Query 039405
Match_columns 100
No_of_seqs 118 out of 644
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 3.5E-41 7.5E-46 233.5 9.9 95 1-97 1-103 (104)
2 PLN03220 uncharacterized prote 100.0 1.7E-39 3.8E-44 225.2 10.1 95 1-96 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 2.3E-37 4.9E-42 212.2 9.2 96 1-98 1-100 (100)
4 PLN03219 uncharacterized prote 100.0 5.5E-37 1.2E-41 213.6 9.6 97 1-97 1-105 (108)
5 PF02214 BTB_2: BTB/POZ domain 85.4 1 2.2E-05 29.0 2.9 58 38-99 2-62 (94)
6 PRK02899 adaptor protein; Prov 83.6 0.98 2.1E-05 34.1 2.4 24 59-83 39-62 (197)
7 PRK02315 adaptor protein; Prov 78.0 1.8 3.9E-05 33.3 2.3 24 59-83 39-62 (233)
8 PF02100 ODC_AZ: Ornithine dec 72.1 5.5 0.00012 27.4 3.3 50 45-96 23-76 (108)
9 PF05389 MecA: Negative regula 72.0 1.2 2.7E-05 33.4 0.0 25 58-83 38-62 (220)
10 smart00666 PB1 PB1 domain. Pho 68.7 25 0.00054 21.7 6.5 52 40-97 7-68 (81)
11 smart00153 VHP Villin headpiec 52.3 8.7 0.00019 21.8 1.1 19 55-73 1-19 (36)
12 PF02209 VHP: Villin headpiece 51.3 7.8 0.00017 22.1 0.8 19 55-73 1-19 (36)
13 PRK10308 3-methyl-adenine DNA 49.9 66 0.0014 25.4 6.1 63 34-97 45-121 (283)
14 cd05992 PB1 The PB1 domain is 46.7 66 0.0014 19.6 7.2 54 39-97 5-68 (81)
15 cd06410 PB1_UP2 Uncharacterize 44.8 56 0.0012 22.1 4.4 47 38-89 17-75 (97)
16 PF11834 DUF3354: Domain of un 44.8 17 0.00037 23.4 1.7 16 60-75 27-42 (69)
17 PF12058 DUF3539: Protein of u 40.7 4.7 0.0001 27.5 -1.4 11 54-64 4-14 (88)
18 PF08861 DUF1828: Domain of un 39.2 97 0.0021 20.0 4.8 39 58-96 44-82 (90)
19 PRK14186 bifunctional 5,10-met 38.9 86 0.0019 25.3 5.3 54 33-99 32-87 (297)
20 PRK14189 bifunctional 5,10-met 37.0 1.6E+02 0.0035 23.6 6.6 54 33-99 32-87 (285)
21 PRK14188 bifunctional 5,10-met 36.0 1.2E+02 0.0026 24.4 5.7 55 33-100 32-88 (296)
22 cd06407 PB1_NLP A PB1 domain i 35.2 1.3E+02 0.0028 19.6 5.9 50 39-93 5-65 (82)
23 PF12062 HSNSD: heparan sulfat 34.7 31 0.00067 30.0 2.3 43 31-74 92-141 (487)
24 PF11822 DUF3342: Domain of un 34.3 58 0.0013 26.7 3.7 52 44-99 11-67 (317)
25 PF00564 PB1: PB1 domain; Int 33.7 1.1E+02 0.0025 18.6 4.6 46 39-89 6-62 (84)
26 PRK14193 bifunctional 5,10-met 33.6 2.1E+02 0.0045 23.0 6.7 54 33-99 32-87 (284)
27 PRK14179 bifunctional 5,10-met 33.5 1.5E+02 0.0033 23.7 5.9 54 34-100 33-88 (284)
28 cd06398 PB1_Joka2 The PB1 doma 33.3 1.5E+02 0.0032 19.7 6.1 55 40-95 6-72 (91)
29 PF11876 DUF3396: Protein of u 32.2 38 0.00082 25.7 2.2 40 45-84 23-64 (208)
30 PF00651 BTB: BTB/POZ domain; 31.5 1.3E+02 0.0029 18.7 4.9 54 37-97 13-71 (111)
31 cd04395 RhoGAP_ARHGAP21 RhoGAP 31.2 1E+02 0.0022 22.5 4.3 40 59-99 19-58 (196)
32 PRK14172 bifunctional 5,10-met 30.5 1.8E+02 0.004 23.2 5.9 52 35-99 34-87 (278)
33 PRK10792 bifunctional 5,10-met 29.3 2.8E+02 0.0061 22.2 6.8 53 34-99 34-88 (285)
34 PF11470 TUG-UBL1: GLUT4 regul 29.1 71 0.0015 20.1 2.7 35 45-81 5-39 (65)
35 PRK14176 bifunctional 5,10-met 28.2 2.1E+02 0.0046 23.0 5.9 54 33-99 38-93 (287)
36 PF14317 YcxB: YcxB-like prote 28.1 1.2E+02 0.0026 17.0 3.6 31 33-65 28-58 (62)
37 cd06536 CIDE_N_ICAD CIDE_N dom 27.7 89 0.0019 20.8 3.1 36 45-85 12-47 (80)
38 PRK14170 bifunctional 5,10-met 27.5 2.3E+02 0.0049 22.8 5.9 55 33-100 31-87 (284)
39 PF07429 Glyco_transf_56: 4-al 27.2 1.6E+02 0.0035 24.7 5.2 45 31-75 180-245 (360)
40 PRK02797 4-alpha-L-fucosyltran 27.0 2.4E+02 0.0052 23.3 6.1 45 31-75 141-206 (322)
41 COG1759 5-formaminoimidazole-4 26.7 28 0.0006 29.2 0.6 38 30-68 88-135 (361)
42 PRK14177 bifunctional 5,10-met 26.4 3.3E+02 0.0072 21.8 6.7 52 35-99 35-88 (284)
