Query 039407
Match_columns 397
No_of_seqs 152 out of 1570
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02808 alpha-galactosidase 100.0 1E-107 3E-112 806.6 38.0 367 29-396 20-386 (386)
2 PLN02692 alpha-galactosidase 100.0 4E-107 9E-112 805.0 38.7 369 29-397 44-412 (412)
3 PLN02229 alpha-galactosidase 100.0 9E-107 2E-111 805.7 38.1 367 29-396 51-420 (427)
4 KOG2366 Alpha-D-galactosidase 100.0 1.6E-90 3.5E-95 663.0 24.4 366 30-396 22-412 (414)
5 PLN02899 alpha-galactosidase 100.0 4.2E-82 9.1E-87 643.1 33.4 365 27-395 17-632 (633)
6 PLN03231 putative alpha-galact 100.0 5.2E-79 1.1E-83 596.9 23.1 266 41-308 1-352 (357)
7 PF02065 Melibiase: Melibiase; 100.0 9.2E-39 2E-43 319.7 17.4 308 35-356 35-393 (394)
8 PLN02219 probable galactinol-- 100.0 3.8E-28 8.2E-33 252.6 28.4 344 38-396 191-654 (775)
9 PLN02355 probable galactinol-- 100.0 3.2E-27 6.9E-32 246.2 29.1 342 39-396 196-662 (758)
10 PLN02684 Probable galactinol-- 99.9 6.4E-26 1.4E-30 235.8 28.2 338 43-396 204-654 (750)
11 PLN02711 Probable galactinol-- 99.9 1.9E-25 4.1E-30 232.6 27.9 339 43-396 215-684 (777)
12 PF05691 Raffinose_syn: Raffin 99.9 6.1E-25 1.3E-29 230.6 26.7 339 43-396 197-668 (747)
13 COG3345 GalA Alpha-galactosida 99.9 3.7E-26 8E-31 228.5 10.4 177 17-199 263-488 (687)
14 PLN02982 galactinol-raffinose 99.9 1.6E-20 3.5E-25 195.7 24.0 339 43-396 224-769 (865)
15 cd06592 GH31_glucosidase_KIAA1 99.8 4.7E-17 1E-21 159.1 20.3 173 39-230 12-235 (303)
16 cd06593 GH31_xylosidase_YicI Y 99.5 3E-13 6.5E-18 132.6 18.0 165 53-231 19-236 (308)
17 cd06589 GH31 The enzymes of gl 99.4 6E-12 1.3E-16 120.9 17.0 169 37-232 2-199 (265)
18 cd06604 GH31_glucosidase_II_Ma 99.3 1.1E-10 2.3E-15 116.2 17.9 161 55-231 21-249 (339)
19 cd06599 GH31_glycosidase_Aec37 99.3 1.1E-10 2.3E-15 115.1 17.6 166 54-231 25-250 (317)
20 cd06598 GH31_transferase_CtsZ 99.3 2.4E-10 5.2E-15 112.6 17.2 165 55-231 21-243 (317)
21 PRK10658 putative alpha-glucos 99.2 3.8E-10 8.3E-15 120.9 18.2 167 51-231 276-495 (665)
22 cd06601 GH31_lyase_GLase GLase 99.2 9.3E-10 2E-14 108.9 18.8 161 55-231 21-231 (332)
23 cd06600 GH31_MGAM-like This fa 99.2 9.4E-10 2E-14 108.4 18.4 161 55-231 21-227 (317)
24 cd06595 GH31_xylosidase_XylS-l 99.2 7.2E-10 1.6E-14 108.0 16.8 164 55-230 22-223 (292)
25 PF01055 Glyco_hydro_31: Glyco 99.2 1.7E-10 3.8E-15 118.5 13.1 162 55-232 40-266 (441)
26 cd06591 GH31_xylosidase_XylS X 99.2 1.7E-09 3.6E-14 106.7 18.7 163 55-231 21-243 (319)
27 cd06594 GH31_glucosidase_YihQ 99.1 6.2E-09 1.3E-13 102.6 20.0 162 56-230 21-246 (317)
28 cd06597 GH31_transferase_CtsY 99.1 4.6E-09 1E-13 104.4 19.0 166 53-231 19-263 (340)
29 cd06602 GH31_MGAM_SI_GAA This 99.1 5.1E-09 1.1E-13 104.1 18.3 161 55-231 21-231 (339)
30 PF10566 Glyco_hydro_97: Glyco 99.1 8.4E-10 1.8E-14 105.5 10.8 127 54-193 28-155 (273)
31 cd06603 GH31_GANC_GANAB_alpha 99.0 2.5E-08 5.3E-13 99.2 20.2 162 54-231 20-249 (339)
32 COG1501 Alpha-glucosidases, fa 99.0 6.8E-09 1.5E-13 112.5 16.3 172 43-231 266-493 (772)
33 PLN02763 hydrolase, hydrolyzin 98.9 8.1E-08 1.7E-12 105.6 19.2 160 55-230 198-427 (978)
34 PRK10426 alpha-glucosidase; Pr 98.8 1.7E-07 3.7E-12 100.3 17.3 162 56-230 219-443 (635)
35 KOG1065 Maltase glucoamylase a 97.8 0.00011 2.3E-09 79.0 10.4 113 45-165 296-448 (805)
36 cd06596 GH31_CPE1046 CPE1046 i 97.5 0.0012 2.6E-08 62.7 11.7 137 55-231 42-182 (261)
37 PRK14706 glycogen branching en 96.5 0.32 6.9E-06 52.6 20.5 90 72-165 177-309 (639)
38 PRK09441 cytoplasmic alpha-amy 95.9 2.8 6E-05 43.8 23.6 110 273-391 359-478 (479)
39 PRK10785 maltodextrin glucosid 95.8 3.4 7.3E-05 44.5 24.8 134 56-197 177-375 (598)
40 PRK12313 glycogen branching en 95.6 4.3 9.2E-05 44.0 24.4 103 56-164 168-311 (633)
41 TIGR01515 branching_enzym alph 95.2 0.16 3.5E-06 54.7 11.3 100 56-164 154-297 (613)
42 PF08533 Glyco_hydro_42C: Beta 95.0 0.041 8.9E-07 40.2 4.2 49 327-392 9-57 (58)
43 PF02806 Alpha-amylase_C: Alph 94.7 0.45 9.7E-06 37.9 10.0 73 317-394 9-94 (95)
44 PRK14705 glycogen branching en 94.5 5.6 0.00012 46.2 21.6 89 72-164 775-906 (1224)
45 PF10438 Cyc-maltodext_C: Cycl 92.7 0.76 1.6E-05 35.8 7.6 69 316-393 8-78 (78)
46 PF13200 DUF4015: Putative gly 91.8 1.2 2.6E-05 44.0 9.7 101 56-167 11-149 (316)
47 TIGR02456 treS_nterm trehalose 90.8 1.3 2.9E-05 46.9 9.6 69 318-393 469-538 (539)
48 PF09260 DUF1966: Domain of un 89.3 3.3 7.2E-05 33.2 8.5 76 313-391 2-79 (91)
49 TIGR02104 pulA_typeI pullulana 88.2 3.9 8.5E-05 44.1 10.9 88 107-197 230-351 (605)
50 PF02638 DUF187: Glycosyl hydr 87.8 2.5 5.5E-05 41.6 8.4 103 56-165 17-164 (311)
51 TIGR02455 TreS_stutzeri trehal 87.7 3.2 7E-05 44.6 9.5 72 319-396 610-684 (688)
52 COG0296 GlgB 1,4-alpha-glucan 86.9 2.1 4.6E-05 46.0 7.7 101 57-166 164-307 (628)
53 PF14509 GH97_C: Glycosyl-hydr 86.9 8.1 0.00018 31.7 9.6 76 317-395 14-103 (103)
54 TIGR02456 treS_nterm trehalose 86.8 5.5 0.00012 42.3 10.9 54 137-190 172-235 (539)
55 PF01120 Alpha_L_fucos: Alpha- 86.5 5.5 0.00012 39.8 10.1 85 108-193 140-243 (346)
56 smart00812 Alpha_L_fucos Alpha 85.7 9.7 0.00021 38.7 11.5 121 72-197 90-236 (384)
57 TIGR02402 trehalose_TreZ malto 84.6 13 0.00028 39.6 12.4 124 56-188 109-271 (542)
58 PRK12568 glycogen branching en 84.4 11 0.00023 41.6 11.7 89 72-164 279-410 (730)
59 PF07302 AroM: AroM protein; 83.3 17 0.00037 34.0 11.0 122 55-193 67-209 (221)
60 PF11941 DUF3459: Domain of un 82.1 9.4 0.0002 29.6 7.8 53 324-391 37-89 (89)
61 cd02931 ER_like_FMN Enoate red 80.2 7.7 0.00017 39.3 8.3 108 53-163 138-273 (382)
62 PRK05402 glycogen branching en 80.0 19 0.00041 39.8 11.8 89 72-164 275-406 (726)
63 PLN02960 alpha-amylase 79.8 16 0.00034 41.0 10.9 90 72-165 426-559 (897)
64 KOG1066 Glucosidase II catalyt 79.4 11 0.00023 41.0 9.1 90 31-130 344-436 (915)
65 PRK06233 hypothetical protein; 79.0 10 0.00022 38.3 8.7 107 51-165 158-279 (372)
66 cd02803 OYE_like_FMN_family Ol 78.3 25 0.00054 34.5 11.1 104 54-165 130-251 (327)
67 PF01791 DeoC: DeoC/LacD famil 78.3 11 0.00023 35.4 8.1 82 108-192 114-199 (236)
68 PF14488 DUF4434: Domain of un 76.6 8.2 0.00018 34.4 6.5 66 52-129 14-90 (166)
69 TIGR02403 trehalose_treC alpha 76.2 34 0.00074 36.4 12.1 63 56-124 25-93 (543)
70 smart00632 Aamy_C Aamy_C domai 75.8 32 0.0007 26.5 8.9 62 319-391 10-77 (81)
71 cd03465 URO-D_like The URO-D _ 75.6 11 0.00025 36.8 7.9 88 72-192 177-269 (330)
72 PRK10933 trehalose-6-phosphate 74.8 18 0.0004 38.5 9.6 63 319-392 487-549 (551)
73 TIGR02102 pullulan_Gpos pullul 74.0 44 0.00095 38.8 12.8 88 107-197 556-674 (1111)
74 KOG3340 Alpha-L-fucosidase [Ca 73.7 5.3 0.00011 39.4 4.7 57 72-130 111-174 (454)
75 COG1830 FbaB DhnA-type fructos 72.2 29 0.00062 33.4 9.2 78 108-193 132-209 (265)
76 cd02932 OYE_YqiM_FMN Old yello 71.1 16 0.00035 36.2 7.7 102 53-162 142-261 (336)
77 PRK14510 putative bifunctional 71.0 28 0.00062 40.8 10.6 85 107-191 248-371 (1221)
78 cd02875 GH18_chitobiase Chitob 70.9 11 0.00024 37.8 6.6 83 109-194 67-157 (358)
79 PRK06852 aldolase; Validated 70.0 29 0.00064 34.1 9.0 80 108-192 156-236 (304)
80 PF13199 Glyco_hydro_66: Glyco 70.0 41 0.0009 35.9 10.8 236 25-281 87-392 (559)
81 cd02871 GH18_chitinase_D-like 68.9 24 0.00052 34.6 8.3 87 107-193 61-153 (312)
82 PLN02447 1,4-alpha-glucan-bran 68.0 21 0.00045 39.6 8.3 92 72-164 260-392 (758)
83 PRK13523 NADPH dehydrogenase N 67.7 19 0.00041 35.9 7.4 103 53-163 130-248 (337)
84 PRK13398 3-deoxy-7-phosphohept 66.9 38 0.00081 32.6 9.0 104 56-194 39-142 (266)
85 PRK13397 3-deoxy-7-phosphohept 66.1 45 0.00097 31.9 9.2 103 56-193 27-129 (250)
86 cd00598 GH18_chitinase-like Th 65.8 42 0.00092 30.1 8.9 88 107-194 50-147 (210)
87 PLN00196 alpha-amylase; Provis 65.6 16 0.00034 37.8 6.5 69 45-122 33-108 (428)
88 cd02930 DCR_FMN 2,4-dienoyl-Co 65.4 25 0.00055 35.1 7.8 102 53-162 125-244 (353)
89 cd02933 OYE_like_FMN Old yello 65.2 35 0.00077 33.9 8.8 105 53-162 140-261 (338)
90 TIGR01463 mtaA_cmuA methyltran 64.8 24 0.00052 34.8 7.5 90 72-192 189-281 (340)
91 PF05913 DUF871: Bacterial pro 63.4 12 0.00026 37.7 5.0 86 56-166 12-100 (357)
92 cd08607 GDPD_GDE5 Glycerophosp 63.3 13 0.00028 35.9 5.2 43 109-164 248-290 (290)
93 COG1649 Uncharacterized protei 63.1 48 0.001 34.1 9.2 106 54-164 60-208 (418)
94 PRK03705 glycogen debranching 62.8 25 0.00054 38.4 7.7 60 107-166 243-340 (658)
95 PRK08227 autoinducer 2 aldolas 62.2 39 0.00084 32.6 8.0 71 108-193 129-199 (264)
96 cd02931 ER_like_FMN Enoate red 62.0 1.1E+02 0.0023 31.1 11.7 81 40-126 18-103 (382)
97 PLN02361 alpha-amylase 61.9 55 0.0012 33.5 9.5 101 58-166 29-183 (401)
98 TIGR02103 pullul_strch alpha-1 61.7 41 0.00089 38.1 9.2 87 108-197 406-528 (898)
99 cd06542 GH18_EndoS-like Endo-b 60.0 44 0.00096 31.4 8.1 87 107-193 52-150 (255)
100 PF06964 Alpha-L-AF_C: Alpha-L 59.6 41 0.00089 29.8 7.4 27 328-354 103-129 (177)
101 cd04747 OYE_like_5_FMN Old yel 59.0 46 0.001 33.5 8.4 106 53-162 132-255 (361)
102 PRK10605 N-ethylmaleimide redu 58.8 42 0.0009 33.8 8.0 106 53-163 147-270 (362)
103 cd08577 PI-PLCc_GDPD_SF_unchar 58.7 22 0.00048 33.4 5.7 41 108-162 187-227 (228)
104 cd04734 OYE_like_3_FMN Old yel 57.6 42 0.0009 33.5 7.8 102 53-162 129-249 (343)
105 cd06522 GH25_AtlA-like AtlA is 57.1 56 0.0012 29.5 7.9 103 73-192 22-130 (192)
106 cd04735 OYE_like_4_FMN Old yel 56.9 45 0.00097 33.4 7.9 104 53-164 132-257 (353)
107 COG0407 HemE Uroporphyrinogen- 56.7 33 0.00072 34.4 6.8 87 72-188 198-285 (352)
108 cd08555 PI-PLCc_GDPD_SF Cataly 56.3 30 0.00065 30.8 5.9 42 108-163 138-179 (179)
109 cd00465 URO-D_CIMS_like The UR 55.9 20 0.00044 34.6 5.1 90 72-191 153-247 (306)
110 PLN02877 alpha-amylase/limit d 55.8 67 0.0015 36.6 9.6 87 108-197 468-599 (970)
111 TIGR01370 cysRS possible cyste 53.2 89 0.0019 30.9 9.1 131 6-166 11-171 (315)
112 PRK09722 allulose-6-phosphate 51.8 75 0.0016 29.9 8.0 77 108-193 97-197 (229)
113 cd08605 GDPD_GDE5_like_1_plant 51.7 24 0.00053 33.8 4.9 43 109-164 240-282 (282)
114 smart00642 Aamy Alpha-amylase 51.6 55 0.0012 29.0 6.8 66 57-128 18-92 (166)
115 PRK12595 bifunctional 3-deoxy- 51.5 1E+02 0.0022 31.1 9.4 102 56-192 130-231 (360)
116 TIGR03128 RuMP_HxlA 3-hexulose 51.5 1.1E+02 0.0024 27.5 9.1 44 108-164 91-135 (206)
117 cd08580 GDPD_Rv2277c_like Glyc 50.9 40 0.00086 32.4 6.1 41 109-164 219-260 (263)
118 cd08575 GDPD_GDE4_like Glycero 50.0 34 0.00074 32.6 5.5 41 109-164 221-261 (264)
119 TIGR02401 trehalose_TreY malto 49.7 52 0.0011 36.8 7.5 71 51-126 9-85 (825)
120 PF14871 GHL6: Hypothetical gl 49.1 1.4E+02 0.0029 25.6 8.5 57 72-130 9-68 (132)
121 PRK14511 maltooligosyl trehalo 49.1 54 0.0012 36.9 7.5 70 51-126 13-89 (879)
122 KOG3111 D-ribulose-5-phosphate 49.0 20 0.00042 32.9 3.4 24 107-130 100-123 (224)
123 PRK12858 tagatose 1,6-diphosph 48.9 1.4E+02 0.003 29.9 9.8 85 108-192 145-247 (340)
124 TIGR01361 DAHP_synth_Bsub phos 48.7 84 0.0018 30.1 8.0 103 56-193 37-139 (260)
125 PLN02801 beta-amylase 48.6 30 0.00065 36.2 5.1 58 55-123 34-91 (517)
126 cd06414 GH25_LytC-like The Lyt 48.5 13 0.00028 33.7 2.3 68 55-128 67-135 (191)
127 PLN02803 beta-amylase 48.5 30 0.00064 36.5 5.0 57 56-123 105-161 (548)
128 PF00834 Ribul_P_3_epim: Ribul 48.4 33 0.00072 31.6 5.0 31 99-130 86-116 (201)
129 PF00128 Alpha-amylase: Alpha 47.9 26 0.00057 33.1 4.5 124 58-191 4-194 (316)
130 PF11852 DUF3372: Domain of un 47.7 20 0.00044 32.0 3.3 57 330-393 105-166 (168)
131 PF03102 NeuB: NeuB family; I 47.0 62 0.0013 30.7 6.7 41 108-164 58-98 (241)
132 cd08564 GDPD_GsGDE_like Glycer 46.7 39 0.00084 32.1 5.4 45 109-164 213-257 (265)
133 PRK08745 ribulose-phosphate 3- 46.2 1.1E+02 0.0025 28.5 8.3 77 108-193 99-199 (223)
134 PLN00197 beta-amylase; Provisi 46.0 34 0.00074 36.2 5.1 58 55-123 124-181 (573)
135 cd06545 GH18_3CO4_chitinase Th 45.9 74 0.0016 30.0 7.1 86 93-182 35-124 (253)
136 cd08583 PI-PLCc_GDPD_SF_unchar 45.8 50 0.0011 30.7 5.9 42 109-165 195-236 (237)
137 PLN02784 alpha-amylase 45.5 1.6E+02 0.0035 33.3 10.3 60 57-124 520-586 (894)
138 PTZ00170 D-ribulose-5-phosphat 44.9 1.4E+02 0.003 27.9 8.7 74 56-159 17-92 (228)
139 PRK08091 ribulose-phosphate 3- 44.8 1.3E+02 0.0027 28.4 8.3 77 108-193 105-207 (228)
140 PLN02161 beta-amylase 44.8 36 0.00077 35.7 4.9 57 56-123 115-171 (531)
141 PLN02705 beta-amylase 44.1 37 0.00079 36.4 5.0 58 55-123 265-322 (681)
142 PRK09250 fructose-bisphosphate 44.0 1.4E+02 0.003 30.0 8.8 57 108-166 181-241 (348)
143 cd08601 GDPD_SaGlpQ_like Glyce 44.0 55 0.0012 30.8 5.9 41 109-164 208-248 (256)
144 PRK06520 5-methyltetrahydropte 43.9 69 0.0015 32.3 6.9 106 57-165 162-278 (368)
145 COG3669 Alpha-L-fucosidase [Ca 43.3 49 0.0011 33.7 5.5 59 63-128 59-123 (430)
146 cd06416 GH25_Lys1-like Lys-1 i 43.2 14 0.00031 33.5 1.7 22 108-129 112-133 (196)
147 PLN03244 alpha-amylase; Provis 42.8 32 0.00068 38.3 4.4 60 105-164 440-533 (872)
148 PF07488 Glyco_hydro_67M: Glyc 41.8 77 0.0017 31.2 6.4 119 55-186 54-188 (328)
149 PRK15308 putative fimbrial pro 40.7 1.4E+02 0.003 28.3 7.9 64 329-396 33-99 (234)
150 PRK09454 ugpQ cytoplasmic glyc 40.4 69 0.0015 30.1 6.0 41 109-164 199-239 (249)
151 cd08572 GDPD_GDE5_like Glycero 40.0 46 0.001 32.3 4.8 42 109-163 251-292 (293)
152 PF08924 DUF1906: Domain of un 39.9 56 0.0012 28.0 4.8 87 30-125 45-135 (136)
153 PRK06252 methylcobalamin:coenz 39.9 80 0.0017 31.0 6.6 86 72-192 189-279 (339)
154 cd02801 DUS_like_FMN Dihydrour 39.9 2.6E+02 0.0055 25.5 9.7 93 56-164 65-160 (231)
155 cd08581 GDPD_like_1 Glyceropho 39.8 52 0.0011 30.6 5.0 39 110-163 190-228 (229)
156 cd08612 GDPD_GDE4 Glycerophosp 39.7 61 0.0013 31.5 5.6 41 109-164 251-291 (300)
157 PRK08673 3-deoxy-7-phosphohept 39.6 1.9E+02 0.0042 28.8 9.1 103 56-193 105-207 (335)
158 cd06522 GH25_AtlA-like AtlA is 39.3 27 0.00059 31.6 2.9 64 53-128 65-132 (192)
159 cd08606 GDPD_YPL110cp_fungi Gl 39.1 53 0.0012 31.5 5.1 43 109-164 235-277 (286)
160 PLN02905 beta-amylase 38.9 48 0.001 35.7 4.9 58 55-123 283-340 (702)
161 TIGR02100 glgX_debranch glycog 38.8 48 0.001 36.4 5.1 78 107-184 246-365 (688)
162 cd08574 GDPD_GDE_2_3_6 Glycero 38.5 58 0.0013 30.8 5.1 39 109-162 213-251 (252)
163 cd08563 GDPD_TtGDE_like Glycer 38.4 64 0.0014 29.8 5.3 40 109-163 190-229 (230)
164 PRK08255 salicylyl-CoA 5-hydro 38.0 1.2E+02 0.0026 33.7 8.3 101 54-162 540-658 (765)
165 cd08579 GDPD_memb_like Glycero 38.0 63 0.0014 29.6 5.2 40 109-163 180-219 (220)
166 COG2200 Rtn c-di-GMP phosphodi 37.8 95 0.0021 29.4 6.5 74 108-195 138-215 (256)
167 COG0036 Rpe Pentose-5-phosphat 37.8 74 0.0016 29.8 5.5 33 97-130 88-120 (220)
168 cd03311 CIMS_C_terminal_like C 37.8 1.2E+02 0.0026 29.8 7.4 101 57-166 147-252 (332)
169 cd08582 GDPD_like_2 Glyceropho 37.6 69 0.0015 29.6 5.4 41 109-164 191-231 (233)
170 PRK09121 5-methyltetrahydropte 37.4 66 0.0014 32.1 5.5 101 56-165 147-254 (339)
171 cd08556 GDPD Glycerophosphodie 37.3 78 0.0017 27.7 5.5 40 109-163 150-189 (189)
172 cd08562 GDPD_EcUgpQ_like Glyce 37.3 80 0.0017 28.9 5.8 40 109-163 189-228 (229)
173 PF07555 NAGidase: beta-N-acet 36.8 1.5E+02 0.0032 29.2 7.7 104 51-166 8-115 (306)
174 PF13204 DUF4038: Protein of u 36.8 21 0.00046 34.7 1.8 135 42-187 15-178 (289)
175 PLN02411 12-oxophytodienoate r 36.7 1.3E+02 0.0029 30.5 7.7 74 53-129 153-241 (391)
176 KOG2672 Lipoate synthase [Coen 36.6 50 0.0011 32.1 4.2 50 145-195 145-196 (360)
177 cd03310 CIMS_like CIMS - Cobal 36.0 1.3E+02 0.0028 29.2 7.3 72 72-166 160-232 (321)
178 PF01373 Glyco_hydro_14: Glyco 35.8 37 0.00081 34.6 3.4 55 59-124 17-71 (402)
179 TIGR03569 NeuB_NnaB N-acetylne 35.6 1.1E+02 0.0024 30.4 6.7 44 106-165 76-119 (329)
180 cd08610 GDPD_GDE6 Glycerophosp 35.2 74 0.0016 31.4 5.4 42 109-165 235-276 (316)
181 PF05063 MT-A70: MT-A70 ; Int 35.1 73 0.0016 28.3 5.0 68 77-160 1-74 (176)
182 cd04733 OYE_like_2_FMN Old yel 34.9 1.1E+02 0.0023 30.4 6.6 99 55-159 139-253 (338)
183 cd06543 GH18_PF-ChiA-like PF-C 34.1 3.3E+02 0.0073 26.5 9.7 88 107-194 55-145 (294)
184 PRK06769 hypothetical protein; 34.1 69 0.0015 28.3 4.6 25 103-128 29-53 (173)
185 cd00019 AP2Ec AP endonuclease 34.0 3.8E+02 0.0082 25.3 10.1 124 58-195 10-145 (279)
186 cd06416 GH25_Lys1-like Lys-1 i 33.8 1.8E+02 0.0039 26.1 7.5 103 73-192 19-129 (196)
187 cd03309 CmuC_like CmuC_like. P 33.7 1.6E+02 0.0035 29.1 7.6 87 76-192 169-261 (321)
188 COG3469 Chitinase [Carbohydrat 33.4 73 0.0016 30.6 4.7 86 108-194 87-179 (332)
189 cd08609 GDPD_GDE3 Glycerophosp 33.4 77 0.0017 31.3 5.2 41 109-164 235-275 (315)
190 cd08567 GDPD_SpGDE_like Glycer 33.2 83 0.0018 29.5 5.3 41 109-164 221-261 (263)
191 cd06546 GH18_CTS3_chitinase GH 32.7 1.6E+02 0.0035 28.0 7.2 83 108-193 61-148 (256)
192 cd08561 GDPD_cytoplasmic_ScUgp 32.3 95 0.002 29.0 5.5 41 109-164 202-242 (249)
193 PRK05301 pyrroloquinoline quin 32.0 2.2E+02 0.0047 28.5 8.3 80 54-165 45-124 (378)
194 cd08573 GDPD_GDE1 Glycerophosp 31.7 89 0.0019 29.6 5.2 39 109-163 218-257 (258)
195 PRK13396 3-deoxy-7-phosphohept 31.7 2.6E+02 0.0056 28.2 8.6 80 56-164 113-193 (352)
196 cd08604 GDPD_SHV3_repeat_2 Gly 31.6 1.4E+02 0.003 29.1 6.6 53 110-165 241-295 (300)
197 TIGR02109 PQQ_syn_pqqE coenzym 31.2 3.1E+02 0.0067 27.1 9.3 80 54-165 36-115 (358)
198 cd08602 GDPD_ScGlpQ1_like Glyc 30.6 1.3E+02 0.0028 29.5 6.3 52 109-163 256-308 (309)
199 smart00052 EAL Putative diguan 30.5 1.3E+02 0.0029 27.1 6.1 72 108-193 135-210 (241)
200 cd01948 EAL EAL domain. This d 30.4 1.1E+02 0.0023 27.7 5.5 73 108-194 134-210 (240)
201 PF02055 Glyco_hydro_30: O-Gly 30.4 2.1E+02 0.0047 30.1 8.2 85 287-391 402-493 (496)
202 PF04273 DUF442: Putative phos 30.1 3.1E+02 0.0068 22.5 7.7 76 113-197 21-96 (110)
203 PRK14507 putative bifunctional 30.1 1.4E+02 0.003 36.3 7.3 73 51-128 751-829 (1693)
204 cd08560 GDPD_EcGlpQ_like_1 Gly 30.1 1.5E+02 0.0033 29.7 6.8 59 108-166 280-349 (356)
205 TIGR01370 cysRS possible cyste 30.0 3.2E+02 0.0069 27.0 8.8 110 49-167 134-276 (315)
206 PLN02455 fructose-bisphosphate 30.0 90 0.002 31.2 4.9 57 109-166 87-148 (358)
207 TIGR02668 moaA_archaeal probab 29.8 3.5E+02 0.0076 26.0 9.2 77 54-163 39-116 (302)
208 cd00958 DhnA Class I fructose- 29.7 4E+02 0.0087 24.5 9.2 72 108-192 111-185 (235)
209 cd02879 GH18_plant_chitinase_c 29.4 67 0.0014 31.2 4.0 87 108-194 53-156 (299)
210 PRK10933 trehalose-6-phosphate 29.0 2.4E+02 0.0051 30.2 8.4 30 137-166 175-204 (551)
211 COG1856 Uncharacterized homolo 29.0 5.1E+02 0.011 24.6 9.8 108 55-192 39-155 (275)
212 TIGR01668 YqeG_hyp_ppase HAD s 28.9 96 0.0021 27.3 4.6 45 74-128 22-68 (170)
213 COG0731 Fe-S oxidoreductases [ 28.8 3E+02 0.0066 27.0 8.3 116 24-166 10-142 (296)
214 cd08570 GDPD_YPL206cp_fungi Gl 28.5 1.4E+02 0.003 27.7 5.8 40 109-163 194-233 (234)
215 PF11871 DUF3391: Domain of un 28.2 54 0.0012 27.2 2.8 45 120-165 10-58 (128)
216 TIGR02631 xylA_Arthro xylose i 28.1 1.8E+02 0.0039 29.5 6.9 72 119-191 8-86 (382)
217 cd02874 GH18_CFLE_spore_hydrol 27.7 1.7E+02 0.0038 28.3 6.6 75 108-183 47-130 (313)
218 PRK04326 methionine synthase; 27.6 2.2E+02 0.0047 27.9 7.3 68 71-165 169-240 (330)
219 PRK08508 biotin synthase; Prov 27.5 2.1E+02 0.0045 27.5 7.0 80 55-163 40-120 (279)
220 PRK10558 alpha-dehydro-beta-de 27.3 3.2E+02 0.0069 26.0 8.1 49 101-166 3-51 (256)
221 PRK07226 fructose-bisphosphate 27.2 5.4E+02 0.012 24.4 9.8 73 108-193 128-203 (267)
