEEEECCCCCC-cE---EEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCc
Confidence 56677764432 22 3555677889999999998 555543 34689999998764
No 242
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0073 Score=33.00 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=41.8
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
|..+++|...|+++...+.. ..-....+.|..+..+|... .+++.+.++.+.+||.+..
T Consensus 123 G~~~~~VI~HDiEt~qsi~V-~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYV-ANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred CCCcceeEeeecccceeeee-ecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCC
Confidence 45667777778776543331 01112245789999999977 8999999999999998754
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.0035 Score=35.05 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=39.0
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-----CCcEEEEEecCCCcEEEEECC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-----NKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.++|++|++++++.. ..|.+|.++|++++|... +.. +|.+...+..+.+|-++
T Consensus 163 s~~ik~~~~~~kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVV---ITFTGHGSPVRTLSFTTLIDGIIGKY-VLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEE---EEecCCCcceEEEEEEEeccccccce-eeeccccccceeEEEEE
Confidence 478999999986543 479999999999999765 442 44455566777888554
No 244
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0028 Score=34.15 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=40.7
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
|..||.|.|++..+-.... ..-+.|...|+.+.|+|+.. .+++.+.+....+..+
T Consensus 299 GT~dGsVai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKL 353 (398)
T ss_pred eccCCcEEEEEeceeeeeE--eehhhheeeeeeEEEcCCcC--cccccccCCceeEEEE
Confidence 5678999999987533222 12357888999999999998 7888777877766544
No 245
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.02 E-value=0.012 Score=30.74 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=35.5
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
..|..|.+................+.-.+.+|+.... .++++..|+++.+||++.
T Consensus 180 ~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 180 RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred CcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence 3456666654221111112223344557889988777 899999999999999985
No 246
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.00 E-value=0.012 Score=30.68 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=37.6
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEECC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDAT 61 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~~ 61 (65)
..++.|.+|++.+...+.....+. ..+....++++|+++ +++.+ ..++.+..|++.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~--~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR--HLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC--EEEEEECCCCcEEEEEEC
Confidence 457889999996432233333343 234567889999998 66554 467889889885
No 247
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.0005 Score=39.80 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=42.3
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+....+.+||...+. .+...+++|...+..++|+.-... .+.+++.|+++.+||+..
T Consensus 177 shg~~i~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccCCceEEEeccCCC--cceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccc
Confidence 344568899987653 233367888888888888764333 688999999999999864
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.90 E-value=0.0091 Score=32.42 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=34.8
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~ 64 (65)
.|.+||..... .. .+..+...+...+|+|++. .++..+. +..+.+|++.+++
T Consensus 185 ~l~i~D~~g~~-~~---~lt~~~~~v~~p~wSpDg~--~la~~s~~~~~~~l~~~dl~~g~ 239 (433)
T PRK04922 185 ALQVADSDGYN-PQ---TILRSAEPILSPAWSPDGK--KLAYVSFERGRSAIYVQDLATGQ 239 (433)
T ss_pred EEEEECCCCCC-ce---EeecCCCccccccCCCCCC--EEEEEecCCCCcEEEEEECCCCC
Confidence 57778875432 22 2445566788999999998 6665442 3478899997764
No 249
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.0089 Score=36.26 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=36.2
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-CCcEEEEEecCCCcEEEEECCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
...|+|||.........+ .. +....++.++-+.. +. .++.|..||.++++|.+..
T Consensus 1186 ~r~IRIWDa~~E~~~~di-P~-~s~t~vTaLS~~~~~gn--~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADI-PY-GSSTLVTALSADLVHGN--IIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred eeEEEEEecccceeEeec-cc-CCCccceeecccccCCc--eEEEeecCCceEEeecccC
Confidence 457999999764322211 11 23344566655443 45 8999999999999998865
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.014 Score=32.87 Aligned_cols=56 Identities=18% Similarity=0.080 Sum_probs=40.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|..+..|+........ ..++.+..+..++.+|++. .++++ .+.|.+||+++++
T Consensus 120 ~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~is~D~~--~l~~a--s~~ik~~~~~~ke 175 (541)
T KOG4547|consen 120 VGADLKVVYILEKEKVIIR---IWKEQKPLVSSLCISPDGK--ILLTA--SRQIKVLDIETKE 175 (541)
T ss_pred cCCceeEEEEecccceeee---eeccCCCccceEEEcCCCC--EEEec--cceEEEEEccCce
Confidence 3456667777776543333 5666677788899999998 77776 4689999998764
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0087 Score=33.61 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=37.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC------CCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD------DKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------~~~i~~w~~~~ 62 (65)
|..-|.+-+||..+.+... .+.. ....-+.|+|++. +++++.. |+.+++|.+..
T Consensus 332 GNL~G~mEvwDv~n~K~i~---~~~a--~~tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIA---KFKA--ANTTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCCCceEEEeccchhhcc---cccc--CCceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecC
Confidence 3445788999987744332 3332 3346789999999 8888754 57888898754
No 252
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.82 E-value=0.0062 Score=31.55 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=28.9
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+.|..|+.+|++. .|++...+|.+.+|++-+
T Consensus 229 ~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 229 QDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCceEEEEECCCCC--EEEEEEcCCeEEEEecCc
Confidence 46789999999999 999999999999998854
No 253
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.81 E-value=0.028 Score=30.62 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=31.0
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEE--ECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVW--DATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w--~~~~~ 63 (65)
..|.+||+.++.. ..+..+.++ ....+|+|++. .++.+ ..++.+.+| |+.++
T Consensus 228 ~~i~i~dl~tg~~-~~l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 228 SQLVVHDLRSGAR-KVVASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred cEEEEEeCCCCce-EEEecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCC
Confidence 4688899876532 212223333 34689999998 55554 467766555 55443
No 254
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.80 E-value=0.016 Score=30.16 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=34.1
Q ss_pred cCeEEEEECCCCc-eEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCC
Q 039404 5 RHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATN 62 (65)
Q Consensus 5 ~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~ 62 (65)
++.+.+|++.... .......+.+ ......++++|++. +++ +...++.|.+||+.+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECC
Confidence 5778888886321 1111112222 22346788999998 554 455679999999865
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.79 E-value=0.03 Score=31.48 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=42.3
Q ss_pred ccccC-eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRH-IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|..|+ .+-+|+..++... .+...-+.|.++..+++++ .++.+.....+-+.|+.+|+
T Consensus 377 gt~dgD~l~iyd~~~~e~k----r~e~~lg~I~av~vs~dGK--~~vvaNdr~el~vididngn 434 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVK----RIEKDLGNIEAVKVSPDGK--KVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred eccCCceEEEEecCCceEE----EeeCCccceEEEEEcCCCc--EEEEEcCceEEEEEEecCCC
Confidence 45566 6788888775422 3455567899999999999 88887777777777888874
No 256
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.0078 Score=33.48 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=44.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|+++++-.+...........+..|.++|..++.-|..+. .+.+++.|+.+.-.|++++.
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCC
Confidence 456777777555332222223345568899999999998876 78999999999999988764
No 257
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.72 E-value=0.031 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=32.6
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~ 64 (65)
..|.+|++.++... .+....+.....+|+|++.. ++++.+.++ .|.+||+.+++
T Consensus 228 ~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 228 SAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred cEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCC
Confidence 45778888665422 12223333457899999983 334444444 68888987653
No 258
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.64 E-value=0.017 Score=33.42 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=42.4
Q ss_pred CccccCeEEEEECCCCceEee---eEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+|...+.|.++.++....... ...-+.|...|++++|++++. .+++|...|.|.+-.+..
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 356678888888765321111 112245778999999999999 899999999988765543
No 259
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.0022 Score=38.45 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=30.8
Q ss_pred ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 28 ~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
-.++|.+++|+.++. .++.|-.+|.|.+||...++
T Consensus 129 v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred cCCcceeeEecCCCc--eeccccCCCcEEEEEccCCc
Confidence 357899999999999 89899999999999998754
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.52 E-value=0.045 Score=29.34 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=32.7
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC--CcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD--KTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w~~~~~ 63 (65)
..|.+|++.++.... +..+...+...+|+|++.. ++++.+.+ ..+.+|++.++
T Consensus 214 ~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 214 PEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred cEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCccEEEEECCCC
Confidence 468888887653221 2233444567899999983 33444444 35888888765
No 261
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.48 E-value=0.053 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=30.6
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEE-EecCCC--cEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDK--TIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~--~i~~w~~~~~~ 64 (65)
..+.+|++.++.. .. +....+......|+|++. .++ +...++ .|.+||+.+++
T Consensus 223 ~~i~i~dl~~G~~-~~---l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 223 SALVIQTLANGAV-RQ---VASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred cEEEEEECCCCCe-EE---ccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence 3566777765432 21 212222344689999998 554 334444 58888987653
No 262
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.43 E-value=0.0097 Score=34.96 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=36.4
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+|+.+|.|++||-....+.. .+++-..+|.+++.+.+|.. +|+|| +..+.+.+.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT---~lp~lG~pI~~iDvt~DGkw-ilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKT---ALPGLGDPIIGIDVTADGKW-ILATC--KTYLLLIDT 646 (794)
T ss_pred EEeCCCcEEeecccchhhhh---cCCCCCCCeeEEEecCCCcE-EEEee--cceEEEEEE
Confidence 47889999999953322122 46676789999999999993 44443 445555553
No 263
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.38 E-value=0.043 Score=29.90 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=27.0
Q ss_pred eecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404 25 IDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV 64 (65)
Q Consensus 25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~ 64 (65)
+..+...+...+|+|++. .++..+. ...|.+||+.+++
T Consensus 191 l~~~~~~v~~p~wSPDG~--~la~~s~~~~~~~I~~~dl~~g~ 231 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT--KLAYVSFESKKPVVYVHDLATGR 231 (427)
T ss_pred eccCCCCcccceEcCCCC--EEEEEEccCCCcEEEEEECCCCC
Confidence 344566788999999998 5554432 3469999998764
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.37 E-value=0.014 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred eEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 33 NDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 33 ~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+.++|+|++. +++.+...|+|+++|+..
T Consensus 47 Rkl~WSpD~t--lLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 47 RKLAWSPDCT--LLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eEEEECCCCc--EEEEEcCCCeEEEEeccc
Confidence 6799999999 999999999999999864
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.34 E-value=0.0064 Score=35.62 Aligned_cols=39 Identities=23% Similarity=0.529 Sum_probs=34.8
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.+|...+..+.|+|..+. .+++++-|-.+..||.++.
T Consensus 109 ~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred EEecCccceeccccCCCCCc-ceeeccccccceeeeccCC
Confidence 46789999999999998886 8999999999999999865
No 266
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.32 E-value=0.044 Score=33.06 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=39.1
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|.+.+|...+..... ....|..++..+.|++++. .+.++..-|.+.+|.+.
T Consensus 80 ~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 4556677665432111 2346888999999999999 99999999999999764
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.018 Score=33.93 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=45.4
Q ss_pred ccccCeEEEEECCCCc------------eEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 2 AYSRHIVQIYPCNGGD------------EVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
|+.||.+++..+.+.. .+.....+.+|...|.-+.|+...+ .+.+...+|.|.+|-+-.|.
T Consensus 32 gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 32 GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccCCCceEEEEeeeccc
Confidence 5678888887654321 1222345789999999999997777 89999999999999876553
No 268
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.16 E-value=0.0065 Score=33.64 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=39.0
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+..|.++.-|+.++.... .+....+.+..++-+|.+. .+-+|...|+|.+|.....+
T Consensus 228 ~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 228 SEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred ccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcc
Confidence 334555555665544222 2333456677888899998 89999999999999887643
No 269
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.11 E-value=0.089 Score=28.74 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=30.6
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
..|.+||+.++.... +....+......|+|++.. ++++.+.++...+|.+
T Consensus 220 ~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 220 PVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQIYTV 269 (427)
T ss_pred cEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceEEEE
Confidence 357888887654221 2222344567899999983 3345667776666643
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.01 E-value=0.025 Score=30.63 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=29.8
Q ss_pred eecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 25 IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 25 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
.-+|-+.+..++++|+.+ +++++..|..|++-.+
T Consensus 147 ~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRY 180 (390)
T ss_pred hhhhhhhhheeeecCCCC--EEEEecCCceEEEEec
Confidence 457888999999999998 9999999999988544
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.98 E-value=0.18 Score=30.94 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=38.2
Q ss_pred ccCeEEEEECCCCceEeeeEE----------eecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLE----------IDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.|++||..++........ ..+.-.....+++++++. ++++-+.++.|++||+.+++
T Consensus 823 ~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~--lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 823 YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR--LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC--EEEEECCCCEEEEEECCCCc
Confidence 356788888765432211100 001112456789999998 78888889999999998763
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.89 E-value=0.028 Score=29.31 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.1
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.+++-+|..+. .+++|+.||.+.+||.++.