43 PRK14194 bifunctional 5,10-met 25.9 3.3E+02 0.0072 22.0 6.6 55 33-100 33-89 (301)
44 PF08948 DUF1859: Domain of un 25.8 26 0.00057 25.0 0.3 28 33-62 86-123 (126)
45 TIGR02529 EutJ ethanolamine ut 25.4 73 0.0016 24.1 2.7 29 60-88 45-73 (239)
46 COG4862 MecA Negative regulato 25.4 51 0.0011 25.9 1.9 27 57-84 37-63 (224)
47 TIGR03793 TOMM_pelo TOMM prope 24.6 1.2E+02 0.0026 19.8 3.2 26 57-83 15-44 (77)
48 KOG1748 Acyl carrier protein/N 24.2 47 0.001 24.1 1.4 29 69-97 98-127 (131)
49 PRK13277 5-formaminoimidazole- 24.1 22 0.00047 29.7 -0.4 23 30-52 88-111 (366)
50 cd06396 PB1_NBR1 The PB1 domai 23.6 2.3E+02 0.0049 18.8 5.4 47 45-93 10-64 (81)
51 PF14164 YqzH: YqzH-like prote 23.5 1.8E+02 0.0038 18.7 3.8 35 59-97 4-38 (64)
52 PF00763 THF_DHG_CYH: Tetrahyd 23.4 2.3E+02 0.0051 19.1 4.7 56 31-99 27-84 (117)
53 PRK14166 bifunctional 5,10-met 23.0 4E+02 0.0086 21.3 6.7 54 33-99 30-85 (282)
54 PRK14187 bifunctional 5,10-met 22.6 2.8E+02 0.006 22.4 5.6 54 33-99 32-87 (294)
55 PF11731 Cdd1: Pathogenicity l 22.5 1.4E+02 0.0031 20.3 3.4 33 61-99 44-76 (93)
56 cd01615 CIDE_N CIDE_N domain, 22.3 1.2E+02 0.0025 20.1 2.9 34 45-85 12-45 (78)
57 PRK14190 bifunctional 5,10-met 21.8 2.9E+02 0.0062 22.1 5.5 55 33-100 32-88 (284)
58 cd04751 Commd3 COMM_Domain con 21.7 95 0.0021 20.6 2.4 20 79-98 65-84 (95)
59 cd01406 SIR2-like Sir2-like: P 20.7 1.2E+02 0.0025 22.6 3.0 36 35-77 1-36 (242)
60 PRK14178 bifunctional 5,10-met 20.3 3.3E+02 0.0072 21.8 5.6 55 33-100 26-82 (279)
61 PRK14171 bifunctional 5,10-met 20.1 3.2E+02 0.0069 22.0 5.5 53 34-99 33-87 (288)
62 PLN02897 tetrahydrofolate dehy 20.0 3.2E+02 0.0069 22.7 5.6 55 33-100 86-142 (345)
63 KOG2124 Glycosylphosphatidylin 20.0 1.6E+02 0.0035 27.6 4.1 67 10-77 70-137 (883)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=233.48 Aligned_cols=95 Identities=45% Similarity=0.807 Sum_probs=85.9
Q ss_pred Ccccchh----hHHHHHHHhhcccccccCC----CCCCCCCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhc
Q 039405 1 MTIRFPV----VAHAKNILRQSKLFATRGT----SMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEF 72 (100)
Q Consensus 1 m~~~~~~----~~~~k~~l~r~~s~~~~~~----~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEf 72 (100)
|||+..+ +.++||+||||+|.+++++ ..+.+||+||||||||+ +++||+||++|||||+|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7777554 5689999999999876543 25779999999999998 8999999999999999999999999999
Q ss_pred CCccCCCceeeeCcHHHHHHHHHhh
Q 039405 73 GFNHPMGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 73 G~~~~~G~L~iPC~~~~F~~vl~~l 97 (100)
||+|+ |+|+|||+++.|++++|+|
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence 99998 8999999999999999998
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=225.15 Aligned_cols=95 Identities=57% Similarity=1.000 Sum_probs=83.8
Q ss_pred CcccchhhHH-HHHHHhhcccccccC---CCCCCCCCCceEEEEecCC---CeeEEEEeccCCCcHHHHHHHHhhhhhcC
Q 039405 1 MTIRFPVVAH-AKNILRQSKLFATRG---TSMSKDVPKGYLAVYVGES---QKKRFVIPASLLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 1 m~~~~~~~~~-~k~~l~r~~s~~~~~---~~~~~~vpkG~~aVyVG~~---e~~RfvVp~~~L~hP~F~~LL~~aeEEfG 73 (100)
||++++.|.. .||+|||++ ..++. ++.+.+|||||||||||++ +++|||||++|||||.|++||++||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG 79 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence 8999999994 599999999 43332 2456799999999999972 58999999999999999999999999999
Q ss_pred CccCCCceeeeCcHHHHHHHHHh
Q 039405 74 FNHPMGGLTIPCREDTFINLTSS 96 (100)
Q Consensus 74 ~~~~~G~L~iPC~~~~F~~vl~~ 96 (100)
|+|++|+|+|||+++.|+++++.