222 COG2894 MinD Septum formation 27.2 62 0.0013 30.6 3.1 26 54-84 96-121 (272)
223 cd08608 GDPD_GDE2 Glycerophosp 27.2 1.5E+02 0.0032 29.8 6.0 42 109-165 213-254 (351)
224 PF00563 EAL: EAL domain; Int 26.9 2.4E+02 0.0052 25.3 7.1 69 110-193 138-210 (236)
225 PF00724 Oxidored_FMN: NADH:fl 26.9 56 0.0012 32.5 3.0 99 55-161 139-255 (341)
226 cd06547 GH85_ENGase Endo-beta- 26.4 1.9E+02 0.0042 28.8 6.7 75 109-183 49-132 (339)
227 PRK08931 5'-methylthioadenosin 26.2 4.8E+02 0.01 25.5 9.2 14 146-159 170-183 (289)
228 cd08559 GDPD_periplasmic_GlpQ_ 25.9 1.1E+02 0.0023 29.8 4.7 49 109-163 246-295 (296)
229 KOG1557 Fructose-biphosphate a 25.5 91 0.002 30.6 3.9 57 109-165 91-151 (363)
230 TIGR01212 radical SAM protein, 25.5 1.8E+02 0.004 28.3 6.3 50 108-164 165-215 (302)
231 cd06523 GH25_PlyB-like PlyB is 25.4 2.8E+02 0.0061 24.6 7.1 103 72-192 18-122 (177)
232 PRK13361 molybdenum cofactor b 25.4 5.2E+02 0.011 25.3 9.6 77 54-163 44-122 (329)
233 COG0678 AHP1 Peroxiredoxin [Po 24.7 1.5E+02 0.0032 26.3 4.8 41 117-161 35-78 (165)
234 PRK05402 glycogen branching en 24.5 2.4E+02 0.0052 31.2 7.6 69 319-394 635-724 (726)
235 cd02930 DCR_FMN 2,4-dienoyl-Co 24.4 7E+02 0.015 24.7 12.0 66 54-125 30-96 (353)
236 COG4288 Uncharacterized protei 24.0 2.2E+02 0.0047 23.6 5.3 18 332-349 32-49 (124)
237 COG0502 BioB Biotin synthase a 23.9 1.4E+02 0.0029 29.9 5.0 91 39-161 61-160 (335)
238 TIGR03586 PseI pseudaminic aci 23.8 2.6E+02 0.0056 27.8 7.0 42 108-165 79-120 (327)
239 COG0854 PdxJ Pyridoxal phospha 23.8 1.9E+02 0.0041 27.3 5.5 85 50-163 67-153 (243)
240 PRK12677 xylose isomerase; Pro 23.2 3.5E+02 0.0075 27.5 7.9 79 116-195 4-89 (384)
241 PF01183 Glyco_hydro_25: Glyco 23.1 90 0.002 27.6 3.4 85 29-128 42-129 (181)
242 cd03174 DRE_TIM_metallolyase D 22.7 5.4E+02 0.012 23.8 8.9 50 107-161 116-165 (265)
243 COG1242 Predicted Fe-S oxidore 22.7 2.5E+02 0.0053 27.5 6.3 78 108-192 170-263 (312)
244 PRK09505 malS alpha-amylase; R 22.6 2.3E+02 0.005 31.2 6.9 64 56-124 228-310 (683)
245 COG3325 ChiA Chitinase [Carboh 22.3 2E+02 0.0044 29.7 5.9 83 141-225 153-260 (441)
246 PF01645 Glu_synthase: Conserv 22.1 4.3E+02 0.0093 26.8 8.2 80 95-186 172-270 (368)
247 PHA02119 hypothetical protein 22.1 82 0.0018 23.9 2.3 26 97-122 44-70 (87)
248 cd08576 GDPD_like_SMaseD_PLD G 21.9 4.5E+02 0.0098 25.3 8.0 45 105-164 190-239 (265)
249 COG3589 Uncharacterized conser 21.7 1.2E+02 0.0027 30.2 4.1 88 58-167 16-103 (360)
250 PLN02227 fructose-bisphosphate 21.5 1.7E+02 0.0036 29.7 5.0 57 109-166 131-192 (399)
251 smart00813 Alpha-L-AF_C Alpha- 21.5 4.1E+02 0.009 23.7 7.4 25 329-353 115-140 (189)
252 PLN02425 probable fructose-bis 21.4 1.7E+02 0.0037 29.6 5.1 57 109-166 122-183 (390)
253 PRK14057 epimerase; Provisiona 21.4 4.9E+02 0.011 24.9 8.1 77 108-193 112-221 (254)
254 cd04469 S1_Hex1 S1_Hex1: Hex1, 21.4 1E+02 0.0022 23.8 2.8 37 77-117 5-42 (75)
255 PRK15108 biotin synthase; Prov 21.3 4.2E+02 0.009 26.4 8.0 79 55-163 76-154 (345)
256 PRK07028 bifunctional hexulose 21.3 4.8E+02 0.01 26.6 8.7 72 108-192 96-168 (430)
257 PRK13813 orotidine 5'-phosphat 21.2 3.1E+02 0.0067 24.9 6.7 49 108-163 95-147 (215)
258 COG3534 AbfA Alpha-L-arabinofu 21.2 3.5E+02 0.0075 28.3 7.3 64 329-395 417-500 (501)
259 PF07745 Glyco_hydro_53: Glyco 21.2 1.7E+02 0.0037 29.2 5.1 77 72-157 33-125 (332)
260 PF03009 GDPD: Glycerophosphor 21.1 1.6E+02 0.0035 26.7 4.8 42 109-163 212-253 (256)
261 PF06574 FAD_syn: FAD syntheta 21.0 2.2E+02 0.0047 25.0 5.3 58 108-165 25-86 (157)
262 COG3867 Arabinogalactan endo-1 20.9 2E+02 0.0043 28.4 5.3 88 72-163 72-179 (403)
263 cd00717 URO-D Uroporphyrinogen 20.7 4.4E+02 0.0095 25.8 8.0 85 73-192 187-277 (335)
264 PF07485 DUF1529: Domain of Un 20.7 67 0.0015 27.2 1.8 52 32-88 30-93 (123)
265 TIGR02495 NrdG2 anaerobic ribo 20.3 2.3E+02 0.005 25.0 5.5 49 103-166 75-124 (191)
266 TIGR01464 hemE uroporphyrinoge 20.3 3.4E+02 0.0073 26.6 7.1 84 73-191 190-279 (338)
267 PF01043 SecA_PP_bind: SecA pr 20.1 2.6E+02 0.0057 23.2 5.3 55 56-112 58-112 (113)
268 cd04734 OYE_like_3_FMN Old yel 20.1 1.8E+02 0.004 28.9 5.2 67 53-125 29-96 (343)
269 PF11790 Glyco_hydro_cc: Glyco 20.1 4.7E+02 0.01 24.4 7.7 80 108-193 92-172 (239)
270 PF00296 Bac_luciferase: Lucif 20.1 1.6E+02 0.0034 28.2 4.6 46 120-165 1-46 (307)
271 cd08571 GDPD_SHV3_plant Glycer 20.0 2.5E+02 0.0054 27.4 6.0 54 109-165 241-297 (302)
272 cd02429 PTH2_like Peptidyl-tRN 20.0 98 0.0021 25.9 2.7 41 108-148 68-110 (116)
No 1
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=1.4e-107 Score=806.64 Aligned_cols=367 Identities=68% Similarity=1.211 Sum_probs=353.8
Q ss_pred ccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcH
Q 039407 29 RRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGI 108 (397)
Q Consensus 29 ~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl 108 (397)
...+++||++++||||||||+.|+|+|||+.|+++|++|++.||+++||+||+|||||+...||++|+|+||++|||+||
T Consensus 20 ~~~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~ 99 (386)
T PLN02808 20 SRNLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGI 99 (386)
T ss_pred hhhcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccH
Confidence 34567899999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRP 188 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~ 188 (397)
|+|+||||++|||||||.++|..+|..++||+++|++.|+++|++|||||||+|+|+.......++|..|++||+++|||
T Consensus 100 ~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 179 (386)
T PLN02808 100 KALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRP 179 (386)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998888999999999999999999999999999877666788999999999999999
Q ss_pred eEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHH
Q 039407 189 IYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 268 (397)
Q Consensus 189 i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~l 268 (397)
|+|++|+||...|..|..+++|+||++.|+.+.|.++.++++.+..++.+++||+|||||||+||+.++|.+|+|+||+|
T Consensus 180 i~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsL 259 (386)
T PLN02808 180 IFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSI 259 (386)
T ss_pred eEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHH
Confidence 99999999988888999899999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCCCCCceEEeeecCCeeEEEEEcCCCCEEEEEEEcCCCceEEEEe
Q 039407 269 WAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAK 348 (397)
Q Consensus 269 wa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~lg~~~~~v~~~~~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~ 348 (397)
|||++|||++|+||++++++.++||+|+||||||||++|.+++++..+++.+||.+++++|+++|+|||+++++++++++
T Consensus 260 Wam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~ 339 (386)
T PLN02808 260 WALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGDLEVWAGPLSKKRVAVVLWNRGSSRATITAR 339 (386)
T ss_pred HHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 349 WEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 349 l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
|++|||.....|+|||||+|+++ +.++++++++|+||+|+||||+|.
T Consensus 340 ~~~lgl~~~~~~~vrDlWs~~~~-g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 340 WSDIGLNSSAVVNARDLWAHSTQ-SSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred HHHhCCCCCCceEEEECCCCCcc-CcccceEEEEECCceEEEEEEeCC
Confidence 99999987667999999999998 788999999999999999999984
No 2
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=3.9e-107 Score=804.97 Aligned_cols=369 Identities=81% Similarity=1.395 Sum_probs=354.5
Q ss_pred ccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcH
Q 039407 29 RRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGI 108 (397)
Q Consensus 29 ~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl 108 (397)
.+.+++||++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||++|+|+||++|||+||
T Consensus 44 ~~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~ 123 (412)
T PLN02692 44 RRNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGI 123 (412)
T ss_pred hhhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcH
Confidence 56777999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRP 188 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~ 188 (397)
|+|+||||++|||||||.++|..+|..++||+++|++.|+++|++|||||||+|+|+.......++|+.|++||+++|||
T Consensus 124 k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 203 (412)
T PLN02692 124 KALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRP 203 (412)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998878999999999999999999999999999876666678999999999999999
Q ss_pred eEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHH
Q 039407 189 IYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 268 (397)
Q Consensus 189 i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~l 268 (397)
|+||+|+||...|+.|..+++|+||++.|+.+.|.++..+++.+..++.+++||+|||||||+||+.++|.+|+|+||+|
T Consensus 204 I~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsL 283 (412)
T PLN02692 204 IFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 283 (412)
T ss_pred eEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHHHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCCCCCceEEeeecCCeeEEEEEcCCCCEEEEEEEcCCCceEEEEe
Q 039407 269 WAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAK 348 (397)
Q Consensus 269 wa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~lg~~~~~v~~~~~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~ 348 (397)
|||++|||++|+||++++++++++|+|+||||||||++|+|++++...++.+||.+++++|+++|+|||+++.+++++++
T Consensus 284 Wai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~ 363 (412)
T PLN02692 284 WAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRMEGDLEIWAGPLSGYRVALLLLNRGPWRNSITAN 363 (412)
T ss_pred HHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeCC
Q 039407 349 WEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPIS 397 (397)
Q Consensus 349 l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~~ 397 (397)
|++|||..+..++|||||+|++++..++++|+++|+||+|+||||+|++
T Consensus 364 ~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl~~~~ 412 (412)
T PLN02692 364 WDDIGIPANSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYILKPIS 412 (412)
T ss_pred HHHhCCCCCCceEEEECCCCCccCccccceEEEEECCceEEEEEEecCC
Confidence 9999998766799999999999832578899999999999999999975
No 3
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=8.7e-107 Score=805.73 Aligned_cols=367 Identities=64% Similarity=1.099 Sum_probs=350.3
Q ss_pred ccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcH
Q 039407 29 RRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGI 108 (397)
Q Consensus 29 ~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl 108 (397)
....++|+++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||.+|+|+||++|||+||
T Consensus 51 ~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~ 130 (427)
T PLN02229 51 GRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGI 130 (427)
T ss_pred hhhhccCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcH
Confidence 45567899999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRP 188 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~ 188 (397)
|+|+||+|++|||||||.++|+.+|.++ ||+++|++.++++|++|||||||+|+|+....+..++|..|++||+++|||
T Consensus 131 k~ladyiH~~GlKfGIy~d~G~~TC~~~-pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 209 (427)
T PLN02229 131 KLLADYVHSKGLKLGIYSDAGVFTCQVR-PGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRS 209 (427)
T ss_pred HHHHHHHHHCCCceEEeccCCCcccCCC-CCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999876 999999999999999999999999999887667788999999999999999
Q ss_pred eEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHH
Q 039407 189 IYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 268 (397)
Q Consensus 189 i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~l 268 (397)
|+|++|+||...|+.|..+++|+||+++|+.+.|+++.++++.+..|+.+++||+|||||||+||+.++|.+|+||||+|
T Consensus 210 I~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsL 289 (427)
T PLN02229 210 IFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSI 289 (427)
T ss_pred cEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHH
Confidence 99999999998888898899999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCCCCCceEEeeecC---CeeEEEEEcCCCCEEEEEEEcCCCceEE
Q 039407 269 WAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEG---DQEVWAAPLSGYRIALLLVNRGPWRYAV 345 (397)
Q Consensus 269 wa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~lg~~~~~v~~~~---~~~vw~~~l~~g~~~va~fN~~~~~~~~ 345 (397)
|||++||||+|+||+++++++++||+|+||||||||++|++++++..++ ..+||.+++++|+++|+|||+++.++++
T Consensus 290 Wai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v 369 (427)
T PLN02229 290 WALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSEPATI 369 (427)
T ss_pred HHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCCCEEE
Confidence 9999999999999999999999999999999999999999999998653 4899999999999999999999999999
Q ss_pred EEeccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 346 TAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 346 ~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
+++|++|||..+..|+|||||+|+++++.++++|+++|+||+|+|||++|+
T Consensus 370 ~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~~~~v~~Hg~~l~rl~~~ 420 (427)
T PLN02229 370 TASWDVIGLESSISVSVRDLWKHKDLSENVVGSFGAQVDAHDCHMYIFTPQ 420 (427)
T ss_pred EEEHHHcCCCCCCceEEEECCCCCccCccccceEEEEECCCeEEEEEEecc
Confidence 999999999876679999999999983357889999999999999999985
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-90 Score=662.97 Aligned_cols=366 Identities=54% Similarity=0.941 Sum_probs=343.9
Q ss_pred cccccCCCCCCCceEEechhhhccCCC----------HHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeee
Q 039407 30 RNLLANGLAETPAMGWNSWNHFWGNIN----------EDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQA 99 (397)
Q Consensus 30 ~~~~~~g~~~~pp~GwnSW~~~~~~i~----------e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~ 99 (397)
+..++||++++|||||+||+.|.|+++ |..+++.||+|++.|+++.||+||+|||||...+||.+|++++
T Consensus 22 ~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva 101 (414)
T KOG2366|consen 22 RMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVA 101 (414)
T ss_pred heeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCcccccc
Confidence 788999999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHH
Q 039407 100 RNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMT 179 (397)
Q Consensus 100 ~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~ 179 (397)
+++|||+|++++++|+|.+|||+|||.+.|..||.++ ||++.|++.++++|++|||||+|+|.|+.......++|..|+
T Consensus 102 ~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~-PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms 180 (414)
T KOG2366|consen 102 DPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGY-PGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMS 180 (414)
T ss_pred ChhhcccchhhhhhchhhcCCceeeeeccCchhhccC-CcccchhhhhhhhhHhhCCcEEeccccccccccccccchhHH
Confidence 9999999999999999999999999999999999655 999999999999999999999999999998888899999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCcccc-------cccccCeEeecCCCCCchHHHHHHHH----hhccchhhcCCCCCCCCC
Q 039407 180 RALMNTGRPIYYSLCEWGDMHPALW-------GDKVGNSWRTTGDIEDTWDSMISRAD----ENEAFAKYARPGGWNDPD 248 (397)
Q Consensus 180 ~al~~~g~~i~~~~c~~g~~~~~~~-------~~~~~~~~Ris~D~~~~w~~~~~~~~----~~~~~~~~~~~~~~nDpD 248 (397)
+||+++||||++++|+||...++.| ..+++|+||+.+|+.+.|.++..++. .+..+..+++||+|||||
T Consensus 181 ~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agPg~WNDpD 260 (414)
T KOG2366|consen 181 RALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGPGGWNDPD 260 (414)
T ss_pred HHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCCCCCCChh
Confidence 9999999999999999998888777 57899999999999999999998887 566788899999999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCCCCCceEEeeecC-CeeEEEEEcC
Q 039407 249 MLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVRWEG-DQEVWAAPLS 327 (397)
Q Consensus 249 ~l~vg~~~lt~~e~rt~~~lwa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~lg~~~~~v~~~~-~~~vw~~~l~ 327 (397)
||++||.++|.+|+++||++||++++||++|.|++.++++.+++|+||++|+|||||+|.|+|.+..++ +.+||.+|++
T Consensus 261 mL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~ievw~~pls 340 (414)
T KOG2366|consen 261 MLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDSIEVWSGPLS 340 (414)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCceEEEeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998544 4999999999
Q ss_pred CCCEEEEEEEcC--CCceEEE-EeccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 328 GYRIALLLVNRG--PWRYAVT-AKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 328 ~g~~~va~fN~~--~~~~~~~-i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
+.++||+++|+. ..+..++ +.|+++|+.....|.++|||+|.......++++++.|+|||++||++.|.
T Consensus 341 ~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~~ 412 (414)
T KOG2366|consen 341 GKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHPS 412 (414)
T ss_pred CceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEec
Confidence 989999999988 4567787 88999999777889999999995222578889999999999999999985
No 5
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=4.2e-82 Score=643.12 Aligned_cols=365 Identities=28% Similarity=0.463 Sum_probs=307.7
Q ss_pred ccccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC-------------CCC
Q 039407 27 PLRRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD-------------RDE 93 (397)
Q Consensus 27 ~~~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~-------------rd~ 93 (397)
...+.+.+++++++||||||||+.|.|+|||+.|+++||. ++.||+++||+||+|||||+... +|+
T Consensus 17 ~~~~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~ 95 (633)
T PLN02899 17 LWIGASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDE 95 (633)
T ss_pred hhccccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCC
Confidence 3456788899999999999999999999999999999995 57899999999999999998642 588
Q ss_pred CCCeeecCCCCCC-----cHHHHHHHHHhCCCeEEEEeeCCccccCC---------------------------------
Q 039407 94 KGNLQARNTTFPS-----GIKALADYVHGKGLKLGIYSSAGYYTCSK--------------------------------- 135 (397)
Q Consensus 94 ~G~~~~~~~~FP~-----Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~--------------------------------- 135 (397)
+|+++||++|||+ |||+|+||||++|||||||+++|+.+|+.
T Consensus 96 ~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~t 175 (633)
T PLN02899 96 WGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERA 175 (633)
T ss_pred CCCCccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccc
Confidence 9999999999998 99999999999999999999999766531
Q ss_pred -------------CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEecCCCCCCcc
Q 039407 136 -------------QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWGDMHPA 202 (397)
Q Consensus 136 -------------~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c~~g~~~~~ 202 (397)
.+||.++|++.++++|++|||||||+|+|+... ...+.|+.|++||+++||||+|++|. |...+.
