Query 039405
Match_columns 100
No_of_seqs 118 out of 644
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2al3_A TUG long isoform; TUG U 65.9 7.2 0.00025 25.5 3.7 36 45-82 18-53 (90)
2 1und_A Advillin, P92; actin bi 64.0 2.4 8.2E-05 23.6 0.9 19 54-72 1-19 (37)
3 1y74_B MLIN-2/CASK, peripheral 52.5 4.7 0.00016 22.9 0.9 20 54-73 26-49 (50)
4 2nz0_B Potassium voltage-gated 51.8 18 0.00061 24.8 4.0 63 32-99 32-95 (140)
5 1s1g_A Potassium voltage-gated 49.6 13 0.00044 25.0 2.9 62 33-99 11-73 (124)
6 2vpk_A Myoneurin; transcriptio 47.3 30 0.001 21.4 4.3 50 37-97 25-79 (116)
7 2vkp_A BTB/POZ domain-containi 45.0 39 0.0013 20.5 4.4 56 37-97 11-70 (109)
8 1r29_A B-cell lymphoma 6 prote 43.3 32 0.0011 21.7 4.0 53 37-97 32-88 (127)
9 3drz_A BTB/POZ domain-containi 43.2 62 0.0021 20.5 5.7 60 34-98 5-69 (107)
10 2xko_C PIPX, global nitrogen r 42.4 2.8 9.5E-05 27.7 -1.3 11 54-64 5-15 (89)
11 1yu8_X Villin; alpha helix, 3- 40.4 9.2 0.00032 23.7 0.9 20 54-73 31-50 (67)
12 1ujs_A Actin-binding LIM prote 36.8 12 0.00041 24.4 1.1 20 54-73 46-65 (88)
13 3ga1_A Nucleus accumbens-assoc 36.4 60 0.0021 20.5 4.5 50 37-97 36-89 (129)
14 1qzp_A Dematin; villin headpie 35.7 8.1 0.00028 23.9 0.1 20 54-73 32-51 (68)
15 2k6m_S Supervillin; SVHP, HP, 34.5 10 0.00034 23.5 0.4 20 54-73 31-50 (67)
16 1nn7_A Potassium channel KV4.2 34.4 9.1 0.00031 24.8 0.2 58 37-99 2-60 (105)
17 4b4u_A Bifunctional protein fo 34.2 59 0.002 25.2 4.8 53 32-100 52-109 (303)
18 3pmi_A PWWP domain-containing 29.8 18 0.00061 25.4 1.1 29 45-73 47-78 (134)
19 3n5b_B ASR0485 protein; PII, P 29.7 6.1 0.00021 27.0 -1.3 26 30-64 13-38 (112)
20 1vd2_A Protein kinase C, IOTA 29.4 1.1E+02 0.0038 19.4 4.9 28 45-76 16-43 (89)
21 2ccq_A P97, peptide N-glycanas 29.0 58 0.002 21.0 3.4 43 56-98 46-96 (99)
22 2if5_A Zinc finger and BTB dom 27.8 1E+02 0.0035 18.9 4.5 54 37-97 28-84 (120)
23 3b84_A Zinc finger and BTB dom 27.1 1E+02 0.0035 19.1 4.4 50 37-97 27-79 (119)
24 1y6i_A Mg-chelatase cofactor G 26.7 5.2 0.00018 30.3 -2.3 30 30-62 200-229 (233)
25 3ngx_A Bifunctional protein fo 26.5 1.5E+02 0.0051 22.5 5.8 51 32-99 26-81 (276)
26 1wy3_A Villin; structural prot 26.2 22 0.00076 19.3 0.8 17 56-72 1-17 (35)
27 4a26_A Putative C-1-tetrahydro 25.1 1.4E+02 0.0049 22.9 5.6 55 32-99 36-92 (300)
28 3ohu_A Transcription regulator 24.7 79 0.0027 19.7 3.5 52 37-97 35-90 (125)
29 1zav_U 50S ribosomal protein L 24.4 43 0.0015 17.5 1.7 13 61-73 18-30 (30)
30 1w8x_N Protein P31, protein C, 24.2 18 0.00061 24.8 0.2 28 33-62 86-123 (126)
31 1z3x_A Putative cytidyltransfe 22.8 3.6 0.00012 31.3 -3.9 29 30-61 208-236 (238)
32 3ezo_A Malonyl COA-acyl carrie 21.8 51 0.0017 24.7 2.4 40 35-75 10-49 (318)
33 3qli_A Coenzyme A transferase; 21.6 50 0.0017 26.9 2.4 44 30-74 402-454 (455)
34 3htm_A Speckle-type POZ protei 21.2 1.7E+02 0.0056 18.8 4.6 54 37-97 37-93 (172)
35 2bkf_A Zinc-finger protein NBR 20.3 1.8E+02 0.0062 18.7 5.3 51 40-94 13-71 (87)
No 1
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=65.93 E-value=7.2 Score=25.51 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=28.3
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCcee
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLT 82 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~ 82 (100)
..+|+.|++. ..-.+.++|++|.+.||++.+...|.