T Consensus 80 f~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 80 FNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCCEEeeCCHHHHHHHHHh
Confidence 99966999999999999999863
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=2.3e-37 Score=212.16 Aligned_cols=96 Identities=46% Similarity=0.741 Sum_probs=79.9
Q ss_pred CcccchhhHHHHHHHhhcccccccC----CCCCCCCCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCcc
Q 039405 1 MTIRFPVVAHAKNILRQSKLFATRG----TSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNH 76 (100)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~~~----~~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 76 (100)
|.-++..+..+|+..+++.+..... ++...++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 5556666666666665554432222 123488999999999998 89999999999999999999999999999999
Q ss_pred CCCceeeeCcHHHHHHHHHhhc
Q 039405 77 PMGGLTIPCREDTFINLTSSLS 98 (100)
Q Consensus 77 ~~G~L~iPC~~~~F~~vl~~l~ 98 (100)
+ |+|+|||+++.|++++|+|+
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHhC
Confidence 7 99999999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=5.5e-37 Score=213.58 Aligned_cols=97 Identities=48% Similarity=0.844 Sum_probs=81.8
Q ss_pred CcccchhhHHHHHHHhhccccccc-------CCCCCCCCCCceEEEEecC-CCeeEEEEeccCCCcHHHHHHHHhhhhhc
Q 039405 1 MTIRFPVVAHAKNILRQSKLFATR-------GTSMSKDVPKGYLAVYVGE-SQKKRFVIPASLLSQPSFQELLSKAEDEF 72 (100)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~s~~~~-------~~~~~~~vpkG~~aVyVG~-~e~~RfvVp~~~L~hP~F~~LL~~aeEEf 72 (100)
||+..+.+..+||++|-.+-..+. +.+.+.+|||||+|||||+ +|++||+||++|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 788888888999988733322111 1234578999999999998 46999999999999999999999999999
Q ss_pred CCccCCCceeeeCcHHHHHHHHHhh
Q 039405 73 GFNHPMGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 73 G~~~~~G~L~iPC~~~~F~~vl~~l 97 (100)
||+|++|+|+|||+++.|+++++.-
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 9998669999999999999999864
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=85.39 E-value=1 Score=28.96 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=41.8
Q ss_pred EEEecCCCeeEEEEeccCCC-cH--HHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 38 AVYVGESQKKRFVIPASLLS-QP--SFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 38 aVyVG~~e~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
.+=||. ++|.++.+-|. +| .|..++........-+ +.|.+-|-++...|++|+..++.
T Consensus 2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~-~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDD-DDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEET-TTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCC-ccceEEeccChhhhhHHHHHHhh
Confidence 345774 99999998887 54 6888888653222222 23899999999999999988753
No 6
>PRK02899 adaptor protein; Provisional
Probab=83.57 E-value=0.98 Score=34.09 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhcCCccCCCceee
Q 039405 59 PSFQELLSKAEDEFGFNHPMGGLTI 83 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~i 83 (100)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 3578889999999999987 99976
No 7
>PRK02315 adaptor protein; Provisional
Probab=78.01 E-value=1.8 Score=33.32 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhcCCccCCCceee
Q 039405 59 PSFQELLSKAEDEFGFNHPMGGLTI 83 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~i 83 (100)
-+|..+|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4699999999999999986 99986
No 8
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=72.11 E-value=5.5 Score=27.41 Aligned_cols=50 Identities=30% Similarity=0.416 Sum_probs=26.0
Q ss_pred CeeEEE-EeccCCCc---HHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHh
Q 039405 45 QKKRFV-IPASLLSQ---PSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSS 96 (100)
Q Consensus 45 e~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~ 96 (100)
++.=|| +|-..+.+ ..|.+||+.|||.+|.++ -.+.++=+-.....++..
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~ 76 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRT 76 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhh
Confidence 455666 46544444 559999999999999875 367777555555555443
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.96 E-value=1.2 Score=33.38 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhhhhcCCccCCCceee
Q 039405 58 QPSFQELLSKAEDEFGFNHPMGGLTI 83 (100)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~i 83 (100)
+-.|..+|++|.+|+||+.+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 45699999999999999986 88875
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=68.75 E-value=25 Score=21.71 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=37.1
Q ss_pred EecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCc----------cCCCceeeeCcHHHHHHHHHhh
Q 039405 40 YVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFN----------HPMGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 40 yVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~iPC~~~~F~~vl~~l 97 (100)
+-|+ +.+||.+|- ...|.+|..+..+.|+.. .++..++|.++. .+...+.+.