T Consensus 181 ~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 181 AVTALCSHPAQQH-LVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred cchhhhCCccccc-EEEEecCCCeEEEEEcccc
Confidence 4788888887665 6778889999999998864
No 273
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.69 E-value=0.15 Score=27.94 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=33.1
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec---CCCcEEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG---DDKTIKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~~~~i~~w~~~~~~ 64 (65)
.|.++|...... . .+..+...+...+|+|++. .++..+ .+..+.+|++.+|+
T Consensus 180 ~l~~~d~dg~~~-~---~lt~~~~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~ 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-F---VVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGA 234 (429)
T ss_pred eEEEEcCCCCCC-E---EeecCCCceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCC
Confidence 466677654321 1 2334556788999999998 555432 34578889987763
No 274
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.66 E-value=0.14 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=32.7
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---CCcEEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---DKTIKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---~~~i~~w~~~~~~ 64 (65)
.|.++|..... .. .+..+...+...+|+|++. .++.... ...+.+|++.+++
T Consensus 171 ~l~~~d~~g~~-~~---~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~ 225 (417)
T TIGR02800 171 ELQVADYDGAN-PQ---TITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQ 225 (417)
T ss_pred eEEEEcCCCCC-CE---EeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence 45566654322 11 2334555678889999999 6655443 2579999987763
No 275
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.66 E-value=0.051 Score=31.94 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=39.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+|++|+.+++|.-+. ..+. ........|+.++..|.++ .++.|+.||++-.+++
T Consensus 239 iGGsdk~L~~fTR~G-vrLG---Tvg~~D~WIWtV~~~PNsQ--~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDG-VRLG---TVGEQDSWIWTVQAKPNSQ--YVVVGCQDGTIACYNL 292 (1081)
T ss_pred EccCCCceEEEeecC-eEEe---eccccceeEEEEEEccCCc--eEEEEEccCeeehhhh
Confidence 367788888877542 2222 3333457899999999999 8999999999988775
No 276
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.61 E-value=0.031 Score=33.60 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=36.6
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC---------CCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD---------DKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------~~~i~~w~~~~ 62 (65)
|...|.|.+-|..+ ...+..+.+|.+.+..++. .++ +|++|+. |.++.+||++.
T Consensus 193 G~t~G~V~LrD~~s---~~~iht~~aHs~siSDfDv--~GN--lLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 193 GDTRGTVFLRDPNS---FETIHTFDAHSGSISDFDV--QGN--LLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred ecccceEEeecCCc---Cceeeeeeccccceeeeec--cCC--eEEEeecccccccccccchhhhhhhhh
Confidence 44556666666654 3344578899988877665 566 7777753 56788888875
No 277
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.56 E-value=0.069 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=23.0
Q ss_pred EeEEEecC----CCCcEEEEEecCCCcEEEEECCCCC
Q 039404 32 VNDIAFSH----PNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 32 v~~~~~~~----~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+...+.+. ... ++++.+.|+.+++||+.++.
T Consensus 217 ~~~~~~~~~~~~~~~--~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 217 AASLAVSSSEINDDT--FLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp EEEEEE-----ETTT--EEEEEETTSEEEEEETTTTC
T ss_pred cceEEEecceeCCCC--EEEEEeCCCeEEEEECCCCe
Confidence 44455555 455 89999999999999998874
No 278
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.53 E-value=0.17 Score=27.50 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=31.5
Q ss_pred EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CC--CcEEEEECCCCC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DD--KTIKVWDATNGV 64 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~--~~i~~w~~~~~~ 64 (65)
|.++|..... .. .+..+...+...+|+|++. .++..+ .+ ..+.+|++.+++
T Consensus 181 l~~~d~~g~~-~~---~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~ 234 (430)
T PRK00178 181 LQRSDYDGAR-AV---TLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGR 234 (430)
T ss_pred EEEECCCCCC-ce---EEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCC
Confidence 5555654332 11 2334556778899999998 555433 22 468888987763
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.053 Score=31.22 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=44.2
Q ss_pred cccCeEEEEECCCCceEeeeEEe--ecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+...+++++|..........+.. .+.+..+++++.-+.++ .++.+-.+|.+.+.|.++|+
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN--~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN--KLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc--hhhHHhcCCcEEEEecCCCc
Confidence 44567888888765544432222 33456688999999898 89998899999999999885
No 280
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.30 E-value=0.21 Score=27.16 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=30.1
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~ 64 (65)
.|.+|++.++.. . .+....+.+....|+|++.. ++++...++ .|.++|+.+++
T Consensus 224 ~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 224 RIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred EEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCC
Confidence 466677765432 1 12222233456899999983 333444444 57777887653
No 281
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.95 E-value=0.31 Score=27.01 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=29.3
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCc--EEEEECCCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKT--IKVWDATNGV 64 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~--i~~w~~~~~~ 64 (65)
.|.++|+.++.. .. +....+......|+|++.. ++++...++. |.++|+.+++
T Consensus 243 ~L~~~dl~tg~~-~~---lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 243 EIFVQDIYTQVR-EK---VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred EEEEEECCCCCe-EE---ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEEEEEECCCCC
Confidence 466677665432 11 2111222346799999994 3344455554 6677876653
No 282
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.075 Score=30.33 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=36.0
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+|+.+|.|++||--...... .+++-..+|..+..+.++. ++++.+ +.++.+.++
T Consensus 446 vgS~~GdIRLYdri~~~AKT---AlPgLG~~I~hVdvtadGK--wil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 446 VGSLKGDIRLYDRIGRRAKT---ALPGLGDAIKHVDVTADGK--WILATC-KTYLLLIDT 499 (644)
T ss_pred EeecCCcEEeehhhhhhhhh---cccccCCceeeEEeeccCc--EEEEec-ccEEEEEEE
Confidence 47888999999963221122 4677788999999999999 554433 445555544
No 283
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.55 E-value=0.13 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.0
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
-.+..+.|+|.++ +++.|+.|+.+++.+.
T Consensus 211 lG~k~v~wsP~~q--flavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQ--FLAVGSYDQMLRVLNH 239 (447)
T ss_pred cceeEEEeccccc--eEEeeccchhhhhhce
Confidence 4688999999999 9999999998887554
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.46 E-value=0.39 Score=26.06 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=37.1
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
+.|-++|..+.+... .+.. ...+..++++|+++..++.+...++.+.+.|..+++
T Consensus 279 ~~V~ViD~~t~kvi~---~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 279 RFLFVVDAKTGKRLR---KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CEEEEEECCCCeEEE---EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 357778877655333 2321 346789999999884144455578889999987764
No 285
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.46 E-value=0.37 Score=25.69 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=33.6
Q ss_pred cCeEEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEe-cCCCcEEEEEC
Q 039404 5 RHIVQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-GDDKTIKVWDA 60 (65)
Q Consensus 5 ~~~i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~~i~~w~~ 60 (65)
...|.+|++.. ...+..+.........-+.+.++|++. +++.+ ..++.|.+|++
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~--~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR--YLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS--EEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC--EEEEEecCCCeEEEEEE
Confidence 35678888832 222443334443344468999999999 56554 56778988865
No 286
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.011 Score=32.76 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=41.5
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC-CCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD-DKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-~~~i~~w~~~~ 62 (65)
++.||.++.|--..-.....+..+..|.+.+..++.+.++- ++.|.+. |..++++|+.+
T Consensus 26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEeec
Confidence 45677777776433122333334667788888888888888 8888676 99999998865
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.97 E-value=0.84 Score=27.97 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=23.3
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
...|.+++|+|++. .++....++++.+.+
T Consensus 120 d~GI~a~~WSPD~E--lla~vT~~~~l~~mt 148 (928)
T PF04762_consen 120 DSGILAASWSPDEE--LLALVTGEGNLLLMT 148 (928)
T ss_pred cCcEEEEEECCCcC--EEEEEeCCCEEEEEe
Confidence 46799999999999 777777777777763
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.18 Score=30.28 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=40.4
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecC---CCCcEEEEEecCCCcEEEEECCCCC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.-.|.|-+||...+.... .+..+.+++..++|-+ +... +++.-....++.+|+..+|+
T Consensus 86 D~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred cccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCc
Confidence 345778899986544333 4666778888887764 3323 66677778899999988875
No 289
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.76 E-value=0.63 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=24.0
Q ss_pred cccccEeEEEecCCCCcEEEEEec-CC--CcEEEEECCCCC
Q 039404 27 AHVGGVNDIAFSHPNKQLYVITCG-DD--KTIKVWDATNGV 64 (65)
Q Consensus 27 ~~~~~v~~~~~~~~~~~~~l~s~~-~~--~~i~~w~~~~~~ 64 (65)
.....+....|+|++. .++..+ .+ ..|.++|+.+++
T Consensus 215 ~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 215 RSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQV 253 (448)
T ss_pred cCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCC
Confidence 3445677889999998 555432 23 357788887654
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.11 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.6
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+..+...|+.++|+|.... ++..++.+..|.+.|+++.
T Consensus 188 ~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~ 226 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETS 226 (463)
T ss_pred cccccchhhhhhccCccccc-eeeeeccCceEEEEecccc
Confidence 34567778999999998764 6778899999999998764
No 291
>PRK01029 tolB translocation protein TolB; Provisional
Probab=93.63 E-value=0.6 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=22.6
Q ss_pred ccEeEEEecCCCCcEEEEEecC-C--CcEEEEECCCCC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGD-D--KTIKVWDATNGV 64 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~-~--~~i~~w~~~~~~ 64 (65)
..+....|+|++. .++.... + ..|.+||+.+++
T Consensus 327 ~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 327 RNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred CCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCC
Confidence 4456789999999 5554432 2 468888987664
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.38 E-value=0.86 Score=26.17 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=36.0
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC----cEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK----TIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~----~i~~w~~~~~ 63 (65)
..+-+.|+.++.... .-+...+-|..++|+|.+. +++-+-.++ .|+++|..++
T Consensus 423 ~el~vididngnv~~---idkS~~~lItdf~~~~nsr--~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 423 FELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNSR--WIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eEEEEEEecCCCeeE---ecccccceeEEEEEcCCce--eEEEecCcceeeeeEEEEecCCC
Confidence 345567777765322 2334567899999999998 787766554 6777777664
No 293
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=1.2 Score=27.98 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=30.1
Q ss_pred ccccCeEEEEECCCCceEeeeEEeeccc---ccEeEEEecCCCCcEEEEEecCCCc
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHV---GGVNDIAFSHPNKQLYVITCGDDKT 54 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~~~~ 54 (65)
|-.+|.|.+||...++... .+..+. ..+..+.+..++. .+.++...|.
T Consensus 148 G~~~G~V~v~D~~~~k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs 198 (1206)
T KOG2079|consen 148 GLGDGHVTVWDMHRAKILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS 198 (1206)
T ss_pred ccCCCcEEEEEccCCccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc
Confidence 5668899999998765444 233332 2345555555666 6777766665
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.95 E-value=0.84 Score=24.85 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=32.3
Q ss_pred EEEEECCCCceEeee--EEeecccccEeEEEecCCCCcEEEE-EecCCCcEEEEECCC
Q 039404 8 VQIYPCNGGDEVRQH--LEIDAHVGGVNDIAFSHPNKQLYVI-TCGDDKTIKVWDATN 62 (65)
Q Consensus 8 i~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~~i~~w~~~~ 62 (65)
|.+|++..+. +.+. ..++ ....-+.+.|+|.++ +.. .+..+++|-+|.+..