T Consensus 176 C~w~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~ey~~ms~AL~aTGRPIvySLsp-G~~~~p 253 (633)
T PLN02899 176 CAWMSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEEITYVSEVLKELDRPIVYSLSP-GTSATP 253 (633)
T ss_pred cccCCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHHHHHHHHHHHHhCCCeEEEecC-Ccccch
Confidence 124557888889999999999999999987533 34567999999999999999999996 433333
Q ss_pred ccc---ccccCeEeecCCCCCchHHHHHHHHhhccchhhc-------CCCCCCCCCCcccCC-------------CCCCH
Q 039407 203 LWG---DKVGNSWRTTGDIEDTWDSMISRADENEAFAKYA-------RPGGWNDPDMLEVGN-------------GGMTK 259 (397)
Q Consensus 203 ~~~---~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~~~~-------~~~~~nDpD~l~vg~-------------~~lt~ 259 (397)
.|. .+++|+|||++|+++.|.++..+++.+..|+.+. ++++|||||||+||. .+||.
T Consensus 254 ~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~ 333 (633)
T PLN02899 254 TMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTL 333 (633)
T ss_pred hhhhhhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCH
Confidence 443 4679999999999999999988887655554332 235899999999992 25999
Q ss_pred HHHHHHHHHHHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCCCCCceEEee-------------------------
Q 039407 260 DEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGIQAKKVR------------------------- 314 (397)
Q Consensus 260 ~e~rt~~~lwa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~lg~~~~~v~------------------------- 314 (397)
+|+||||+||||++||||+|.||++|++++++||+|+||||||||+++.+..+..
T Consensus 334 dE~rThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (633)
T PLN02899 334 DEQKTQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQHSTGVGKSDPSV 413 (633)
T ss_pred HHHHHHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEeccccccccccccccccCCCCCcce
Confidence 9999999999999999999999999999999999999999999998742211000
Q ss_pred ---------------------------------------------------------------------ec---------
Q 039407 315 ---------------------------------------------------------------------WE--------- 316 (397)
Q Consensus 315 ---------------------------------------------------------------------~~--------- 316 (397)
.+
T Consensus 414 ~~l~~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 493 (633)
T PLN02899 414 LGLTSCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDAS 493 (633)
T ss_pred EEEEecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccC
Confidence 00
Q ss_pred ------------------------------------------------------CCeeEEEEEcCCCCEEEEEEEcCCCc
Q 039407 317 ------------------------------------------------------GDQEVWAAPLSGYRIALLLVNRGPWR 342 (397)
Q Consensus 317 ------------------------------------------------------~~~~vw~~~l~~g~~~va~fN~~~~~ 342 (397)
+...+|+..-++|.+||+|||.+...
T Consensus 494 ~~~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~ 573 (633)
T PLN02899 494 PKQKRTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEK 573 (633)
T ss_pred CCCCcCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccc
Confidence 00127887778899999999999999
Q ss_pred eEEEEeccccC--CCC-----CCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEe
Q 039407 343 YAVTAKWEDIG--IPP-----NSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKP 395 (397)
Q Consensus 343 ~~~~i~l~~lG--l~~-----~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p 395 (397)
.++++.+++|. |.+ ...++.+|+|+|+++ +.++++++..|+.|||+||.|+.
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~-~~~~~~~~~~v~~hg~~~~~~~c 632 (633)
T PLN02899 574 TKISAKISDLAKALPGSKNLRTSSCTGHEVWSGKDF-GVIKDSISATVEIHGCALFVLHC 632 (633)
T ss_pred eeEEEEhhHhHhhccccccccccccceEEeccCCCc-ccccccEEEEeecCceEEEEEeC
Confidence 99999988883 322 347899999999999 89999999999999999999874
No 6
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=5.2e-79 Score=596.93 Aligned_cols=266 Identities=33% Similarity=0.561 Sum_probs=236.9
Q ss_pred CceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccC----------------CCCCCCCeeecCCCC
Q 039407 41 PAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQ----------------DRDEKGNLQARNTTF 104 (397)
Q Consensus 41 pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~----------------~rd~~G~~~~~~~~F 104 (397)
||||||||+.|.|+|||+.|+++|| |+++||+++||+||+|||||+.. .||.+|+++||++||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rF 79 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRW 79 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccC
Confidence 8999999999999999999999999 78999999999999999999864 268899999999999
Q ss_pred CC-----cHHHHHHHHHhCCCeEEEEeeCCccccC--------CC---------------------------------CC
Q 039407 105 PS-----GIKALADYVHGKGLKLGIYSSAGYYTCS--------KQ---------------------------------MP 138 (397)
Q Consensus 105 P~-----Gl~~l~~~i~~~Glk~Giw~~pg~~~c~--------~~---------------------------------~p 138 (397)
|+ |||+|+||||+||||||||+++|+.+|+ ++ +|
T Consensus 80 Ps~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~ 159 (357)
T PLN03231 80 PSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSE 159 (357)
T ss_pred CCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccch
Confidence 99 9999999999999999999999999886 11 24
Q ss_pred CccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEecCCCCCCcccc---cccccCeEeec
Q 039407 139 GSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWGDMHPALW---GDKVGNSWRTT 215 (397)
Q Consensus 139 g~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c~~g~~~~~~~---~~~~~~~~Ris 215 (397)
|.++|++.++++|++|||||||+|+|+.......++|..|++||+++||||+||+|. |...+..| ..+++|+||++
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~-g~~~~~~~~~~i~~~an~WR~s 238 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSP-GDGATPGLAARVAQLVNMYRVT 238 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecC-CCCCCchhhhhhhhhcCccccc
Confidence 556678999999999999999999997655556789999999999999999999997 33333333 35679999999
Q ss_pred CCCCCchHHHHHHHHhhccch--------hhcCCCCCCCCCCcccC-------------CCCCCHHHHHHHHHHHHHhcC
Q 039407 216 GDIEDTWDSMISRADENEAFA--------KYARPGGWNDPDMLEVG-------------NGGMTKDEYIVHFSIWAISKA 274 (397)
Q Consensus 216 ~D~~~~w~~~~~~~~~~~~~~--------~~~~~~~~nDpD~l~vg-------------~~~lt~~e~rt~~~lwa~~gs 274 (397)
.|+.+.|+++.++++.+..+. .+++||+|||||||+|| +.+||.+|+||||+||||++|
T Consensus 239 ~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~S 318 (357)
T PLN03231 239 GDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKS 318 (357)
T ss_pred CCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999988877554333 35789999999999999 357999999999999999999
Q ss_pred CeeeccCCCCCChhHHhhhcChhhhhhccCCCCC
Q 039407 275 PLLLGCDVRNMTDDTLEIVGNKEVIAVNQDPLGI 308 (397)
Q Consensus 275 pL~is~dl~~l~~~~~~ll~N~~liainqd~lg~ 308 (397)
|||+|.||++|++++++||+|+||||||||++|.
T Consensus 319 PLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 319 PLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred chhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 9999999999999999999999999999999974
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=9.2e-39 Score=319.75 Aligned_cols=308 Identities=23% Similarity=0.331 Sum_probs=189.8
Q ss_pred CCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCC---CCCCeeecCCCCCCcHHHH
Q 039407 35 NGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRD---EKGNLQARNTTFPSGIKAL 111 (397)
Q Consensus 35 ~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd---~~G~~~~~~~~FP~Gl~~l 111 (397)
+...++||||||||+.+++++||+.++++|+.+ +++||++|+||||||....+ ..|+|.+|++|||+||++|
T Consensus 35 ~~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~-----~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l 109 (394)
T PF02065_consen 35 PWRDKPPPVGWNSWEAYYFDITEEKILELADAA-----AELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPL 109 (394)
T ss_dssp TTTTSS--EEEESHHHHTTG--HHHHHHHHHHH-----HHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHH
T ss_pred ccCCCCCceEEEcccccCcCCCHHHHHHHHHHH-----HHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHH
Confidence 334688999999999999999999999999987 77899999999999985322 3599999999999999999
Q ss_pred HHHHHhCCCeEEEEeeCCccc------------c----------C-------CCCCCccchHHHHH-HHHHhcCCcEEEe
Q 039407 112 ADYVHGKGLKLGIYSSAGYYT------------C----------S-------KQMPGSLGYEDQDA-KTFASWGVDYLKY 161 (397)
Q Consensus 112 ~~~i~~~Glk~Giw~~pg~~~------------c----------~-------~~~pg~~~~~~~~~-~~~~~wGvdylK~ 161 (397)
+++||++|||||||++|++.. + . .++|++++|+.+.+ +.+++|||||||+
T Consensus 110 ~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 110 ADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp HHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999997521 0 0 13688999987665 5589999999999
Q ss_pred eCCCCCCC----C---ccchHH----HHHHHHHhcCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHH
Q 039407 162 DNCYNDGS----K---PMDRYP----VMTRALMNTGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRAD 230 (397)
Q Consensus 162 D~~~~~~~----~---~~~~y~----~m~~al~~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~ 230 (397)
||+..... . ...+|. +|.++|++..++++++.|++|+.....-...+.+..-+| |..+.++++..+..
T Consensus 190 D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R~D~g~l~~~~~~w~S-D~tda~~R~~iq~g 268 (394)
T PF02065_consen 190 DFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGGGRFDPGMLYYTPQSWTS-DNTDALERLRIQYG 268 (394)
T ss_dssp E-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTTTSHHHHCCSSEEESB-ST-SHHHHHHHHHH
T ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCccccchheeccccccC-CccchHHHhhhhcc
Confidence 99865211 1 122333 478889999999999999998654322123455444455 66677667665554
Q ss_pred hhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCChhHHhhhcChhhhhhccCC--CCC
Q 039407 231 ENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVRNMTDDTLEIVGNKEVIAVNQDP--LGI 308 (397)
Q Consensus 231 ~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~lwa~~gspL~is~dl~~l~~~~~~ll~N~~liainqd~--lg~ 308 (397)
....+.......+..+.....++ +.++-+.|+++++| |.+.++.|+.+++++.++.++ +.|++-+.. +.+
T Consensus 269 ~s~~~p~~~~~~hv~~~p~~~~~--r~~~l~~r~~~a~~----g~~g~e~dl~~ls~~e~~~~~--~~ia~YK~~r~li~ 340 (394)
T PF02065_consen 269 TSLFYPPEYMGAHVSASPNHQTG--RTTPLEFRAHVAMF----GRLGLELDLTKLSEEELAAVK--EQIAFYKSIRPLIQ 340 (394)
T ss_dssp HCTTSSGGGEEEEEEHSS-TTTH--HHGGHHHHHHHHTC----SEEEEESTGCGS-HHHHHHHH--HHHHHHHHCHHHHH
T ss_pred cccccCHHHhCCeEEeccccccC--Ccccceechhhhhc----CCceeccCcccCCHHHHHHHH--HHHHHHHhHHHHhc
Confidence 43333322111111111111111 23344555554433 688899999999999998875 345443321 122
Q ss_pred ceEEeee----cCCeeEEEEEcCCCCEEEEEEEcCCCc-eEEEEeccccCCCC
Q 039407 309 QAKKVRW----EGDQEVWAAPLSGYRIALLLVNRGPWR-YAVTAKWEDIGIPP 356 (397)
Q Consensus 309 ~~~~v~~----~~~~~vw~~~l~~g~~~va~fN~~~~~-~~~~i~l~~lGl~~ 356 (397)
.++.+.- ..+...|.-...+++.+|+++.....+ ......+.--||++
T Consensus 341 ~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~~~~~~~~~~~~l~l~gLd~ 393 (394)
T PF02065_consen 341 SGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFRLLSSPNPPPPRLRLRGLDP 393 (394)
T ss_dssp HSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEETSS-SSEE-EEEEE-S--T
T ss_pred CCcEEEecCCCccceEEEEEEcCCCCEEEEEEEEcccCCCCCCcceeCCCCCc
Confidence 2332221 123456766677888888777754333 22222333236654
No 8
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.96 E-value=3.8e-28 Score=252.59 Aligned_cols=344 Identities=14% Similarity=0.151 Sum_probs=229.2
Q ss_pred CCCCc-----eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCC----------------CCC
Q 039407 38 AETPA-----MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDE----------------KGN 96 (397)
Q Consensus 38 ~~~pp-----~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~----------------~G~ 96 (397)
.++.| +|||||++|+.++||+.|++.++.|.+.|.+ .++++||||||....+. .-.
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 45678 9999999999999999999999999987776 59999999999854331 112
Q ss_pred eeecCC--------CCCCcHHHHHHHHHh-CCCe-EEEEeeCCc-----c---------ccC-----------CC-----
Q 039407 97 LQARNT--------TFPSGIKALADYVHG-KGLK-LGIYSSAGY-----Y---------TCS-----------KQ----- 136 (397)
Q Consensus 97 ~~~~~~--------~FP~Gl~~l~~~i~~-~Glk-~Giw~~pg~-----~---------~c~-----------~~----- 136 (397)
+..|.+ .||.|||.+++.||+ .|+| +|+|++..- . .+. ..
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a 347 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIV 347 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccCcchh
Confidence 334432 589999999999996 5887 599987521 0 000 00
Q ss_pred ------------CC-CccchHHHHHHHHHhcCCcEEEeeCCCCC-----CC-CccchHHHHHHHHHh----c--CCCeEE
Q 039407 137 ------------MP-GSLGYEDQDAKTFASWGVDYLKYDNCYND-----GS-KPMDRYPVMTRALMN----T--GRPIYY 191 (397)
Q Consensus 137 ------------~p-g~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~-~~~~~y~~m~~al~~----~--g~~i~~ 191 (397)
+| .++.||+...+.+++.|||+||+|....- +. ..++.-+...+||++ . +..++-
T Consensus 348 ~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~ 427 (775)
T PLN02219 348 MDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCIS 427 (775)
T ss_pred hhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 11 24678888899999999999999997531 11 112233334445543 2 344544
Q ss_pred EecCCCCCCcccccccccCeEeecCCCCCchHHH-HHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Q 039407 192 SLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSM-ISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWA 270 (397)
Q Consensus 192 ~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~-~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~lwa 270 (397)
++|+. +...|......+.|+|+|..+.+..- ..++..++..+-+.+...|+|+||++..+ .-.+.|.+..|
T Consensus 428 CMsh~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFqS~H-----p~A~~HAaaRA 499 (775)
T PLN02219 428 CMCHN---TDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLH-----PAAEYHGAARA 499 (775)
T ss_pred ecccC---chhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhceecC-----ccHHHHHHHHh
Confidence 44432 23455567789999999999987542 22333333344445556899999999765 45689999999
Q ss_pred HhcCCeeeccCCCCCChhHHhhhc--ChhhhhhccCCCCCceE-Eeeec----C--CeeEEEEEcCCCCEEEEEEEcCCC
Q 039407 271 ISKAPLLLGCDVRNMTDDTLEIVG--NKEVIAVNQDPLGIQAK-KVRWE----G--DQEVWAAPLSGYRIALLLVNRGPW 341 (397)
Q Consensus 271 ~~gspL~is~dl~~l~~~~~~ll~--N~~liainqd~lg~~~~-~v~~~----~--~~~vw~~~l~~g~~~va~fN~~~~ 341 (397)
++|+|+++||-+.+-+-+.+.-|. +..|++.... |.+-+ .++.+ + -.-||... .++-+|++||-+..
T Consensus 500 iSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDclF~Dp~~dg~slLKIwn~n--~~~gviG~FNcqGa 575 (775)
T PLN02219 500 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP--GRPTRDCLFADPARDGTSLLKIWNVN--KCTGVVGVFNCQGA 575 (775)
T ss_pred hcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC--CCcchhhhccccCCCCceEEEEEEcc--cccceEEEEeccCC
Confidence 999999999999888777666443 3344443321 33322 11111 1 15788853 44559999996543
Q ss_pred c-----------------eEEEEecccc-CC------CCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 342 R-----------------YAVTAKWEDI-GI------PPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 342 ~-----------------~~~~i~l~~l-Gl------~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
. .+-.++.+++ |+ .-++.+.|+-.=+++-..-.....++++|+|-+..||.+.|+
T Consensus 576 gW~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w~~~~~vy~~~sg~l~~l~~~~~~~vtL~~~~~Ei~tv~Pv 654 (775)
T PLN02219 576 GWCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDWSGDSVVYAYKSGEVVRLPKGASIPVTLKVLEYELFHFCPL 654 (775)
T ss_pred CCCchhhccccccCCCcceEEEEcchhccchhhccccCcCCCEEEEEeccCeEEEcCCCCceEEEecCCcEEEEEEeeE
Confidence 2 3445677776 44 224556677666666431123446889999999999999986
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.96 E-value=3.2e-27 Score=246.23 Aligned_cols=342 Identities=14% Similarity=0.171 Sum_probs=224.7
Q ss_pred CCCc-----eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCC----------------Ce
Q 039407 39 ETPA-----MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKG----------------NL 97 (397)
Q Consensus 39 ~~pp-----~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G----------------~~ 97 (397)
++.| +|||||++||.++||+.|++.++.|.+.|.+ .++++||||||....|..+ ++
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f 272 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHI 272 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhccc
Confidence 4678 9999999999999999999999999887776 5999999999985333222 23
Q ss_pred eecCCCCC-------------CcHHHHHHHHHh-CCCe-EEEEeeCC---------cc------ccC---CC--------
Q 039407 98 QARNTTFP-------------SGIKALADYVHG-KGLK-LGIYSSAG---------YY------TCS---KQ-------- 136 (397)
Q Consensus 98 ~~~~~~FP-------------~Gl~~l~~~i~~-~Glk-~Giw~~pg---------~~------~c~---~~-------- 136 (397)
..|. ||| .|||.+++.||+ .|+| +|+|++.. .. +-. ..
T Consensus 273 ~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~ 351 (758)
T PLN02355 273 KENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNE 351 (758)
T ss_pred cccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccC
Confidence 3453 777 499999999997 5887 59998641 10 000 00
Q ss_pred ----------------CCC-ccchHHHHHHHHHhcCCcEEEeeCCCCC-----CC-CccchHHHHHHHHHh----c--CC
Q 039407 137 ----------------MPG-SLGYEDQDAKTFASWGVDYLKYDNCYND-----GS-KPMDRYPVMTRALMN----T--GR 187 (397)
Q Consensus 137 ----------------~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~-~~~~~y~~m~~al~~----~--g~ 187 (397)
+|+ +..||+...+.+++.|||+||+|....- +. ..++.-+...+||++ . +.
T Consensus 352 ~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~n 431 (758)
T PLN02355 352 PCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPDN 431 (758)
T ss_pred cchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 121 3577888889999999999999997541 11 122223334445543 2 44
Q ss_pred CeEEEecCCCCCCcccccccccCeEeecCCCCCchHHH-HHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHH
Q 039407 188 PIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSM-ISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHF 266 (397)
Q Consensus 188 ~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~-~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~ 266 (397)
.++-++|+. +...|......+.|+|+|..+.+... .-++..++..+-+.+...|+|+||++..+ .-.+.|.
T Consensus 432 gvI~CMs~~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~h-----p~A~~HA 503 (758)
T PLN02355 432 GIISCMSHN---TDGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLH-----PMAEYHA 503 (758)
T ss_pred ceEEecccC---chhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCcccceecC-----ccHHHHH
Confidence 554444432 23455567789999999999987643 22333344444455667899999999755 4578999
Q ss_pred HHHHHhcCCeeeccCCCCCChhHHhhhc--ChhhhhhccCCCCCceE-Eeeec----CC--eeEEEEEcCCCCEEEEEEE
Q 039407 267 SIWAISKAPLLLGCDVRNMTDDTLEIVG--NKEVIAVNQDPLGIQAK-KVRWE----GD--QEVWAAPLSGYRIALLLVN 337 (397)
Q Consensus 267 ~lwa~~gspL~is~dl~~l~~~~~~ll~--N~~liainqd~lg~~~~-~v~~~----~~--~~vw~~~l~~g~~~va~fN 337 (397)
+..|++|+|+++||-+.+-+-+.+.-|. +..|++.... |.+-| .++.+ +. .-||. +..++-+|++||
T Consensus 504 aaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~p--g~PtrDclF~Dp~~dg~slLKIwn--~nk~sGviG~FN 579 (758)
T PLN02355 504 AARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP--GRPTRDCLFSDPARDGKSLLKIWN--LNEFTGVIGVFN 579 (758)
T ss_pred HHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccC--CCcchhhhccccccCCceEEEEEE--cCCcccEEEEEe
Confidence 9999999999999999888777666443 3344443322 33321 11111 11 45776 445566999999
Q ss_pred cCCCc---------------eE--EEEeccccCC-------CCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEE
Q 039407 338 RGPWR---------------YA--VTAKWEDIGI-------PPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYIL 393 (397)
Q Consensus 338 ~~~~~---------------~~--~~i~l~~lGl-------~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l 393 (397)
-+... .+ -.+.++++.+ ..++.+.|+..=+++-+....+..++++|++-+..||.+
T Consensus 580 cqGagw~~~~~~~~~~~~~~~~l~~~v~~~Dv~~~~~~a~~~w~~~~~vy~~~sg~l~~~~~~~~~~vtL~~~~~eiftv 659 (758)
T PLN02355 580 CQGAGWCRVGKKNLIHDEQPGTITGVIRAKDVDYLPKVADDEWTGDSIVYSHLGGEVVYLPKDASLPVTLKSREYEVFTV 659 (758)
T ss_pred ccCCcccchhccccccCCCCceeEEEEccccccchhhccccCCCCCeEEEEecCceEEecCCCCceEEEecCCceEEEEE
Confidence 54322 12 3456666521 123445666655555321112557889999999999999
Q ss_pred EeC
Q 039407 394 KPI 396 (397)
Q Consensus 394 ~p~ 396 (397)
.|+
T Consensus 660 ~Pi 662 (758)
T PLN02355 660 VPV 662 (758)
T ss_pred eeE
Confidence 986
No 10
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.95 E-value=6.4e-26 Score=235.84 Aligned_cols=338 Identities=17% Similarity=0.191 Sum_probs=214.9
Q ss_pred eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCC------------CC---eeecCCCCCC-
Q 039407 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK------------GN---LQARNTTFPS- 106 (397)
Q Consensus 43 ~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~------------G~---~~~~~~~FP~- 106 (397)
+|||||++||.++||+.|++.++.|.+.|.+ .++++||||||....|.. -+ +..| .|||+
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~ 279 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKK 279 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccCccc-cccccc
Confidence 8999999999999999999999999887776 599999999998643321 12 3344 68874
Q ss_pred -----cHHHHHHHHH-hCCCe-EEEEeeCC---------c---c--c-----cC------CC-----------------C
Q 039407 107 -----GIKALADYVH-GKGLK-LGIYSSAG---------Y---Y--T-----CS------KQ-----------------M 137 (397)
Q Consensus 107 -----Gl~~l~~~i~-~~Glk-~Giw~~pg---------~---~--~-----c~------~~-----------------~ 137 (397)
|||.+++.|| +.|+| +|+|++.. . . . +. .+ +
T Consensus 280 ~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~ 359 (750)
T PLN02684 280 DDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVN 359 (750)
T ss_pred cCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccC
Confidence 9999999998 45887 59998641 1 0 0 00 00 1
Q ss_pred CC-ccchHHHHHHHHHhcCCcEEEeeCCCCC-----CC-CccchHHHHHHHHHhc------CCCeEEEecCCCCCCcccc
Q 039407 138 PG-SLGYEDQDAKTFASWGVDYLKYDNCYND-----GS-KPMDRYPVMTRALMNT------GRPIYYSLCEWGDMHPALW 204 (397)
Q Consensus 138 pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~-~~~~~y~~m~~al~~~------g~~i~~~~c~~g~~~~~~~ 204 (397)
|+ +..||+...+.+++.|||+||+|....- +. ..++.-++..+||+++ +..++-++|+. +...|
T Consensus 360 P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~---~d~i~ 436 (750)
T PLN02684 360 PKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHN---TDALY 436 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccC---chhhh
Confidence 21 4678888899999999999999997531 11 1122223334455432 23344433332 23456
Q ss_pred cccccCeEeecCCCCCchHHH-HHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHhcCCeeeccCCC
Q 039407 205 GDKVGNSWRTTGDIEDTWDSM-ISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKAPLLLGCDVR 283 (397)
Q Consensus 205 ~~~~~~~~Ris~D~~~~w~~~-~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~lwa~~gspL~is~dl~ 283 (397)
..+...+.|+|+|..+.+..- ..++..++..+-+.+...|+|+||++..+ .-.+.|.+..|++|+|+++||.+.