T Consensus 18 n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 18 NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp TSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred CCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 5799999983 44468899999999999987655553
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=64.01 E-value=2.4 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=17.2
Q ss_pred cCCCcHHHHHHHHhhhhhc
Q 039405 54 SLLSQPSFQELLSKAEDEF 72 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEf 72 (100)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 3
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=52.50 E-value=4.7 Score=22.92 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=15.2
Q ss_pred cCCCcHHHHHHHHh----hhhhcC
Q 039405 54 SLLSQPSFQELLSK----AEDEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~----aeEEfG 73 (100)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46889999999974 566664
No 4
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=51.78 E-value=18 Score=24.82 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCceEEEEecCCCeeEEEEeccCC-CcHHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 32 VPKGYLAVYVGESQKKRFVIPASLL-SQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 32 vpkG~~aVyVG~~e~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
.....+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|-.|...|.+||..+..
T Consensus 32 ~~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 32 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95 (140)
T ss_dssp TCCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhc
Confidence 356789999995 9999987765 3332 2343344444455556899999999999999987753
No 5
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=49.61 E-value=13 Score=24.96 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=44.3
Q ss_pred CCceEEEEecCCCeeEEEEeccCCC-cHHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 33 PKGYLAVYVGESQKKRFVIPASLLS-QPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
....+.+-||. .||.+..+-|. +|- .+|..++...-++.+.|.+-|-.+...|.+||..+..
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~ 73 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhc
Confidence 45788999995 99999887653 332 2343344444455556899999999999999987753
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=47.28 E-value=30 Score=21.42 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=37.2
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceeee---CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTIP---CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~iP---C~~~~F~~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 4566674 6777777776 578999998765 2 3 578888 7899999998765
No 7
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=44.96 E-value=39 Score=20.46 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=37.9
Q ss_pred EEEEecC-CCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceeee-CcHHHHHHHHHhh
Q 039405 37 LAVYVGE-SQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTIP-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~-~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~iP-C~~~~F~~vl~~l 97 (100)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..+.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHH
Confidence 4566664 2358888888887 68999999975433322 468887 6889999998765
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=43.28 E-value=32 Score=21.66 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=39.5
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceee-e-CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTI-P-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~i-P-C~~~~F~~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 4566664 6777777777 689999999876555 23 68999 4 7889999998765
No 9
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=43.16 E-value=62 Score=20.53 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=42.8
Q ss_pred CceEEEEecCCCeeEEEEeccCCC-cH--HHHHHHHhhhhhcC--CccCCCceeeeCcHHHHHHHHHhhc
Q 039405 34 KGYLAVYVGESQKKRFVIPASLLS-QP--SFQELLSKAEDEFG--FNHPMGGLTIPCREDTFINLTSSLS 98 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~iPC~~~~F~~vl~~l~ 98 (100)
...+.+-||. ++|.+..+-|. +| .|..|... ..++. .+.+ |.+-|-.+...|.+|+..+.