T Consensus 169 i~~y~~~dg~-L~~~~~~~v~-~G~GPRHi~FHpn~k--~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 169 IFLYDLDDGK-LTPADPAEVK-PGAGPRHIVFHPNGK--YAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEEEcccCc-cccccccccC-CCCCcceEEEcCCCc--EEEEEeccCCEEEEEEEcC
Confidence 5567766443 2211 1122 234458999999999 544 467899999998865
No 295
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=92.91 E-value=0.34 Score=31.93 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=41.5
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+|+.||.+++|.-..+......+. -+ ++.+..+.|+..|. ....+..||.+.+|...
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt-~g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRT-AG-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeec-cC-cchhhhhhhcccCC--ceeeeccCCceeecccC
Confidence 478899999998765443332111 12 37788899999888 78888889999999765
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.86 E-value=0.82 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=16.6
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.++.++.+.++|..+|+
T Consensus 322 ~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 322 YLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred EEEEEeCCCEEEEEECCCCC
Confidence 67778889999999988775
No 297
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.76 E-value=0.3 Score=25.07 Aligned_cols=12 Identities=25% Similarity=0.803 Sum_probs=7.0
Q ss_pred cCCCcEEEEECC
Q 039404 50 GDDKTIKVWDAT 61 (65)
Q Consensus 50 ~~~~~i~~w~~~ 61 (65)
+.+..++.|++.
T Consensus 166 S~d~~~k~W~ve 177 (238)
T KOG2444|consen 166 SHDRVLKKWNVE 177 (238)
T ss_pred ccchhhhhcchh
Confidence 555666666654
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=0.46 Score=29.35 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=33.9
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.+..|....+|++|+-... +++.|+..|.|+++++.+|.
T Consensus 1096 ~frd~~~~fTc~afs~~~~--hL~vG~~~Geik~~nv~sG~ 1134 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN--HLAVGSHAGEIKIFNVSSGS 1134 (1516)
T ss_pred hhhccccceeeEEeecCCc--eEEeeeccceEEEEEccCcc
Confidence 4566777889999998888 99999999999999998874
No 299
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.35 E-value=0.51 Score=23.84 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=19.8
Q ss_pred CCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 39 HPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 39 ~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
..+. ++.+...+|.+++||+.+++
T Consensus 20 ~~~~--~Ll~iT~~G~l~vWnl~~~k 43 (219)
T PF07569_consen 20 CNGS--YLLAITSSGLLYVWNLKKGK 43 (219)
T ss_pred eCCC--EEEEEeCCCeEEEEECCCCe
Confidence 3566 88888899999999998764
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.67 E-value=1.3 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.0
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEe-c---------CCCcEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITC-G---------DDKTIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~---------~~~~i~~w~~~~~~ 64 (65)
+.|.+.|..+.+... .+..-..+ ..+ ++|+++ .++.+ . .+..|.+||..+.+
T Consensus 27 ~~v~ViD~~~~~v~g---~i~~G~~P-~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLG---MTDGGFLP-NPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred ceEEEEECCCCEEEE---EEEccCCC-cee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECccCc
Confidence 678888887654333 23322222 234 899999 45444 4 47899999998764
No 301
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.44 E-value=0.94 Score=27.37 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=31.0
Q ss_pred ccccCeEEEEECCCCc-eEeeeEEee--cccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 2 AYSRHIVQIYPCNGGD-EVRQHLEID--AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
|-++..+..||..-.. ... ....+ .......|++-...| +++.|+.+|.|+++|-
T Consensus 548 Gls~n~lfriDpR~~~~k~v-~~~~k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 548 GLSDNSLFRIDPRLSGNKLV-DSQSKQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDR 605 (794)
T ss_pred EECCCceEEeccCCCCCcee-eccccccccCCCceEEEecCCc---eEEEEeCCCcEEeecc
Confidence 3456677788865321 111 00111 122334555554443 6999999999999973
No 302
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=1.9 Score=24.89 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=28.4
Q ss_pred cccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 27 ~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
...++|.++.|+++++ .++..-.+..|.+.++.
T Consensus 64 ~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFI 96 (657)
T ss_pred cCCCceeEEEeccCcc--eEEEEecCceEEEEecC
Confidence 3457899999999999 89998899999998873
No 303
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.71 E-value=0.43 Score=16.90 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=18.4
Q ss_pred cccEeEEEecCCCCcEEEEEecCC--CcEEEE
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDD--KTIKVW 58 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w 58 (65)
...-....|+|+++. +++++..+ +...||
T Consensus 8 ~~~~~~p~~SpDGk~-i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKY-IYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSE-EEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCE-EEEEecCCCCCCcCEE
Confidence 344577899999985 55555555 655555
No 304
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=1.4 Score=25.68 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=14.6
Q ss_pred EEEEecCCCcEEEEEC
Q 039404 45 YVITCGDDKTIKVWDA 60 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~ 60 (65)
+++.++.+|.|+++|-
T Consensus 443 ~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eEEEeecCCcEEeehh
Confidence 7999999999999975
No 305
>PRK01029 tolB translocation protein TolB; Provisional
Probab=90.40 E-value=1.9 Score=23.93 Aligned_cols=53 Identities=8% Similarity=0.205 Sum_probs=31.0
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC--CCcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD--DKTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~~i~~w~~~~~ 63 (65)
..|.+||+.++... .+......+....|+|++.. ++++... ...+.++++..+
T Consensus 351 ~~I~v~dl~~g~~~----~Lt~~~~~~~~p~wSpDG~~-L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 351 RQICVYDLATGRDY----QLTTSPENKESPSWAIDSLH-LVYSAGNSNESELYLISLITK 405 (428)
T ss_pred cEEEEEECCCCCeE----EccCCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCC
Confidence 35777887765422 22222234567899999983 3334332 356777887665
No 306
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.23 E-value=0.46 Score=26.03 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=26.6
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+..|++..|+|...+ .+.-.++.|+|++-|++.
T Consensus 213 teVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 213 TEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred HHHHhhhccCHhHcc-EEEEecCCCcEEEeechh
Confidence 346788899998765 677778899999999874
No 307
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=90.16 E-value=1.9 Score=23.55 Aligned_cols=58 Identities=19% Similarity=0.422 Sum_probs=35.1
Q ss_pred cCeEEEEECCCCceEeeeEEeeccccc----------EeEEEecCCCCcEEEEEecCC-CcEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGG----------VNDIAFSHPNKQLYVITCGDD-KTIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~~~~ 64 (65)
.+.|.++.++....+........|.+. +....+.|++. +++++... -.|.++++..|.
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEcccCc
Confidence 356777777543222222122233333 67889999999 88876543 477888887653
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.79 E-value=1.5 Score=21.68 Aligned_cols=57 Identities=9% Similarity=0.010 Sum_probs=30.9
Q ss_pred ccCeEEEEECCCCceEeeeEEee--ccc-ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEID--AHV-GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.+..+|..++.......... ... .......+ .+. .++.+..++.+..+|.++|+
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGD--RLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETT--EEEEEETCSEEEEEETTTTE
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceE--ecC--EEEEEeccCcEEEEecCCCc
Confidence 45677788877766433211111 011 01112222 255 56777778899999988874
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=1.8 Score=26.25 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=30.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCC-----CCcEEEEEecCCCcEEE
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHP-----NKQLYVITCGDDKTIKV 57 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~~~~~i~~ 57 (65)
+|+.||.+.|..+.+..... .+ .-..++..++++|+ .. .+++|+..| +.+
T Consensus 88 sCS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL 142 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVL 142 (846)
T ss_pred EecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEE
Confidence 36778887777765543222 11 22456788888886 33 567777766 444
No 310
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=89.49 E-value=1 Score=26.25 Aligned_cols=32 Identities=34% Similarity=0.715 Sum_probs=25.2
Q ss_pred cEeEEEecCCCCcEEEEEecC-----------CCcEEEEECCCCC
Q 039404 31 GVNDIAFSHPNKQLYVITCGD-----------DKTIKVWDATNGV 64 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~-----------~~~i~~w~~~~~~ 64 (65)
.|..+.|+|... +|.+-+. ...+++||+.+|.
T Consensus 251 ~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 251 GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQLIIWDIATGL 293 (698)
T ss_pred CceeeecCCccc--eEEEecCCccccCcccCCCceEEEEEccccc
Confidence 367899999998 8887432 2589999999985
No 311
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.16 E-value=1.7 Score=26.46 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=34.7
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..+|.|.+|=+.++.... .+.-....+.|.+++|+.++. .+.-...||.|.+=.+.
T Consensus 90 Dt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeec
Confidence 345667777665543211 111122346788999999998 77777778877664443
No 312
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.95 E-value=1.9 Score=21.83 Aligned_cols=56 Identities=7% Similarity=0.143 Sum_probs=33.0
Q ss_pred cccCeEEEEECCCCceEeee---E-Eee-------cccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 3 YSRHIVQIYPCNGGDEVRQH---L-EID-------AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~---~-~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..+|.+++||+.+++...+. . .+. .....|..+.++..|. .+++- .++..+.|+..
T Consensus 29 T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 29 TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTL-SNGDSYSYSPD 95 (219)
T ss_pred eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEE-eCCCEEEeccc
Confidence 35789999999876532211 0 111 2345677788887777 44443 34556666543
No 313
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.68 E-value=2.9 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.258 Sum_probs=26.2
Q ss_pred cccEeEEEecCCC---CcEEEEEecCCCcEEEEECCCC
Q 039404 29 VGGVNDIAFSHPN---KQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 29 ~~~v~~~~~~~~~---~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
...|..+.|+|.+ . +++.=..|+.+++||+...
T Consensus 146 ~~~i~qv~WhP~s~~~~--~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDS--HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCC--eEEEEecCCEEEEEecCCC
Confidence 4568899999974 5 7777778999999998643
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=0.73 Score=26.15 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.5
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
....++.|+|++. .+.+-+.|..|+++++++|+
T Consensus 202 t~pts~Efsp~g~--qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 202 TEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cCccceEEccccC--cccccCcccEEEEEEeccch
Confidence 4457899999999 78888899999999999875
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.25 E-value=2.9 Score=22.94 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=31.7
Q ss_pred EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE-ecCCCcEEEEECCCCC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT-CGDDKTIKVWDATNGV 64 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~~i~~w~~~~~~ 64 (65)
|=++|+.+++... .+.. ..++.+++.+.+.++ +|++ ...++.+.++|..+|+
T Consensus 271 VWv~D~~t~krv~---Ri~l-~~~~~Si~Vsqd~~P-~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 271 VWVYDLKTHKRVA---RIPL-EHPIDSIAVSQDDKP-LLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEETTTTEEEE---EEEE-EEEESEEEEESSSS--EEEEEETTTTEEEEEETTT--
T ss_pred EEEEECCCCeEEE---EEeC-CCccceEEEccCCCc-EEEEEcCCCCeEEEEeCcCCc
Confidence 4455776665433 2321 124668888887775 5554 3567899999999875
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.81 E-value=0.49 Score=29.26 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=36.8
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC-CcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD-KTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~~i~~w~~~ 61 (65)
+|...|.|++|...++.... ...+|.+.++.+.=+.++.. .+.+++.. ....+|+..
T Consensus 1118 vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred eeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHhccc
Confidence 36678899999998775333 35678888888777767773 33333322 355667654
No 317
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=87.36 E-value=4.3 Score=23.98 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=28.6
Q ss_pred CeEEEEECCCCceEeeeEEeecccccE-eEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGV-NDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
..+.|||+.++........+++ ...+ .-+.|+.+++ +++--.. ..|.+++
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~-~~~~WP~frWS~DdK--y~Arm~~-~sisIyE 332 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKS-PYLKWPIFRWSHDDK--YFARMTG-NSISIYE 332 (698)
T ss_pred ceEEEEEccccchhcceeccCC-CccccceEEeccCCc--eeEEecc-ceEEEEe
Confidence 5789999998753331112221 1222 4578898888 7766443 3455543
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.14 E-value=3.6 Score=22.92 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=29.8
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCC--CcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDD--KTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~~i~~w~~~~~ 63 (65)
..|.++|+.++.... +....+......|+|++.. .+++...+ ..+.++++.++
T Consensus 213 ~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 213 PTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEECCCC
Confidence 356667766553221 2223344456789999984 44444433 46666677655
No 319
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.11 E-value=5.6 Score=25.08 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.0
Q ss_pred EeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
...++++|++.. ++++-..++.|+.||+.++
T Consensus 742 P~GIavspdG~~-LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 742 PSGISLSPDLKE-LYIADSESSSIRALDLKTG 772 (1057)
T ss_pred ccEEEEeCCCCE-EEEEECCCCeEEEEECCCC
Confidence 356899999874 4445566789999998754
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.91 E-value=4.8 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=34.0
Q ss_pred CeEEEEECCCC--ceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 6 HIVQIYPCNGG--DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 6 ~~i~i~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+.|.+.|..+. ........+. -......+.++|+++. .+.++..+.++.+.|+..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEeCCCCCcEEEEEChh
Confidence 45777787651 0011111222 2334578999999994 444556789999999875
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.73 E-value=4.1 Score=23.07 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=26.6
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
++.|.+||.+++.... .+.. ..|..+.|++++. +++-.+.+ .+.+.+.