T Consensus 437 ~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS~h-----p~A~~HAaaRAisGGPIYvSD~PG 511 (750)
T PLN02684 437 CSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHSLH-----PAAEYHASARAISGGPLYVSDAPG 511 (750)
T ss_pred cccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCcccceecC-----ccHHHHHHHHhhcCCceEEecCCC
Confidence 667889999999999977542 23333344444455556899999998765 356899999999999999999998
Q ss_pred CCChhHHhhhc--ChhhhhhccCCCCCceE-EeeecC------CeeEEEEEcCCCCEEEEEEEcCCCceEEE--------
Q 039407 284 NMTDDTLEIVG--NKEVIAVNQDPLGIQAK-KVRWEG------DQEVWAAPLSGYRIALLLVNRGPWRYAVT-------- 346 (397)
Q Consensus 284 ~l~~~~~~ll~--N~~liainqd~lg~~~~-~v~~~~------~~~vw~~~l~~g~~~va~fN~~~~~~~~~-------- 346 (397)
+-+-+.+.-|. +..|++.... |.+-| .++.++ -.-||... .++-+|++||-+.......
T Consensus 512 ~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDcLF~DP~~dg~slLKIwn~n--~~tGViG~FNcqGagw~~~~~~~~~~~ 587 (750)
T PLN02684 512 KHNFELLKKLVLPDGSILRARLP--GRPTRDCLFSDPARDGVSLLKIWNMN--KYTGVLGVYNCQGAAWSSTERKNIFHQ 587 (750)
T ss_pred CccHHHHHhhhCCCCcccccccC--CccchhhhccCcccCCccEEEEEEec--CCCceEEEEeccCCccCccccccccCC
Confidence 87777666443 3344443322 33321 112221 15688765 4445899999754322111
Q ss_pred ---------EeccccC-C-------CCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 347 ---------AKWEDIG-I-------PPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 347 ---------i~l~~lG-l-------~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
+.-+++. + ..++.+.|+-.-+++-..-.....++++|+|-+..||.+.|+
T Consensus 588 ~~~~~~s~~v~~~Dv~~~~~~a~~~~w~~~~~vy~h~s~~l~~l~~~~~~~vtL~~~~~Ei~t~~Pv 654 (750)
T PLN02684 588 TKTDSLTGSIRGRDVHLIAEAATDPNWNGDCAVYCHSRGELITMPYNASLPVSLKVLEHEIFTVTPI 654 (750)
T ss_pred CCCccceeeecccccchhhhhccCCCCCCCEEEEEecCCeEEecCCCCceEEEecCCcEEEEEEeeE
Confidence 1111110 0 011223333333333210112345789999999999999986
No 11
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.95 E-value=1.9e-25 Score=232.56 Aligned_cols=339 Identities=16% Similarity=0.143 Sum_probs=216.6
Q ss_pred eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCC-------------C--------Ceeec-
Q 039407 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK-------------G--------NLQAR- 100 (397)
Q Consensus 43 ~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~-------------G--------~~~~~- 100 (397)
+|||||++||.++|++.|++-++.|.+.|.+. .+++||||||.-..+.. | ++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 89999999999999999999999999888874 89999999997422210 1 12334
Q ss_pred --------CCCCCCcHHHHHHHHHhC--CCe-EEEEeeCC-----cc----c--------cC------C-----------
Q 039407 101 --------NTTFPSGIKALADYVHGK--GLK-LGIYSSAG-----YY----T--------CS------K----------- 135 (397)
Q Consensus 101 --------~~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg-----~~----~--------c~------~----------- 135 (397)
+..||.|||.+++.||++ |+| +++|++.. +. . +. .
T Consensus 292 KF~~~~~~~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~ 371 (777)
T PLN02711 292 KFRDYVSPKSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIV 371 (777)
T ss_pred cccccccccCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccc
Confidence 345677999999999995 687 69998641 10 0 00 0
Q ss_pred ------CCC-CccchHHHHHHHHHhcCCcEEEeeCCCC----C-CC-CccchHHHHHHHHH----h--cCCCeEEEecCC
Q 039407 136 ------QMP-GSLGYEDQDAKTFASWGVDYLKYDNCYN----D-GS-KPMDRYPVMTRALM----N--TGRPIYYSLCEW 196 (397)
Q Consensus 136 ------~~p-g~~~~~~~~~~~~~~wGvdylK~D~~~~----~-~~-~~~~~y~~m~~al~----~--~g~~i~~~~c~~ 196 (397)
-+| .++.||+.....+++.|||+||+|.... . .. ..++.-++..+||+ + .+..++-++|+.
T Consensus 372 ~~g~glv~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I~CMs~~ 451 (777)
T PLN02711 372 NNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEHC 451 (777)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccC
Confidence 012 1467888889999999999999998654 1 11 11223333444544 3 234454444332
Q ss_pred CCCCcccc-cccccCeEeecCCCCCchHHH---------HHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHH
Q 039407 197 GDMHPALW-GDKVGNSWRTTGDIEDTWDSM---------ISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHF 266 (397)
Q Consensus 197 g~~~~~~~-~~~~~~~~Ris~D~~~~w~~~---------~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~ 266 (397)
. ...+ ..+...+.|+|+|..+.-..- ..++..++..+-+.+...|+|+||++.-+ .-.+.|.
T Consensus 452 ~---d~~~~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyNSLllg~~v~PDWDMF~S~H-----p~A~~HA 523 (777)
T PLN02711 452 N---DFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTH-----PCAEFHA 523 (777)
T ss_pred c---hhhhccCcccceeeecccccCCCCccccccccccccceeeeehhhhhhhcccccCCchhhhccC-----chHHHHH
Confidence 1 1111 234567899999998643210 01233334444455666889999999765 4778999
Q ss_pred HHHHHhcCCeeeccCCCCCChhHHhhhc--ChhhhhhccCCCCCceEE-eee----cCC--eeEEEEEcCCCCEEEEEEE
Q 039407 267 SIWAISKAPLLLGCDVRNMTDDTLEIVG--NKEVIAVNQDPLGIQAKK-VRW----EGD--QEVWAAPLSGYRIALLLVN 337 (397)
Q Consensus 267 ~lwa~~gspL~is~dl~~l~~~~~~ll~--N~~liainqd~lg~~~~~-v~~----~~~--~~vw~~~l~~g~~~va~fN 337 (397)
+..|++|+|+++||-+.+-+-+.+.-|. +..|++.... |.+.|- ++. ++. .-||...- ++-++++||
T Consensus 524 aaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~p--g~PtrDcLF~DP~~dg~slLKIwn~nk--~tGviG~FN 599 (777)
T PLN02711 524 ASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYY--ALPTRDCLFEDPLHDGKTMLKIWNLNK--FTGVIGAFN 599 (777)
T ss_pred HHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCC--CCccchhhccccccCCceEEEEEeecC--CcceEEEEE
Confidence 9999999999999999887766665433 3344544322 333221 111 111 56777653 334899999
Q ss_pred cCCCc-----------------eEEEEeccccCCCC---------CCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEE
Q 039407 338 RGPWR-----------------YAVTAKWEDIGIPP---------NSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMY 391 (397)
Q Consensus 338 ~~~~~-----------------~~~~i~l~~lGl~~---------~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll 391 (397)
-+... .+-.|+.+++.... ...|.|+..=+++-........++++|.+-+..||
T Consensus 600 cqgagW~~~~~~~~~~~~~~~~vt~~v~~~Dv~w~~~~~~~~~~~~~~y~vy~~~s~~l~~l~~~~~l~vtL~~~~~Eif 679 (777)
T PLN02711 600 CQGGGWCRETRRNKCASQFSHTVTAKASPKDIEWNSGKSPISIEGVQVFAVYLFQSKKLVLSKPSENLEISLEPFNFELI 679 (777)
T ss_pred ecCCcccchhhhcccccCCCCceEEEEchHHhcccCCCCCcCccCceeEEEEEecCCeEEECCCCCceEEEecCcceEEE
Confidence 64222 34456777763321 22355665556653211235578999999999999
Q ss_pred EEEeC
Q 039407 392 ILKPI 396 (397)
Q Consensus 392 ~l~p~ 396 (397)
.+.|+
T Consensus 680 tv~Pv 684 (777)
T PLN02711 680 TVSPV 684 (777)
T ss_pred EEeee
Confidence 99986
No 12
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.94 E-value=6.1e-25 Score=230.58 Aligned_cols=339 Identities=19% Similarity=0.245 Sum_probs=218.8
Q ss_pred eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCC------------C-----Ce--------
Q 039407 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK------------G-----NL-------- 97 (397)
Q Consensus 43 ~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~------------G-----~~-------- 97 (397)
+|||||++|+.++|++.|++-++.|.+.|++ ..+++||||||...++.. | +|
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 8999999999999999999999999888876 489999999997543322 1 11
Q ss_pred -ee-----cCCCCCCcHHHHHHHHHhC--CCe-EEEEeeCC-----ccc------------cC------CC---------
Q 039407 98 -QA-----RNTTFPSGIKALADYVHGK--GLK-LGIYSSAG-----YYT------------CS------KQ--------- 136 (397)
Q Consensus 98 -~~-----~~~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg-----~~~------------c~------~~--------- 136 (397)
+. .++.||.||+.++++||++ |+| +|+|++.. +.. +. ..
T Consensus 274 F~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~ 353 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSI 353 (747)
T ss_pred hhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCcccccccc
Confidence 11 1246999999999999998 887 69998641 100 00 00
Q ss_pred --------CC-CccchHHHHHHHHHhcCCcEEEeeCCCCC-----CC-CccchHHHHHHHHH----hc--CCCeEEEecC
Q 039407 137 --------MP-GSLGYEDQDAKTFASWGVDYLKYDNCYND-----GS-KPMDRYPVMTRALM----NT--GRPIYYSLCE 195 (397)
Q Consensus 137 --------~p-g~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~-~~~~~y~~m~~al~----~~--g~~i~~~~c~ 195 (397)
.| .++.||+...+.+++.|||+||+|....- +. ...+.-+...+||+ +. +..++-++|+
T Consensus 354 ~~~g~glv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CMsh 433 (747)
T PF05691_consen 354 VKGGLGLVDPEDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCMSH 433 (747)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Confidence 12 14578888899999999999999997541 11 11222223344443 32 3455554444
Q ss_pred CCCCCccccc-ccccCeEeecCCCCCchHHH---------HHHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHH
Q 039407 196 WGDMHPALWG-DKVGNSWRTTGDIEDTWDSM---------ISRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVH 265 (397)
Q Consensus 196 ~g~~~~~~~~-~~~~~~~Ris~D~~~~w~~~---------~~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~ 265 (397)
.+ ...|. .......|+|+|..+.+..- ..++.+++..+-+.+...|+|+||++.-+ ...+.|
T Consensus 434 ~~---~~l~~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~~g~~~~PDwDMF~S~h-----~~A~~H 505 (747)
T PF05691_consen 434 NP---DNLYHSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLLLGQFVWPDWDMFQSSH-----PAAEFH 505 (747)
T ss_pred Cc---cchhcccccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHhhcCCCcccccccC-----ccHHHH
Confidence 32 23444 45678899999999865421 22233343333444556889999999755 467899
Q ss_pred HHHHHHhcCCeeeccCCCCCChhHHhhh--cChhhhhhccCCCCCceE-Eeeec----C--CeeEEEEEcCCCCEEEEEE
Q 039407 266 FSIWAISKAPLLLGCDVRNMTDDTLEIV--GNKEVIAVNQDPLGIQAK-KVRWE----G--DQEVWAAPLSGYRIALLLV 336 (397)
Q Consensus 266 ~~lwa~~gspL~is~dl~~l~~~~~~ll--~N~~liainqd~lg~~~~-~v~~~----~--~~~vw~~~l~~g~~~va~f 336 (397)
.++.|++|+|++|||.+.+-+-+.++-| .+..|++.... |.+-+ -+..+ + -.-||...-.. -+|++|
T Consensus 506 AaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~p--g~Pt~d~Lf~dp~~d~~~lLKi~n~n~~~--gvig~F 581 (747)
T PF05691_consen 506 AAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHP--GRPTRDCLFEDPLRDGKSLLKIWNLNKFT--GVIGVF 581 (747)
T ss_pred HHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccC--CCCChhhhcccCCCCCceeEEEEecCCcc--ceEEEE
Confidence 9999999999999999988877666533 34455554433 32222 11111 1 15678764333 489999
Q ss_pred EcCCC---------------ceEEE--EeccccC-C---C-----CCCeeEEEEcCCCcccceee-eeeEEEEEcCCcEE
Q 039407 337 NRGPW---------------RYAVT--AKWEDIG-I---P-----PNSVVEARDLWEHKTLTKQF-VGNLSAMVGSHACK 389 (397)
Q Consensus 337 N~~~~---------------~~~~~--i~l~~lG-l---~-----~~~~~~v~DlWsg~~~~g~~-~g~~~~~L~ph~~~ 389 (397)
|-... +.+++ +.-+++- + . ..+.+.|+..=+++-..-.. ..++.++|+|-...
T Consensus 582 N~qgagw~~~~~~~~~~~~~~~~~t~~v~~~Dv~~~~~~~~~~~~~~~~~avY~~~~~~l~~l~~k~~~~~vtL~~~~~E 661 (747)
T PF05691_consen 582 NCQGAGWCREERKNKSHDECPGTLTGSVRPSDVEWISEVAGADDGWNGDFAVYSHRSGELVLLPPKSESLPVTLKPLEFE 661 (747)
T ss_pred ecCCCcccchhhhccccCCCCcceEeeccccccceeccccccCcCCCccEEEEEcCCCeEEEecCCCCCceEEEcCcceE
Confidence 96421 22232 3333331 1 1 13457777766666321121 34789999999999
Q ss_pred EEEEEeC
Q 039407 390 MYILKPI 396 (397)
Q Consensus 390 ll~l~p~ 396 (397)
||.++|+
T Consensus 662 l~tv~Pv 668 (747)
T PF05691_consen 662 LFTVSPV 668 (747)
T ss_pred EEEEeeE
Confidence 9999986
No 13
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=228.47 Aligned_cols=177 Identities=19% Similarity=0.278 Sum_probs=135.5
Q ss_pred cccccccccccccccccc-----CCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCC
Q 039407 17 ADDKLNHNNQPLRRNLLA-----NGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDR 91 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~-----~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~r 91 (397)
.|.-+|++-|.+.-.... +-+.+..|+|||||++||.++|++.++++++.+ |+.|++.|+|||||+....
T Consensus 263 edqgl~~lsq~y~~~v~~~i~~~~~~~kprPi~~nsWea~Yfd~t~e~ile~vk~a-----kk~gvE~FvlDDGwfg~rn 337 (687)
T COG3345 263 EDQGLNGLSQKYAELVRMEIVPRPRVKKPRPIGWNSWEAYYFDFTEEEILENVKEA-----KKFGVELFVLDDGWFGGRN 337 (687)
T ss_pred cCCCcchHHHHHHHHHHhhcCcccccCCCCcceeeceeeeeecCCHHHHHHHHHHH-----hhcCeEEEEEccccccccC
Confidence 345567777766544333 334467799999999999999999999999976 7788999999999997533
Q ss_pred C---CCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC---------------C------------------
Q 039407 92 D---EKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS---------------K------------------ 135 (397)
Q Consensus 92 d---~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~---------------~------------------ 135 (397)
| .-|+|..|.+|||+|+.+|++.|++.|++||||++|++.... +
T Consensus 338 dd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~ 417 (687)
T COG3345 338 DDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPI 417 (687)
T ss_pred cchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccchHHHhhCCCeEEecCCccccccccchhhhccChH
Confidence 3 259999999999999999999999999999999999863111 0
Q ss_pred -----CCCCccchHHHHHHHHH-hcCCcEEEeeCCCCCCCCccchHHH--HHHHHHhcCCCeEEEecCCCCC
Q 039407 136 -----QMPGSLGYEDQDAKTFA-SWGVDYLKYDNCYNDGSKPMDRYPV--MTRALMNTGRPIYYSLCEWGDM 199 (397)
Q Consensus 136 -----~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~~~~~~y~~--m~~al~~~g~~i~~~~c~~g~~ 199 (397)
.++-++-+...++++++ +||..++|+|+.+++...++. |.- +.+-|..-...+.|+-|..|..
T Consensus 418 vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqr-y~ly~l~~~l~~k~~~i~FeScasGg~ 488 (687)
T COG3345 418 VVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQR-YQLYRLFDQLNLKFPHILFESCASGGE 488 (687)
T ss_pred HHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchH-HHHHHHHHHhhhcCCCchhhhhccccc
Confidence 12334555567788888 999999999999987665433 332 3334455567888998988764
No 14
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.87 E-value=1.6e-20 Score=195.66 Aligned_cols=339 Identities=15% Similarity=0.133 Sum_probs=210.0
Q ss_pred eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCC---------------------------
Q 039407 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKG--------------------------- 95 (397)
Q Consensus 43 ~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G--------------------------- 95 (397)
+|||||.+||.+++++.|.+-.+.|++-|..+ ++++||||||.-..|..+
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~pp---rfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVPP---RFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCCc---cEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 89999999999999999999999998877776 899999999965432100
Q ss_pred -------C-eeecC------------------------------------------------------------------
Q 039407 96 -------N-LQARN------------------------------------------------------------------ 101 (397)
Q Consensus 96 -------~-~~~~~------------------------------------------------------------------ 101 (397)
. ..+++
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 0 00111
Q ss_pred -----CCCCCcHHHHHHHHHhC--CCe-EEEEeeCCcc-----c-----------cC------CC---------------
Q 039407 102 -----TTFPSGIKALADYVHGK--GLK-LGIYSSAGYY-----T-----------CS------KQ--------------- 136 (397)
Q Consensus 102 -----~~FP~Gl~~l~~~i~~~--Glk-~Giw~~pg~~-----~-----------c~------~~--------------- 136 (397)
+.=|.|||.+++.||++ |+| +++|++..-. . +. .+
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~g 460 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIG 460 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCcee
Confidence 12235999999999986 465 6889865210 0 00 00
Q ss_pred --CCC-ccchHHHHHHHHHhcCCcEEEeeCCCCC-----CC-Cccc----hHHHHHHHHHhcC--CCeEEEecCCCCCCc
Q 039407 137 --MPG-SLGYEDQDAKTFASWGVDYLKYDNCYND-----GS-KPMD----RYPVMTRALMNTG--RPIYYSLCEWGDMHP 201 (397)
Q Consensus 137 --~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~-~~~~----~y~~m~~al~~~g--~~i~~~~c~~g~~~~ 201 (397)
+|. +..||+.....+++.|||+||+|....- +. ..++ .|..+...+.+.. +.++-++|+.+ .
T Consensus 461 lv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~---~ 537 (865)
T PLN02982 461 LVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN---D 537 (865)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc---h
Confidence 121 4678888899999999999999987531 11 1122 2233444444433 34444433321 1
Q ss_pred ccc-cccccCeEeecCCCCCc------hHHHH---HHHHhhccchhhcCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHH
Q 039407 202 ALW-GDKVGNSWRTTGDIEDT------WDSMI---SRADENEAFAKYARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAI 271 (397)
Q Consensus 202 ~~~-~~~~~~~~Ris~D~~~~------w~~~~---~~~~~~~~~~~~~~~~~~nDpD~l~vg~~~lt~~e~rt~~~lwa~ 271 (397)
..| ..+..-+.|+|+|..+. |+... .++.+++..+-+.+...|+|+||++..+ .-.+.|.+..||
T Consensus 538 ~~~~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H-----~~A~fHAaaRAI 612 (865)
T PLN02982 538 FFFLGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSDH-----LCAEFHAGSRAI 612 (865)
T ss_pred hhhccCCcceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhccccC-----chHHHHHHHHhh
Confidence 122 23556788999998874 32211 1233333334455666899999999755 577899999999
Q ss_pred hcCCeeeccCCCCCChhHHhhhc--ChhhhhhccCCCCCceEE-eeec----C--CeeEEEEEcCCCCEEEEEEEcCC--
Q 039407 272 SKAPLLLGCDVRNMTDDTLEIVG--NKEVIAVNQDPLGIQAKK-VRWE----G--DQEVWAAPLSGYRIALLLVNRGP-- 340 (397)
Q Consensus 272 ~gspL~is~dl~~l~~~~~~ll~--N~~liainqd~lg~~~~~-v~~~----~--~~~vw~~~l~~g~~~va~fN~~~-- 340 (397)
+|+|+++||-+.+-+-+.+.-|. ...|++.... |.+-|- ++.+ + -.-+|...--.| +|++||-..
T Consensus 613 sGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~p--g~PTrDcLF~DPl~DGks~LKIWN~Nk~~G--ViG~FNCQGag 688 (865)
T PLN02982 613 CGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHY--ALPTRDCLFKNPLFDKKTILKIWNFNKFGG--VIGAFNCQGAG 688 (865)
T ss_pred cCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCC--CCCCcchhccCcccCCceEEEEEeccCcCc--eEEEEEeccCC
Confidence 99999999999887776665443 2234433322 222220 1111 1 146777543344 788898321
Q ss_pred -------------CceE--EEEeccccCCC---------CCCeeEEEEcCCCcccceee-eeeEEEEEcCCcEEEEEEEe
Q 039407 341 -------------WRYA--VTAKWEDIGIP---------PNSVVEARDLWEHKTLTKQF-VGNLSAMVGSHACKMYILKP 395 (397)
Q Consensus 341 -------------~~~~--~~i~l~~lGl~---------~~~~~~v~DlWsg~~~~g~~-~g~~~~~L~ph~~~ll~l~p 395 (397)
.+.+ -++..+++... ....+.|+..-+++-+.-.. ...+.++|.+-...||.+.|
T Consensus 689 W~~~~~~~~~~~~~~~~vtg~v~~~Dve~~~~~~~a~~~~~~~~~vY~~~~~el~~~~~~~~~~~vtL~~~e~elftv~P 768 (865)
T PLN02982 689 WDPKEHRIKGYSECYKPVSGSVHVSDIEWDQKPEASQMGEAEEYAVYLNQAEELLLMTPKSEAIQITLQPSSFELFSFVP 768 (865)
T ss_pred CCchhccccccCCCCcceEEEEcHHHcccccccccccCCCcccEEEEEecCceEEEecCCCCcceEEeccceeEEEEEee
Confidence 1233 34555555322 23446677755555321012 24689999999999999998
Q ss_pred C
Q 039407 396 I 396 (397)
Q Consensus 396 ~ 396 (397)
+
T Consensus 769 I 769 (865)
T PLN02982 769 V 769 (865)
T ss_pred e
Confidence 6
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.76 E-value=4.7e-17 Score=159.11 Aligned_cols=173 Identities=18% Similarity=0.350 Sum_probs=128.7
Q ss_pred CCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC
Q 039407 39 ETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGK 118 (397)
Q Consensus 39 ~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~ 118 (397)
-++|+ ||||+.+++.+||++|++.++.+++.++ .++.|+||++|+.. .|+|+.|++|||+ ++.++++||++
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~~----~g~f~~d~~~FPd-p~~mi~~l~~~ 82 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDNGF---PNGQIEIDDNWETC----YGDFDFDPTKFPD-PKGMIDQLHDL 82 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHcCC---CCCeEEeCCCcccc----CCccccChhhCCC-HHHHHHHHHHC
Confidence 46676 9999999999999999999999988766 47999999999863 6889999999998 99999999999
Q ss_pred CCeEEEEeeCCccc------------------cC-----------------CCCCCccchHHHHHHHHH-hcCCcEEEee
Q 039407 119 GLKLGIYSSAGYYT------------------CS-----------------KQMPGSLGYEDQDAKTFA-SWGVDYLKYD 162 (397)
Q Consensus 119 Glk~Giw~~pg~~~------------------c~-----------------~~~pg~~~~~~~~~~~~~-~wGvdylK~D 162 (397)
|+|+++|+.|.+.. ++ -++|.+++++...++.+. ++|||++|+|
T Consensus 83 G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 83 GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 99999999996421 00 146788889988887765 9999999999
Q ss_pred CCCCCCC----------CccchHHH-HHHHHHhcCCCeEEEecCCCCCCcccccccc-cCeEeecCCCCCchHHH---HH
Q 039407 163 NCYNDGS----------KPMDRYPV-MTRALMNTGRPIYYSLCEWGDMHPALWGDKV-GNSWRTTGDIEDTWDSM---IS 227 (397)
Q Consensus 163 ~~~~~~~----------~~~~~y~~-m~~al~~~g~~i~~~~c~~g~~~~~~~~~~~-~~~~Ris~D~~~~w~~~---~~ 227 (397)
++..... .....|.. +.++..+.+ +++++-+.+.. .++ +-.| ++|....|+.. ..
T Consensus 163 ~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg~~g-------~~~~~~~w--~GD~~s~W~~~~gl~~ 232 (303)
T cd06592 163 AGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAGWRS-------QGLPLFVR--MMDKDSSWGGDNGLKS 232 (303)
T ss_pred CCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEeeeec-------CCCCeeEE--cCCCCCCCCCCcCHHH
Confidence 9875211 01123332 444444444 67776544331 133 3444 78999999876 54
Q ss_pred HHH
Q 039407 228 RAD 230 (397)
Q Consensus 228 ~~~ 230 (397)
++.
T Consensus 233 ~i~ 235 (303)
T cd06592 233 LIP 235 (303)
T ss_pred HHH
Confidence 443
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.54 E-value=3e-13 Score=132.61 Aligned_cols=165 Identities=19% Similarity=0.298 Sum_probs=121.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc
Q 039407 53 GNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT 132 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~ 132 (397)
...|++++++.++.+++.|++ ++.|.||++|+.. ...|+|..|++|||+ ++.|++++|++|+++++|+.|++..