T Consensus 7 ~~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~ 68 (81)
T smart00666 7 RYGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEY 68 (81)
T ss_pred EECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHH
Confidence 3365 789999985 778999999999999874 232467888865 455555443
No 11
>smart00153 VHP Villin headpiece domain.
Probab=52.31 E-value=8.7 Score=21.82 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHhhhhhcC
Q 039405 55 LLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (100)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 12
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=51.31 E-value=7.8 Score=22.11 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHhhhhhcC
Q 039405 55 LLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (100)
||+.-.|++++.++.+||-
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 13
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=49.86 E-value=66 Score=25.36 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=44.1
Q ss_pred CceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccC--------------CCceeeeCcHHHHHHHHHhh
Q 039405 34 KGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHP--------------MGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~iPC~~~~F~~vl~~l 97 (100)
.|++.|.-.+ .+.++.|.++.-.-|....++.....-|+.+.+ .-+|++|...+.||.+++.|
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4666666544 455666666654345566777777777777765 24699999999999998865
No 14
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=46.67 E-value=66 Score=19.57 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=37.4
Q ss_pred EEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCc----------cCCCceeeeCcHHHHHHHHHhh
Q 039405 39 VYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFN----------HPMGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 39 VyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~iPC~~~~F~~vl~~l 97 (100)
++-+. +.+||.+|- .++.|.+|..+-.+.|+.. .++-.++|.++ +.++..+...
T Consensus 5 ~~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~ 68 (81)
T cd05992 5 VKYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEA 68 (81)
T ss_pred EEecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 44444 789999997 8889999999999988875 12124556555 4566666554
No 15
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=44.77 E-value=56 Score=22.09 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=33.4
Q ss_pred EEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccC------------CCceeeeCcHHH
Q 039405 38 AVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHP------------MGGLTIPCREDT 89 (100)
Q Consensus 38 aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~------------~G~L~iPC~~~~ 89 (100)
.=|||. +.+--.|+-+ -.|.+|..+..+.++..++ .+-+.|.||.+.
T Consensus 17 l~Y~GG-~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl 75 (97)
T cd06410 17 LRYVGG-ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDL 75 (97)
T ss_pred EEEcCC-ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHH
Confidence 469997 7788888866 4677788888888776651 146677888743
No 16
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=44.76 E-value=17 Score=23.37 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhhcCCc
Q 039405 60 SFQELLSKAEDEFGFN 75 (100)
Q Consensus 60 ~F~~LL~~aeEEfG~~ 75 (100)
.+++||+.|++.||+.
T Consensus 27 SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 27 SLEELLKIASEKFGFS 42 (69)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 6999999999999996
No 17
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.65 E-value=4.7 Score=27.52 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.9
Q ss_pred cCCCcHHHHHH
Q 039405 54 SLLSQPSFQEL 64 (100)
Q Consensus 54 ~~L~hP~F~~L 64 (100)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999998544
No 18
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=39.17 E-value=97 Score=19.98 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHh
Q 039405 58 QPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSS 96 (100)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~ 96 (100)
.|.=+++|+..-..||.+-+.|.|.+.++.+.|-.....
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 677789999999999999888999999999988776654
No 19
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.95 E-value=86 Score=25.29 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=40.7
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.|++|++.+ .+.+| ++.+.+...+..|+.
T Consensus 32 ~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 32 PPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred CceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44788999997 21 233456777889999999875 56676 889999999988865
No 20
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.01 E-value=1.6e+02 Score=23.55 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.||.|++.+ .+.+| ++.+.|+..+..|+.