T Consensus 125 ~~~i~~yDw~~~~~i~---~i~v--~~vk~V~Ws~~g~--~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 125 SDFICFYDWETGKLIR---RIDV--SAVKYVIWSDDGE--LVALVTKD-SIYILKY 172 (443)
T ss_dssp TTEEEEE-TTT--EEE---EESS---E-EEEEE-TTSS--EEEEE-S--SEEEEEE
T ss_pred CCCEEEEEhhHcceee---EEec--CCCcEEEEECCCC--EEEEEeCC-eEEEEEe
Confidence 4468999998764333 3432 2378999999988 77776644 5555543
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.36 E-value=4.2 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=19.6
Q ss_pred eEEEecCCCCcEEEEEecCCCcEEE--EECCCC
Q 039404 33 NDIAFSHPNKQLYVITCGDDKTIKV--WDATNG 63 (65)
Q Consensus 33 ~~~~~~~~~~~~~l~s~~~~~~i~~--w~~~~~ 63 (65)
..-+|+|+++. ++++...|+...+ .|+..+
T Consensus 241 ~~P~fspDG~~-l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 241 GAPAFSPDGSK-LAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred CCccCCCCCCE-EEEEECCCCCccEEEEcCCCC
Confidence 45689999985 5666666665444 466543
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.98 E-value=2.4 Score=23.26 Aligned_cols=32 Identities=31% Similarity=0.706 Sum_probs=24.5
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.|..+.|++.+. ++++. .-.++++||++..
T Consensus 280 vsSISD~kFs~ngr--yIlsR-dyltvkiwDvnm~ 311 (460)
T COG5170 280 VSSISDFKFSDNGR--YILSR-DYLTVKIWDVNMA 311 (460)
T ss_pred hhhhcceEEcCCCc--EEEEe-ccceEEEEecccc
Confidence 35677899999998 77774 3468999998754
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.77 E-value=0.27 Score=28.89 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=35.0
Q ss_pred ccCeEEEEECCCCc--eEeeeEEeec-ccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 4 SRHIVQIYPCNGGD--EVRQHLEIDA-HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 4 ~~~~i~i~~~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|..++|||+.+.. .... ..+.+ .......++|-.+.+ ++.+|.....+.++|++
T Consensus 127 nds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLR 184 (783)
T ss_pred ccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhh
Confidence 35568899987652 1111 12222 334456778887777 78888777788888887
No 325
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.48 E-value=5.8 Score=23.68 Aligned_cols=51 Identities=10% Similarity=0.265 Sum_probs=34.6
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEec--CCCCcEEEEEecCCCcEEEEE
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~~~~i~~w~ 59 (65)
...+.|||...+. ..-...+ ...+.|..++|. |+++ .+.+.+..+.|.++.
T Consensus 50 ~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~q--siLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 50 RSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQ--SILAVGFPHHVLLYT 102 (631)
T ss_pred CCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCC--EEEEEEcCcEEEEEE
Confidence 3468899987654 3322233 345778888885 5677 788888888888873
No 326
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.15 E-value=5 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=29.4
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+......+..+..+|.+. +.+....-|.|.++|+.++
T Consensus 302 ~l~D~~R~~~~i~~sP~~~--laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGR--LAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eeccCCceEEEEEECCCCC--EEEEEcCCCcEEEEECCCC
Confidence 3444455678899999988 7777777799999999876
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.12 E-value=4.3 Score=21.88 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+.+.+||+.++.... +......+....|+|++. .++-. .++.|.+.+..++
T Consensus 23 ~~y~i~d~~~~~~~~----l~~~~~~~~~~~~sP~g~--~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 23 GDYYIYDIETGEITP----LTPPPPKLQDAKWSPDGK--YIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEETTTTEEEE----SS-EETTBSEEEE-SSST--EEEEE-ETTEEEEESSTTS
T ss_pred eeEEEEecCCCceEE----CcCCccccccceeecCCC--eeEEE-ecCceEEEECCCC
Confidence 456788988764222 222245678899999998 55554 3567777766543
No 328
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=84.69 E-value=3.2 Score=23.05 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=25.8
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
..-+.++.|...|. +|++|..+|.+.++.-
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r 54 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFER 54 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeec
Confidence 45678999999999 9999999999988854
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.69 E-value=1.7 Score=25.95 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=36.3
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|++-|.+.+|+-..+.... ....+..+.+.....++... +++.++..+.|.++.+..
T Consensus 51 GsS~G~lyl~~R~~~~~~~--~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRK--LKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ecccceEEEEecCchhhhc--ccccCccceEEEEEecchhH--hhhhhcCCceEEeehhhc
Confidence 5666788888876543222 12223334455667777777 788888888888876654
No 330
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.64 E-value=1.4 Score=15.69 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=12.9
Q ss_pred EEEecCCCcEEEEECCCCC
Q 039404 46 VITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 46 l~s~~~~~~i~~w~~~~~~ 64 (65)
++.+..++.+.-.|.++|+
T Consensus 3 v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp EEEETTTSEEEEEETTTTS
T ss_pred EEEeCCCCEEEEEECCCCC
Confidence 4444677777777777764
No 331
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=84.57 E-value=1.7 Score=26.62 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=38.0
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+.+-|+.++.........+..+.+|+.+..+..+. +++....+.-+-+||+++.
T Consensus 499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~--yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGR--YLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred eEEEEEcccccccccccCCCCCcCcceeeeecccCc--eEEEEecccchHHHhhccc
Confidence 345667766643322112234567899999999998 8998888888899988653
No 332
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.44 E-value=4.5 Score=21.51 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=33.1
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEec------CCCcEEEEECCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG------DDKTIKVWDATNG 63 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~~~~i~~w~~~~~ 63 (65)
..|++||..+.....+ -.+-.+.|..+.|..... +++.|. ....+..||..+.
T Consensus 16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCC
Confidence 4699999877643331 222356789999975555 666653 3456667776553
No 333
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=84.44 E-value=1.2 Score=14.91 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=13.3
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.++.++.+...|.++|+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEEEEcCCCEEEEEEcccCc
Confidence 35555667777777777664
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=6.7 Score=24.13 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=17.7
Q ss_pred CCCCcEEEEEecCCCcEEEEECCCC
Q 039404 39 HPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 39 ~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+|. ++++|+.||++.+-.+-+.
T Consensus 81 ~~Ge--y~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 81 LEGE--YVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred cCCc--eEEEecCCCcEEEeeccCC
Confidence 3577 9999999999888765443
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.06 E-value=10 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=22.4
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
...|.+++|+|++. .++-.....++.+.+
T Consensus 109 d~GI~aaswS~Dee--~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 109 DNGISAASWSPDEE--LLALITGRQTLLFMT 137 (1265)
T ss_pred cCceEEEeecCCCc--EEEEEeCCcEEEEEe
Confidence 46789999999999 777766667776653
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.81 E-value=6.3 Score=21.98 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=32.3
Q ss_pred eEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 7 IVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 7 ~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.|.+|+..... ... ..+.. +.+.++.|..++. |+....||.++++|+.
T Consensus 62 ~I~iys~sG~l-l~~-i~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSS-IPWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCE-eEE-EEECC--CCEEEEEECCCCe---EEEEEcCCEEEEEeCC
Confidence 47888875432 221 12332 7899999987655 5566789999999874
No 337
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=82.80 E-value=7.5 Score=22.83 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=25.4
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.++|.++.|++.+.+-.++-|-+...+.++|++.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 6899999999999851233356778888888764
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=82.66 E-value=6.4 Score=21.96 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=27.8
Q ss_pred eeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 20 RQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 20 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
.+...+....++|.+++.+ +-. +++.+..+|.+.+.|+|..
T Consensus 77 ~P~~l~~~~~g~vtal~~S-~iG--Fvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS-DIG--FVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp EEEEEE---S-SEEEEEE--BTS--EEEEEETTSEEEEEETTTT
T ss_pred CchhheeccCCcEeEEecC-CCc--EEEEEecCCcEEEEECCCC
Confidence 3333445557889999987 444 7999999999999999754
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.04 E-value=6.1 Score=21.29 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=19.0
Q ss_pred EecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 36 AFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 36 ~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
...+++. .+..++.|+.....|+++
T Consensus 100 ~~d~~~g--lIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 100 QCDFDGG--LIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EEcCCCc--eEEEecCCCcEEEecccc
Confidence 3345677 888899999988888765
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.55 E-value=4.9 Score=19.87 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=31.9
Q ss_pred cCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 5 RHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 5 ~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++.|..+|..+++..-.. .+............ +.+. .++.++.++.+..+|..+|+
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSE
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCC
Confidence 578889999777644321 22111111121122 2345 56666788889889887774
No 341
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.23 E-value=5 Score=23.70 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=33.9
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
+++..|.|++||--...... .+++-...|..+..+..+. ++++.| ..++.+.|++
T Consensus 578 ~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta~Gk--~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 578 AASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTANGK--HILATC-KNYLLLTDVP 632 (776)
T ss_pred EecCCCceeeehhhcchhhh---cCcccccceeeeEeecCCc--EEEEee-cceEEEEecc
Confidence 35677889999853322122 3555567788898888888 554433 3455566553
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=80.14 E-value=10 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.299 Sum_probs=25.9
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
.+.+..+++++.+. .++.+..++.|.+|.-
T Consensus 312 ~s~i~~fDiSsn~~--alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 312 GSGISAFDISSNGD--ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCcceeEEecCCCc--eEEEecccCcEeeecC
Confidence 45588999999998 8999999999999963
No 343
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=79.96 E-value=7.5 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=11.7
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.++.++.+..+|..+|+
T Consensus 107 ~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEEEcCCCEEEEEECCCCc
Confidence 44455556666666665553
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=78.58 E-value=5.2 Score=18.35 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=27.1
Q ss_pred CccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 1 VAYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 1 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
+|+.|..|++|+-.. ... .+.. ++.+..+.-... . .++.+..+|+|-+++
T Consensus 20 vGs~D~~IRvf~~~e--~~~---Ei~e-~~~v~~L~~~~~-~--~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 20 VGSDDFEIRVFKGDE--IVA---EITE-TDKVTSLCSLGG-G--RFAYALANGTVGVYD 69 (111)
T ss_pred EecCCcEEEEEeCCc--EEE---EEec-ccceEEEEEcCC-C--EEEEEecCCEEEEEe
Confidence 467778888877542 111 2322 345566655544 3 455556666665543
No 345
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=78.32 E-value=8.6 Score=20.72 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=36.7
Q ss_pred ccCeEEEEECCCC-ceEeeeEEeecccccEeEEEecCCCCcEEEEEec-CCCcEEEEECCC
Q 039404 4 SRHIVQIYPCNGG-DEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDATN 62 (65)
Q Consensus 4 ~~~~i~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~~ 62 (65)
.++.|..|.+... ..+..+.........-..++++|++. +++.+. .++.+.++++..