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~~-~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDET-GAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCTT-SCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCCC-ceEEecCChHHHHHHHHHhC
Confidence 3578889995 89999987764 44 46666432 22332 2333 88999999999999998765
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=42.43 E-value=2.8 Score=27.70 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.5
Q ss_pred cCCCcHHHHHH
Q 039405 54 SLLSQPSFQEL 64 (100)
Q Consensus 54 ~~L~hP~F~~L 64 (100)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 49999998544
No 11
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=40.36 E-value=9.2 Score=23.71 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=18.5
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 039405 54 SLLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 12
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=36.80 E-value=12 Score=24.40 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.7
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 039405 54 SLLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 13
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=36.40 E-value=60 Score=20.47 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=37.3
Q ss_pred EEEEecCCCeeEEEEeccCCC--cHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLLS--QPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l 97 (100)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 5666774 67777655554 68899998875 23 689997 8999999998765
No 14
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=35.74 E-value=8.1 Score=23.91 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.3
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 039405 54 SLLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 15
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=34.49 E-value=10 Score=23.47 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 039405 54 SLLSQPSFQELLSKAEDEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 16
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=34.44 E-value=9.1 Score=24.79 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=37.4
Q ss_pred EEEEecCCCeeEEEEeccCC-CcHHHHHHHHhhhhhcCCccCCCceeeeCcHHHHHHHHHhhcc
Q 039405 37 LAVYVGESQKKRFVIPASLL-SQPSFQELLSKAEDEFGFNHPMGGLTIPCREDTFINLTSSLSA 99 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~iPC~~~~F~~vl~~l~~ 99 (100)
+.+-||. .||.+..+-| ++|- .+|..++...-++.+.|.+-|-.+...|.+||..+..
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~ 60 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhc
Confidence 4566774 8888876654 2331 1232333333344445899999999999999987753
No 17
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=34.16 E-value=59 Score=25.24 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=40.6
Q ss_pred CCCceEEEEecCCCeeEEEEeccCCCcHH---HHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhccC
Q 039405 32 VPKGYLAVYVGESQKKRFVIPASLLSQPS---FQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSAN 100 (100)
Q Consensus 32 vpkG~~aVyVG~~e~~RfvVp~~~L~hP~---F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~~ 100 (100)
.+.|...|.||+ .|. ...--.++.||.|+... .+.+| ++.+.+...+..|+.+
T Consensus 52 ~~P~LavIlVG~--------------dpaS~~Yv~~K~k~c~~vGi~s~--~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 52 RTPILATILVGD--------------DGASATYVRMKGNACRRVGMDSL--KIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp CCCEEEEEEESC--------------CHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEeCC--------------CHHHHHHHHHHHHHHHHcCCeEE--EEecCccCCHHHHHHHHHHhcCC
Confidence 456899999998 333 34567789999999875 67787 7788888888888753
No 18
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=29.81 E-value=18 Score=25.40 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.6
Q ss_pred CeeEEEEeccCCCcH---HHHHHHHhhhhhcC
Q 039405 45 QKKRFVIPASLLSQP---SFQELLSKAEDEFG 73 (100)
Q Consensus 45 e~~RfvVp~~~L~hP---~F~~LL~~aeEEfG 73 (100)
+++=|-||+.-|+|= .-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 678899999988874 58999999999998
No 19
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.67 E-value=6.1 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=9.1
Q ss_pred CCCCCceEEEEecCCCeeEEEEeccCCCcHHHHHH
Q 039405 30 KDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQEL 64 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~L 64 (100)
.-||+|..---+.. | .|||||.|.-|
T Consensus 13 ~~~~~~~~~~~ms~-E--------~YLNHPTFGLL 38 (112)
T 3n5b_B 13 GLVPRGSHMNPENS-E--------TYINHPTWGLL 38 (112)
T ss_dssp -------------C-C--------CEEEETTTEEE
T ss_pred CcccCCccCCCcch-h--------hhccCCccchh
Confidence 45677755433332 2 39999998544
No 20
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=29.38 E-value=1.1e+02 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.6
Q ss_pred CeeEEEEeccCCCcHHHHHHHHhhhhhcCCcc
Q 039405 45 QKKRFVIPASLLSQPSFQELLSKAEDEFGFNH 76 (100)
Q Consensus 45 e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 76 (100)
+-.|+-||. ...|++|.++-.+-|++..