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 19 FYYDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred cCCCHHHHHHHHHHHHHcCCC---eeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCCCCC
Confidence 348999999999999886664 7899999999953 223589999999999 9999999999999999999987521
Q ss_pred c----------------------------------CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCC--------CCC
Q 039407 133 C----------------------------------SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYND--------GSK 170 (397)
Q Consensus 133 c----------------------------------~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~--------~~~ 170 (397)
. .-++|.+++++...++.+.++|||++|+|++..- +..
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~ 172 (308)
T cd06593 93 KSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSD 172 (308)
T ss_pred CchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCC
Confidence 0 0146788899988888889999999999998531 111
Q ss_pred c---cchHH-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 171 P---MDRYP-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 171 ~---~~~y~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
. ...|. .+.+++++. .|+++++-+.+... .+|+-.| +.|+...|+.+..++..
T Consensus 173 ~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 173 GEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred cceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHHH
Confidence 1 11222 244556543 35888875543221 2456666 89999999988766654
No 17
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.42 E-value=6e-12 Score=120.86 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=121.8
Q ss_pred CCCCCceEE--echhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCe--eecCCCCCCcHHHHH
Q 039407 37 LAETPAMGW--NSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNL--QARNTTFPSGIKALA 112 (397)
Q Consensus 37 ~~~~pp~Gw--nSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~--~~~~~~FP~Gl~~l~ 112 (397)
.++.||. | -.|...+...|++++++.++.+.+.+++ ++.|.||++|+.. .+++ ..|+++||+ .+.++
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i 72 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMI 72 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC---ccEEEECcccccC----CceeeeecChhhCCC-HHHHH
Confidence 3455664 3 2444444568999999999999997665 7999999999974 4555 899999999 99999
Q ss_pred HHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHH-HhcCCcEEEeeCCCCCCCC-----c-----------cchH
Q 039407 113 DYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTF-ASWGVDYLKYDNCYNDGSK-----P-----------MDRY 175 (397)
Q Consensus 113 ~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~~~~~~~-----~-----------~~~y 175 (397)
+++|++|+|+.+|+.|.+ ++++...++.+ .+.|||++|+|++...... . ...|
T Consensus 73 ~~l~~~g~~~~~~~~P~v----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y 142 (265)
T cd06589 73 DELHDNGVKLVLWIDPYI----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAY 142 (265)
T ss_pred HHHHHCCCEEEEEeChhH----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchh
Confidence 999999999999999865 57776666654 8999999999998542110 0 1122
Q ss_pred H-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHhh
Q 039407 176 P-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADEN 232 (397)
Q Consensus 176 ~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~ 232 (397)
. .+.+++++. .|+++++-+.+... .+|+-.| +.|+...|+.+..++...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs------qry~~~W--~GD~~stW~~l~~~i~~~ 199 (265)
T cd06589 143 PLLYAEATYEALRKNSKNKRPFILSRSGYAGS------QRYAGMW--SGDNTSTWGYLRSQIPAG 199 (265)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------cCcCcee--CCcccCCHHHHHHHHHHH
Confidence 2 234555433 46888776553321 2565555 789999999987666543
No 18
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.30 E-value=1.1e-10 Score=116.17 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
-|+++|++.++.+.+.+++ ++.|.||.+|+.. .+.+..|+++||+ .+.|++++|++|+|+-+|+.|.+..+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~~ 92 (339)
T cd06604 21 YPEEEVREIADEFRERDIP---CDAIYLDIDYMDG----YRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVDP 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECchhhCC----CCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCCC
Confidence 5899999999999987765 7999999999863 5778999999998 999999999999999999998653210
Q ss_pred ------------------------------------CCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCC---------
Q 039407 135 ------------------------------------KQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGS--------- 169 (397)
Q Consensus 135 ------------------------------------~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------- 169 (397)
-++|.+.+++....+.+.+.|||++|+|++.....
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p 172 (339)
T cd06604 93 GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMP 172 (339)
T ss_pred CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCC
Confidence 13577778888888888899999999999753100
Q ss_pred ------------Cc---cchHH-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHH
Q 039407 170 ------------KP---MDRYP-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMI 226 (397)
Q Consensus 170 ------------~~---~~~y~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~ 226 (397)
+. ...|. ...+++++. .|+++++-+.+... .+++-.| ++|+...|+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~ssW~~L~ 244 (339)
T cd06604 173 RDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGI------QRYAAVW--TGDNRSSWEHLR 244 (339)
T ss_pred ccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccc------ccccccc--CCcccCCHHHHH
Confidence 00 11222 233445433 37888765443221 2455555 789999999887
Q ss_pred HHHHh
Q 039407 227 SRADE 231 (397)
Q Consensus 227 ~~~~~ 231 (397)
.++..
T Consensus 245 ~~i~~ 249 (339)
T cd06604 245 LSIPM 249 (339)
T ss_pred HHHHH
Confidence 66653
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.30 E-value=1.1e-10 Score=115.07 Aligned_cols=166 Identities=14% Similarity=0.214 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC 133 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 133 (397)
..+|++|++.++.+.+.+++ ++.|.||++|++........+..|+++||+ .+.|+++||++|+|+.+|+.|.+..+
T Consensus 25 ~~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 25 PDAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred ccHHHHHHHHHHHHHHcCCC---eeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 35699999999999987765 799999999987422234568889999998 99999999999999999999975211
Q ss_pred ------------------C-----------------CCCCCccchHHHHH-HHHHhcCCcEEEeeCCCCC----------
Q 039407 134 ------------------S-----------------KQMPGSLGYEDQDA-KTFASWGVDYLKYDNCYND---------- 167 (397)
Q Consensus 134 ------------------~-----------------~~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~---------- 167 (397)
. -++|.+++++...+ +.+.+.|||++|+|++...
T Consensus 101 ~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~ 180 (317)
T cd06599 101 HPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDG 180 (317)
T ss_pred CHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecC
Confidence 0 14677888887767 6678999999999998542
Q ss_pred -CCC-----ccchHH-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 168 -GSK-----PMDRYP-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 168 -~~~-----~~~~y~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
+.. ....|. ...+++++. .|++++.-+.+.. ..+|+-.| ++|+...|+.+..++..
T Consensus 181 ~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G------~qry~~~W--sGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 181 FGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG------IQRYAQTW--SGDNRTSWKTLRYNIAM 250 (317)
T ss_pred CCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc------ccCCcCee--CCCcccCHHHHHHHHHH
Confidence 000 011221 234455433 3678776544322 12566666 89999999988766654
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.25 E-value=2.4e-10 Score=112.57 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCC--CCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDR--DEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT 132 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~r--d~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~ 132 (397)
-|++++++.++.+.+.+++ ++.|.||.+|+.... ...|++..|+++||+ .+.|++++|++|+|+.+|+.|.+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCcccC
Confidence 5899999999999987665 799999999986432 246789999999999 9999999999999999999987421
Q ss_pred c-----------------------------------CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCC--------
Q 039407 133 C-----------------------------------SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGS-------- 169 (397)
Q Consensus 133 c-----------------------------------~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~-------- 169 (397)
. .-++|.+++++...++.+.+.|||++|.|++.....
T Consensus 97 ~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~ 176 (317)
T cd06598 97 NSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHHK 176 (317)
T ss_pred CchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccCC
Confidence 1 014688888888888888999999999999964210
Q ss_pred -Cc---cchHH-----HHHHHHHh---cCCCeEEEecCCCCCCcccccccccC-eEeecCCCCCchHHHHHHHHh
Q 039407 170 -KP---MDRYP-----VMTRALMN---TGRPIYYSLCEWGDMHPALWGDKVGN-SWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 170 -~~---~~~y~-----~m~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~~~~~~~~~ 231 (397)
.. ...|. .+.+++++ ..||++++-+.+... .+|+. .| ++|+...|+.+..++..
T Consensus 177 g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~~W--sGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 177 GKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGS------QRYGVIPW--SGDVGRTWDGLKSQPNA 243 (317)
T ss_pred CcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCcc------ccCcCCcc--CCCCcCCHHHHHHHHHH
Confidence 00 11232 23445543 246787765443211 24543 45 78999999988776654
No 21
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.22 E-value=3.8e-10 Score=120.88 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=123.1
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 51 FWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
+..+.+|+.|++.++.+.+.+++ ++.|.+|+.|+... ..++++.|+++||+ .+.|++++|++|+|+.+|+.|++
T Consensus 276 ~~~~~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~~--~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 276 FTTNYDEATVNSFIDGMAERDLP---LHVFHFDCFWMKEF--QWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred cccCCCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcCC--ceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCc
Confidence 44457899999999999997775 79999999998631 24678999999999 99999999999999999999975
Q ss_pred cc--------------c--------------------CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCC--------CC
Q 039407 131 YT--------------C--------------------SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYN--------DG 168 (397)
Q Consensus 131 ~~--------------c--------------------~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~--------~~ 168 (397)
.. | .-++|.+++++...++.+.+.|||.+|.|+... .+
T Consensus 350 ~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G 429 (665)
T PRK10658 350 AQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDG 429 (665)
T ss_pred CCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCC
Confidence 21 0 014688899998888889999999999998642 11
Q ss_pred CCc---cchHH-----HHHHHHHh-c--CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 169 SKP---MDRYP-----VMTRALMN-T--GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 169 ~~~---~~~y~-----~m~~al~~-~--g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
.++ ...|. ...+++++ . .|+++++-|.+.+. .+|+-.| ++|+...|+.+..++..
T Consensus 430 ~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGs------Qry~~~W--sGD~~stw~~l~~si~~ 495 (665)
T PRK10658 430 SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGG------QQFPVHW--GGDCYSNYESMAESLRG 495 (665)
T ss_pred CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCC------CCCCCEE--CCCCCCCHHHHHHHHHH
Confidence 111 11222 24455654 2 36888876654321 2566566 89999999998766643
No 22
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.21 E-value=9.3e-10 Score=108.86 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc--
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT-- 132 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~-- 132 (397)
-|+++|++.++.+.+.+++ ++.|.+|..|+. ..+.++.|+++||+ .+.|+++||++|+|..+++.|++..
T Consensus 21 ~~~~ev~~v~~~~r~~~IP---~D~i~lDidy~~----~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~ 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIP---LDGLHVDVDFQD----NYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGG 92 (332)
T ss_pred CCHHHHHHHHHHHHHcCCC---CceEEEcCchhc----CCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCc
Confidence 4899999999999997665 799999999986 36789999999999 9999999999999999999997641
Q ss_pred --cC------CCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCC---------C--------Cc-------------cch
Q 039407 133 --CS------KQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDG---------S--------KP-------------MDR 174 (397)
Q Consensus 133 --c~------~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~---------~--------~~-------------~~~ 174 (397)
+. -++|.++++.....+.+.+-|||+++.|++.... . .. ...
T Consensus 93 ~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~ 172 (332)
T cd06601 93 GLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNL 172 (332)
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhh
Confidence 11 2468888988888888888999999999864210 0 00 001
Q ss_pred HH-----HHHHHHHh-----cCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 175 YP-----VMTRALMN-----TGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 175 y~-----~m~~al~~-----~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
|. ...+++++ ..||++++-+.+.+. .+|+..| ++|+...|+.+..++..
T Consensus 173 Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGs------qrY~~~W--sGDn~stW~~L~~si~~ 231 (332)
T cd06601 173 YSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGM------QRFAGLW--TGDNSSSWDFLQINIAQ 231 (332)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCcc------CCcCcee--CCCcccCHHHHHHHHHH
Confidence 21 23344432 247888876653321 3677777 89999999988766543
No 23
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.20 E-value=9.4e-10 Score=108.37 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc-
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC- 133 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c- 133 (397)
-|++++++.++.+.+.+++ ++.|.||..|++. .+.+..|+++||+ .+.|++++|++|+|+-+|+.|++...
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~~ 92 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMDS----YRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVDQ 92 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---cceEEEChhhhCC----CCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 4899999999999886665 7999999999863 5778899999998 99999999999999999999875211
Q ss_pred -----------------------------C------CCCCCccchHHHHHHHHH-hcCCcEEEeeCCCCCCC-CccchHH
Q 039407 134 -----------------------------S------KQMPGSLGYEDQDAKTFA-SWGVDYLKYDNCYNDGS-KPMDRYP 176 (397)
Q Consensus 134 -----------------------------~------~~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~-~~~~~y~ 176 (397)
+ -++|.+++++...++.+. +.|||++|.|++..... .....|.
T Consensus 93 ~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~ 172 (317)
T cd06600 93 NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYG 172 (317)
T ss_pred CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhh
Confidence 0 146777888877777764 99999999999865321 1111222
Q ss_pred -----HHHHHHHh---cCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 177 -----VMTRALMN---TGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 177 -----~m~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
...+++++ ..|+++++-+.+... .+++-.| ++|+...|+.+..++..
T Consensus 173 ~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~~ 227 (317)
T cd06600 173 LYEAMATAEGFRTSHPRNRIFILTRSGFAGS------QKYAAIW--TGDNTASWDDLKLSIPL 227 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecccccc------CCccceE--CCcccccHHHHHHHHHH
Confidence 13344443 347888886654321 2455555 78999999988766654
No 24
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.19 E-value=7.2e-10 Score=107.96 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC-----CCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD-----RDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAG 129 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~-----rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg 129 (397)
.|+++|++.|+.+.+.+++ ++.|.||..|+... .+..++++.|+++||+ .+.|+++||++|+|+-+|+.|.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCC
Confidence 5899999999999997776 79999999998632 2356789999999999 9999999999999999999996
Q ss_pred ccc--c-----------------------CCCCCCccchH-HHHHHHHHhcCCcEEEeeCCCCCC-----CCccchHHH-
Q 039407 130 YYT--C-----------------------SKQMPGSLGYE-DQDAKTFASWGVDYLKYDNCYNDG-----SKPMDRYPV- 177 (397)
Q Consensus 130 ~~~--c-----------------------~~~~pg~~~~~-~~~~~~~~~wGvdylK~D~~~~~~-----~~~~~~y~~- 177 (397)
... . ..++|....++ +...+.+.+.|||++|.|++.... ......+..
T Consensus 98 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~ 177 (292)
T cd06595 98 DGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHV 177 (292)
T ss_pred cccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHH
Confidence 310 0 11356666544 555677889999999999875321 111100011
Q ss_pred HHHHHH-hcCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHH
Q 039407 178 MTRALM-NTGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRAD 230 (397)
Q Consensus 178 m~~al~-~~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~ 230 (397)
..+... ...|+++++-+.+.. ..+|+-.| ++|+...|+.+..++.
T Consensus 178 ~y~~~~~~~~r~f~lsRs~~~G------~qry~~~W--sGD~~s~W~~l~~~i~ 223 (292)
T cd06595 178 HYLDSARNGRRPLIFSRWAGLG------SHRYPIGF--SGDTIISWASLAFQPY 223 (292)
T ss_pred HHHHhhccCCCcEEEEeecccC------CCcCCCcc--CCCcccCHHHHHHHHH
Confidence 111111 346888887654322 13677777 8999999998865543
No 25
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.19 E-value=1.7e-10 Score=118.46 Aligned_cols=162 Identities=23% Similarity=0.369 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
-|++++++.++.+.+.++. ++.++||+.|+.. .+++..|+++||+ ++.+++.+|++|+|+++|+.|++..+.
T Consensus 40 ~~~~~v~~~i~~~~~~~iP---~d~~~iD~~~~~~----~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIP---LDVIWIDDDYQDG----YGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp TSHHHHHHHHHHHHHTT-----EEEEEE-GGGSBT----TBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CCHHHHHHHHHHHHHcCCC---ccceecccccccc----ccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 5699999999999886654 7999999999974 5678999999998 999999999999999999999653221
Q ss_pred C-------------------------------------CCCCccchHHHHHHHHHhc-CCcEEEeeCCCCCC-------C
Q 039407 135 K-------------------------------------QMPGSLGYEDQDAKTFASW-GVDYLKYDNCYNDG-------S 169 (397)
Q Consensus 135 ~-------------------------------------~~pg~~~~~~~~~~~~~~w-GvdylK~D~~~~~~-------~ 169 (397)
. ++|.+++++....+.+.+. |||++|+|++.... .
T Consensus 112 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~ 191 (441)
T PF01055_consen 112 PDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLP 191 (441)
T ss_dssp TB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBC
T ss_pred CcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCc
Confidence 1 2466678887777776666 99999999965432 0
Q ss_pred ------C------ccchHHH-----HHHHHHh---cCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHH
Q 039407 170 ------K------PMDRYPV-----MTRALMN---TGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRA 229 (397)
Q Consensus 170 ------~------~~~~y~~-----m~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~ 229 (397)
. ....|.. ..+++++ ..|+++++-+.+.. ..+++..| ++|+...|+.+..++
T Consensus 192 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~w--~GD~~s~w~~L~~~i 263 (441)
T PF01055_consen 192 EDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGHW--SGDNSSSWDGLRSSI 263 (441)
T ss_dssp TTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEEE--ECSSBSSHHHHHHHH
T ss_pred ccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCccceee--cccccccHHHHHHHH
Confidence 0 0122322 3455544 35777776543321 12466665 789999999987776
Q ss_pred Hhh
Q 039407 230 DEN 232 (397)
Q Consensus 230 ~~~ 232 (397)
...
T Consensus 264 ~~~ 266 (441)
T PF01055_consen 264 PAM 266 (441)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 26
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.17 E-value=1.7e-09 Score=106.69 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
-|+++|++.++.+.+.+++ ++.|.||.+|+...+ .+++..|+++||+ .+.+++++|++|+|+-+|+.|++..+.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~~~--~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIP---LDVIVQDWFYWPKQG--WGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPET 94 (319)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEechhhcCCC--ceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCCC
Confidence 4999999999999886664 799999988875311 2489999999999 999999999999999999999753210
Q ss_pred ---------------------------------CCCCCccchHHHHH-HHHHhcCCcEEEeeCCCCCCC-----------
Q 039407 135 ---------------------------------KQMPGSLGYEDQDA-KTFASWGVDYLKYDNCYNDGS----------- 169 (397)
Q Consensus 135 ---------------------------------~~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~~~----------- 169 (397)
-++|.+++++...+ +.+.+.|||++|+|++.....
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~ 174 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYRY 174 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCccc
Confidence 13566777765444 457899999999999864210
Q ss_pred ---Cc---cchHH-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccC-eEeecCCCCCchHHHHHHHHh
Q 039407 170 ---KP---MDRYP-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGN-SWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 170 ---~~---~~~y~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~~~~~~~~~ 231 (397)
+. ...|. ...+++++. .|+++++-+.+... .+|+. .| ++|+...|+.+..++..
T Consensus 175 ~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gs------qry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 175 HLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGS------QRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEecccccc------ccccCcee--CCCccccHHHHHHHHHH
Confidence 00 11222 133455544 47888875443211 24653 45 68999999988766654
No 27
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=99.12 E-value=6.2e-09 Score=102.58 Aligned_cols=162 Identities=17% Similarity=0.286 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCC-----CeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKG-----NLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G-----~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
++++|++.++.+.+.+++ ++.|.|| .|+...-+..| ++..|+++||+ .+.|+++||++|+|+-+|+.|.+
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCce
Confidence 999999999999887765 7999999 58642112223 47899999999 99999999999999999999975
Q ss_pred ccc-C----------------------------------CCCCCccchHHHHHHHH-HhcCCcEEEeeCCCCC-------
Q 039407 131 YTC-S----------------------------------KQMPGSLGYEDQDAKTF-ASWGVDYLKYDNCYND------- 167 (397)
Q Consensus 131 ~~c-~----------------------------------~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~~~~------- 167 (397)
..- . -++|.++++....++.+ .+.|||++|.|+....
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~ 175 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLH 175 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceec
Confidence 210 0 13577888887777664 8999999999987531
Q ss_pred -CCCc---cchHHH-----HHHHHHhc---CCCeEEEecCCCCCCcccccccccC-eEeecCCCCCchH---HHHHHHH
Q 039407 168 -GSKP---MDRYPV-----MTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGN-SWRTTGDIEDTWD---SMISRAD 230 (397)
Q Consensus 168 -~~~~---~~~y~~-----m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~---~~~~~~~ 230 (397)
+.+. ...|.. ..+++++. +|+++++-+.+... .+|+. .| +.|+...|+ .+..++.
T Consensus 176 ~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gs------qry~~~~W--sGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 176 SGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGS------QKYSTLFW--AGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEccccccc------cccccccc--CCCCCCCCcCcccHHHHHH
Confidence 1111 112322 23344443 56777775543211 25665 35 689999997 3554443
No 28
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.12 E-value=4.6e-09 Score=104.41 Aligned_cols=166 Identities=16% Similarity=0.235 Sum_probs=111.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCC------------C-----CCCCeeecC-CCCCCcHHHHHHH
Q 039407 53 GNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDR------------D-----EKGNLQARN-TTFPSGIKALADY 114 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~r------------d-----~~G~~~~~~-~~FP~Gl~~l~~~ 114 (397)
...|+++|++.++.+.+.+++ ++.|.||+ |+.... + ..++...++ ++||+ .+.|+++
T Consensus 19 ~Y~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p~~mi~~ 93 (340)
T cd06597 19 EWDTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-PKGMIDE 93 (340)
T ss_pred CCCCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-HHHHHHH
Confidence 347899999999999997775 79999995 885210 1 123444443 68998 9999999
Q ss_pred HHhCCCeEEEEeeCCcccc-C-----------------------------------------CCCCCccchHHHHHHHHH
Q 039407 115 VHGKGLKLGIYSSAGYYTC-S-----------------------------------------KQMPGSLGYEDQDAKTFA 152 (397)
Q Consensus 115 i~~~Glk~Giw~~pg~~~c-~-----------------------------------------~~~pg~~~~~~~~~~~~~ 152 (397)
||++|+|+-+|+.|.+..+ . -++|.+.++....++.+-
T Consensus 94 Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~ 173 (340)
T cd06597 94 LHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLV 173 (340)
T ss_pred HHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999864210 0 034566777777777654
Q ss_pred -hcCCcEEEeeCCCCC---------CCCc---cchH-----HHHHHHHHhcC-CCeEEEecCCCCCCcccccccccCeEe
Q 039407 153 -SWGVDYLKYDNCYND---------GSKP---MDRY-----PVMTRALMNTG-RPIYYSLCEWGDMHPALWGDKVGNSWR 213 (397)
Q Consensus 153 -~wGvdylK~D~~~~~---------~~~~---~~~y-----~~m~~al~~~g-~~i~~~~c~~g~~~~~~~~~~~~~~~R 213 (397)
+.|||.+|+|+.... +... ...| +.+.+++++.+ |+++++-+.+... .+|+-.|
T Consensus 174 ~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs------qry~~~W- 246 (340)
T cd06597 174 DELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA------QAHGIFW- 246 (340)
T ss_pred HhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc------CCCccee-
Confidence 799999999987431 1111 1112 22445555555 6777765543221 2455455
Q ss_pred ecCCCCCchHHHHHHHHh
Q 039407 214 TTGDIEDTWDSMISRADE 231 (397)
Q Consensus 214 is~D~~~~w~~~~~~~~~ 231 (397)
++|+...|+.+..++..
T Consensus 247 -sGD~~s~W~~L~~~i~~ 263 (340)
T cd06597 247 -AGDENSTFGAFRWSVFA 263 (340)
T ss_pred -cCCCCCCHHHHHHHHHH
Confidence 78999999988766553
No 29
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.09 E-value=5.1e-09 Score=104.11 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcH--HHHHHHHHhCCCeEEEEeeCCccc
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGI--KALADYVHGKGLKLGIYSSAGYYT 132 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl--~~l~~~i~~~Glk~Giw~~pg~~~ 132 (397)
-++++|++.++.+.+.+++ ++.|.||.+|+.. .+++..|+++||+ . +.|+++||++|+|+-+|+.|++..
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~ 92 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISA 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECcccccC----ccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 4899999999999997765 7899999999864 5789999999999 7 999999999999999999987532
Q ss_pred c---C------------------------------------CCCCCccchHHHHHHH-HHhcCCcEEEeeCCCCCCC-Cc
Q 039407 133 C---S------------------------------------KQMPGSLGYEDQDAKT-FASWGVDYLKYDNCYNDGS-KP 171 (397)
Q Consensus 133 c---~------------------------------------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~~~~-~~ 171 (397)
- . -++|.+..++....+. +.+.|||++|.|++..... ..
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 172 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDV 172 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhh
Confidence 1 0 0246667777777766 5679999999999864311 11
Q ss_pred cchHH-----HHHHHHHh-c-CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHHHHHHh
Q 039407 172 MDRYP-----VMTRALMN-T-GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 172 ~~~y~-----~m~~al~~-~-g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~~~~~~ 231 (397)
...|. ...+++++ . .|+++++-+.+.+. .+|+-.| ++|+...|+.+..++..