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccC
Confidence 3567777776653 33444434433334456789999999 666654 688999988764
No 346
>PRK04043 tolB translocation protein TolB; Provisional
Probab=78.07 E-value=9.9 Score=21.32 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV 64 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~ 64 (65)
..|.++++.++. .. .+..+........|+|++.. ++++....+ .|.+.++.+++
T Consensus 257 ~~Iy~~dl~~g~-~~---~LT~~~~~d~~p~~SPDG~~-I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 257 PDIYLYDTNTKT-LT---QITNYPGIDVNGNFVEDDKR-IVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cEEEEEECCCCc-EE---EcccCCCccCccEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 456666765543 22 22222222234579999985 444443333 56666776653
No 347
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.78 E-value=2.7 Score=14.74 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=5.9
Q ss_pred CCCcEEEEECCC
Q 039404 51 DDKTIKVWDATN 62 (65)
Q Consensus 51 ~~~~i~~w~~~~ 62 (65)
.++.|.++|..+
T Consensus 12 ~~~~v~~id~~~ 23 (42)
T TIGR02276 12 GSNTVSVIDTAT 23 (42)
T ss_pred CCCEEEEEECCC
Confidence 344555555543
No 348
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.75 E-value=5.3 Score=17.47 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=26.9
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC--CCcEEEE
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD--DKTIKVW 58 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~~i~~w 58 (65)
.+|.+..||..++........+ ...+++++++++. .++.+.. ....+.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L----~fpNGVals~d~~--~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL----YFPNGVALSPDES--FVLVAETGRYRILRYW 85 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE----SSEEEEEE-TTSS--EEEEEEGGGTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC----CccCeEEEcCCCC--EEEEEeccCceEEEEE
Confidence 4567778888776432211122 2458899999998 6665432 3344444
No 349
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=74.29 E-value=9.9 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=22.8
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.+.|.|.+|.++++. ++.+.+..-.-++||-.
T Consensus 155 ~G~IhCACWT~DG~R-LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWTKDGQR-LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEecCcCCE-EEEEeCCeEEEEEecCc
Confidence 467899999999985 44455556666778753
No 350
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.72 E-value=12 Score=20.31 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=25.6
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
..+-+++++.++.. ..+|+=..+.+.+||..+++
T Consensus 217 ~Y~gSIa~~~~g~~-ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 217 GYIGSIAADRDGRL-IAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CceEEEEEeCCCCE-EEEECCCCCEEEEEECCCCC
Confidence 45778999998883 44555567899999988874
No 351
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=73.57 E-value=3.1 Score=13.83 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=7.4
Q ss_pred CCCcEEEEECC
Q 039404 51 DDKTIKVWDAT 61 (65)
Q Consensus 51 ~~~~i~~w~~~ 61 (65)
+|..|+-||+-
T Consensus 13 sdksi~hwdf~ 23 (28)
T PRK14751 13 SDKSIYHWDFY 23 (28)
T ss_pred CcCceeeeeeh
Confidence 35677888764
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.77 E-value=16 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.1
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
+++.+..++.++.+|.++|+
T Consensus 474 lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred EEEEECCCCeEEEEECCCCC
Confidence 66677889999999999986
No 353
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=22 Score=22.43 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=32.6
Q ss_pred eEEEEECCCCc--e-Eeee---EEe----ecccccEeEEEecCCCCcEEEEEecCCCcEEEE
Q 039404 7 IVQIYPCNGGD--E-VRQH---LEI----DAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 7 ~i~i~~~~~~~--~-~~~~---~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
.+++|+++... . +..+ +.+ +....++.+++.+.+-. .++.|-.+|.|...
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICY 152 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEE
Confidence 68999986431 1 1111 111 12345678888888877 88888899988876
No 354
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.40 E-value=16 Score=23.08 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=23.1
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
.+.+++-+|.+. -+.++..|+.++++++..
T Consensus 16 ~~~aiqshp~~~--s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQ--SFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCc--eEEEEecCCcEEEEeecc
Confidence 456777778777 788888899888887754
No 355
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.10 E-value=13 Score=22.13 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=23.1
Q ss_pred EeEEEecCCC--CcEEEEEecCCCcEEEEECCCC
Q 039404 32 VNDIAFSHPN--KQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 32 v~~~~~~~~~--~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+..++|+|+. .. ++..-..|..++++++...
T Consensus 168 l~Qa~WHP~S~~D~-hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 168 LKQAAWHPSSILDP-HLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeccccCCccCCc-eEEEEecCcEEEEEecCCc
Confidence 4667899976 33 6666678999999998653
No 356
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.47 E-value=15 Score=19.98 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=30.4
Q ss_pred EEEEECCCCceEeeeEEeecccccE--eEEEecCCCCcEEEEEecCC-----CcEEEEECC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGV--NDIAFSHPNKQLYVITCGDD-----KTIKVWDAT 61 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~~-----~~i~~w~~~ 61 (65)
..+||..++.... .+....++- =.-.|++++. +|++...| |.|-+||..
T Consensus 30 ~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 30 ALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred EEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc
Confidence 4578887765433 222222211 1357899999 78876544 789999987
No 357
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.69 E-value=11 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.9
Q ss_pred cCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 38 SHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 38 ~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
..++. .++++..|+.+.+||+..+
T Consensus 243 ~~~~~--~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SRDGS--HFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccCCc--eEEEEEecCCEEeeecCCC
Confidence 55677 8999999999999999876
No 358
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.29 E-value=7.2 Score=24.71 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=18.7
Q ss_pred EecCCCCcEEEEEecCCCcEEEEEC
Q 039404 36 AFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 36 ~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
..+|+|. .++.++.||.+++|.+
T Consensus 242 ~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 242 SLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeCCCCc--EEEEeecCCccceeee
Confidence 4678888 8888888998888865
No 359
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=67.17 E-value=23 Score=21.74 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.6
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+...++|+|.... .++.....|...+|++
T Consensus 147 ~~aDv~FnP~~~~-q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQR-QFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccc-eEEEEeccCcEEEEEe
Confidence 4567999997665 7888899999999999
No 360
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.61 E-value=30 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.365 Sum_probs=22.9
Q ss_pred cccEeEEEecCCCCcEEEEE---ecCCCcEEEEECCC
Q 039404 29 VGGVNDIAFSHPNKQLYVIT---CGDDKTIKVWDATN 62 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s---~~~~~~i~~w~~~~ 62 (65)
...+..++|+..+. .|+. ......|.+|-+.+
T Consensus 289 e~~ve~L~Wns~sd--iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 289 EKEVEELAWNSNSD--ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccchheeeecCCCC--ceeeeecccccceEEEEEecC
Confidence 34478899998888 6666 44455699997654
No 361
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=64.92 E-value=15 Score=17.82 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=23.2
Q ss_pred cEeEEEecCCC-----CcEEEEEecCCCcEEEEECC
Q 039404 31 GVNDIAFSHPN-----KQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 31 ~v~~~~~~~~~-----~~~~l~s~~~~~~i~~w~~~ 61 (65)
.+..++|+|.| .. +|+....++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rC-lLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRC-LLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCce-EEEEEcCCCeEEEEecC
Confidence 68899999953 23 67777889999999654
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.79 E-value=20 Score=19.20 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=21.4
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSH 39 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 39 (65)
+.+.|...|..+++.+. .++-.+..+.+++|--
T Consensus 231 ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGG 263 (310)
T ss_pred cCcEEEEECCCCCcEEE---EEEcCCCceEEEEecC
Confidence 44567777877776444 3443467788888853
No 363
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.52 E-value=22 Score=19.55 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=15.1
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.++.++.+...|..+|+
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEEEeCCCEEEEEECCCCC
Confidence 56667778888888887764
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=62.83 E-value=20 Score=18.43 Aligned_cols=53 Identities=8% Similarity=0.204 Sum_probs=29.9
Q ss_pred ccccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 2 AYSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 2 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
|..+| +.+++......... .. +...|..+...++-. .++.- .|+.+.++++..
T Consensus 13 Gt~~G-l~~~~~~~~~~~~~--i~--~~~~I~ql~vl~~~~--~llvL-sd~~l~~~~L~~ 65 (275)
T PF00780_consen 13 GTEDG-LYVYDLSDPSKPTR--IL--KLSSITQLSVLPELN--LLLVL-SDGQLYVYDLDS 65 (275)
T ss_pred EECCC-EEEEEecCCcccee--Ee--ecceEEEEEEecccC--EEEEE-cCCccEEEEchh
Confidence 44556 77888732211211 11 223388888877766 44443 358888888754
No 365
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.75 E-value=25 Score=19.61 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred EeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
+..+...+... .+++...++.|.+|++..
T Consensus 192 I~~v~~d~~r~--~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRR--LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTT--EEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcC--EEEEEeCCCcEEEEEEeC
Confidence 77888877776 888889999999999864
No 366
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=62.28 E-value=7.9 Score=13.67 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.0
Q ss_pred EEEEecCCCcEEEEECCC
Q 039404 45 YVITCGDDKTIKVWDATN 62 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~ 62 (65)
.++.++.|+.+..+|.++
T Consensus 23 ~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEE-TTSEEEEEETT-
T ss_pred EEEEEcCCCEEEEEeCCC
Confidence 677778899999888753
No 367
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=61.81 E-value=13 Score=21.10 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=16.5
Q ss_pred EEEEecCCCcEEEEECCC
Q 039404 45 YVITCGDDKTIKVWDATN 62 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~ 62 (65)
.|++++.|..+.+||++.
T Consensus 343 ~lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 343 KLVTGGTDNHLVLVDLRP 360 (477)
T ss_pred eEecCCccceEEEEeccc
Confidence 789999999999999975
No 368
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.18 E-value=42 Score=21.36 Aligned_cols=32 Identities=16% Similarity=0.429 Sum_probs=23.8
Q ss_pred ccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 28 HVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 28 ~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
....|..+.|++++. .|+....|. |.+|...+
T Consensus 303 ~~~~v~~l~Wn~ds~--iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 303 EEEKVIELAWNSDSE--ILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred CCceeeEEEECCCCC--EEEEEecCC-ceEEEeeC
Confidence 345789999999998 777765444 99996544
No 369
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=59.70 E-value=24 Score=18.31 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=29.0
Q ss_pred ccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecC
Q 039404 4 SRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGD 51 (65)
Q Consensus 4 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 51 (65)
....|.+|++.... ..+...|.. -+.|..+.++..|. ++++-..
T Consensus 36 ~g~~Vev~~l~~~~-~~~~~~F~T-v~~V~~l~y~~~GD--YlvTlE~ 79 (215)
T PF14761_consen 36 SGCKVEVYDLEQEE-CPLLCTFST-VGRVLQLVYSEAGD--YLVTLEE 79 (215)
T ss_pred CCCEEEEEEcccCC-CceeEEEcc-hhheeEEEeccccc--eEEEEEe
Confidence 34568889987322 222334543 37789999999998 8888543
No 370
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.48 E-value=8.2 Score=12.99 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=16.0
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEE
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
.|.+++.. .. +++.+.+.+.+++|
T Consensus 3 ~i~aia~g--~~--~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAG--DS--WVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEcc--CC--EEEEEeCCCeEEec
Confidence 35566653 33 67777778888886
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.33 E-value=30 Score=19.47 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.5
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEE
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWD 59 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~ 59 (65)
+++..++.||.++ +++.-..++.+.+.+
T Consensus 217 ~~i~~iavSpng~--~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGK--FIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCC--EEEEEECCCCEEEEE
Confidence 5789999999999 888777778876654
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=59.16 E-value=28 Score=18.93 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=19.5
Q ss_pred cccEeEEEecCCCCcEEEEEec-CCCcEEEEECC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCG-DDKTIKVWDAT 61 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~-~~~~i~~w~~~ 61 (65)
-...+.++|+|+++ .++.+. ..+.+.-+++.