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 678888887 4689999999999999853
No 21
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=28.97 E-value=58 Score=20.99 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHhhh------hhcCCccCCCceeee--CcHHHHHHHHHhhc
Q 039405 56 LSQPSFQELLSKAE------DEFGFNHPMGGLTIP--CREDTFINLTSSLS 98 (100)
Q Consensus 56 L~hP~F~~LL~~ae------EEfG~~~~~G~L~iP--C~~~~F~~vl~~l~ 98 (100)
+++|.|++=+...+ +..||....+.|++| +++...+++...|.
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 67888888665432 357999777889998 66677776665553
No 22
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=27.84 E-value=1e+02 Score=18.88 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=36.5
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceeee-CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTIP-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~iP-C~~~~F~~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ... ..+.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHHHH
Confidence 4566664 6777777766 479999999754333 122 578888 6889999998765
No 23
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=27.09 E-value=1e+02 Score=19.09 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=36.0
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceeee-CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTIP-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~iP-C~~~~F~~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++... . + +.|.|| .+.+.|+.++..+
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 4556664 6777776666 478999998753 2 3 579998 6688999988765
No 24
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=26.72 E-value=5.2 Score=30.30 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred CCCCCceEEEEecCCCeeEEEEeccCCCcHHHH
Q 039405 30 KDVPKGYLAVYVGESQKKRFVIPASLLSQPSFQ 62 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~ 62 (100)
..+|+||+|+.-.- ..-| +=-+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l-rG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL-RGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc-chHH--HHHHHHCCcccc
Confidence 46899999986522 1112 455788898884
No 25
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=26.53 E-value=1.5e+02 Score=22.55 Aligned_cols=51 Identities=8% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCceEEEEecCCCeeEEEEeccCCCcHH---HHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 32 VPKGYLAVYVGESQKKRFVIPASLLSQPS---FQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 32 vpkG~~aVyVG~~e~~RfvVp~~~L~hP~---F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
.+.|...|.||+ .|. ...--.++.||.|+ .. .+.+| ++.+.+...+..|+.
T Consensus 26 ~~P~Lavilvg~--------------dpaS~~Yv~~k~k~~~~~Gi-~~--~~~lp~~~s~~ell~~I~~lN~ 81 (276)
T 3ngx_A 26 LEPSLKLIQIGD--------------NEAASIYARAKIRRGKKIGI-AV--DLEKYDDISMKDLLKRIDDLAK 81 (276)
T ss_dssp CCCEEEEEEESC--------------CHHHHHHHHHHHHHHHHHTC-EE--EEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCC--------------CHHHHHHHHHHHHHHHHCCe-EE--EEECCCCCCHHHHHHHHHHHcC
Confidence 345899999998 333 55677889999999 65 68888 778888888887764
No 26
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=26.15 E-value=22 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHhhhhhc
Q 039405 56 LSQPSFQELLSKAEDEF 72 (100)
Q Consensus 56 L~hP~F~~LL~~aeEEf 72 (100)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677899999998887
No 27
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=25.12 E-value=1.4e+02 Score=22.88 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=39.9
Q ss_pred CCCceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhhcc
Q 039405 32 VPKGYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSLSA 99 (100)
Q Consensus 32 vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l~~ 99 (100)
.+.|...|.||+ +. ..-....--.++.+|.|++.. .+.+| ++.+.+...+..|+.