T Consensus 173 hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~w--~GD~~s~W~~L~~~i~~ 231 (339)
T cd06602 173 HNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS------GRYAGHW--LGDNASTWEDLRYSIIG 231 (339)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc------cccceeE--CCCccCCHHHHHHHHHH
Confidence 11222 23445543 3 36777765543221 2455455 88999999987766553
No 30
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=99.07 E-value=8.4e-10 Score=105.52 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCee-ecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQ-ARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT 132 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~-~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~ 132 (397)
.+|.+..++.+|+. +++|++|+.||+||.....+...+.. +.+ . . .|+.|++|.++||+++-||..-....
T Consensus 28 g~~t~~~k~yIDfA-----a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~-~-~-dl~elv~Ya~~KgVgi~lw~~~~~~~ 99 (273)
T PF10566_consen 28 GATTETQKRYIDFA-----AEMGIEYVLVDAGWYGWEKDDDFDFTKPIP-D-F-DLPELVDYAKEKGVGIWLWYHSETGG 99 (273)
T ss_dssp SSSHHHHHHHHHHH-----HHTT-SEEEEBTTCCGS--TTT--TT-B-T-T----HHHHHHHHHHTT-EEEEEEECCHTT
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeccccccccccccccccccCC-c-c-CHHHHHHHHHHcCCCEEEEEeCCcch
Confidence 58999999999987 56788999999999853322222221 221 1 1 49999999999999999998763200
Q ss_pred cCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 133 CSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 133 c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
- . ......++..++++++|||..||+||+..++...+..|+.+.+. ++...++++.
T Consensus 100 ~--~-~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~--AA~~~Lmvnf 155 (273)
T PF10566_consen 100 N--V-ANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILED--AAEYKLMVNF 155 (273)
T ss_dssp B--H-HHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHH--HHHTT-EEEE
T ss_pred h--h-HhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHH--HHHcCcEEEe
Confidence 0 0 00223358889999999999999999988655445555554432 3445677775
No 31
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=99.03 E-value=2.5e-08 Score=99.24 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC 133 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 133 (397)
.-|++++++.++.+.+.+++ ++.|.||..|+.. .+.+..|+++||+ .+.|++++|++|+|+-+|+.|++..-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~~----~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTDG----KRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCC---ceEEEEChHHhCC----CCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceecC
Confidence 35899999999999997765 7999999999753 5678999999998 99999999999999999999875210
Q ss_pred ------------------------------------CCCCCCccchHHHHHHHHH---hcCCcEEEeeCCCCCC------
Q 039407 134 ------------------------------------SKQMPGSLGYEDQDAKTFA---SWGVDYLKYDNCYNDG------ 168 (397)
Q Consensus 134 ------------------------------------~~~~pg~~~~~~~~~~~~~---~wGvdylK~D~~~~~~------ 168 (397)
.-++|++++++...++.+. .-|++++++|++....
T Consensus 92 ~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~ 171 (339)
T cd06603 92 DGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPEL 171 (339)
T ss_pred CCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCC
Confidence 0146888888877776654 4799999999875320
Q ss_pred -C----------Cc---cchHH-----HHHHHHHhc----CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHH
Q 039407 169 -S----------KP---MDRYP-----VMTRALMNT----GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSM 225 (397)
Q Consensus 169 -~----------~~---~~~y~-----~m~~al~~~----g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~ 225 (397)
. .. ...|. ...+++++. .|+++++-+.+... .+|+..| ++|+...|+.+
T Consensus 172 ~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L 243 (339)
T cd06603 172 TMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS------QRYAAIW--TGDNTATWEHL 243 (339)
T ss_pred cCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc------cceeeee--CCCccCCHHHH
Confidence 0 00 11222 233455432 47877775543321 2455555 78999999988
Q ss_pred HHHHHh
Q 039407 226 ISRADE 231 (397)
Q Consensus 226 ~~~~~~ 231 (397)
..++..
T Consensus 244 ~~~i~~ 249 (339)
T cd06603 244 KISIPM 249 (339)
T ss_pred HHHHHH
Confidence 766553
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.01 E-value=6.8e-09 Score=112.54 Aligned_cols=172 Identities=20% Similarity=0.287 Sum_probs=126.4
Q ss_pred eEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCc-cccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCe
Q 039407 43 MGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDC-WGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLK 121 (397)
Q Consensus 43 ~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdg-W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk 121 (397)
+| +.|-.....-+|+.+++.++.+.++. ..++.|.+|.. |.+ ..+.++.|+.+||+ .+.|++++|++|+|
T Consensus 266 ~G-~~~~~~~~~~~e~~v~~~i~~~~~~~---IP~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gik 336 (772)
T COG1501 266 LG-WLWTSRYTYYDEDEVLEFIDEMRERD---IPLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIK 336 (772)
T ss_pred cC-CCceeccccccHHHHHHHHhhccccc---CcceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCce
Confidence 67 33333444678999999999997744 44899999986 875 46789999999999 99999999999999
Q ss_pred EEEEeeCCccc--------------------------cC--------CCCCCccchHHH-HHHHHHhcCCcEEEeeCCCC
Q 039407 122 LGIYSSAGYYT--------------------------CS--------KQMPGSLGYEDQ-DAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 122 ~Giw~~pg~~~--------------------------c~--------~~~pg~~~~~~~-~~~~~~~wGvdylK~D~~~~ 166 (397)
+-+|+.|.... |. .++|.++.+... ..+.+.+.||+.+|.|++..
T Consensus 337 l~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp 416 (772)
T COG1501 337 LIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEP 416 (772)
T ss_pred EEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCC
Confidence 99999996421 10 147889999984 55779999999999999855
Q ss_pred CCC---------Cc---cchH-----HHHHHHHHhc---CCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHHHH
Q 039407 167 DGS---------KP---MDRY-----PVMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDSMI 226 (397)
Q Consensus 167 ~~~---------~~---~~~y-----~~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~~~ 226 (397)
.-. +. ...| +...+++++. .|+++|+-|.+.+. ..++-.| ++|+...|+++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W--sGD~~s~wd~l~ 488 (772)
T COG1501 417 EPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGS------QRYAAHW--SGDNRSSWDSLR 488 (772)
T ss_pred ccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccc------eecccee--CCccccchHHHH
Confidence 311 10 1112 2355667655 48998887654321 2457777 899999999987
Q ss_pred HHHHh
Q 039407 227 SRADE 231 (397)
Q Consensus 227 ~~~~~ 231 (397)
.++..
T Consensus 489 ~si~~ 493 (772)
T COG1501 489 ESIPA 493 (772)
T ss_pred hhHHh
Confidence 76653
No 33
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.89 E-value=8.1e-08 Score=105.62 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc-
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC- 133 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c- 133 (397)
-|++++++.++.+.+.+++ ++.|.+|..|+.. .+.+..|+++||+ .+.|++++|++|+|.-.++.|++...
T Consensus 198 ~sq~eV~eva~~fre~~IP---~DvIwlDidYm~g----~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~ 269 (978)
T PLN02763 198 ESAKRVAEIARTFREKKIP---CDVVWMDIDYMDG----FRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEE 269 (978)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEehhhhcC----CCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCC
Confidence 4799999999999986665 7999999999753 4568999999998 99999999999999987778865310
Q ss_pred -----------------------------------CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCC---------
Q 039407 134 -----------------------------------SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGS--------- 169 (397)
Q Consensus 134 -----------------------------------~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------- 169 (397)
.-++|.+++|.....+.|.+.|||+++.|++.....
T Consensus 270 gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~ 349 (978)
T PLN02763 270 GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPE 349 (978)
T ss_pred CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCc
Confidence 013577788888888888899999999999753110
Q ss_pred ------C-------c----cchHH-----HHHHHHHh---cCCCeEEEecCCCCCCcccccccccCeEeecCCCCCchHH
Q 039407 170 ------K-------P----MDRYP-----VMTRALMN---TGRPIYYSLCEWGDMHPALWGDKVGNSWRTTGDIEDTWDS 224 (397)
Q Consensus 170 ------~-------~----~~~y~-----~m~~al~~---~g~~i~~~~c~~g~~~~~~~~~~~~~~~Ris~D~~~~w~~ 224 (397)
. . ...|. ...+++++ ..||++++-+.+.+. .+|+..| ++|+...|+.
T Consensus 350 ~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGs------QRYaa~W--tGDn~SsWe~ 421 (978)
T PLN02763 350 TNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGS------QRYAATW--TGDNLSNWEH 421 (978)
T ss_pred cccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcC------CCCceEE--CCCccCCHHH
Confidence 0 0 01121 12234433 248888876554321 2566677 8999999998
Q ss_pred HHHHHH
Q 039407 225 MISRAD 230 (397)
Q Consensus 225 ~~~~~~ 230 (397)
+..++.
T Consensus 422 L~~sI~ 427 (978)
T PLN02763 422 LHMSIP 427 (978)
T ss_pred HHHHHH
Confidence 765554
No 34
>PRK10426 alpha-glucosidase; Provisional
Probab=98.79 E-value=1.7e-07 Score=100.29 Aligned_cols=162 Identities=14% Similarity=0.241 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCC-----CCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEK-----GNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~-----G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
+++++++.++.+.+.+++ ++.|.|| .|+....... ++|..|+++||+ .+.|++++|++|+|+-+|+.|+.
T Consensus 219 ~~~~v~~v~~~~r~~~IP---~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v 293 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVK---VNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYL 293 (635)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEe-cccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCcc
Confidence 688999999999887665 6889998 4985422222 357889999999 99999999999999999999964
Q ss_pred cc-------------------------------cC---CCCCCccchHHHHH-HHHHhcCCcEEEeeCCCCC--------
Q 039407 131 YT-------------------------------CS---KQMPGSLGYEDQDA-KTFASWGVDYLKYDNCYND-------- 167 (397)
Q Consensus 131 ~~-------------------------------c~---~~~pg~~~~~~~~~-~~~~~wGvdylK~D~~~~~-------- 167 (397)
.. |. -++|.+++++...+ +.+.+.|||.+|.|+...-
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~ 373 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHN 373 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeC
Confidence 21 10 14688888887766 4688999999999997531
Q ss_pred CCCc---cchHH-----HHHHHHHhc---CCCeEEEecCCCCCCcccccccccC-eEeecCCCCCchH---HHHHHHH
Q 039407 168 GSKP---MDRYP-----VMTRALMNT---GRPIYYSLCEWGDMHPALWGDKVGN-SWRTTGDIEDTWD---SMISRAD 230 (397)
Q Consensus 168 ~~~~---~~~y~-----~m~~al~~~---g~~i~~~~c~~g~~~~~~~~~~~~~-~~Ris~D~~~~w~---~~~~~~~ 230 (397)
+... ...|. ...+++++. +|+++++-+.+.. ..+|+. .| ++|+...|+ .+..++.
T Consensus 374 g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aG------sQry~~~~W--sGD~~ssW~~~d~L~~~I~ 443 (635)
T PRK10426 374 GVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTG------SQKYSTLFW--AGDQNVDWSLDDGLASVVP 443 (635)
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCC------cCCcccccc--CCCCCCcCcChhHHHHHHH
Confidence 1111 11232 233555543 4788886544321 125654 46 789999995 4554443
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.00011 Score=79.02 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=88.8
Q ss_pred Eechhhhc--cCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeE
Q 039407 45 WNSWNHFW--GNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKL 122 (397)
Q Consensus 45 wnSW~~~~--~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~ 122 (397)
|.-|..+. ...|...+++.++.+.+.|+ +++.+.+|.-|++ .+++++.|+.+||. ++.+++.||++|+|.
T Consensus 296 WslGf~~~RwgY~nls~~~dvv~~~~~agi---Pld~~~~DiDyMd----~ykDFTvd~~~fp~-~~~fv~~Lh~~G~ky 367 (805)
T KOG1065|consen 296 WSLGFQLCRWGYKNLSVVRDVVENYRAAGI---PLDVIVIDIDYMD----GYKDFTVDKVWFPD-LKDFVDDLHARGFKY 367 (805)
T ss_pred hhccceecccccccHHHHHHHHHHHHHcCC---Ccceeeeehhhhh----cccceeeccccCcc-hHHHHHHHHhCCCeE
Confidence 88886555 24899999999999877444 5789999999986 47889999999999 999999999999999
Q ss_pred EEEeeCCccc-cC-------------------------C-----------CCCCccchHHHHHHHH-HhcCCcEEEeeCC
Q 039407 123 GIYSSAGYYT-CS-------------------------K-----------QMPGSLGYEDQDAKTF-ASWGVDYLKYDNC 164 (397)
Q Consensus 123 Giw~~pg~~~-c~-------------------------~-----------~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 164 (397)
-++++|++.+ |. . ++|.+..+...-++.| .+-+||.+++|..
T Consensus 368 vliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 368 VLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred EEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECC
Confidence 9999997521 11 0 1344556666666666 4889999999995
Q ss_pred C
Q 039407 165 Y 165 (397)
Q Consensus 165 ~ 165 (397)
.
T Consensus 448 E 448 (805)
T KOG1065|consen 448 E 448 (805)
T ss_pred C
Confidence 3
No 36
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.51 E-value=0.0012 Score=62.71 Aligned_cols=137 Identities=19% Similarity=0.383 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
-.+..+++.+|..++..++ ..+|+-+||+... . +-|+.++++++++|++.|||+.-+
T Consensus 42 ~~~~~a~~~~~~y~~~~~p---lgw~lpndgyg~~------y---------~~l~~~~~~~~~~g~~~glwt~~~----- 98 (261)
T cd06596 42 STTDDARKVADKYKENDMP---LGWMLPNDGYGCG------Y---------ENLKEVVDYLHANGVETGLWTQSG----- 98 (261)
T ss_pred cchhhHHHHHHHHHhcCCC---ceeeccCCCCcch------H---------HHHHHHHHHHHHcCCccccccccc-----
Confidence 3445677888888775554 5789999998752 2 239999999999999999996632
Q ss_pred CCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCc--cchHHHHHHHHHh--cCCCeEEEecCCCCCCcccccccccC
Q 039407 135 KQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKP--MDRYPVMTRALMN--TGRPIYYSLCEWGDMHPALWGDKVGN 210 (397)
Q Consensus 135 ~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~--~~~y~~m~~al~~--~g~~i~~~~c~~g~~~~~~~~~~~~~ 210 (397)
++...+....-|+.++|+|---.+.... ...-+...+++++ ..||++++.|.|... .+++-
T Consensus 99 ---------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs------QRy~~ 163 (261)
T cd06596 99 ---------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT------QRYAG 163 (261)
T ss_pred ---------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc------CCCCC
Confidence 2444455778899999999864432211 1112223344443 348999987765432 25666
Q ss_pred eEeecCCCCCchHHHHHHHHh
Q 039407 211 SWRTTGDIEDTWDSMISRADE 231 (397)
Q Consensus 211 ~~Ris~D~~~~w~~~~~~~~~ 231 (397)
.| ++|+...|+.+..++..
T Consensus 164 ~W--sGD~~stWe~Lr~sI~~ 182 (261)
T cd06596 164 IW--TGDQSGSWEYIRFHIPT 182 (261)
T ss_pred cc--CCCCcCcHHHHHHHHHH
Confidence 66 89999999998766654
No 37
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.52 E-value=0.32 Score=52.64 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=56.5
Q ss_pred CcccCceEEEe--------CCccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEeeCCc-----------
Q 039407 72 LAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSSAGY----------- 130 (397)
Q Consensus 72 l~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~pg~----------- 130 (397)
|+++||+.|.| +..|-- +..+...+++ +| |+.+|.|++.+|++|+++-|=+.+..
T Consensus 177 lk~lG~t~velmPv~e~~~~~~wGY---~~~~~~~~~~-~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 177 VTYMGYTHVELLGVMEHPFDGSWGY---QVTGYYAPTS-RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHcCCCEEEccchhcCCCCCCCCc---Cccccccccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 58889988876 222321 1123334442 44 45699999999999999764322210
Q ss_pred ---c---cc---------------CCCCCCccchHHHHHHH-HHhcCCcEEEeeCCC
Q 039407 131 ---Y---TC---------------SKQMPGSLGYEDQDAKT-FASWGVDYLKYDNCY 165 (397)
Q Consensus 131 ---~---~c---------------~~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~ 165 (397)
. .+ ...+|+++.|+-..++. +.+.+||.+.+|...
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~ 309 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVA 309 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeeh
Confidence 0 00 01246778888777776 479999999999753
No 38
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=95.88 E-value=2.8 Score=43.81 Aligned_cols=110 Identities=11% Similarity=0.020 Sum_probs=57.2
Q ss_pred cCCeeeccCCCCCC-----hhHHhhhcChhhhhhccC-CCCCceEEeeecCCeeEEEEEcCCC-CEEEEEEEcCC-CceE
Q 039407 273 KAPLLLGCDVRNMT-----DDTLEIVGNKEVIAVNQD-PLGIQAKKVRWEGDQEVWAAPLSGY-RIALLLVNRGP-WRYA 344 (397)
Q Consensus 273 gspL~is~dl~~l~-----~~~~~ll~N~~liainqd-~lg~~~~~v~~~~~~~vw~~~l~~g-~~~va~fN~~~-~~~~ 344 (397)
|.|++.-+|--.+. .+..+.++ .||++.+. +.|.+ ..+..+++.-++.|...++ ..+|+++|.+. ...+
T Consensus 359 GiP~IYYGdE~g~~g~~~~~~l~~~i~--~Li~lRk~~~~G~~-~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~ 435 (479)
T PRK09441 359 GYPCVFYGDYYGASGYYIDMPFKEKLD--KLLLARKNFAYGEQ-TDYFDHPNCIGWTRSGDEENPGLAVVISNGDAGEKT 435 (479)
T ss_pred CceeeEeccccCCCCCcccchHHHHHH--HHHHHHHHhCCCCe-eEeecCCCEEEEEEecCCCCccEEEEEECCCCCcEE
Confidence 78888666633222 22333342 35555432 12322 2233345566777766543 34566665554 3333
Q ss_pred EEEeccccCCCCCCeeEEEEcCCCcccc-e-eeeeeEEEEEcCCcEEEE
Q 039407 345 VTAKWEDIGIPPNSVVEARDLWEHKTLT-K-QFVGNLSAMVGSHACKMY 391 (397)
Q Consensus 345 ~~i~l~~lGl~~~~~~~v~DlWsg~~~~-g-~~~g~~~~~L~ph~~~ll 391 (397)
++++. ... + -..+|+-++.... . ...|.++++|++++++|+
T Consensus 436 ~~~~~---~~~-~--~~~~d~~~~~~~~~~~~~~G~~~~~l~~~s~~i~ 478 (479)
T PRK09441 436 MEVGE---NYA-G--KTWRDYTGNRQETVTIDEDGWGTFPVNGGSVSVW 478 (479)
T ss_pred EEeCc---cCC-C--CEeEhhhCCCCCeEEECCCCeEEEEECCceEEEe
Confidence 44421 121 1 3566766555320 1 124678999999999987
No 39
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.84 E-value=3.4 Score=44.49 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCe-----eecCCCCCC--cHHHHHHHHHhCCCeEEEEeeC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNL-----QARNTTFPS--GIKALADYVHGKGLKLGIYSSA 128 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~-----~~~~~~FP~--Gl~~l~~~i~~~Glk~Giw~~p 128 (397)
+-+.|.+.++.| +++|++.|-|=-=.... ...|++ .+|| .|-+ .++.|++.+|++|||+-|=+.+
T Consensus 177 Dl~GI~~kLdYL-----~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 177 DLDGISEKLPYL-----KKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEeCCcccCC--CCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 567788888886 77888877663322221 112222 2343 3322 4899999999999997543221
Q ss_pred C------------------------c-------------cccC----------CCCCCccchHHH----HHHH-HHh-cC
Q 039407 129 G------------------------Y-------------YTCS----------KQMPGSLGYEDQ----DAKT-FAS-WG 155 (397)
Q Consensus 129 g------------------------~-------------~~c~----------~~~pg~~~~~~~----~~~~-~~~-wG 155 (397)
- . ..|- ..+|.+++++.. .++. +++ .|
T Consensus 249 NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~g 328 (598)
T PRK10785 249 NHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYN 328 (598)
T ss_pred CcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCC
Confidence 0 0 0010 013556666642 4554 343 79
Q ss_pred CcEEEeeCCCCCCC-----CccchHHHHHHHHHhcCCCeEEEecCCC
Q 039407 156 VDYLKYDNCYNDGS-----KPMDRYPVMTRALMNTGRPIYYSLCEWG 197 (397)
Q Consensus 156 vdylK~D~~~~~~~-----~~~~~y~~m~~al~~~g~~i~~~~c~~g 197 (397)
||.+.+|....-.. ...+..+.+++++++..++.++-.-.|.
T Consensus 329 iDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 329 IDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred CcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 99999998743111 1234456688888888877665433343
No 40
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.61 E-value=4.3 Score=44.02 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=59.2
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeCCccccCC-----CCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEee
Q 039407 56 NEDIIKAA-ADALVSSGLAKLGYIYVNIDDCWGEQD-----RDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSS 127 (397)
Q Consensus 56 ~e~~i~~~-ad~l~~~gl~~~Gy~~i~iDdgW~~~~-----rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~ 127 (397)
|-+.+.+. ++.+ +++|++.|.|=-=++... -+..+...+++ +| |+.+|.|++.+|++||++-|=+.
T Consensus 168 ~~~~~~~~ll~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYV-----KEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33444444 3654 788888887622111110 11122333442 33 34699999999999999754332
Q ss_pred CCc---------c-----c------------------cCCCCCCccchHHHHHHHH-HhcCCcEEEeeCC
Q 039407 128 AGY---------Y-----T------------------CSKQMPGSLGYEDQDAKTF-ASWGVDYLKYDNC 164 (397)
Q Consensus 128 pg~---------~-----~------------------c~~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 164 (397)
+.. . . +...+|+++.|+...++.+ ++.|||.+.+|..
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 210 0 0 0012466777777777664 6789999999965
No 41
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.20 E-value=0.16 Score=54.71 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=64.7
Q ss_pred CHHHHHHHH-HHHHHcCCcccCceEEEe--------CCccccCCCCCCCCeeecCCCCC--CcHHHHHHHHHhCCCeEEE
Q 039407 56 NEDIIKAAA-DALVSSGLAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTFP--SGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 56 ~e~~i~~~a-d~l~~~gl~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 124 (397)
|.+.+.+.. +.+ +++|++.|.| +..|.- +..+...+++ +|- +.||.|++.+|++||++-|
T Consensus 154 ~~~~i~~~l~dyl-----~~LGvt~i~L~Pi~e~~~~~~wGY---~~~~y~~~~~-~~Gt~~dlk~lV~~~H~~Gi~Vil 224 (613)
T TIGR01515 154 SYRELADQLIPYV-----KELGFTHIELLPVAEHPFDGSWGY---QVTGYYAPTS-RFGTPDDFMYFVDACHQAGIGVIL 224 (613)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCC---CcccCccccc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 455555553 654 8889999988 222321 1223344543 553 3599999999999999887
Q ss_pred EeeCCcc------------------cc--------------CCCCCCccchHHHHHHHH-HhcCCcEEEeeCC
Q 039407 125 YSSAGYY------------------TC--------------SKQMPGSLGYEDQDAKTF-ASWGVDYLKYDNC 164 (397)
Q Consensus 125 w~~pg~~------------------~c--------------~~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 164 (397)
-+.+... .+ ...+|.++.|+...++.+ .++|||.+.+|..
T Consensus 225 D~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 225 DWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred EecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 7644100 00 012466778887777764 6899999999985
No 42
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=94.95 E-value=0.041 Score=40.15 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEE
Q 039407 327 SGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYI 392 (397)
Q Consensus 327 ~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~ 392 (397)
.++..++.++|.++++++++++- ..+|+.+|+... +. ++|+|+++++|+
T Consensus 9 ~~~~~y~F~~N~s~~~~~v~l~~-----------~~~dll~g~~~~----~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 9 NDGGRYLFLLNFSDEPQTVTLPE-----------SYTDLLTGETVS----GG--LTLPPYGVRVLK 57 (58)
T ss_dssp --ETTEEEEEE-SSS-EE----T-----------T-EEEES-------------SEE-TTEEEEEE
T ss_pred cCCCEEEEEEECCCCCEEEEcCC-----------CceecccCccee----eE--EEECCCEEEEEE
Confidence 34457899999999999888732 358999999652 32 899999999987
No 43
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=94.68 E-value=0.45 Score=37.87 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=45.9
Q ss_pred CCeeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccc--ee-----------eeeeEEEEE
Q 039407 317 GDQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLT--KQ-----------FVGNLSAMV 383 (397)
Q Consensus 317 ~~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~--g~-----------~~g~~~~~L 383 (397)
...-+|.|..+++..+|+++|.++......+ .+|++.+ -+.+++.+..... |. ..|.++++|
T Consensus 9 ~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~---~~~~p~~--g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~l 83 (95)
T PF02806_consen 9 NNVIAFERKDKGDDRVLVVFNFSPEAVYEDY---RIGVPEA--GRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTL 83 (95)
T ss_dssp SSEEEEEETTTETTEEEEEEESSSS-EEEEE---EECSSSS--EEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEE
T ss_pred CCEEEEEEcCCCCCEEEEEEECCCcccceeE---EeCCCCc--ceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEE
Confidence 3455667764333378999999887333333 3355532 3456777664321 11 246789999
Q ss_pred cCCcEEEEEEE
Q 039407 384 GSHACKMYILK 394 (397)
Q Consensus 384 ~ph~~~ll~l~ 394 (397)
||.++.+|++.