T Consensus 162 ~~~~NGla~SpDg~--tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 162 LTIPNGLAFSPDGK--TLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEecCceEECCCCC--EEEEEeCCCCeEEEEecC
Confidence 33457899999998 454443 34566555553
No 373
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=59.02 E-value=15 Score=16.32 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=12.7
Q ss_pred EEEEEecCCCcEEEEECCCC
Q 039404 44 LYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 44 ~~l~s~~~~~~i~~w~~~~~ 63 (65)
+.++....|++|..+.+..|
T Consensus 75 i~LAiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 75 ILLAIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEEEE-TTS-EEEEEEE--
T ss_pred EEEEEEcCCCCEEEEEEeCC
Confidence 36777889999988877665
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=54.70 E-value=35 Score=18.82 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=20.5
Q ss_pred eEEEecCCCCcEEEE-EecCC----CcEEEEECCCCC
Q 039404 33 NDIAFSHPNKQLYVI-TCGDD----KTIKVWDATNGV 64 (65)
Q Consensus 33 ~~~~~~~~~~~~~l~-s~~~~----~~i~~w~~~~~~ 64 (65)
...+++|++. +++ +-+.. ..+++.|+.+|+
T Consensus 127 ~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~ 161 (414)
T PF02897_consen 127 GGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGK 161 (414)
T ss_dssp EEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTE
T ss_pred eeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCc
Confidence 3678899998 444 32222 469999998874
No 375
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=54.48 E-value=19 Score=15.65 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred cEeEEEecCCCCcEEEEE-ecCCCcEEEEECC
Q 039404 31 GVNDIAFSHPNKQLYVIT-CGDDKTIKVWDAT 61 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s-~~~~~~i~~w~~~ 61 (65)
..+++.++|+++ .+.. ....+.|.++..+
T Consensus 55 ~aNGI~~s~~~k--~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKK--YLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCC--EEEEEeccCCeEEEEEec
Confidence 347889999988 4444 4567889888764
No 376
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=54.29 E-value=24 Score=17.91 Aligned_cols=19 Identities=5% Similarity=0.065 Sum_probs=13.8
Q ss_pred EeecccccEeEEEecCCCC
Q 039404 24 EIDAHVGGVNDIAFSHPNK 42 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~ 42 (65)
.++....++.+++|+|++-
T Consensus 157 ai~h~~~pi~gvQFHPESi 175 (191)
T COG0512 157 AVRHKKLPIYGVQFHPESI 175 (191)
T ss_pred EEeeCCCCEEEEecCCccc
Confidence 4444567899999999754
No 377
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=53.92 E-value=46 Score=19.84 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=24.3
Q ss_pred cccccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 27 ~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
...++|..++|.|.+.+--+++|-.+..+.++|++.
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 446889999999988841233345666777777654
No 378
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=53.81 E-value=18 Score=15.14 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=6.3
Q ss_pred CcEEEEECCCC
Q 039404 53 KTIKVWDATNG 63 (65)
Q Consensus 53 ~~i~~w~~~~~ 63 (65)
.+|+++|..+|
T Consensus 27 mtvrl~d~~sg 37 (69)
T PF07865_consen 27 MTVRLFDPASG 37 (69)
T ss_pred EEEEEecCCCC
Confidence 35666665554
No 379
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=53.51 E-value=25 Score=16.72 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=13.3
Q ss_pred cccCeEEEEECCCCc-eEeeeEEeecccccEeEEEecC
Q 039404 3 YSRHIVQIYPCNGGD-EVRQHLEIDAHVGGVNDIAFSH 39 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 39 (65)
.-|+.|+.|.+.... .......+. ......++++.|
T Consensus 30 KGD~~ir~yEv~~~~p~l~~l~~~~-s~~~~~G~~~lP 66 (136)
T PF08954_consen 30 KGDGNIRYYEVSDESPYLHYLSEYR-SPEPQKGFAFLP 66 (136)
T ss_dssp TT-S-EEEEEE-SSTTSEEEEEEE---SS--SEEEE--
T ss_pred ccCcEEEEEEEcCCCCceEEccccc-cCCCeEeeEecC
Confidence 346677777775542 222222232 234445666655
No 380
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=52.63 E-value=21 Score=15.49 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=18.5
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEE
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKV 57 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~ 57 (65)
...|..++|.|-.. .+..|...|.-.+
T Consensus 9 ~~~v~~~~F~PfED--vLgvGh~~G~sSi 35 (80)
T PF08149_consen 9 GSPVESLRFCPFED--VLGVGHSKGFSSI 35 (80)
T ss_pred CCeeeeeEEechHH--eeEeeccCceeEE
Confidence 45678888888777 6777666654443
No 381
>smart00284 OLF Olfactomedin-like domains.
Probab=52.42 E-value=35 Score=18.15 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=29.4
Q ss_pred EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
...||..++........+...-..+..++++|..+ .|.+ =.++.+..++++
T Consensus 202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~--~LY~-wdng~~l~Y~v~ 252 (255)
T smart00284 202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDR--KLYA-WNNGHLVHYDIA 252 (255)
T ss_pred EEEEECCCCccceeeeeeccccccceeceeCCCCC--eEEE-EeCCeEEEEEEE
Confidence 34577765443222234444455677889998887 5544 345666666654
No 382
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=51 Score=20.73 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=21.9
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.+.++.|+.+.. |++...+|++.+++..
T Consensus 85 ~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 85 ELIGMGWSDDEE---LICVQKDGTVHVYGLL 112 (829)
T ss_pred CeeeecccCCce---EEEEeccceEEEeecc
Confidence 678899986655 6667889999998764
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=50.64 E-value=46 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=15.4
Q ss_pred eEEEecCCCCcEEEEEecCCCcEEEE
Q 039404 33 NDIAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 33 ~~~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
....|+|+++. .|+++...|...++
T Consensus 354 Php~FSPDgk~-VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKW-VLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSE-EEEEE-TTSS-EEE
T ss_pred CCCccCCCCCE-EEEECCCCCCccEE
Confidence 56899999996 77787778776665
No 384
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=48.17 E-value=42 Score=17.71 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=29.6
Q ss_pred EEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 8 VQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 8 i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..+||+.++........+......+..+.++|..+ .|.. =.+|....++++
T Consensus 197 ~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk--~LY~-wd~G~~v~Y~v~ 247 (250)
T PF02191_consen 197 FYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDK--KLYA-WDNGYQVTYDVR 247 (250)
T ss_pred EEEEECCCCceeceeeeeccccCceEeeeECCCCC--eEEE-EECCeEEEEEEE
Confidence 34678776543333334444445678889998887 4444 235555555543
No 385
>PHA02713 hypothetical protein; Provisional
Probab=47.77 E-value=58 Score=19.27 Aligned_cols=52 Identities=8% Similarity=0.069 Sum_probs=25.5
Q ss_pred EEEEECCC-CceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCC--cEEEEECCCCC
Q 039404 8 VQIYPCNG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDK--TIKVWDATNGV 64 (65)
Q Consensus 8 i~i~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--~i~~w~~~~~~ 64 (65)
+..||..+ .. +.....++........+.+ ++. +.+.|+.++ .+-.+|+.+.+
T Consensus 482 ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~~--~~~--iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 482 IFRYNTNTYNG-WELITTTESRLSALHTILH--DNT--IMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEecCCCCCC-eeEccccCcccccceeEEE--CCE--EEEEeeecceeehhhcCccccc
Confidence 55677765 33 3322233322222222222 455 666777666 56666666543
No 386
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.97 E-value=15 Score=11.99 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=9.8
Q ss_pred eEEEecCCCCcEEEEEecCCCcEE
Q 039404 33 NDIAFSHPNKQLYVITCGDDKTIK 56 (65)
Q Consensus 33 ~~~~~~~~~~~~~l~s~~~~~~i~ 56 (65)
.+++..+++. ++.+=...+.|.
T Consensus 5 ~gvav~~~g~--i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGN--IYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSE--EEEEECCCTEEE
T ss_pred cEEEEeCCCC--EEEEECCCCEEE
Confidence 3455555554 444433334443
No 387
>PF13964 Kelch_6: Kelch motif
Probab=45.40 E-value=20 Score=13.20 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=5.2
Q ss_pred cEEEEECCCC
Q 039404 54 TIKVWDATNG 63 (65)
Q Consensus 54 ~i~~w~~~~~ 63 (65)
.+..+|+++.
T Consensus 29 ~v~~yd~~t~ 38 (50)
T PF13964_consen 29 DVERYDPETN 38 (50)
T ss_pred cEEEEcCCCC
Confidence 4555555543
No 388
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=43.65 E-value=51 Score=17.43 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=25.8
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
...+..++|-|... .|..-+..+.++.-|..+|.
T Consensus 26 ge~l~GID~Rpa~G--~LYgl~~~g~lYtIn~~tG~ 59 (236)
T PF14339_consen 26 GESLVGIDFRPANG--QLYGLGSTGRLYTINPATGA 59 (236)
T ss_pred CCeEEEEEeecCCC--CEEEEeCCCcEEEEECCCCe
Confidence 45678999999877 56665778888888887763
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.75 E-value=64 Score=18.00 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=26.8
Q ss_pred CeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEE
Q 039404 6 HIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVIT 48 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 48 (65)
|.|-+||...+ ...+.++..|.-.-..+.+.+++. .++.
T Consensus 140 GViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvv 178 (366)
T COG3490 140 GVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVV 178 (366)
T ss_pred ceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEE
Confidence 56778887643 444556777766667888999998 4444
No 390
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=40.82 E-value=17 Score=12.21 Aligned_cols=9 Identities=56% Similarity=0.959 Sum_probs=5.8
Q ss_pred CCcEEEEEC
Q 039404 52 DKTIKVWDA 60 (65)
Q Consensus 52 ~~~i~~w~~ 60 (65)
|.++.-||+
T Consensus 14 D~S~y~WDF 22 (28)
T PF08076_consen 14 DKSIYHWDF 22 (28)
T ss_pred ccceeehhh
Confidence 556677775
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=39.85 E-value=76 Score=18.31 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=15.7
Q ss_pred EEEEecCCCcEEEEECCC
Q 039404 45 YVITCGDDKTIKVWDATN 62 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~ 62 (65)
.++.|+..|.++++++..
T Consensus 39 ~IivGS~~G~LrIy~P~~ 56 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSG 56 (418)
T ss_pred EEEEeccccEEEEEccCC
Confidence 788999999999998754
No 392
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=38.17 E-value=1e+02 Score=19.22 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.0
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+.+.++.+..++. .+.....+|.+.+||+
T Consensus 130 ~kvv~Ik~~~~~~--~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 130 DKVVGIKFSSDGK--IIYVVLENGSIQIYDF 158 (670)
T ss_pred cceEEEEEecCCC--EEEEEEcCCcEEEEec
Confidence 4677889988888 7888889999999998
No 393
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=37.41 E-value=15 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=8.5
Q ss_pred cCCCcEEEEECCCC
Q 039404 50 GDDKTIKVWDATNG 63 (65)
Q Consensus 50 ~~~~~i~~w~~~~~ 63 (65)
..+|.+++||++..
T Consensus 149 ~~~GVVrvWDvkd~ 162 (533)
T PF00843_consen 149 GRNGVVRVWDVKDP 162 (533)
T ss_dssp -SSSEE-SEE-S-G
T ss_pred CCCCeEEEEecCCH
Confidence 56899999999764
No 394
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=36.61 E-value=20 Score=11.56 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=4.3
Q ss_pred EecCCCC
Q 039404 36 AFSHPNK 42 (65)
Q Consensus 36 ~~~~~~~ 42 (65)
.|+|++.
T Consensus 7 ~FSp~Gr 13 (23)
T PF10584_consen 7 TFSPDGR 13 (23)
T ss_dssp SBBTTSS
T ss_pred eECCCCe
Confidence 3667665
No 395
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=35.43 E-value=62 Score=16.02 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=10.5
Q ss_pred cccEeEEEecCCCC
Q 039404 29 VGGVNDIAFSHPNK 42 (65)
Q Consensus 29 ~~~v~~~~~~~~~~ 42 (65)
..++.+++|+|+..
T Consensus 160 ~~~i~gvQfHPE~~ 173 (188)
T TIGR00566 160 DLPLEGVQFHPESI 173 (188)
T ss_pred CCCEEEEEeCCCcc
Confidence 34688999999753
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.02 E-value=1.4e+02 Score=20.31 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=23.0
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
....+++|+|.+. .++.+-..|++.-+..
T Consensus 199 ~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGK--QLFIGRNNGTEVQYEP 227 (1405)
T ss_pred cceeeEEeccccc--eeeEecCCCeEEEeec
Confidence 4568999999999 6888888888776643
No 397
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=34.90 E-value=1.2e+02 Score=19.11 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=22.1
Q ss_pred ccccEeEEEecCCC--Cc--EEEEEecCCCcEEEEEC
Q 039404 28 HVGGVNDIAFSHPN--KQ--LYVITCGDDKTIKVWDA 60 (65)
Q Consensus 28 ~~~~v~~~~~~~~~--~~--~~l~s~~~~~~i~~w~~ 60 (65)
+...|.+++|-++. .. +.+++++-.|.+-+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44567888887654 11 15667778888888776
No 398
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=34.53 E-value=65 Score=15.98 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=10.8
Q ss_pred cccEeEEEecCCCC
Q 039404 29 VGGVNDIAFSHPNK 42 (65)
Q Consensus 29 ~~~v~~~~~~~~~~ 42 (65)
..++.+++|+|+..