T Consensus 32 ~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 34888999997 21 234566777889999999876 67888 889999999998875
No 21
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.98 E-value=1.2e+02 Score=24.35 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=41.0
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...|.||+ +. ..-....--.++.|++|++.+ .+.+| ++.+.+...+..|+.+
T Consensus 32 ~p~La~i~vg~-~~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 32 TPGLAVVLVGE-DP----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 44888999997 21 123356677889999999865 56676 8899999999888653
No 22
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=35.18 E-value=1.3e+02 Score=19.58 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=35.7
Q ss_pred EEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCcc-----------CCCceeeeCcHHHHHHH
Q 039405 39 VYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNH-----------PMGGLTIPCREDTFINL 93 (100)
Q Consensus 39 VyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~iPC~~~~F~~v 93 (100)
+..|+ +..||.+|.+ .-|++|.++-.+-|+.+. ++...+|.|+.+.=+.+
T Consensus 5 ~~~~~-d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 5 ATYGE-EKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred EEeCC-eEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 34465 7899999864 368999998888888753 23467888888765543
No 23
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=34.68 E-value=31 Score=29.97 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=36.5
Q ss_pred CCC-CceEEEEecCCCeeEEEEec-----cCCCcHH-HHHHHHhhhhhcCC
Q 039405 31 DVP-KGYLAVYVGESQKKRFVIPA-----SLLSQPS-FQELLSKAEDEFGF 74 (100)
Q Consensus 31 ~vp-kG~~aVyVG~~e~~RfvVp~-----~~L~hP~-F~~LL~~aeEEfG~ 74 (100)
.+| ||.+|+++-. ++.||-|-+ .|+|-+. -++||++=..|||-
T Consensus 92 i~~~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 92 IASGKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EccCCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 344 6899999976 788998886 8999998 89999999999874
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=34.28 E-value=58 Score=26.75 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=38.2
Q ss_pred CCeeEEEEeccCCCc--HHHHHHHHh---hhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 44 SQKKRFVIPASLLSQ--PSFQELLSK---AEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 44 ~e~~RfvVp~~~L~h--P~F~~LL~~---aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
+..+=|..|.+.|-. .-|++.|.. +.++.. + =.|.+-||+..|+.++.-+++
T Consensus 11 ~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 11 NEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred CcceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHhhc
Confidence 357789999888854 559999965 333322 2 358999999999999987653
No 25
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=33.71 E-value=1.1e+02 Score=18.59 Aligned_cols=46 Identities=35% Similarity=0.491 Sum_probs=30.4
Q ss_pred EEecCCCeeE-EEEeccCCCcHHHHHHHHhhhhhcCCc----------cCCCceeeeCcHHH
Q 039405 39 VYVGESQKKR-FVIPASLLSQPSFQELLSKAEDEFGFN----------HPMGGLTIPCREDT 89 (100)
Q Consensus 39 VyVG~~e~~R-fvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~iPC~~~~ 89 (100)
++-++ +.+| +.+| ..+.|.+|..+.++.||.. .++-.++|.++.+.
T Consensus 6 ~~~~~-~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl 62 (84)
T PF00564_consen 6 VRYGG-DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDL 62 (84)
T ss_dssp EEETT-EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHH
T ss_pred EEECC-eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHH
Confidence 34444 4555 4444 5679999999999999983 23225777776653
No 26
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.64 E-value=2.1e+02 Score=22.98 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=41.4
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|+||+ +. ..-.....-.++.|+.|++.+ .+.+| ++.+.|...+..|+.
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888899997 21 123466778889999999875 57788 889999999988865
No 27
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.48 E-value=1.5e+02 Score=23.67 Aligned_cols=54 Identities=13% Similarity=0.367 Sum_probs=41.0
Q ss_pred CceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 34 KGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
.+...|.||+ +. ..-....--.++.|+.|++.+ .+.+| ++.+.|...+..|+.+
T Consensus 33 P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 33 PGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred ceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 3788899997 21 123456667789999999875 67888 8899999999988753
No 28
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=33.27 E-value=1.5e+02 Score=19.73 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=38.2
Q ss_pred EecCCCeeEEEEeccCC-CcHHHHHHHHhhhhhcCCcc-----------CCCceeeeCcHHHHHHHHH
Q 039405 40 YVGESQKKRFVIPASLL-SQPSFQELLSKAEDEFGFNH-----------PMGGLTIPCREDTFINLTS 95 (100)
Q Consensus 40 yVG~~e~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~-----------~~G~L~iPC~~~~F~~vl~ 95 (100)
.-|+ +.+||-+|.+-. .+.-|..|.++-++-|.... ++.-++|.|+.+.-+.+-.
T Consensus 6 ~y~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 6 KYGG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred EeCC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3355 799999997411 14478888888888777653 2345888999887776654
No 29
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=32.25 E-value=38 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=31.1
Q ss_pred CeeEEEEeccCCCc-H-HHHHHHHhhhhhcCCccCCCceeee
Q 039405 45 QKKRFVIPASLLSQ-P-SFQELLSKAEDEFGFNHPMGGLTIP 84 (100)
Q Consensus 45 e~~RfvVp~~~L~h-P-~F~~LL~~aeEEfG~~~~~G~L~iP 84 (100)
+-=+|.+|++||.. | .|++|+....+++-+.|-.+++.+-
T Consensus 23 s~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 23 SYLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred cEEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 34689999999987 2 4999999999988777655566554
No 30
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=31.47 E-value=1.3e+02 Score=18.66 Aligned_cols=54 Identities=20% Similarity=0.505 Sum_probs=36.4
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCC--ceeee-CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMG--GLTIP-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~iP-C~~~~F~~vl~~l 97 (100)
+.+.|| +.++|-+.-..| ..|.|+.+++.. +.... + .+.++ ++.+.|+.++..+
T Consensus 13 ~~i~v~--d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVG--DGKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEET--TTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEEC--CCEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccccc
Confidence 355566 258888887777 568999999988 21212 3 35555 8899999988754
No 31
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.22 E-value=1e+02 Score=22.45 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 59 PSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
|.|....-..-++.|.+.+ |.-++|.+...-+.+...+++
T Consensus 19 P~iv~~~~~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~l~~ 58 (196)
T cd04395 19 PLIVEVCCNIVEARGLETV-GIYRVPGNNAAISALQEELNR 58 (196)
T ss_pred ChHHHHHHHHHHHcCCCCc-cceeCCCcHHHHHHHHHHHhc
Confidence 5555555556678899888 999999999998888887765
No 32
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.49 E-value=1.8e+02 Score=23.20 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=39.4
Q ss_pred ceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 35 GYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+...|.||+ +. ........-.++.|+.|...+ .+.+| |+.+.+...+..|+.