T Consensus 36 ~~P~Lavilvg~-dp----------aS~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 92 (300)
T 4a26_A 36 RVPGLASIIVGQ-RM----------DSKKYVQLKHKAAAEVGMASF--NVELPEDISQEVLEVNVEKLNN 92 (300)
T ss_dssp CCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHTTCEEE--EEEECTTCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHhcC
Confidence 455899999998 21 012345567788999999875 67786 778888888887764
No 28
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=24.72 E-value=79 Score=19.66 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.0
Q ss_pred EEEEecCCCeeEEEEeccCCC--cHHHHHHHHhhhhhcCCccCCCceeee--CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLLS--QPSFQELLSKAEDEFGFNHPMGGLTIP--CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~iP--C~~~~F~~vl~~l 97 (100)
+.+.||. ++|-+.-..|. .|.|++++.....| . ..+.+| .+.+.|+.++..+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 4566764 56776666554 68899998765333 2 578887 7999999998765
No 29
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=24.38 E-value=43 Score=17.48 Aligned_cols=13 Identities=54% Similarity=0.933 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhcC
Q 039405 61 FQELLSKAEDEFG 73 (100)
Q Consensus 61 F~~LL~~aeEEfG 73 (100)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4578888899998
No 30
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=24.22 E-value=18 Score=24.84 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=17.9
Q ss_pred CCceEEEEecCCCeeEEE----------EeccCCCcHHHH
Q 039405 33 PKGYLAVYVGESQKKRFV----------IPASLLSQPSFQ 62 (100)
Q Consensus 33 pkG~~aVyVG~~e~~Rfv----------Vp~~~L~hP~F~ 62 (100)
.+||+|+.|-. +-.|+ +|+-+||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 57999999963 55565 688899988754
No 31
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=22.82 E-value=3.6 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=18.9
Q ss_pred CCCCCceEEEEecCCCeeEEEEeccCCCcHHH
Q 039405 30 KDVPKGYLAVYVGESQKKRFVIPASLLSQPSF 61 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~e~~RfvVp~~~L~hP~F 61 (100)
..+|+||+|+.-. -+=.-+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~---lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ---LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC---TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc---cccHHHHHHHHcCccc
Confidence 4689999998642 1222244577888876
No 32
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=21.78 E-value=51 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=25.9
Q ss_pred ceEEEEecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCc
Q 039405 35 GYLAVYVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFN 75 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 75 (100)
-..-|+-|.+ .+..=.=-+.+++|.|++.++++.+.+|++
T Consensus 10 ~~~f~F~GQG-sQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQG-SQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTT-CCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcc-hhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 3556666752 111111123338999999999999999875
No 33
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=21.61 E-value=50 Score=26.91 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCCCceEEEEecC---------CCeeEEEEeccCCCcHHHHHHHHhhhhhcCC
Q 039405 30 KDVPKGYLAVYVGE---------SQKKRFVIPASLLSQPSFQELLSKAEDEFGF 74 (100)
Q Consensus 30 ~~vpkG~~aVyVG~---------~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 74 (100)
...|++++-+.|.| .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 35588888777765 12444443445 8999999999998888764
No 34
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=21.21 E-value=1.7e+02 Score=18.84 Aligned_cols=54 Identities=15% Similarity=0.346 Sum_probs=38.3
Q ss_pred EEEEecCCCeeEEEEeccCC--CcHHHHHHHHhhhhhcCCccCCCceeee-CcHHHHHHHHHhh
Q 039405 37 LAVYVGESQKKRFVIPASLL--SQPSFQELLSKAEDEFGFNHPMGGLTIP-CREDTFINLTSSL 97 (100)
Q Consensus 37 ~aVyVG~~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~iP-C~~~~F~~vl~~l 97 (100)
+.+.||. ++|-+.-..| ..|.|+.++...-.| ..+ ..+.|| .+.+.|+.++..+
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHH
Confidence 5667774 6788877776 479999999853222 122 578887 6889999998765
No 35
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=20.26 E-value=1.8e+02 Score=18.66 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=38.2
Q ss_pred EecCCCeeEEEEeccCCCcHHHHHHHHhhhhhcCCc--------cCCCceeeeCcHHHHHHHH
Q 039405 40 YVGESQKKRFVIPASLLSQPSFQELLSKAEDEFGFN--------HPMGGLTIPCREDTFINLT 94 (100)
Q Consensus 40 yVG~~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~~G~L~iPC~~~~F~~vl 94 (100)
|-| +.+||.| +++..|.+.+|-.+-..-||++ .++-.++|.-+.+..|.+-
T Consensus 13 f~g--e~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 13 FKN--EIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp ETT--EEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred EcC--CeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHHHH
Confidence 445 5788865 7889999999999999999953 3445788888776666554
Done!