T Consensus 164 ~~pi~gvQfHPE~~ 177 (193)
T PRK08857 164 TLPIEAVQFHPESI 177 (193)
T ss_pred CCCEEEEeeCCCcC
Confidence 34789999999754
No 399
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=32.60 E-value=69 Score=19.97 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEEeecccccEeEEEecCCCCcEEEEEecC
Q 039404 22 HLEIDAHVGGVNDIAFSHPNKQLYVITCGD 51 (65)
Q Consensus 22 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 51 (65)
..+++.|..++..++|.+.+. ++++++.
T Consensus 308 i~QfkAhkspiSaLcfdqsgs--llViasi 335 (788)
T KOG2109|consen 308 IRQFKAHKSPISALCFDQSGS--LLVIASI 335 (788)
T ss_pred hhheeeecCcccccccccCce--EEEEEee
Confidence 346889999999999998888 6666543
No 400
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=31.93 E-value=1.1e+02 Score=17.83 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEE
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
..+..-+|-.+|.+ .++.++.||.|+-+
T Consensus 15 A~vv~~DYR~dG~~-~lI~csvdGeVrGy 42 (431)
T PF14782_consen 15 AGVVVADYRMDGKP-QLICCSVDGEVRGY 42 (431)
T ss_pred heeeeeccccCCCc-eEEEEEcCCEEEEe
Confidence 34455566667765 78899999999998
No 401
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=31.64 E-value=78 Score=16.06 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=21.5
Q ss_pred cEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 31 GVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 31 ~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
..-.+++..++. ++++....+.|..++.+
T Consensus 185 ~pDG~~vD~~G~--l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 185 YPDGLAVDSDGN--LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEEEBTTS---EEEEEETTTEEEEEETT
T ss_pred CCCcceEcCCCC--EEEEEcCCCEEEEECCC
Confidence 356789988888 66666677888888876
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.78 E-value=90 Score=16.52 Aligned_cols=37 Identities=3% Similarity=0.067 Sum_probs=22.0
Q ss_pred EeecccccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 24 EIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 24 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
.+.+-...+.+++|+|+... +++.....+.|.-.+..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~ 52 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLD 52 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCC
Confidence 34454556899999998773 45555566676666653
No 403
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=29.98 E-value=1e+02 Score=16.78 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=15.8
Q ss_pred eEEeecccccEeEEEecCCCC
Q 039404 22 HLEIDAHVGGVNDIAFSHPNK 42 (65)
Q Consensus 22 ~~~~~~~~~~v~~~~~~~~~~ 42 (65)
+...++..-+|.+++|+|+..
T Consensus 251 vSTv~~~kYPvtgfQWHPEKn 271 (340)
T KOG1559|consen 251 VSTVESKKYPVTGFQWHPEKN 271 (340)
T ss_pred EEeecceeccceeeeecCccC
Confidence 345566677899999999865
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=1.1e+02 Score=17.05 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=20.3
Q ss_pred cccccEeEEEecCCCCcEEEEEecCCCcEEEE
Q 039404 27 AHVGGVNDIAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 27 ~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
+-...+.++.|+|+.. .|++......-.++
T Consensus 83 g~~~nvS~LTynp~~r--tLFav~n~p~~iVE 112 (316)
T COG3204 83 GETANVSSLTYNPDTR--TLFAVTNKPAAIVE 112 (316)
T ss_pred cccccccceeeCCCcc--eEEEecCCCceEEE
Confidence 3345588999999998 66665555544444
No 405
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=28.99 E-value=1e+02 Score=16.52 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=22.1
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcEEEEECC
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTIKVWDAT 61 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~ 61 (65)
...+.++.|-+++. .++.+..++.+.++...
T Consensus 172 ~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 172 PRWVTAAEFLVDED--TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-
T ss_pred CccEEEEEEecCCc--EEEEEcCCCeEEEEEEC
Confidence 44577888876666 78888999999888664
No 406
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.59 E-value=79 Score=21.29 Aligned_cols=19 Identities=11% Similarity=0.470 Sum_probs=16.5
Q ss_pred EEEEecCCCcEEEEECCCC
Q 039404 45 YVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~ 63 (65)
+++.-..|+-+++|++.+.
T Consensus 285 fifaL~rDg~LR~Wsv~t~ 303 (1480)
T KOG4521|consen 285 FIFALTRDGWLRAWSVETK 303 (1480)
T ss_pred EEEEEecCCeEEeeehhhh
Confidence 7778889999999999874
No 407
>PRK07340 ornithine cyclodeaminase; Validated
Probab=28.55 E-value=86 Score=16.96 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=10.5
Q ss_pred CCCcEEEEECCCCC
Q 039404 51 DDKTIKVWDATNGV 64 (65)
Q Consensus 51 ~~~~i~~w~~~~~~ 64 (65)
..+.+.++|.++|.
T Consensus 81 ~~g~i~l~d~~tG~ 94 (304)
T PRK07340 81 IQGEVVVADAATGE 94 (304)
T ss_pred ceEEEEEEECCCCc
Confidence 34678888888875
No 408
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.91 E-value=89 Score=15.49 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=10.4
Q ss_pred cccEeEEEecCCCC
Q 039404 29 VGGVNDIAFSHPNK 42 (65)
Q Consensus 29 ~~~v~~~~~~~~~~ 42 (65)
..++.+++|+|+..
T Consensus 159 ~~~i~GvQfHPE~~ 172 (187)
T PRK08007 159 QWDLEGVQFHPESI 172 (187)
T ss_pred CCCEEEEEeCCccc
Confidence 34588999999753
No 409
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=27.49 E-value=58 Score=13.28 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=11.4
Q ss_pred cCCCCcEEEEEecCCCcEEEE
Q 039404 38 SHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 38 ~~~~~~~~l~s~~~~~~i~~w 58 (65)
+|-+. .++.++..+...++
T Consensus 9 sPlG~--l~l~a~e~gL~~i~ 27 (77)
T PF02870_consen 9 SPLGP--LLLAASEKGLCGID 27 (77)
T ss_dssp ETTEE--EEEEEETTCEEEEE
T ss_pred CCCeE--EEEEEECCeEEEEE
Confidence 45565 66666666655554
No 410
>TIGR01153 psbC photosystem II 44 kDa subunit reaction center protein (also called P6 protein, CP43), bacterial and chloroplast. This model describes the Photosystem II, 44kDa subunit (also called P6 protein, CP43) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is in many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits 44 kDa protein,DI, DII, Cyt.b, Cyt.f, iron-sulphur protein and others. Functinally 44 kDa subunit is imlicated in chlorophyll binding. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis a
Probab=27.31 E-value=91 Score=18.12 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=13.6
Q ss_pred cCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 38 SHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 38 ~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|.+. .++.+ -++++||.+.+
T Consensus 312 sptge--iifgg---etmrfw~~~~~ 332 (432)
T TIGR01153 312 SPTGE--IIFGG---ETMRFWDFRGP 332 (432)
T ss_pred CCCcc--eEECC---ceeeeeeccCc
Confidence 45565 55443 37899998753
No 411
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=27.05 E-value=1.4e+02 Score=17.40 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.0
Q ss_pred EEEEecCCCcEEEEECCCCC
Q 039404 45 YVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s~~~~~~i~~w~~~~~~ 64 (65)
.++.++.++.+..+|.++|+
T Consensus 408 ~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred eEEEECCCCeEEEEECCCCc
Confidence 67777889999999998885
No 412
>CHL00035 psbC photosystem II 44 kDa protein
Probab=26.92 E-value=92 Score=18.32 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=13.5
Q ss_pred cCCCCcEEEEEecCCCcEEEEECCCC
Q 039404 38 SHPNKQLYVITCGDDKTIKVWDATNG 63 (65)
Q Consensus 38 ~~~~~~~~l~s~~~~~~i~~w~~~~~ 63 (65)
+|.+. .++.+ -++++||.+.+
T Consensus 344 sptge--iifgg---etmrfw~~~~~ 364 (473)
T CHL00035 344 SPTGE--IIFGG---ETMRFWDLRAP 364 (473)
T ss_pred CCCcc--eEECC---ceeeeeeccCc
Confidence 45555 55443 37899998753
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=26.50 E-value=1.2e+02 Score=16.59 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=16.2
Q ss_pred cccEeEEEecCCCCcEEEEEecCCCcE
Q 039404 29 VGGVNDIAFSHPNKQLYVITCGDDKTI 55 (65)
Q Consensus 29 ~~~v~~~~~~~~~~~~~l~s~~~~~~i 55 (65)
..++..+++.|++. ++++-..++.|
T Consensus 305 ~~r~~~v~~~pDG~--Lyv~~d~~G~i 329 (331)
T PF07995_consen 305 GGRPRDVAQGPDGA--LYVSDDSDGKI 329 (331)
T ss_dssp SS-EEEEEEETTSE--EEEEE-TTTTE
T ss_pred CCCceEEEEcCCCe--EEEEECCCCeE
Confidence 34678888888888 56555566665
No 414
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=26.49 E-value=48 Score=11.95 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=6.6
Q ss_pred ccCeEEEEE
Q 039404 4 SRHIVQIYP 12 (65)
Q Consensus 4 ~~~~i~i~~ 12 (65)
.+|.+.+||
T Consensus 12 Y~G~V~Vfd 20 (36)
T PF06200_consen 12 YGGQVCVFD 20 (36)
T ss_pred ECCEEEEeC
Confidence 467788887
No 415
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.42 E-value=90 Score=15.08 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=10.1
Q ss_pred ccEeEEEecCCCC
Q 039404 30 GGVNDIAFSHPNK 42 (65)
Q Consensus 30 ~~v~~~~~~~~~~ 42 (65)
..+.+++|||+..
T Consensus 156 ~~~~g~QfHPE~~ 168 (181)
T cd01742 156 KKIYGVQFHPEVT 168 (181)
T ss_pred CcEEEEEcCCccc
Confidence 4688999998754
No 416
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=25.89 E-value=1.2e+02 Score=16.46 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=22.7
Q ss_pred EeEEEecCCCCcEEEEEecCCCcEEEEECCCCC
Q 039404 32 VNDIAFSHPNKQLYVITCGDDKTIKVWDATNGV 64 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~~~ 64 (65)
++++....++. +|+|.-.-..|.+.+.++|+
T Consensus 146 iNsV~~~~~G~--yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 146 INSVDKDDDGD--YLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred eeeeeecCCcc--EEEEecccCEEEEEECCCCc
Confidence 56777777777 88887777777777766653
No 417
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=25.69 E-value=86 Score=14.59 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=11.9
Q ss_pred CeEEEEECCCCceEee
Q 039404 6 HIVQIYPCNGGDEVRQ 21 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~ 21 (65)
..|.+|++.++..+..
T Consensus 41 E~V~I~Nv~NG~Rf~T 56 (111)
T cd06919 41 EKVLVVNVNNGARFET 56 (111)
T ss_pred CEEEEEECCCCcEEEE
Confidence 3688999998876553
No 418
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=25.39 E-value=92 Score=14.85 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=11.8
Q ss_pred CeEEEEECCCCceEee
Q 039404 6 HIVQIYPCNGGDEVRQ 21 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~ 21 (65)
..|.+|++.++..+..
T Consensus 42 E~V~V~Nv~NG~Rf~T 57 (126)
T TIGR00223 42 EKVDIVNVNNGKRFST 57 (126)
T ss_pred CEEEEEECCCCcEEEE
Confidence 3688999988876553
No 419
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=25.05 E-value=94 Score=14.82 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=11.8
Q ss_pred CeEEEEECCCCceEee
Q 039404 6 HIVQIYPCNGGDEVRQ 21 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~ 21 (65)
..|.+|++.++..+..
T Consensus 42 E~V~V~Nv~NG~Rf~T 57 (126)
T PRK05449 42 EKVQIVNVNNGARFET 57 (126)
T ss_pred CEEEEEECCCCcEEEE
Confidence 3588999988876553
No 420
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=25.01 E-value=1.5e+02 Score=17.09 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=16.3
Q ss_pred EeEEEecCCCCcEEEEEecCC--CcEEEE
Q 039404 32 VNDIAFSHPNKQLYVITCGDD--KTIKVW 58 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~--~~i~~w 58 (65)
.+.++.+|++. +++.+... ...+.|
T Consensus 221 ~NGlaLS~d~s--fvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 221 PNGLALSPDGS--FVLVAETTTARIKRYW 247 (376)
T ss_pred cccccCCCCCC--EEEEEeeccceeeeeE
Confidence 46788999988 77776433 333444
No 421
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains. The N terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller []. Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1UTC_B 3GD1_I 3GC3_B 1BPO_C 1C9I_B 1C9L_A 2XZG_A 2XZH_A.