T Consensus 34 ~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 34 KIASILVGN-DG----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred eEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 788899997 21 122345567789999999875 67888 889999999988865
No 33
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.32 E-value=2.8e+02 Score=22.24 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=40.3
Q ss_pred CceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 34 KGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
.+...|.||+ +. ..-....--.++.+|.|++.. .+.+| ++.+.|...+..|+.
T Consensus 34 P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 34 PGLAVVLVGS-DP----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred ceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4788889997 21 123456677788999999865 57787 899999999998875
No 34
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=29.06 E-value=71 Score=20.14 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=20.7
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCce
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGL 81 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 81 (100)
..+|+.|++.= .-.+.++|++|-+.||++.+.+.|
T Consensus 5 ~~rr~~vkvtp--~~~l~~VL~eac~k~~l~~~~~~L 39 (65)
T PF11470_consen 5 NFRRFKVKVTP--NTTLNQVLEEACKKFGLDPSSYDL 39 (65)
T ss_dssp TS-EEEE---T--TSBHHHHHHHHHHHTT--GGG-EE
T ss_pred CCcEEEEEECC--CCCHHHHHHHHHHHcCCCccceEE
Confidence 35777777653 336889999999999998764444
No 35
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.21 E-value=2.1e+02 Score=22.98 Aligned_cols=54 Identities=20% Similarity=0.406 Sum_probs=41.4
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.|+.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 38 ~P~Laii~vg~-d~----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 38 TPGLATILVGD-DP----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred CCeEEEEEECC-Cc----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888999997 21 234566778889999999875 57777 788899999988865
No 36
>PF14317 YcxB: YcxB-like protein
Probab=28.06 E-value=1.2e+02 Score=16.97 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHH
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELL 65 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL 65 (100)
-+.++-+|+++ ..-++||-+.++.-...++.
T Consensus 28 ~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 28 TKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred eCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 46788889985 69999999998844444443
No 37
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=27.67 E-value=89 Score=20.78 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=24.1
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeeeC
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPC 85 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iPC 85 (100)
..+||=|=++ .+++|+.++.+-|....+.++++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 3455555544 36899999999999985423555544
No 38
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.48 E-value=2.3e+02 Score=22.78 Aligned_cols=55 Identities=18% Similarity=0.407 Sum_probs=41.1
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...|.||+ +. ..-.....-.++.|++|.+.+ .+.+| ++.+.+...+..|+.+
T Consensus 31 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D 87 (284)
T PRK14170 31 KPGLAVVLVGD-NQ----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELNED 87 (284)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 44899999997 21 123466777889999999875 56777 7788899998888653
No 39
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=27.23 E-value=1.6e+02 Score=24.71 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=35.3
Q ss_pred CCCCceEEEEecC-------------------CCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCc
Q 039405 31 DVPKGYLAVYVGE-------------------SQKKRFVIPASLL--SQPSFQELLSKAEDEFGFN 75 (100)
Q Consensus 31 ~vpkG~~aVyVG~-------------------~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~ 75 (100)
..++|-+.|.||. ++..|+.||++|= |.--.+++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 3457899999985 1468999999996 4567888888888889854
No 40
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=27.02 E-value=2.4e+02 Score=23.33 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCCceEEEEecC-------------------CCeeEEEEeccC--CCcHHHHHHHHhhhhhcCCc
Q 039405 31 DVPKGYLAVYVGE-------------------SQKKRFVIPASL--LSQPSFQELLSKAEDEFGFN 75 (100)
Q Consensus 31 ~vpkG~~aVyVG~-------------------~e~~RfvVp~~~--L~hP~F~~LL~~aeEEfG~~ 75 (100)
..+++.+.|.||. ++.-|+.||++| =|.--.++..+.+.|-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 4477889999996 134599999999 56666777777777888844
No 41
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.71 E-value=28 Score=29.15 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCCCceEEEEecCC-CeeEEEEec---------cCCCcHHHHHHHHhh
Q 039405 30 KDVPKGYLAVYVGES-QKKRFVIPA---------SLLSQPSFQELLSKA 68 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~-e~~RfvVp~---------~~L~hP~F~~LL~~a 68 (100)
--+|.|.|++|||-+ --..|.||+ +- ..-.=..||++|
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~-~~~~~~~lLekA 135 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEE-DRKLEYKLLEKA 135 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcccccHhHhhhhc-chhhHHHHHHHc
Confidence 468999999999962 135577764 11 222345677776
No 42
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.42 E-value=3.3e+02 Score=21.85 Aligned_cols=52 Identities=12% Similarity=0.285 Sum_probs=39.6
Q ss_pred ceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 35 GYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+...|.||+ +. ..-....--.++.|++|++.+ .+.+| |+.+.+...+..|+.
