BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039407
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/363 (61%), Positives = 267/363 (73%), Gaps = 2/363 (0%)
Query: 33 LANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRD 92
NGL TP MGWNSWNHF+ INE II+ ADALV++GLAKLGY YVNIDDCW E RD
Sbjct: 1 FENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
Query: 93 EKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFA 152
+GN TFPSGIKALADYVH KGLKLGIYS AG TCS +MPGSL +E+QD KTFA
Sbjct: 61 SQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFA 120
Query: 153 SWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWGDMHPALWGDKVGNSW 212
SWGVDYLKYDNC + G M+RY M+ A+ G+ I++SLCEWG +PA W ++GNSW
Sbjct: 121 SWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSW 180
Query: 213 RTTGDIEDTWDSMISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAIS 272
RTTGDI D W SM SRADEN+ +A YA PGGWNDPDMLEVGNGGM++ EY HFSIWA++
Sbjct: 181 RTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALA 240
Query: 273 KAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEGDQEVWAAPLSGYRIA 332
KAPLL+GCDVR+M+ T I+ N EVIAVNQD LG+Q KKV+ + EVWA PLS R A
Sbjct: 241 KAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKA 300
Query: 333 LLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYI 392
++L NR ++ +TA W +IG+ + V ARDLW H + Q G +SA V H CKMY+
Sbjct: 301 VVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQ--GQISASVAPHDCKMYV 358
Query: 393 LKP 395
L P
Sbjct: 359 LTP 361
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 320 bits (820), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 175/387 (45%), Positives = 236/387 (60%), Gaps = 33/387 (8%)
Query: 35 NGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK 94
NGLA TP MGWN+WN + N++E +I AA A+ SSGL LGY YV IDDCW + +R+
Sbjct: 3 NGLAITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESS 62
Query: 95 GNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASW 154
L A T FP GIK L D +H GLK GIYSSAG TC + SLGYED DAKT+A W
Sbjct: 63 KTLLADPTKFPRGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHI-ASLGYEDIDAKTWAKW 121
Query: 155 GVDYLKYDNCYNDGSK-----PMDRYPVMTRALMNTGRPIYYSLCEWGDMHPALWGDKVG 209
G+DYLKYDNCYN G DRY M AL TGRP+ YSLC WG+ P + +
Sbjct: 122 GIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFASTIS 181
Query: 210 NSWRTTGDIEDTWD--------------------SMISRADENEAFAKYARPGGWNDPDM 249
NSWR +GD+ D ++ S+++ ++ A ++ AR GGWND DM
Sbjct: 182 NSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDM 241
Query: 250 LEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQ 309
LEVGNGGM ++EY VH++IWA K+PL+LG DV N+T+ T EI+ NKEVIAVNQD
Sbjct: 242 LEVGNGGMNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKEVIAVNQDSSFSP 301
Query: 310 AKKVRWEGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDI------GIPPNSVVEAR 363
A ++ +GDQ++++ L+ ++L+N G +TA W+DI + + +E R
Sbjct: 302 ANRIWVKGDQQLFSGNLANNTQVVILLNAGDSAAKMTATWDDIWVYNLPNVDSSRSIEVR 361
Query: 364 DLWEHKTLTKQFVGNLSAMVGSHACKM 390
DLW+ K+L F +++ V +H ++
Sbjct: 362 DLWKQKSL-GNFSNHITLDVPAHGVRL 387
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 214/390 (54%), Gaps = 31/390 (7%)
Query: 33 LANGLAETPAMGWNSWNHFWGNIN----------EDIIKAAADALVSSGLAKLGYIYVNI 82
L NGLA TP MGW +W F N+N E + AD + G +LGY Y+NI
Sbjct: 1 LENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINI 60
Query: 83 DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLG 142
DDCW + RD +G L FP GIKALADYVH +GLKLGIY G TC +L
Sbjct: 61 DDCWAAKQRDAEGRLVPDPERFPRGIKALADYVHARGLKLGIYGDLGRLTCGGYPGTTLD 120
Query: 143 YEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEW----GD 198