T Consensus 84 p~~s~~vl~~~ 94 (95)
T PF02806_consen 84 PPYSALVLKLK 94 (95)
T ss_dssp STTEEEEEEEE
T ss_pred CCCEEEEEEEc
Confidence 99999999986
No 44
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.49 E-value=5.6 Score=46.18 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=54.6
Q ss_pred CcccCceEEEe--------CCccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEeeCCc-----------
Q 039407 72 LAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSSAGY----------- 130 (397)
Q Consensus 72 l~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~pg~----------- 130 (397)
|+++||+.|.| |..|-- +..+...|++ +| |+.+|.|++.+|++||++-|=+-+..
T Consensus 775 lk~LGvt~IeLmPv~e~p~~~swGY---~~~~y~ap~~-ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 775 VKWLGFTHVEFMPVAEHPFGGSWGY---QVTSYFAPTS-RFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHhCCCEEEECccccCCCCCCCCC---CccccCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 47889988866 222421 1122333332 33 45799999999999999765433310
Q ss_pred -cc-------cC-------------CCCCCccchHHHHHHH-HHhcCCcEEEeeCC
Q 039407 131 -YT-------CS-------------KQMPGSLGYEDQDAKT-FASWGVDYLKYDNC 164 (397)
Q Consensus 131 -~~-------c~-------------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~ 164 (397)
.+ +. ..+|.++.|+-..+.. +.+++||.|.+|..
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 00 00 0135566677655655 57999999999985
No 45
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=92.66 E-value=0.76 Score=35.78 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=43.3
Q ss_pred cCCeeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccC--CCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEE
Q 039407 316 EGDQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIG--IPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYIL 393 (397)
Q Consensus 316 ~~~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lG--l~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l 393 (397)
..+..+..|...+ ..++++.|-++++++ +++++.- +. ..-+.+|+-||+++ ..+. +++|+|.++.+|.+
T Consensus 8 ~~gvYvYfR~~~~-~tVmVilN~n~~~~~--ldl~ry~E~l~--~~~~~~diltg~~i--~l~~--~l~l~~~~~~ILel 78 (78)
T PF10438_consen 8 QDGVYVYFRYYDG-KTVMVILNKNDKEQT--LDLKRYAEVLG--GFTSAKDILTGKTI--DLSK--NLTLPPKSVLILEL 78 (78)
T ss_dssp BTTEEEEEEEESS-EEEEEEEE-SSS-EE--EEGGGGHHHHT--T--EEEETTT--EE--E-SS--EEEE-TTEEEEEEE
T ss_pred cCCEEEEEEEcCC-CEEEEEEcCCCCCeE--EcHHHHHHhhC--CCcceEECCCCCEE--ecCC--cEEECCCceEEEEC
Confidence 3457788887644 478899998887654 5555441 22 22478999999986 3443 68999999999875
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=91.82 E-value=1.2 Score=43.95 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeec-----------CCCCCCcHHHHHHHHHhCCCeEEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQAR-----------NTTFPSGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~-----------~~~FP~Gl~~l~~~i~~~Glk~Gi 124 (397)
+++.+.+.++.+ +..|++.++||= -|.+|.+..+ ...+...++.|++.+|++|+.+--
T Consensus 11 ~~~~~~~~~~~i-----~~t~lNavVIDv------Kdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 11 SPERLDKLLDLI-----KRTELNAVVIDV------KDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CHHHHHHHHHHH-----HhcCCceEEEEE------ecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 456777778876 455668899971 2334444321 122323499999999999998877
Q ss_pred EeeCCcc---------------------------ccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCC
Q 039407 125 YSSAGYY---------------------------TCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYND 167 (397)
Q Consensus 125 w~~pg~~---------------------------~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 167 (397)
++..|-. ...++.+.+.+|.-..++..++.|||-|-+|++...
T Consensus 80 RIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 80 RIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFP 149 (316)
T ss_pred EEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecC
Confidence 7654421 001234567788888888999999999999998553
No 47
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=90.76 E-value=1.3 Score=46.87 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=49.9
Q ss_pred CeeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccceeee-eeEEEEEcCCcEEEEEE
Q 039407 318 DQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFV-GNLSAMVGSHACKMYIL 393 (397)
Q Consensus 318 ~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~-g~~~~~L~ph~~~ll~l 393 (397)
..-++.+... ++.+++++|.++.++++++++... . +. ...|+.+++.. -... +.+.++|+|+++.+|++
T Consensus 469 ~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~--~--~~-~~~dl~~~~~~-~~~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 469 RVLAFLREYE-GERVLCVFNFSRNPQAVELDLSEF--A--GR-VPVELIGGAPF-PPVGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred CEEEEEEEcC-CcEEEEEEeCCCCCEEeecccccc--c--cC-cceecccCCcc-ccccCCcceEEECCceEEEEEe
Confidence 3566667655 457899999999989888877543 1 11 25889988864 2233 34889999999999986
No 48
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=89.26 E-value=3.3 Score=33.18 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred eeecCCeeEEEEEcCCCCEEEEEEEcCC-CceEEEEeccccCCCCCCeeEEEEcCCCccccee-eeeeEEEEEcCCcEEE
Q 039407 313 VRWEGDQEVWAAPLSGYRIALLLVNRGP-WRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQ-FVGNLSAMVGSHACKM 390 (397)
Q Consensus 313 v~~~~~~~vw~~~l~~g~~~va~fN~~~-~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~-~~g~~~~~L~ph~~~l 390 (397)
++.++..-++.|.-.+.+..+++.|.+. ....+++.++..|+.++ -.+.|+++.++. .+ ..|.+++++....-++
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g--~~v~dVlsc~~~-tv~~~G~l~v~m~~G~P~V 78 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAG--TEVTDVLSCTSY-TVDSNGTLTVPMSNGEPRV 78 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT---EEEETTTTEEE-E--TTS-EEEEESTT--EE
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCC--CEEEEEecCCEE-EECCCCEEEEEEcCCceEE
Confidence 4445555666665544556667777777 56778888887788753 689999999987 33 5778999888776665
Q ss_pred E
Q 039407 391 Y 391 (397)
Q Consensus 391 l 391 (397)
|
T Consensus 79 l 79 (91)
T PF09260_consen 79 L 79 (91)
T ss_dssp E
T ss_pred E
Confidence 5
No 49
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=88.18 E-value=3.9 Score=44.07 Aligned_cols=88 Identities=10% Similarity=0.116 Sum_probs=56.1
Q ss_pred cHHHHHHHHHhCCCeEEEEeeC----------Cc-------------------cccCC----CCCCccchHHHHHHHH-H
Q 039407 107 GIKALADYVHGKGLKLGIYSSA----------GY-------------------YTCSK----QMPGSLGYEDQDAKTF-A 152 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~p----------g~-------------------~~c~~----~~pg~~~~~~~~~~~~-~ 152 (397)
.+|.|++.+|++||++-|=+.. +. ..|.. .+|.++.++...++.+ .
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999997542211 00 00110 1466777777667665 5
Q ss_pred hcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEecCCC
Q 039407 153 SWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWG 197 (397)
Q Consensus 153 ~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c~~g 197 (397)
+.|||.+.+|....- ..+..+.+++++++..+++++-.-.|.
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~ligE~w~ 351 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILLYGEGWD 351 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEEEEccCC
Confidence 799999999987432 233456678888777766655423343
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=87.80 E-value=2.5 Score=41.62 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC------CCC----CCCeeecCCCCCCcHHHHHHHHHhCCCeEEEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD------RDE----KGNLQARNTTFPSGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~------rd~----~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 125 (397)
+++++.+.++.| +.+|++.|.++=-+.... -.. .|....+| -| +=|+.++++.|++||++=-|
T Consensus 17 ~~~~~~~~l~~l-----~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~p-g~-DpL~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 17 SKEQIDEMLDDL-----KSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDP-GF-DPLEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCC-Cc-cHHHHHHHHHHHcCCEEEEE
Confidence 788888888877 455566666653332110 000 11111111 11 12899999999999999888
Q ss_pred eeCCccc----------------------c------C------CCCCCccchHHHHHHH-HHhcCCcEEEeeCCC
Q 039407 126 SSAGYYT----------------------C------S------KQMPGSLGYEDQDAKT-FASWGVDYLKYDNCY 165 (397)
Q Consensus 126 ~~pg~~~----------------------c------~------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~ 165 (397)
+..+... + . +.+|++++|+...++- ++.+.||.|-+|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~ 164 (311)
T PF02638_consen 90 FRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYF 164 (311)
T ss_pred EEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccc
Confidence 7432100 0 0 1257889999777765 579999999999653
No 51
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=87.68 E-value=3.2 Score=44.64 Aligned_cols=72 Identities=13% Similarity=-0.026 Sum_probs=56.4
Q ss_pred eeEEEEEcCC-CCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCccccee--eeeeEEEEEcCCcEEEEEEEe
Q 039407 319 QEVWAAPLSG-YRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQ--FVGNLSAMVGSHACKMYILKP 395 (397)
Q Consensus 319 ~~vw~~~l~~-g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~--~~g~~~~~L~ph~~~ll~l~p 395 (397)
.-+....+.+ +...|++.|.+..++.+++++..+ .+ ..++|+..++.. +. ..+.+.++|+||+-.-|++.+
T Consensus 610 vLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~--~~---~~~~dl~~~~~~-~~~~~~~~~~i~L~~y~~~wl~~~~ 683 (688)
T TIGR02455 610 LLVMVHELPAGKGIQITALNFGADAIAEEICLPGF--AP---GPVVDIIHESVE-GDLTDDCELMINLDPYEALALRIVN 683 (688)
T ss_pred EEEEEEEcCCCCceEEEeeccCCCCeeeEEecccc--CC---CCceeccCCCcc-CCcCCCceeEEEecCcceEEEEecc
Confidence 4455566554 468999999999999999998754 33 268999999987 44 346799999999999999876
Q ss_pred C
Q 039407 396 I 396 (397)
Q Consensus 396 ~ 396 (397)
.
T Consensus 684 ~ 684 (688)
T TIGR02455 684 A 684 (688)
T ss_pred c
Confidence 4
No 52
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.92 E-value=2.1 Score=45.98 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEe--------CCccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEe
Q 039407 57 EDIIKAAADALVSSGLAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYS 126 (397)
Q Consensus 57 e~~i~~~ad~l~~~gl~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~ 126 (397)
.+...+.++. |+++||+.|.+ |-+|--. ..|..-|. ++| |++||.|+|.+|++|+.+-|=.
T Consensus 164 ~e~a~~llpY-----l~elG~T~IELMPv~e~p~~~sWGYq---~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 164 FELAIELLPY-----LKELGITHIELMPVAEHPGDRSWGYQ---GTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHhHH-----HHHhCCCEEEEcccccCCCCCCCCCC---cceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 3444444555 47889988887 6666432 22333332 455 5689999999999998776544
Q ss_pred eCCc-----cccC--------C-------------------CCCCccchHHHHHHH-HHhcCCcEEEeeCCCC
Q 039407 127 SAGY-----YTCS--------K-------------------QMPGSLGYEDQDAKT-FASWGVDYLKYDNCYN 166 (397)
Q Consensus 127 ~pg~-----~~c~--------~-------------------~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 166 (397)
-|+- ..|. . .+++++.|+-..+.. +.++.||.|.+|....
T Consensus 235 V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 235 VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred cCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 3321 1110 0 135566776544444 7899999999999744
No 53
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=86.88 E-value=8.1 Score=31.67 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=44.4
Q ss_pred CCeeEEEEEcC-CCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCc--------ccc---ee--eeeeEEEE
Q 039407 317 GDQEVWAAPLS-GYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHK--------TLT---KQ--FVGNLSAM 382 (397)
Q Consensus 317 ~~~~vw~~~l~-~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~--------~~~---g~--~~g~~~~~ 382 (397)
+..-+.+|... +++++|+..|-.+. ++++|+|+-|+- +..|+++=+=.+. .+. .. .++.++++
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~-r~i~l~L~FL~~--g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~ 90 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDA-RTITLPLSFLDK--GKKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTIT 90 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-T--T--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEE
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCc-eEEEEECcccCC--CCcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEE
Confidence 44556666654 46799999997654 559999987642 2245554332232 111 11 23578999
Q ss_pred EcCCcEEEEEEEe
Q 039407 383 VGSHACKMYILKP 395 (397)
Q Consensus 383 L~ph~~~ll~l~p 395 (397)
|.|+|-.+++|+|
T Consensus 91 l~~~GG~vi~~~p 103 (103)
T PF14509_consen 91 LAPGGGFVIRITP 103 (103)
T ss_dssp E-TT-EEEEEEEE
T ss_pred EeCCCcEEEEEEC
Confidence 9999999999987
No 54
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=86.79 E-value=5.5 Score=42.27 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCCccchHHHHHHHHHhcCCcEEEeeCCCCC----C-----CC-ccchHHHHHHHHHhcCCCeE
Q 039407 137 MPGSLGYEDQDAKTFASWGVDYLKYDNCYND----G-----SK-PMDRYPVMTRALMNTGRPIY 190 (397)
Q Consensus 137 ~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~----~-----~~-~~~~y~~m~~al~~~g~~i~ 190 (397)
+|.++.++...++.+.+.|||.+.+|.+..- + .. ..+..+.+++++++..++++
T Consensus 172 np~vr~~l~~~~~~w~~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~ 235 (539)
T TIGR02456 172 NPAVHDAVHDVMRFWLDLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRM 235 (539)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeE
Confidence 3667777777788878899999999986431 0 01 12345567777766554443
No 55
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=86.51 E-value=5.5 Score=39.80 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCC-------C-------ccchHH-----HHHHHHHhcCCcEEEeeCCCCCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMP-------G-------SLGYED-----QDAKTFASWGVDYLKYDNCYNDG 168 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~p-------g-------~~~~~~-----~~~~~~~~wGvdylK~D~~~~~~ 168 (397)
+++|++.+|+.|||+|+|+.+.-.....+.+ + ...+++ +.-+.+..+.++.|=.|.....
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~- 218 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD- 218 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-
T ss_pred HHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-
Confidence 7999999999999999999986211111100 0 112232 3334456677777877876543
Q ss_pred CCccchHHHHHHHHHhcCCCeEEEe
Q 039407 169 SKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 169 ~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
......+..+.+.+++..+.++++.
T Consensus 219 ~~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 219 PDEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp CCTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred cccccCHHHHHHHHHHhCCeEEEec
Confidence 1112234556677777777777763
No 56
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=85.74 E-value=9.7 Score=38.69 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=66.6
Q ss_pred CcccCceEEEe----CCccccCCCCCCCCeeecCCCCC---CcHHHHHHHHHhCCCeEEEEeeCCccc---cC-------
Q 039407 72 LAKLGYIYVNI----DDCWGEQDRDEKGNLQARNTTFP---SGIKALADYVHGKGLKLGIYSSAGYYT---CS------- 134 (397)
Q Consensus 72 l~~~Gy~~i~i----DdgW~~~~rd~~G~~~~~~~~FP---~Gl~~l~~~i~~~Glk~Giw~~pg~~~---c~------- 134 (397)
++++|.+||++ =||+.-..- .+.++.. .+-| +=+++|++.+|+.|||||+|+++-.-. +.
T Consensus 90 ~k~AGakY~vlTaKHHDGF~lw~S-~~t~~n~--~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~ 166 (384)
T smart00812 90 FKKAGAKYVVLTAKHHDGFCLWDS-KYSNWNA--VDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDE 166 (384)
T ss_pred HHHcCCCeEEeeeeecCCccccCC-CCCCCcc--cCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCcccccccccc
Confidence 46788899998 334332110 1122221 1111 128999999999999999999872110 00
Q ss_pred --CCCCCccchH----HHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCe---EEEecCCC
Q 039407 135 --KQMPGSLGYE----DQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPI---YYSLCEWG 197 (397)
Q Consensus 135 --~~~pg~~~~~----~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i---~~~~c~~g 197 (397)
...|...+|+ .+.-+.+..+|-+.|=.|+....... .-....+.+-+++..+.+ +++ ..|+
T Consensus 167 ~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~-~~~~~~l~~~~~~~qP~~~~vvvn-~R~~ 236 (384)
T smart00812 167 DPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDD-YWRSKEFLAWLYNLSPVKDTVVVN-DRWG 236 (384)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccc-hhcHHHHHHHHHHhCCCCceEEEE-cccc
Confidence 0123334454 34445567889999999986432111 112344555566555554 665 3443
No 57
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.58 E-value=13 Score=39.55 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEe--------CCccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw 125 (397)
+-+.|.+.++.| +++|++.|.| +.+|.-. ......+++ +| ++.+|.|++.+|++||++-|=
T Consensus 109 ~~~gi~~~l~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~---~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 109 TFDAAIEKLPYL-----ADLGITAIELMPVAQFPGTRGWGYD---GVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccCCCCCCCCCC---ccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 445555566654 7788888866 1223211 111122332 22 235999999999999997543
Q ss_pred eeCCc--------------------cccCC----CCC---CccchHHHHHHH-HHhcCCcEEEeeCCCCC-CCCccchHH
Q 039407 126 SSAGY--------------------YTCSK----QMP---GSLGYEDQDAKT-FASWGVDYLKYDNCYND-GSKPMDRYP 176 (397)
Q Consensus 126 ~~pg~--------------------~~c~~----~~p---g~~~~~~~~~~~-~~~wGvdylK~D~~~~~-~~~~~~~y~ 176 (397)
+.+.. ..|+. .+| .++.++-..++. +.++|||.+.+|....- ........+
T Consensus 180 ~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~ 259 (542)
T TIGR02402 180 VVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILE 259 (542)
T ss_pred EccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHH
Confidence 22210 01111 245 677777666665 46899999999976431 111223456
Q ss_pred HHHHHHHhcCCC
Q 039407 177 VMTRALMNTGRP 188 (397)
Q Consensus 177 ~m~~al~~~g~~ 188 (397)
.+++++++..++
T Consensus 260 ~~~~~~~~~~p~ 271 (542)
T TIGR02402 260 ELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHCCC
Confidence 677888766654
No 58
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.36 E-value=11 Score=41.57 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=54.9
Q ss_pred CcccCceEEEe--------CCccccCCCCCCCCeeecCCCCC--CcHHHHHHHHHhCCCeEEEEeeCCc-----------
Q 039407 72 LAKLGYIYVNI--------DDCWGEQDRDEKGNLQARNTTFP--SGIKALADYVHGKGLKLGIYSSAGY----------- 130 (397)
Q Consensus 72 l~~~Gy~~i~i--------DdgW~~~~rd~~G~~~~~~~~FP--~Gl~~l~~~i~~~Glk~Giw~~pg~----------- 130 (397)
|+++|++.|.| +..|.- +..|...+++ +|. +.+|.|++.+|++|+++-|=+.+..
T Consensus 279 lk~LGvt~I~LmPi~e~~~~~~wGY---~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~f 354 (730)
T PRK12568 279 VQQLGFTHIELLPITEHPFGGSWGY---QPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQF 354 (730)
T ss_pred HHHcCCCEEEECccccCCCCCCCCC---CCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccccccC
Confidence 47888888866 222321 1123344443 553 3699999999999999765433210
Q ss_pred -cc---------cC-----------CCCCCccchHHHHHHH-HHhcCCcEEEeeCC
Q 039407 131 -YT---------CS-----------KQMPGSLGYEDQDAKT-FASWGVDYLKYDNC 164 (397)
Q Consensus 131 -~~---------c~-----------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~ 164 (397)
.+ +. -.+|.++.|+-..+.. +.+.|||.+.+|..
T Consensus 355 dg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 355 DGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred CCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 00 00 1145666777666655 57899999999975
No 59
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=83.25 E-value=17 Score=34.04 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeec-CCCCCCc-HHHHHHHHHhCCCeEEEEeeCCc--
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQAR-NTTFPSG-IKALADYVHGKGLKLGIYSSAGY-- 130 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~-~~~FP~G-l~~l~~~i~~~Glk~Giw~~pg~-- 130 (397)
++++.++.......+ .|.+.||+.|.+=+ +. .. ..+..+ +--||+- +.+++..+... .+.|+-+--..
T Consensus 67 ls~~~v~~~lq~~i~-~le~~G~d~illlC---TG--~F-~~l~~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ~ 138 (221)
T PF07302_consen 67 LSKKKVEPRLQACIA-QLEAQGYDVILLLC---TG--EF-PGLTARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQI 138 (221)
T ss_pred EEHHHHHHHHHHHHH-HHHHCCCCEEEEec---cC--CC-CCCCCCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHHH
Confidence 677777776665444 26778999888842 11 10 011111 1223332 57788777766 68888763311
Q ss_pred ----------------cccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHH-hcCCCeEEEe
Q 039407 131 ----------------YTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALM-NTGRPIYYSL 193 (397)
Q Consensus 131 ----------------~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~-~~g~~i~~~~ 193 (397)
..+.+| -|..+-+..-++.++++|.|+|=+|.++.. ..|++.++ .+|.|++++.
T Consensus 139 ~~~~~kW~~l~~~~~~a~asPy-~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 139 AQQAEKWQPLGNPVVVAAASPY-EGDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHhcCCCeEEEEeCCC-CCCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeHH
Confidence 112222 234556677788899999999999999652 56888776 5899998863
No 60
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=82.12 E-value=9.4 Score=29.62 Aligned_cols=53 Identities=11% Similarity=0.032 Sum_probs=30.6
Q ss_pred EEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEE
Q 039407 324 APLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMY 391 (397)
Q Consensus 324 ~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll 391 (397)
....++...++++|.++++.++. .. ...+-+|+.... ...+ .++|+||+++++
T Consensus 37 ~r~~~~~~l~v~~Nls~~~~~~~---------~~--~~~~~l~~s~~~--~~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 37 RRTGGGERLLVAFNLSDEPVTVP---------EG--PWGEVLFSSEPA--RAGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEETTEEEEEEEE-SSS-EEEE---------TS--CCEEEEEECSCS--SE----EEEE-TTEEEEE
T ss_pred EEEcCCceEEEEEecCCCcEEcc---------CC--CCCeEEEcCCCc--cccc--CceECCCEEEEC
Confidence 33346668999999999877776 11 122334544432 2222 789999999875
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=80.19 E-value=7.7 Score=39.31 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=69.6
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCC---cc---------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDD---CW---------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDd---gW---------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~ 118 (397)
...|+++|.+..+.+++ ...+++|++-|.|=. || .+...|.+|-=.-|..|| +..+++.|++.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf---~~eii~~vr~~ 214 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRF---AIEIVEEIKAR 214 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHh
Confidence 45899999998887754 345678999999976 77 333346676545566677 67888888874
Q ss_pred ---CCeEEEEeeCCccccCC---------CCCCccchH--HHHHHHHHhcCCcEEEeeC
Q 039407 119 ---GLKLGIYSSAGYYTCSK---------QMPGSLGYE--DQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 119 ---Glk~Giw~~pg~~~c~~---------~~pg~~~~~--~~~~~~~~~wGvdylK~D~ 163 (397)
++.+|+=+.+....+.. ..++..... ...++.+.+.|+|||-+-.
T Consensus 215 ~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 215 CGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 56777777653211110 112222222 3566778888999987753
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=80.01 E-value=19 Score=39.80 Aligned_cols=89 Identities=17% Similarity=0.293 Sum_probs=53.6
Q ss_pred CcccCceEEEeC--------CccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEeeCCc-----------
Q 039407 72 LAKLGYIYVNID--------DCWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSSAGY----------- 130 (397)
Q Consensus 72 l~~~Gy~~i~iD--------dgW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~pg~----------- 130 (397)
|+++|++.|.|= ..|-- +..+...+++ +| |+.+|.|++.+|++||++-|=+.+..
T Consensus 275 lk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~ 350 (726)
T PRK05402 275 VKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARF 350 (726)
T ss_pred HHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhcc
Confidence 478899888762 22321 1112233332 23 23599999999999999765332210
Q ss_pred ---c----------------cc--CCCCCCccchHHHHHHHH-HhcCCcEEEeeCC
Q 039407 131 ---Y----------------TC--SKQMPGSLGYEDQDAKTF-ASWGVDYLKYDNC 164 (397)
Q Consensus 131 ---~----------------~c--~~~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 164 (397)
. +| .-.+|.++.++...++.+ .+.|||.+.+|..