Probab=24.57 E-value=52 Score=11.69 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=5.8
Q ss_pred cCeEEEEEC
Q 039404 5 RHIVQIYPC 13 (65)
Q Consensus 5 ~~~i~i~~~ 13 (65)
.|.+.+||.
T Consensus 28 ~G~v~l~sv 36 (37)
T PF01394_consen 28 KGQVQLYSV 36 (37)
T ss_dssp EEEEEEEET
T ss_pred eeEEEEEEC
Confidence 456777765
No 422
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=24.51 E-value=1.3e+02 Score=16.25 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=19.9
Q ss_pred EEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 34 DIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 34 ~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
-+.|.|.+. .+.....+|.+.+|..+.
T Consensus 72 P~nW~pp~s--~~~~~~~~g~l~l~~ir~ 98 (253)
T COG1637 72 PLNWQPPGS--SIAAAVRDGLLTLLSIRR 98 (253)
T ss_pred CcccCCCCc--eEEEeecCCceEEEEEcC
Confidence 467888877 666657788888887654
No 423
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=23.47 E-value=69 Score=12.70 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.8
Q ss_pred EEEecCCCC
Q 039404 34 DIAFSHPNK 42 (65)
Q Consensus 34 ~~~~~~~~~ 42 (65)
.+...|+++
T Consensus 5 ~~~~q~DGk 13 (55)
T TIGR02608 5 AVAVQSDGK 13 (55)
T ss_pred EEEECCCCc
Confidence 334444444
No 424
>PF11029 DAZAP2: DAZ associated protein 2 (DAZAP2); InterPro: IPR022730 DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats [, ].
Probab=23.42 E-value=62 Score=15.63 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=13.7
Q ss_pred EEecCCCCcEEEEEecCCCcEEEE
Q 039404 35 IAFSHPNKQLYVITCGDDKTIKVW 58 (65)
Q Consensus 35 ~~~~~~~~~~~l~s~~~~~~i~~w 58 (65)
|....... -++++++|+--.||
T Consensus 116 Vvv~QkK~--~Ff~GGs~gGyt~W 137 (137)
T PF11029_consen 116 VVVTQKKR--SFFTGGSDGGYTIW 137 (137)
T ss_pred EEEEeecc--CeecccCCCceecC
Confidence 33333444 47778888877776
No 425
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.26 E-value=1.2e+02 Score=15.27 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=10.1
Q ss_pred ccEeEEEecCCCC
Q 039404 30 GGVNDIAFSHPNK 42 (65)
Q Consensus 30 ~~v~~~~~~~~~~ 42 (65)
.++.+++|+|+..
T Consensus 160 ~~i~gvQFHPE~~ 172 (195)
T PRK07649 160 LPIEGVQFHPESI 172 (195)
T ss_pred CCEEEEEECCCCC
Confidence 4589999999853
No 426
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.76 E-value=1.1e+02 Score=14.91 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=10.3
Q ss_pred cccEeEEEecCCCC
Q 039404 29 VGGVNDIAFSHPNK 42 (65)
Q Consensus 29 ~~~v~~~~~~~~~~ 42 (65)
..++.+++|+|+..
T Consensus 151 ~~~i~GvQfHPE~~ 164 (178)
T cd01744 151 DLPVFSVQFHPEAS 164 (178)
T ss_pred CCCeEEEeeCCCCC
Confidence 34588999998754
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=22.74 E-value=2e+02 Score=18.25 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.2
Q ss_pred EEEE-ecCCCcEEEEECCCCC
Q 039404 45 YVIT-CGDDKTIKVWDATNGV 64 (65)
Q Consensus 45 ~l~s-~~~~~~i~~w~~~~~~ 64 (65)
+++. +..|+.++-+|.++|+
T Consensus 693 lvF~~gt~d~~l~A~D~~tGk 713 (764)
T TIGR03074 693 LVFIGATQDNYLRAYDLSTGK 713 (764)
T ss_pred EEEEEeCCCCEEEEEECCCCc
Confidence 4554 6789999999999886
No 428
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.73 E-value=1.4e+02 Score=16.01 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=13.0
Q ss_pred eecccccEeEEEecCCCC
Q 039404 25 IDAHVGGVNDIAFSHPNK 42 (65)
Q Consensus 25 ~~~~~~~v~~~~~~~~~~ 42 (65)
+....-++.+++|||+..
T Consensus 198 ie~~~~pi~gvQFHPEks 215 (273)
T cd01747 198 VEAYKYPIYGVQWHPEKN 215 (273)
T ss_pred EEecCCceEEEecCCCcc
Confidence 443445799999999865
No 429
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=22.57 E-value=1.1e+02 Score=14.95 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=10.2
Q ss_pred ccEeEEEecCCCC
Q 039404 30 GGVNDIAFSHPNK 42 (65)
Q Consensus 30 ~~v~~~~~~~~~~ 42 (65)
.++.+++|||+..
T Consensus 156 ~~~~g~QfHPE~~ 168 (188)
T TIGR00888 156 KPIYGVQFHPEVT 168 (188)
T ss_pred CCEEEEeeCCccC
Confidence 3788999998754
No 430
>PRK06046 alanine dehydrogenase; Validated
Probab=22.29 E-value=1.4e+02 Score=16.36 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=10.6
Q ss_pred CCcEEEEECCCCCC
Q 039404 52 DKTIKVWDATNGVK 65 (65)
Q Consensus 52 ~~~i~~w~~~~~~~ 65 (65)
.+.+.++|.++|++
T Consensus 86 ~g~i~L~d~~tG~p 99 (326)
T PRK06046 86 MAVIILNSPETGFP 99 (326)
T ss_pred eEEEEEEeCCCCce
Confidence 36788889888753
No 431
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=22.23 E-value=74 Score=12.61 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=6.9
Q ss_pred cCCCcEEEEE
Q 039404 50 GDDKTIKVWD 59 (65)
Q Consensus 50 ~~~~~i~~w~ 59 (65)
..||++.+|.
T Consensus 46 hedG~~h~WK 55 (56)
T PF14795_consen 46 HEDGTLHFWK 55 (56)
T ss_dssp -TTSSEEEEE
T ss_pred CCCCeEeecC
Confidence 4678888885
No 432
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=22.16 E-value=1.1e+02 Score=14.48 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=14.7
Q ss_pred EeEEEecCCCCcEEEEEecCCCcEE
Q 039404 32 VNDIAFSHPNKQLYVITCGDDKTIK 56 (65)
Q Consensus 32 v~~~~~~~~~~~~~l~s~~~~~~i~ 56 (65)
...-.|||++. .+.....|..+.
T Consensus 70 tHvHvfSpDG~--~lSFTYNDhVmh 92 (122)
T PF12566_consen 70 THVHVFSPDGS--WLSFTYNDHVMH 92 (122)
T ss_pred ccceEECCCCC--EEEEEecchhhc
Confidence 34457899988 665555665543
No 433
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=21.80 E-value=1.9e+02 Score=17.10 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=21.4
Q ss_pred ccEeEEEecCCCCcEEEEEecCCCcEEEEECCC
Q 039404 30 GGVNDIAFSHPNKQLYVITCGDDKTIKVWDATN 62 (65)
Q Consensus 30 ~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~~~ 62 (65)
..-+.++|.|++. ++++--..+.|++++..+
T Consensus 30 ~~Pw~maflPDG~--llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 30 NKPWALLWGPDNQ--LWVTERATGKILRVNPET 60 (454)
T ss_pred CCceEEEEcCCCe--EEEEEecCCEEEEEeCCC
Confidence 3457899999887 666643358888876543
No 434
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=21.50 E-value=1.2e+02 Score=14.70 Aligned_cols=14 Identities=0% Similarity=0.081 Sum_probs=5.6
Q ss_pred EEEecCCCcEEEEE
Q 039404 46 VITCGDDKTIKVWD 59 (65)
Q Consensus 46 l~s~~~~~~i~~w~ 59 (65)
|+++...+.|.+++
T Consensus 13 L~~aT~~gKV~IH~ 26 (136)
T PF14781_consen 13 LACATTGGKVFIHN 26 (136)
T ss_pred EEEEecCCEEEEEC
Confidence 33333444444443
No 435
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=21.39 E-value=75 Score=12.35 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=7.8
Q ss_pred ecCCCcEEEEE
Q 039404 49 CGDDKTIKVWD 59 (65)
Q Consensus 49 ~~~~~~i~~w~ 59 (65)
-..++.+++|.
T Consensus 41 N~dnG~vRiWr 51 (51)
T PF09081_consen 41 NEDNGQVRIWR 51 (51)
T ss_dssp EETTTTEEEEE
T ss_pred hccCCcEEeeC
Confidence 34567899984
No 436
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=21.37 E-value=1.2e+02 Score=14.78 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=9.9
Q ss_pred ccEeEEEecCCCC
Q 039404 30 GGVNDIAFSHPNK 42 (65)
Q Consensus 30 ~~v~~~~~~~~~~ 42 (65)
.++.+++|||+..
T Consensus 159 ~~i~gvQfHPE~~ 171 (184)
T cd01743 159 LPIYGVQFHPESI 171 (184)
T ss_pred CCEEEEeeCCCcC
Confidence 3588999998764
No 437
>PRK05670 anthranilate synthase component II; Provisional
Probab=21.34 E-value=1.2e+02 Score=14.90 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=10.4
Q ss_pred cccEeEEEecCCCC
Q 039404 29 VGGVNDIAFSHPNK 42 (65)
Q Consensus 29 ~~~v~~~~~~~~~~ 42 (65)
..++.+++|+|+..
T Consensus 159 ~~~~~gvQfHPE~~ 172 (189)
T PRK05670 159 ELPIYGVQFHPESI 172 (189)
T ss_pred CCCEEEEeeCCCcC
Confidence 34688999998754
No 438
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=20.81 E-value=1.2e+02 Score=14.47 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=11.7
Q ss_pred CeEEEEECCCCceEee
Q 039404 6 HIVQIYPCNGGDEVRQ 21 (65)
Q Consensus 6 ~~i~i~~~~~~~~~~~ 21 (65)
..|.+|+..++..+..
T Consensus 41 EkV~I~N~nNGaRf~T 56 (126)
T COG0853 41 EKVDIVNVNNGARFST 56 (126)
T ss_pred ceEEEEECCCCcEEEE
Confidence 4578999988876553
No 439
>PRK08618 ornithine cyclodeaminase; Validated
Probab=20.56 E-value=1.7e+02 Score=16.06 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.2
Q ss_pred CCcEEEEECCCCCC
Q 039404 52 DKTIKVWDATNGVK 65 (65)
Q Consensus 52 ~~~i~~w~~~~~~~ 65 (65)
.+.+.++|.++|.+
T Consensus 84 ~g~i~l~d~~tG~p 97 (325)
T PRK08618 84 PGTVILSDFETGEV 97 (325)
T ss_pred eEEEEEEeCCCCce
Confidence 45788888888753
No 440
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=20.44 E-value=2.8e+02 Score=18.60 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=30.0
Q ss_pred cccCeEEEEECCCCceEeeeEEeecccccEeEEEecCCCCcEEEEEecCCCcEEEEEC
Q 039404 3 YSRHIVQIYPCNGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLYVITCGDDKTIKVWDA 60 (65)
Q Consensus 3 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~~i~~w~~ 60 (65)
+-+..|++|+..+++.+. .--.+..++..+...-.+. .++.+..-+.+.+..+
T Consensus 845 ~In~~vrLye~t~~~eLr---~e~~~~~~~~aL~l~v~gd--eI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELR---IECNISNPIIALDLQVKGD--EIAVGDLMRSITLLQY 897 (1096)
T ss_pred ecCcEEEEEEccccceeh---hhhcccCCeEEEEEEecCc--EEEEeeccceEEEEEE
Confidence 345678888876543222 1223445566666655666 6777666666665544
Done!