+QDA+TFA WGVD LK D CY+ G + YP M RAL TGRPI YS C W G
Sbjct: 121 RVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYS-CSWPAYQGG 179
Query: 199 MHP----ALWGDKVGNSWRTTGDIEDTWDSMISRAD----ENEAFAKYARPGGWNDPDML 250
+ P L G+ + N WR DI+D+WDS++S D + +A PG WNDPDML
Sbjct: 180 LPPKVNYTLLGE-ICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDML 238
Query: 251 EVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQA 310
+GN G++ ++ ++W I APLL+ D+R ++ +I+ N+ +I +NQDPLGIQ
Sbjct: 239 IIGNFGLSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQNRLMIQINQDPLGIQG 298
Query: 311 KKVRWEGDQ-EVWAAPLSGYRIALLLVNRG---PWRYAVTAKWEDIGIPPNSVVEARDLW 366
+++ EG EV+ PLS AL+ +R P+RY T +G P + E +D++
Sbjct: 299 RRIIKEGSHIEVFLRPLSQAASALVFFSRRTDMPFRY--TTSLAKLGFPMGAAYEVQDVY 356
Query: 367 EHKTLTKQFVG-NLSAMVGSHACKMYILKP 395
K ++ G N + ++ M+ L P
Sbjct: 357 SGKIISGLKTGDNFTVIINPSGVVMWYLCP 386
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 193/340 (56%), Gaps = 27/340 (7%)
Query: 33 LANGLAETPAMGWNSWNHFWGN----------INEDIIKAAADALVSSGLAKLGYIYVNI 82
L NGLA TP MGW W F N I+E + A+ +VS G GY Y+ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 83 DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLG 142
DDCW RD +G LQA FP GI+ LA+YVH KGLKLGIY+ G TC+ PGS G
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFG 119
Query: 143 YEDQDAKTFASWGVDYLKYDNCYNDGSKPM-DRYPVMTRALMNTGRPIYYSLCEWG-DMH 200
Y D DA+TFA WGVD LK+D CY D + + D Y M+ AL TGR I YS CEW M
Sbjct: 120 YYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEWPLYMW 178
Query: 201 PALWGD-----KVGNSWRTTGDIEDTWDSMISRAD----ENEAFAKYARPGGWNDPDMLE 251
P + + N WR DI+D+W S+ S D E A PGGWNDPDML
Sbjct: 179 PFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLV 238
Query: 252 VGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAK 311
+GN G++ ++ + ++WAI APL + D+R+++ ++ +K+VIA+NQDPLG Q
Sbjct: 239 IGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGY 298
Query: 312 KVRWEGDQEVWAAPLSGYRIALLLVNR----GPWRYAVTA 347
++R + EVW PLSG A+ ++NR GP Y +
Sbjct: 299 QLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAV 338
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 193/344 (56%), Gaps = 35/344 (10%)
Query: 33 LANGLAETPAMGWNSWNHFWGN----------INEDIIKAAADALVSSGLAKLGYIYVNI 82
L NGLA TP MGW W F N I+E + A+ +VS G GY Y+ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 83 DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLG 142
DDCW RD +G LQA FP GI+ LA+YVH KGLKLGIY+ G TC+ PGS G
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFG 119
Query: 143 YEDQDAKTFASWGVDYLKYDNCYNDGSKPM-DRYPVMTRALMNTGRPIYYSLCEWGDMHP 201
Y D DA+TFA WGVD LK+D CY D + + D Y M+ AL TGR I YS C W P
Sbjct: 120 YYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CSW----P 174
Query: 202 A-LWG---------DKVGNSWRTTGDIEDTWDSMISRAD----ENEAFAKYARPGGWNDP 247
A +W + N WR DI+D+W S+ S D E A PGGWNDP
Sbjct: 175 AYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDP 234
Query: 248 DMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLG 307
DML +GN G++ ++ + ++WAI APL + D+R+++ ++ +K+VIA+NQDPLG
Sbjct: 235 DMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLG 294
Query: 308 IQAKKVRWEGDQEVWAAPLSGYRIALLLVNR----GPWRYAVTA 347
Q ++R + EVW PLSG A+ ++NR GP Y +
Sbjct: 295 KQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAV 338
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 192/340 (56%), Gaps = 27/340 (7%)
Query: 33 LANGLAETPAMGWNSWNHFWGN----------INEDIIKAAADALVSSGLAKLGYIYVNI 82
L NGLA TP MGW W F N I+E + A+ +VS G GY Y+ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 83 DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLG 142