T Consensus 35 ~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 35 KLATILVGN-NP----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred eEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 788899997 21 123455667789999999876 57777 899999999998875
No 43
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.91 E-value=3.3e+02 Score=22.01 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...+.||++ . ..-.....-.++.|+.|...+ .+.+| ++.+.+...+..|+.+
T Consensus 33 ~P~LaiI~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~D 89 (301)
T PRK14194 33 EPALAVILVGND-P----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAELNAD 89 (301)
T ss_pred CCeEEEEEeCCC-h----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcCC
Confidence 448889999972 1 123456677889999999875 57787 8899999999888753
No 44
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=25.78 E-value=26 Score=24.98 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=8.3
Q ss_pred CCceEEEEecCCCeeEEE----------EeccCCCcHHHH
Q 039405 33 PKGYLAVYVGESQKKRFV----------IPASLLSQPSFQ 62 (100)
Q Consensus 33 pkG~~aVyVG~~e~~Rfv----------Vp~~~L~hP~F~ 62 (100)
..||+|+.|-. +-.|+ +|+-+||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 57999999963 45555 688888888644
No 45
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.44 E-value=73 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhcCCccCCCceeeeCcHH
Q 039405 60 SFQELLSKAEDEFGFNHPMGGLTIPCRED 88 (100)
Q Consensus 60 ~F~~LL~~aeEEfG~~~~~G~L~iPC~~~ 88 (100)
.++.|.+++|+-.|...+.-.+++|++..
T Consensus 45 ~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 45 IVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred HHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 58889999988889876656799998654
No 46
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=25.43 E-value=51 Score=25.95 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.4
Q ss_pred CcHHHHHHHHhhhhhcCCccCCCceeee
Q 039405 57 SQPSFQELLSKAEDEFGFNHPMGGLTIP 84 (100)
Q Consensus 57 ~hP~F~~LL~~aeEEfG~~~~~G~L~iP 84 (100)
.|-.|-++++.+.+|-+|..+ |+|+|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccC-CceEEE
Confidence 367899999999999999987 999874
No 47
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=24.57 E-value=1.2e+02 Score=19.76 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=17.7
Q ss_pred CcHHHHHHH----HhhhhhcCCccCCCceee
Q 039405 57 SQPSFQELL----SKAEDEFGFNHPMGGLTI 83 (100)
Q Consensus 57 ~hP~F~~LL----~~aeEEfG~~~~~G~L~i 83 (100)
..|.|++.| ..+=+||||+-+ ..+.|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 578899866 445578899977 44443
No 48
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.17 E-value=47 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=20.4
Q ss_pred hhhcCCccCC-CceeeeCcHHHHHHHHHhh
Q 039405 69 EDEFGFNHPM-GGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 69 eEEfG~~~~~-G~L~iPC~~~~F~~vl~~l 97 (100)
||||||+-+. -.=.|-|-.+.+++|.+..
T Consensus 98 EEEFgiEIpd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 98 EEEFGIEIPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred HHHhCCccCcchhhhhCCHHHHHHHHHhcc
Confidence 8999998653 2346777777777776654
No 49
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=24.14 E-value=22 Score=29.66 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=17.7
Q ss_pred CCCCCceEEEEecCCCee-EEEEe
Q 039405 30 KDVPKGYLAVYVGESQKK-RFVIP 52 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~e~~-RfvVp 52 (100)
--+|.|.|++|||-+.-+ .|-||
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCC
Confidence 468999999999972223 68888
No 50
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=23.59 E-value=2.3e+02 Score=18.76 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=34.6
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCc--------cCCCceeeeCcHHHHHHH
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFN--------HPMGGLTIPCREDTFINL 93 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~~G~L~iPC~~~~F~~v 93 (100)
+..||.++-+ .++.|.+|..+-+.-|+++ .++-+++|.|+.+.=|.+
T Consensus 10 d~~rf~~~~~--~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE~~ 64 (81)
T cd06396 10 ESQSFLVSDS--ENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEEAL 64 (81)
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHHHH
Confidence 7899999841 2557999999999999853 344578999988754443
No 51
>PF14164 YqzH: YqzH-like protein
Probab=23.47 E-value=1.8e+02 Score=18.69 Aligned_cols=35 Identities=9% Similarity=0.407 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhh
Q 039405 59 PSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSL 97 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l 97 (100)
-+...++.++=+.||++.+ +.|=+...++.+...|
T Consensus 4 k~I~Kmi~~~l~QYg~d~~----~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 4 KLIEKMIINCLRQYGYDVE----CMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHHHHHhCCccc----CCCCCHHHHHHHHHHH
Confidence 3567888899999999966 6788888888887765
No 52
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=23.44 E-value=2.3e+02 Score=19.13 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 31 DVPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 31 ~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
..+.+...|+||+ +. ..-.......++.+++|.+-. ...+| ++.+.|...+..++.
T Consensus 27 ~~~P~Laii~vg~-d~----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 27 GITPKLAIILVGD-DP----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp T---EEEEEEES---H----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCC-Ch----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHhC
Confidence 3466888999997 21 122367788889999999865 56665 677888888887764
No 53
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.00 E-value=4e+02 Score=21.34 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=40.7
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
..+...|.||+ +. ..-.....-.+++|++|.+.+ .+.+| ++.+.|...+..|+.