DDCW RD +G LQA FP GI+ LA+YVH KGLKLGIY+ G TC+ PGS G
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFG 119
Query: 143 YEDQDAKTFASWGVDYLKYDNCYNDGSKPM-DRYPVMTRALMNTGRPIYYSLCEWG-DMH 200
Y D DA+TFA WGVD LK+ CY D + + D Y M+ AL TGR I YS CEW M
Sbjct: 120 YYDIDAQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEWPLYMW 178
Query: 201 PALWGD-----KVGNSWRTTGDIEDTWDSMISRAD----ENEAFAKYARPGGWNDPDMLE 251
P + + N WR DI+D+W S+ S D E A PGGWNDPDML
Sbjct: 179 PFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLV 238
Query: 252 VGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAK 311
+GN G++ ++ + ++WAI APL + D+R+++ ++ +K+VIA+NQDPLG Q
Sbjct: 239 IGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGY 298
Query: 312 KVRWEGDQEVWAAPLSGYRIALLLVNR----GPWRYAVTA 347
++R + EVW PLSG A+ ++NR GP Y +
Sbjct: 299 QLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAV 338
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 200/380 (52%), Gaps = 46/380 (12%)
Query: 35 NGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK 94
NGL TP MGW++WN F +++E ++ AD + GL +GY Y+ +DDCW RD
Sbjct: 24 NGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCW-SSGRDSD 82
Query: 95 GNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASW 154
G L A FP+G+ +AD++H G+YSSAG YTC+ PGSLG E++DA+ FA+
Sbjct: 83 GFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANN 141
Query: 155 GVDYLKYDNCYNDGSK-----PMDRYPVMTRALMNTGRPIYYSLCEWGDMHPALWGDKVG 209
VDYLKYDNCYN G RY M+ AL TGRP++YSLC WG WG +
Sbjct: 142 RVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIA 201
Query: 210 NSWRTTGDIEDTWDSMISRA--DENEAFAKYAR--------------------PGGWNDP 247
NSWR +GD+ + SR D +E KYA GGWND
Sbjct: 202 NSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDL 261
Query: 248 DMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLG 307
D LEVG G +T DE HFS+WA+ K+PL++G +V N+ + I VIA+NQD G
Sbjct: 262 DNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNG 321
Query: 308 IQAKKV-RW---------EGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPN 357
I A +V R+ +G+ ++W+ PL + L+N G + E+I N
Sbjct: 322 IPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSN 381
Query: 358 -------SVVEARDLWEHKT 370
S + DLW ++
Sbjct: 382 LGSKKLTSTWDIYDLWANRV 401
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 199/380 (52%), Gaps = 46/380 (12%)
Query: 35 NGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK 94
NGL TP MGW++WN F +++E ++ AD + GL +GY Y+ +DDCW RD
Sbjct: 24 NGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCW-SSGRDSD 82
Query: 95 GNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASW 154
G L A FP+G+ +AD++H G+YSSAG YTC+ PGSLG E++DA+ FA+
Sbjct: 83 GFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANN 141
Query: 155 GVDYLKYDNCYNDGSK-----PMDRYPVMTRALMNTGRPIYYSLCEWGDMHPALWGDKVG 209
VDYLKY NCYN G RY M+ AL TGRP++YSLC WG WG +
Sbjct: 142 RVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIA 201
Query: 210 NSWRTTGDIEDTWDSMISRA--DENEAFAKYAR--------------------PGGWNDP 247
NSWR +GD+ + SR D +E KYA GGWND
Sbjct: 202 NSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDL 261
Query: 248 DMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLG 307
D LEVG G +T DE HFS+WA+ K+PL++G +V N+ + I VIA+NQD G
Sbjct: 262 DNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAINQDSNG 321
Query: 308 IQAKKV-RW---------EGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPN 357
I A +V R+ +G+ ++W+ PL + L+N G + E+I N
Sbjct: 322 IPATRVWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGSVSRPMNTTLEEIFFDSN 381
Query: 358 -------SVVEARDLWEHKT 370
S + DLW ++
Sbjct: 382 LGSKKLTSTWDIYDLWANRV 401
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 197/405 (48%), Gaps = 54/405 (13%)
Query: 39 ETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQ 98
+ P++GWNSWN + +I+E +AA+ +VSSGL GY YVNIDDCW +D G++
Sbjct: 10 KVPSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIA 69
Query: 99 ARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDY 158
T FP GI LA VH GLKLGIYS+AG TC+ P SLGYED DA FA WGVDY
Sbjct: 70 PNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAG-YPASLGYEDVDAADFADWGVDY 128
Query: 159 LKYDNC--------------------------------------YN-DGSKPMDRYPVMT 179
LKYDNC Y+ SK +R+ M
Sbjct: 129 LKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMR 188
Query: 180 RALMNTGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADENEAFAKYA 239
AL I S+C WG WG+ G SWR + DI W S+ + N
Sbjct: 189 NALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFKLNSV 248
Query: 240 RPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVI 299
G ND DMLEVGNG +T E HF++WA K+PLL+G D+ ++ + + ++ NK ++
Sbjct: 249 DFWGHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKHLL 308
Query: 300 AVNQDPL-GIQAKKVRWEGD----------QEVWAAPLSGYRIALLLVNRGPWRYAVTAK 348
A NQD + G A +W + E WA P S + +L+VN AK
Sbjct: 309 AFNQDSVYGQPATPYKWGINPDWTFNVTYPAEFWAGPSSKGHL-VLMVNTLDITATKEAK 367
Query: 349 WEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYIL 393
W +I E RD+W K L + + A V +H + ++
Sbjct: 368 WNEIPGLSAGHYEVRDVWSDKDL--GCLSSYKAAVAAHDTAVILV 410
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 200/389 (51%), Gaps = 28/389 (7%)
Query: 33 LANGLAETPAMGWNSWNHFWGNIN----------EDIIKAAADALVSSGLAKLGYIYVNI 82
L NGL +TP MGW +W F NIN E + AD + G +GY Y+NI
Sbjct: 1 LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNI 60
Query: 83 DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLG 142
DDCW RD G L FP GI LADYVH GLKLGIY+ G +TC +L
Sbjct: 61 DDCW-IGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLD 119
Query: 143 YEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEW----GD 198
QDA+TFA W VD LK D C++ + YP M AL TGRPI +S C W G
Sbjct: 120 KVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFS-CSWPAYEGG 178
Query: 199 MHP----ALWGDKVGNSWRTTGDIEDTWDSMIS----RADENEAFAKYARPGGWNDPDML 250
+ P +L D + N WR DI+D+W S++S + + A PG WNDPDML
Sbjct: 179 LPPRVQYSLLAD-ICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDML 237
Query: 251 EVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQA 310
+GN G++ ++ ++W + APLL+ D+R ++ ++I+ N +I +NQDPLGIQ
Sbjct: 238 LIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQG 297
Query: 311 KKVRWEGDQ-EVWAAPLSGYRIALLLVN-RGPWRYAVTAKWEDIGIPPNSVVEARDLWEH 368
+++ E EV+ PLS AL+ + R Y + + + + EA+D++
Sbjct: 298 RRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSG 357
Query: 369 KTLT-KQFVGNLSAMVGSHACKMYILKPI 396
++ + N + ++ M+ L PI
Sbjct: 358 DIISGLRDETNFTVIINPSGVVMWYLYPI 386
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 185/357 (51%), Gaps = 24/357 (6%)
Query: 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNT 102
MGW SWN F I+ +IK DA V++GL GY Y+NID+ W + RD GN+
Sbjct: 14 MGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSAGNITVDTA 73
Query: 103 TFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMP---------GSLGYEDQDAKTFAS 153
+P G+ A+ Y+H KGLK GIY+ AG C P GS G+ DQD F++
Sbjct: 74 EWPGGMSAITAYIHSKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQFST 133
Query: 154 WGVDYLKYDNCYND--GSKPMDRYPVMT----RALMNTGRPIYYSLCEWGDMHPALWGDK 207
WG D++K D C D G Y ++ RA TGRP+ S+C WG +P W
Sbjct: 134 WGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPWNWAAG 193