T Consensus 30 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 30 ESCLAVILVGD-NP----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888999997 21 123456677888999999875 67787 888999999988865
No 54
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.55 E-value=2.8e+02 Score=22.40 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=40.2
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-.....-.++.|+.|+..+ -+.+| ++.+.|...+..|+.
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 32 FPCLIVILVGD-DP----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELNN 87 (294)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888999997 21 233456777889999999875 56777 778889888888864
No 55
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=22.48 E-value=1.4e+02 Score=20.26 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 61 FQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 61 F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
=.+|-++.++-.|..+| ||-.++|..++-..+.
T Consensus 44 P~~Ly~~lc~~~G~~~D------pCvldvfr~av~~a~~ 76 (93)
T PF11731_consen 44 PEELYERLCALTGQRHD------PCVLDVFRCAVYFANG 76 (93)
T ss_pred HHHHHHHHHHHcCCcCC------cHHHHHHHHHHHHHcC
Confidence 35677777787888887 8999999999876653
No 56
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.28 E-value=1.2e+02 Score=20.08 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=23.2
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeeeC
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIPC 85 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iPC 85 (100)
..+||=|=++ .+++|+.++.+-|+... .+++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~--~~~~lvL 45 (78)
T cd01615 12 RSRKKGVAAS-----SLEELLSKACEKLKLPS--APVTLVL 45 (78)
T ss_pred CCeeEEEEcC-----CHHHHHHHHHHHcCCCC--CCeEEEE
Confidence 3456655544 36899999999999973 3444444
No 57
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.84 E-value=2.9e+02 Score=22.14 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=40.9
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...|.||+ +. ..-....--.++.|+.|++.+ .+.+| ++.+.|+..+..|+.+
T Consensus 32 ~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 32 VPGLAVILVGD-DP----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred CCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 34788899997 21 133456677889999999875 67788 7788999999888653
No 58
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=21.69 E-value=95 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=18.0
Q ss_pred CceeeeCcHHHHHHHHHhhc
Q 039405 79 GGLTIPCREDTFINLTSSLS 98 (100)
Q Consensus 79 G~L~iPC~~~~F~~vl~~l~ 98 (100)
..+.+-|+++.|++++..|+
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 47999999999999998875
No 59
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=20.68 E-value=1.2e+02 Score=22.56 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=27.9
Q ss_pred ceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccC
Q 039405 35 GYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHP 77 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~ 77 (100)
|.++++||-+-... .+-|...+|++...+++|.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 67899999732222 5789999999999999987754
No 60
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.29 E-value=3.3e+02 Score=21.76 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=40.4
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...|.||+ +. ..-.....-.++.|+.|++.+ .+.+| ++.+.|+..+..|+.+
T Consensus 26 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 26 YPRLATVIVGD-DP----------ASQMYVRMKHRACERVGIGSV--GIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 34788999997 11 122356677889999999875 56776 7888999999888653
No 61
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.13 E-value=3.2e+02 Score=21.98 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=39.5
Q ss_pred CceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 34 KGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
.+...|.||+ +. ..-....--.++.++.|++.+ .+.+| ++.+.+...+..|+.
T Consensus 33 P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 33 PKLAIVLVGD-NP----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred CeEEEEEeCC-Cc----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 3688999997 21 123455667788999999875 67777 888889988888865
No 62
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.01 E-value=3.2e+02 Score=22.68 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=40.6
Q ss_pred CCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
+.+...|.||+ +. ..-....--.++.|++|++.+ .+.+| ++.+.++..+..|+.+
T Consensus 86 ~P~LaiIlvGd-dp----------aS~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 86 VPGLAVVLVGQ-QR----------DSQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred CCeEEEEEeCC-Ch----------HHHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 34788899997 21 112456677889999999976 57777 7888999999888653
No 63
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=20.01 E-value=1.6e+02 Score=27.58 Aligned_cols=67 Identities=15% Similarity=0.325 Sum_probs=47.5
Q ss_pred HHHHHHhhcccccccCCCCCCCCCCceEEEEecCCCeeEEEEeccCCCcHH-HHHHHHhhhhhcCCccC
Q 039405 10 HAKNILRQSKLFATRGTSMSKDVPKGYLAVYVGESQKKRFVIPASLLSQPS-FQELLSKAEDEFGFNHP 77 (100)
Q Consensus 10 ~~k~~l~r~~s~~~~~~~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~-F~~LL~~aeEEfG~~~~ 77 (100)
-+|+++.+.-+..-.....++.-..||+|..-|..| .==-|+....++|. |.....++.--|+|.++
T Consensus 70 ~LR~ii~~qg~~GiS~tr~PTeSRpghvAliaGfye-dpSAvtkgwk~NPv~FDsvFN~S~~t~~~gs~ 137 (883)
T KOG2124|consen 70 FLRSIILNQGTVGISHTRVPTESRPGHVALIAGFYE-DPSAVTKGWKSNPVNFDSVFNRSRHTYSFGSP 137 (883)
T ss_pred cHHHHHHhcCcccccccCCCCCCCCCcEEEEecccc-ChHHhhhhhhcCCchhhhhhhhhhhhhcccCc
Confidence 466666666555444556678888999999999721 11234556667776 99999999999988665
Done!