Query: 208 VGNSWRTTGDI-----EDTWDSMISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEY 262
WRT+ DI + + S++S D+ G +NDPDML VG G T +
Sbjct: 194 QAPLWRTSTDIIYYGNQPSMTSLLSNFDQ-TLHPTAQHTGYYNDPDMLMVGMDGFTAAQN 252
Query: 263 IVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEGDQ-EV 321
H ++WAIS APLL G D+ MT +T I+ N EVIAV+QD G+Q KV + +
Sbjct: 253 RTHMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGVKVAEDTTGLQA 312
Query: 322 WAAPLSGY-RIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVG 377
+ LSG A++L+NR + +T +W D+G+ N+ RDLW + + G
Sbjct: 313 YGKVLSGTGNRAVVLLNRTSAAHDITVRWSDLGL-TNASATVRDLWARQNVGTSATG 368
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 159/403 (39%), Gaps = 74/403 (18%)
Query: 38 AETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD------- 90
A TP GWNSW+ + ++ E+ + A+ ++ L K G+ Y+ +D W E
Sbjct: 9 ALTPPXGWNSWDCYGASVTEEEVLGNAE-YXANHLKKYGWEYIVVDIQWYEPTANSSAYN 67
Query: 91 ------RDEKGNLQARNTTFPS-----GIKALADYVHGKGLKLGIYSSAGY--------- 130
DE G L FPS G K L+D +H GLK GI+ G
Sbjct: 68 PFAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYENS 127
Query: 131 -------------------------YTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165
Y G+ Y + + +A WGVD++K D+
Sbjct: 128 PVLGSTKTAREIAHTNSICPWNTDXYGVDPTKEGAQSYYNSLFELYAQWGVDFVKVDDIA 187
Query: 166 NDG--SKPMDRYPVMTRALMNTGRPIYYSLCEW-GDMHPALWGDKVGNSWRTTGDIEDTW 222
++ + RA+ GRP SL + A N WR T D D W
Sbjct: 188 ASRLYDTHLEEIKXIQRAIQACGRPXVLSLSPGPAPIKYAHHFKTNANXWRITDDFWDDW 247
Query: 223 DSMISRADENEAFAKYARPGGWNDPDMLEVGNGGM--------------TKDEYIVHFSI 268
+ + E + K+ G W D L +G+ G+ TKDE + ++
Sbjct: 248 SLLYQXFERCEVWEKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWTRFTKDEQLTXXNL 307
Query: 269 WAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEGDQEVWAAPLSG 328
WAI +PL G ++R+ + TL ++ N+ ++++NQ + + V E D+ WAA
Sbjct: 308 WAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQK--SVLNRFVYREEDKVAWAANGRN 365
Query: 329 YRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTL 371
+ L N + + + + +GI V+ ++W+ L
Sbjct: 366 GEAYVALFNLHDQQKTLQFRLDXVGI--XETVQLFNVWDRSFL 406
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 46 NSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNT 102
N+W + + NED +K D KLG +DD W G +D D G+ +
Sbjct: 338 NNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKK 392
Query: 103 TFPSGIKALADYVHGKGLKLGI 124
FP+G+ ADYVH +GLK G+
Sbjct: 393 KFPNGLGHFADYVHEQGLKFGL 414
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 46 NSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNT 102
N+W + + NED +K D KLG +DD W G +D D G+ +
Sbjct: 338 NNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKK 392
Query: 103 TFPSGIKALADYVHGKGLKLGI 124
FP+G+ ADYVH +GLK G+
Sbjct: 393 KFPNGLGHFADYVHEQGLKFGL 414
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 17 ADDKLNHNNQ---PLRRNLLANGL---AETPAMGWNSWNHFWGNINED-IIKAAADALVS 69
+D LN +Q L R LA G E P + N+W + + NE+ I+ A A
Sbjct: 300 SDQGLNGMSQTYHELYRTRLARGAFRDRERPIL-INNWEATYFDFNEEKIVNIARTA--- 355
Query: 70 SGLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNTTFPSGIKALADYVHGKGLKLGI 124
A+LG V +DD W GE+D D + G+ P+G+ LA V+ GL+ G+
Sbjct: 356 ---AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGL 410
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 17 ADDKLNHNNQ---PLRRNLLANGL---AETPAMGWNSWNHFWGNINEDIIKAAADALVSS 70
+D LN +Q L R LA G E P + N+W + + NE+ I ++
Sbjct: 300 SDQGLNGMSQTYHELYRTRLARGAFRDRERPIL-INNWEATYFDFNEEKI-----VNIAR 353
Query: 71 GLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNTTFPSGIKALADYVHGKGLKLGI 124
A+LG V +DD W GE+D D + G+ P+G+ LA V+ GL+ G+
Sbjct: 354 TEAELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGL 410
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 17 ADDKLNHNNQ---PLRRNLLANGL---AETPAMGWNSWNHFWGNINEDIIKAAADALVSS 70
+D LN +Q L R LA G E P + N+W + + NE+ I ++
Sbjct: 300 SDQGLNGMSQTYHELYRTRLARGAFRDRERPIL-INNWEATYFDFNEEKI-----VNIAR 353
Query: 71 GLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNTTFPSGIKALADYVHGKGLKLGI 124
A+LG V +DD W GE+D D + G+ P+G+ LA V+ GL+ G+
Sbjct: 354 TEAELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGL 410
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 17 ADDKLNHNNQ---PLRRNLLANGL---AETPAMGWNSWNHFWGNINEDIIKAAADALVSS 70
+D LN +Q L R LA G E P + N+W + + NE+ I ++
Sbjct: 300 SDQGLNGMSQTYHELYRTRLARGAFRDRERPIL-INNWEATYFDFNEEKI-----VNIAR 353
Query: 71 GLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNTTFPSGIKALADYVHGKGLKLGI 124
A+LG V +DD W GE+D D + G+ P+G+ LA V+ GL+ G+
Sbjct: 354 TEAELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGL 410
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 39 ETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCW-GEQDRDEK--G 95
E P + N+W + + NE A +V+ +LG +DD W G +D D G
Sbjct: 329 ERPVL-INNWEATYFDFNE----AKLXTIVNQA-KRLGIEXFVLDDGWFGHRDDDTTSLG 382
Query: 96 NLQARNTTFPSGIKALADYVHGKGLKLGI 124
+ FP GI+ + VH +G K G+
Sbjct: 383 DWFVDQRKFPDGIEHFSQAVHQQGXKFGL 411
>pdb|3MBF|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Fructose
1,6-Bisphosphate
pdb|3MBD|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Phosphate
pdb|3QRH|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Glyceraldehyde
3-Phosphate
Length = 342
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 96 NLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAK------ 149
N + T SG+ L + + KG+++GI G ++ S+G ED D +
Sbjct: 77 NQETFEQTSGSGV-PLTELLKKKGIEIGIKLDKGLIDYKEKEKISVGLEDLDLRCKSSAF 135
Query: 150 ---TFASWGVDYLKYD-----NCYNDGSKPMDRYPVMTR 180
TFA W + YD +C N+ + +Y ++ +
Sbjct: 136 KDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQ 174
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 46 NSWNHFWGNINED-IIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNL---QARN 101
NSW + + D I+ A +A A LG V +DD W + D+ +L Q
Sbjct: 334 NSWEAAYFDFTGDTIVDLAKEA------ASLGIDMVVMDDGWFGKRNDDNSSLGDWQVNE 387
Query: 102 TTFPSGIKALADYVHGKGLKLGI 124
T + L VH +G+K GI
Sbjct: 388 TKLGGSLAELITRVHEQGMKFGI 410
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 17 ADDKLNHNNQ---PLRRNLLANGL---AETPAMGWNSWNHFWGNINEDIIKAAADALVSS 70
+D LN +Q L R LA G E P + N+W + + NE+ + ++
Sbjct: 300 SDQGLNGMSQTYHELYRTRLARGAFRDRERPIL-INNWEATYFDFNEEKL-----VNIAK 353
Query: 71 GLAKLGYIYVNIDDCW-GEQDRDEK--GNLQARNTTFPSGIKALADYVHGKGLKLGI 124
A+LG +DD W G++D D + G+ P+G+ LA V+ G++ G+
Sbjct: 354 TEAELGIELFVLDDGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQFGL 410
>pdb|1ZTP|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|C Chain C, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|2Q4K|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
Length = 251
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 49 NHFWGNINEDIIKAAADALVSSGLAKLG---YIYVNIDDCWGEQDRDEKGNLQARNTTFP 105
+H W I +++ S AK G I V DD D G L+A +
Sbjct: 140 DHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDF-----TDRLGVLEADSAIRA 194
Query: 106 SGIKALADYVHGKGLKLGIYSSAGYYTC 133
+GIK L Y LGIY + ++ C
Sbjct: 195 AGIKCLLTYKPDVYTYLGIYRANRWHLC 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,650,403
Number of Sequences: 62578
Number of extensions: 627525
Number of successful extensions: 1548
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 31
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)