T Consensus 351 ~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 351 DGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 0 00 012456677776666664 6899999999974
No 63
>PLN02960 alpha-amylase
Probab=79.79 E-value=16 Score=40.97 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=54.0
Q ss_pred CcccCceEEEeCC--------ccccCCCCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEeeCC------------
Q 039407 72 LAKLGYIYVNIDD--------CWGEQDRDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSSAG------------ 129 (397)
Q Consensus 72 l~~~Gy~~i~iDd--------gW~~~~rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~pg------------ 129 (397)
|+++||+.|.|=- .|-- +..+...+++ +| |+.++.|++.+|++||++-|=+.+.
T Consensus 426 Lk~LGvt~IeLmPv~e~~~~~swGY---~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~ 501 (897)
T PLN02960 426 VKKAGYNAIQLIGVQEHKDYSSVGY---KVTNFFAVSS-RFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSL 501 (897)
T ss_pred HHHcCCCEEEECCcccCCCCCCCCC---CcccCCCccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhh
Confidence 4788888887621 1321 1112222332 22 4579999999999999975433221
Q ss_pred ---ccccC------------------CCCCCccchHHHHHHH-HHhcCCcEEEeeCCC
Q 039407 130 ---YYTCS------------------KQMPGSLGYEDQDAKT-FASWGVDYLKYDNCY 165 (397)
Q Consensus 130 ---~~~c~------------------~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~ 165 (397)
...|- -.+|.++.|+-..++. +.+.+||.+.+|...
T Consensus 502 FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 502 FDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred cCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 00000 0135667777666666 479999999999864
No 64
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=11 Score=40.95 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred ccccCCCCCCCceEEechhhhccC---CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCc
Q 039407 31 NLLANGLAETPAMGWNSWNHFWGN---INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSG 107 (397)
Q Consensus 31 ~~~~~g~~~~pp~GwnSW~~~~~~---i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~G 107 (397)
.+.=-|..+.||+ -|=.+..|. .+|+.|+..-..|-+. +..|+.|-+|=-..+ ..-+++.|+.+||+
T Consensus 344 yaaLTG~~~LPpl--FsiGYHQcRWNY~DE~DV~~Vd~~FDeh---diP~DviWLDIEhtd----gKrYFTWDk~~FP~- 413 (915)
T KOG1066|consen 344 YAALTGTTPLPPL--FSIGYHQCRWNYNDEEDVLTVDQGFDEH---DIPYDVIWLDIEHTD----GKRYFTWDKHKFPN- 413 (915)
T ss_pred HHhhcCCCCCCch--hhcchhhccccccchhhhhhhhcCcccc---CCccceEEEeeeecC----CceeEeeccccCCC-
Confidence 3333566667774 122233332 5688888777766553 334888888855443 33467889999999
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCc
Q 039407 108 IKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
-+.|.+++.+||=|.=.=++|-+
T Consensus 414 P~~Ml~kLa~kgRklV~IvDPHI 436 (915)
T KOG1066|consen 414 PKDMLKKLASKGRKLVTIVDPHI 436 (915)
T ss_pred HHHHHHHHHhcCCceEEEeCccc
Confidence 99999999999999888787743
No 65
>PRK06233 hypothetical protein; Provisional
Probab=78.97 E-value=10 Score=38.35 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred hccCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCc---HHHHHH--------HHHh
Q 039407 51 FWGNINEDIIKAAADALVS--SGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSG---IKALAD--------YVHG 117 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~G---l~~l~~--------~i~~ 117 (397)
+|.+ .++.+.+.|+++.+ ..|.++|.+||||||.-....++... .+ ..+|.. ...+++ -+..
T Consensus 158 ~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~ 232 (372)
T PRK06233 158 FYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLN---DT-ENDPKEHQKYVKLAEDAVYVINKALAD 232 (372)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhcccc---cc-ccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 4433 36777777777654 24788999999999976432121100 00 112211 111211 1333
Q ss_pred C--CCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 118 K--GLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 118 ~--Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
+ ++++++|++.|..... ....+-++..+..+.+..+|.+=+++-.
T Consensus 233 ~p~d~~i~~H~C~Gn~~~~---~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 279 (372)
T PRK06233 233 LPEDLTVTTHICRGNFKST---YLFSGGYEPVAKYLGQLNYDGFFLEYDN 279 (372)
T ss_pred CCcCCEEEEEeeCCCCCCc---ccccCcHHHHHHHHHhCCCCEEEEecCC
Confidence 3 6788999988743322 2222444556777888899999999854
No 66
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.28 E-value=25 Score=34.45 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCc--cc---------cCCCCCCCCeeecCCCCCCcHHHHHHHHHhC--
Q 039407 54 NINEDIIKAAADALVS--SGLAKLGYIYVNIDDC--WG---------EQDRDEKGNLQARNTTFPSGIKALADYVHGK-- 118 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg--W~---------~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~-- 118 (397)
..|+++|.+..+.+++ ..++++|++-|.|-.+ |- +...|.+|--..+..|| +..+++.+++.
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~g 206 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAVG 206 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHcC
Confidence 5899999998887755 3467789999988764 31 22234555433344455 67888888874
Q ss_pred -CCeEEEEeeCCccccCCCCCC--ccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 119 -GLKLGIYSSAGYYTCSKQMPG--SLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 119 -Glk~Giw~~pg~~~c~~~~pg--~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
++.+|+=+.+.... ++ +.+-....++.+.+.|+|||.+-...
T Consensus 207 ~d~~i~vris~~~~~-----~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 207 PDFPVGVRLSADDFV-----PGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCceEEEEechhccC-----CCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 56667666653211 11 12333566788999999999986644
No 67
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=78.26 E-value=11 Score=35.40 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGR 187 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~ 187 (397)
++.+++.+|+.|+++-|+..+-..... .....+.+...++...+.|.||||.-.-.. .....+.-+.|+++.+++..
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~~--~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEVA--DEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHBS--STTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhhc--ccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 789999999999999888333111111 011223456666777899999999999844 33334556678888888877
Q ss_pred C----eEEE
Q 039407 188 P----IYYS 192 (397)
Q Consensus 188 ~----i~~~ 192 (397)
| +.++
T Consensus 191 p~~~~Vk~s 199 (236)
T PF01791_consen 191 PGKVGVKAS 199 (236)
T ss_dssp TTTSEEEEE
T ss_pred CcceEEEEe
Confidence 7 7776
No 68
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=76.63 E-value=8.2 Score=34.40 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=43.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCC-----C----CcHHHHHHHHHhCCCeE
Q 039407 52 WGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTF-----P----SGIKALADYVHGKGLKL 122 (397)
Q Consensus 52 ~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~F-----P----~Gl~~l~~~i~~~Glk~ 122 (397)
..+.++++..+..+.| ++.|+++++|= |.... +...-|.++ + +=+..+-+...+.|||+
T Consensus 14 ~~~~~~~~W~~~~~~m-----~~~GidtlIlq--~~~~~-----~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv 81 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM-----KAIGIDTLILQ--WTGYG-----GFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV 81 (166)
T ss_pred hcCCCHHHHHHHHHHH-----HHcCCcEEEEE--EeecC-----CcccCCccccCccccCCcccHHHHHHHHHHHcCCEE
Confidence 4689999999999988 66777777662 43321 111112222 2 12677888889999984
Q ss_pred --EEEeeCC
Q 039407 123 --GIYSSAG 129 (397)
Q Consensus 123 --Giw~~pg 129 (397)
|||.++.
T Consensus 82 ~~Gl~~~~~ 90 (166)
T PF14488_consen 82 FVGLYFDPD 90 (166)
T ss_pred EEeCCCCch
Confidence 8888764
No 69
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.22 E-value=34 Score=36.39 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCC----CCCCeeecCCCCC--CcHHHHHHHHHhCCCeEEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRD----EKGNLQARNTTFP--SGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd----~~G~~~~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 124 (397)
+-..|.+.++.+ +++|++.|.|=--++....+ ......+|| +|- ..++.|++.+|++|||+-+
T Consensus 25 ~~~gi~~~l~yl-----~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYL-----KKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHH-----HHcCCCEEEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 455666667765 77888888775544432111 111223443 332 2489999999999999754
No 70
>smart00632 Aamy_C Aamy_C domain.
Probab=75.84 E-value=32 Score=26.49 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCC----Ccccceee-eeeEEEEEcCCcE-EEE
Q 039407 319 QEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWE----HKTLTKQF-VGNLSAMVGSHAC-KMY 391 (397)
Q Consensus 319 ~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWs----g~~~~g~~-~g~~~~~L~ph~~-~ll 391 (397)
.-+|.| |+..++++|.+....+.++. -+|+. +.| .|+-+ ++.+ .+. .|.++++|||+++ +|+
T Consensus 10 ~laF~R----g~~g~VaiN~~~~~~~~~~~---t~lp~-G~Y--~d~l~g~~~g~~v-~V~~~G~~~~~l~~~~~v~i~ 77 (81)
T smart00632 10 QIAFER----GSKGFVAINRSDSDLTITLQ---TSLPA-GTY--CDVISGLCTGKSV-TVGSNGIATFTLPAGGAVAIH 77 (81)
T ss_pred EEEEEC----CCeEEEEEECCCCceEEEEe---ecCCC-cce--EEEecCcccCCEE-EECCCCEEEEEECCCCeEEEE
Confidence 455555 45678888988776665553 23543 333 46665 5555 343 5788999999994 443
No 71
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=75.65 E-value=11 Score=36.76 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=60.2
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCC-----CCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNT-----TFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~-----~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
+.++|.+.|+|+|-|.... ..+++ -.|. ++.+++.+|+.|.+.+++.+.. ...
T Consensus 177 ~~~~G~d~i~i~d~~~~~~-------~isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~cG~--------------~~~ 234 (330)
T cd03465 177 LIEAGADGIYISDPWASSS-------ILSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNCGD--------------TAP 234 (330)
T ss_pred HHHhCCCEEEEeCCccccC-------CCCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEECCC--------------chh
Confidence 3456889999999886421 11111 1344 8999999999998888776631 125
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 147 DAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
.++.+.+.|+|.+-+|.+. .+.++.+..|+.+.+.
T Consensus 235 ~~~~l~~~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 269 (330)
T cd03465 235 ILELMADLGADVFSIDVTV-----------DLAEAKKKVGDKACLM 269 (330)
T ss_pred HHHHHHHhCCCeEeecccC-----------CHHHHHHHhCCceEEE
Confidence 6788999999999988874 2555666677655443
No 72
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.76 E-value=18 Score=38.53 Aligned_cols=63 Identities=6% Similarity=-0.014 Sum_probs=38.2
Q ss_pred eeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEE
Q 039407 319 QEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYI 392 (397)
Q Consensus 319 ~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~ 392 (397)
.-++.+...+ ..+++++|.+++++++.++ . +. . ..+++.++... .......++|+|++..+++
T Consensus 487 v~af~R~~~~-~~~lvv~N~s~~~~~~~~~--~--~~--~--~~~~~l~~~~~--~~~~~~~~~L~p~~~~~~~ 549 (551)
T PRK10933 487 LWCYRREWQG-QTLLVIANLSREPQPWQPG--Q--MR--G--NWQLLMHNYEE--ASPQPCAMTLRPFEAVWWL 549 (551)
T ss_pred EEEEEEEcCC-cEEEEEEECCCCCeeeecC--c--cc--C--CceEEeecCcc--ccCCCCcEEECCCeEEEEE
Confidence 4455676644 5789999999887776654 1 11 1 12345555321 1111135789999999986
No 73
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=73.96 E-value=44 Score=38.75 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=55.1
Q ss_pred cHHHHHHHHHhCCCeEEEEeeC--------------Cc------------cccC----CCCCCccchHHHHHHHH-HhcC
Q 039407 107 GIKALADYVHGKGLKLGIYSSA--------------GY------------YTCS----KQMPGSLGYEDQDAKTF-ASWG 155 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~p--------------g~------------~~c~----~~~pg~~~~~~~~~~~~-~~wG 155 (397)
.||.|++.+|++||++-|=+-. +. ..|. ..+|.++.++-..++.+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999997542211 10 0111 12456667776666665 5899
Q ss_pred CcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEecCCC
Q 039407 156 VDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWG 197 (397)
Q Consensus 156 vdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c~~g 197 (397)
||.+.+|.+.. -..+....++.++++..+.+++-.-.|.
T Consensus 636 VDGFRfDl~g~---~d~~~~~~~~~~l~~~dP~~~liGE~W~ 674 (1111)
T TIGR02102 636 VDGFRFDMMGD---HDAASIEIAYKEAKAINPNIIMIGEGWR 674 (1111)
T ss_pred CcEEEEecccc---CCHHHHHHHHHHHHHhCcCEEEEEeccc
Confidence 99999998753 1123445566677766666655433343
No 74
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=73.71 E-value=5.3 Score=39.38 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=35.0
Q ss_pred CcccCceEEEeC----Cc---cccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 72 LAKLGYIYVNID----DC---WGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 72 l~~~Gy~~i~iD----dg---W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
+++.|.+||++- || |-...-.........|+| +=.++|++.+++++++||||++++.
T Consensus 111 fq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~dvgpkr--DiV~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 111 FQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMDVGPKR--DIVGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHhcCceEEEEeecccCceecCCCcCcccccccccCccc--cHHHHHHHHHHhcCcceeEeecHHH
Confidence 477888999984 23 221100001111122222 1279999999999999999999864
No 75
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=72.18 E-value=29 Score=33.38 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGR 187 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~ 187 (397)
+..+++..|+.||-.-+|.-|-...-.............-++.=++.|.|.||.++.... ..++++.+.++-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 677888999999999888877321110000011112233334457999999999998652 567888888999
Q ss_pred CeEEEe
Q 039407 188 PIYYSL 193 (397)
Q Consensus 188 ~i~~~~ 193 (397)
|++++.
T Consensus 204 pVviaG 209 (265)
T COG1830 204 PVVIAG 209 (265)
T ss_pred CEEEeC
Confidence 988763
No 76
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=71.10 E-value=16 Score=36.19 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCC--cc---------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDD--CW---------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDd--gW---------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
..+|+++|.+..+.+++ ..++++|++-|.|-. |+ .+...|.+|--.-|..+| +..+++.|++.
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~v 218 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVW 218 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 46899999988887754 345678999998875 34 233345666545555566 67888888875
Q ss_pred --CCeEEEEeeCCccccCCCCCCcc--chHHHHHHHHHhcCCcEEEee
Q 039407 119 --GLKLGIYSSAGYYTCSKQMPGSL--GYEDQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 119 --Glk~Giw~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wGvdylK~D 162 (397)
++.+++=+.+.. .+ ++.. .-....++.+.+.|+|||.+-
T Consensus 219 G~d~~v~vri~~~~-~~----~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 219 PEDKPLFVRISATD-WV----EGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCceEEEEEcccc-cC----CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 455665555421 11 2211 222456677889999999863
No 77
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=71.00 E-value=28 Score=40.77 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhCCCeEEEEeeC-----Cc------------------------------cccCC----CCCCccchHHHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSA-----GY------------------------------YTCSK----QMPGSLGYEDQD 147 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~p-----g~------------------------------~~c~~----~~pg~~~~~~~~ 147 (397)
.+|.|++.+|++||++-|=+.. +. ..|.. .+|.++.++...
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 3999999999999997543211 00 00111 146666777777
Q ss_pred HHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEE
Q 039407 148 AKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYY 191 (397)
Q Consensus 148 ~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~ 191 (397)
++.+.+.|||.+.+|-...-+.......+.++..+++...+.++
T Consensus 328 lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 328 LRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred HHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCc
Confidence 77766699999999987553222233335566677766554433
No 78
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=70.90 E-value=11 Score=37.76 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCC-ccccCCCCCCcc-chHHHHHHHHHhcCCcEEEeeCCCCCCC--CccchHHH----HHH
Q 039407 109 KALADYVHGKGLKLGIYSSAG-YYTCSKQMPGSL-GYEDQDAKTFASWGVDYLKYDNCYNDGS--KPMDRYPV----MTR 180 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg-~~~c~~~~pg~~-~~~~~~~~~~~~wGvdylK~D~~~~~~~--~~~~~y~~----m~~ 180 (397)
+.++.+.|++|+|+-+ ..+ ...-. ..|..+ .+++..++.++++|+|+|-+|+-+.... ...+.|.. +++
T Consensus 67 ~~~~~~A~~~~v~v~~--~~~~~~~~l-~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 67 DELLCYAHSKGVRLVL--KGDVPLEQI-SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HHHHHHHHHcCCEEEE--ECccCHHHc-CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH
Confidence 5888899999999642 211 11000 124333 4778888999999999999999876432 22344544 555
Q ss_pred HHHhcCCCeEEEec
Q 039407 181 ALMNTGRPIYYSLC 194 (397)
Q Consensus 181 al~~~g~~i~~~~c 194 (397)
+|++.++...++++
T Consensus 144 ~l~~~~~~~~Lsva 157 (358)
T cd02875 144 AFKKENPGYQISFD 157 (358)
T ss_pred HHhhcCCCcEEEEE
Confidence 56555555555543
No 79
>PRK06852 aldolase; Validated
Probab=70.05 E-value=29 Score=34.09 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcC-
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTG- 186 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g- 186 (397)
+..+++++|+.||-.-+|.-|--..-. .+.....+...++.=++.|.|.||+.++..... ..-..++++.+.+|
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~---g~~e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA---NPAELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC---CCHHHHHHHHHhCCC
Confidence 788889999999999888877321111 111224556666667899999999999853111 11245666777784
Q ss_pred CCeEEE
Q 039407 187 RPIYYS 192 (397)
Q Consensus 187 ~~i~~~ 192 (397)
.|++++
T Consensus 231 vpVvia 236 (304)
T PRK06852 231 TKVVCA 236 (304)
T ss_pred CcEEEe
Confidence 466665
No 80
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=70.01 E-value=41 Score=35.93 Aligned_cols=236 Identities=19% Similarity=0.196 Sum_probs=115.1
Q ss_pred ccccccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCC--CCCeeecCC
Q 039407 25 NQPLRRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDE--KGNLQARNT 102 (397)
Q Consensus 25 ~~~~~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~--~G~~~~~~~ 102 (397)
...-.+..+..-..+-|-.||=| .|....+.+...+.++.|.+ +-++.++.=| |+-..... .+.-+++ .
T Consensus 87 ~~~t~aiDVSsdW~~fPRYGfls--~f~~~~~~~~~~~~i~~L~~-----yHIN~~QFYD-W~~rH~~Pl~~~~~~~~-~ 157 (559)
T PF13199_consen 87 DSATIAIDVSSDWTRFPRYGFLS--DFDKSKSAEDIEAEIDQLNR-----YHINGLQFYD-WMYRHHKPLPGTNGQPD-Q 157 (559)
T ss_dssp EEEEEEEEE-SSTTSS--EEEE-----GGGGGHHHHHHHHHHHHH-----TT--EEEETS---SBTTB-S-SSS-EEE--
T ss_pred eeeeEEEEecCCcccCCcceEec--CCCCcCCchhHHHHHHHHHh-----hCcCeEEEEe-eccccCCcCCCCCCchh-h
Confidence 34456677777778889999988 45555688899999998854 4445555532 65432111 0011111 2
Q ss_pred CCCC---------cHHHHHHHHHhCCCeEEEEeeCCc------------------cccC--------------------C
Q 039407 103 TFPS---------GIKALADYVHGKGLKLGIYSSAGY------------------YTCS--------------------K 135 (397)
Q Consensus 103 ~FP~---------Gl~~l~~~i~~~Glk~Giw~~pg~------------------~~c~--------------------~ 135 (397)
.|++ =+|..++.+|+.|+|.-.|..... ..+. +
T Consensus 158 ~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP 237 (559)
T PF13199_consen 158 TWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDP 237 (559)
T ss_dssp TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-T
T ss_pred hhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecC
Confidence 5554 279999999999999999975421 0110 1
Q ss_pred CCCCccchH-HHHHHHHHhcCCcEEEeeCCCCC-------CC---CccchHHHHHHHHHhcC--CCeEEEe-cCCCCCCc
Q 039407 136 QMPGSLGYE-DQDAKTFASWGVDYLKYDNCYND-------GS---KPMDRYPVMTRALMNTG--RPIYYSL-CEWGDMHP 201 (397)
Q Consensus 136 ~~pg~~~~~-~~~~~~~~~wGvdylK~D~~~~~-------~~---~~~~~y~~m~~al~~~g--~~i~~~~-c~~g~~~~ 201 (397)
.+|+-+.|+ ++..+.++..|||.+-+|=.+.. +. .....|..+.+++++.. .+++++- ..||....
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~ 317 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQI 317 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhh
Confidence 123345666 34456688999999999998642 11 12456777777776543 5677763 23442110
Q ss_pred c---cccccccCeEeecCCCCCchHHHHHHHHhhccch-hhcCC---CCCCCCCCcccCCCCCCHHHHHHHHHHHHHhcC
Q 039407 202 A---LWGDKVGNSWRTTGDIEDTWDSMISRADENEAFA-KYARP---GGWNDPDMLEVGNGGMTKDEYIVHFSIWAISKA 274 (397)
Q Consensus 202 ~---~~~~~~~~~~Ris~D~~~~w~~~~~~~~~~~~~~-~~~~~---~~~nDpD~l~vg~~~lt~~e~rt~~~lwa~~gs 274 (397)
. .--.-|..+| |-.+....+.+.+.++..+. ....+ ..|-.. --|+.-.-+-.++.|.-|+
T Consensus 318 a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~--------fn~~~vlLtdA~i~A~Gg~ 385 (559)
T PF13199_consen 318 AKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY--------FNTPSVLLTDAVIFASGGS 385 (559)
T ss_dssp TT-S--SSEEEE------SBS-BHHHHHHHHHHHHHHH---S--EEEE---------------HHHHHHHHHHHHHTT-E
T ss_pred hcccccceeeeecc----cccccHHHHHHHHHHHhhhhccccchhhhHHHhhh--------ccchhhHHHHHHHHHCCCc
Confidence 0 0001356778 33455666766666544442 11110 011000 1123333455667777788
Q ss_pred CeeeccC
Q 039407 275 PLLLGCD 281 (397)
Q Consensus 275 pL~is~d 281 (397)
.|.+|++
T Consensus 386 HlelGd~ 392 (559)
T PF13199_consen 386 HLELGDG 392 (559)
T ss_dssp EE-ETTS
T ss_pred eeeecCC
Confidence 9999984
No 81
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=68.86 E-value=24 Score=34.62 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=53.5
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCCcccc-CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCC----ccchHHHHHHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSAGYYTC-SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSK----PMDRYPVMTRA 181 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg~~~c-~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~----~~~~y~~m~~a 181 (397)
.++.-++.+|++|+|+-|-+.-....- ..+......+.+...+.++++|+|.|=+|+-...... ..+.|..+.+.
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 478888899999999877664321100 0111123356677778889999999999997653221 22345555555
Q ss_pred HH-hcCCCeEEEe
Q 039407 182 LM-NTGRPIYYSL 193 (397)
Q Consensus 182 l~-~~g~~i~~~~ 193 (397)
|+ +.++.++++.
T Consensus 141 lr~~~~~~~~lT~ 153 (312)
T cd02871 141 LKDHYGPNFILTM 153 (312)
T ss_pred HHHHcCCCeEEEE
Confidence 54 3455666664
No 82
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=68.01 E-value=21 Score=39.55 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CcccCceEEEeCCccccCC-----CCCCCCeeecCCCC--CCcHHHHHHHHHhCCCeEEEEeeCCc-------------c
Q 039407 72 LAKLGYIYVNIDDCWGEQD-----RDEKGNLQARNTTF--PSGIKALADYVHGKGLKLGIYSSAGY-------------Y 131 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~-----rd~~G~~~~~~~~F--P~Gl~~l~~~i~~~Glk~Giw~~pg~-------------~ 131 (397)
|+++||+.|.|=-=++... -+..+...++ .+| |+.||.|++.+|++|+++-|=+.+.. .
T Consensus 260 lk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg 338 (758)
T PLN02447 260 IKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDG 338 (758)
T ss_pred HHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCC
Confidence 4888999998732221110 0112223343 244 45699999999999999764332210 0
Q ss_pred c--------cCC------------CCCCccchHHHHHHHH-HhcCCcEEEeeCC
Q 039407 132 T--------CSK------------QMPGSLGYEDQDAKTF-ASWGVDYLKYDNC 164 (397)
Q Consensus 132 ~--------c~~------------~~pg~~~~~~~~~~~~-~~wGvdylK~D~~ 164 (397)
+ +.+ .+|.++.|+-..++.+ .+.|||.+.+|..
T Consensus 339 ~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 339 TDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred CCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 0 000 1345666776666664 6899999999975
No 83
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=67.68 E-value=19 Score=35.88 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=67.0
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCcc-----------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDCW-----------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW-----------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|++.++.+++ ..++++|++-|.|=.+= .+...|.+|-=.-|..|| +..+++.|++.
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf---~~eii~~ir~~~ 206 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRF---LREIIDAVKEVW 206 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHH---HHHHHHHHHHhc
Confidence 45899999999887754 34677899999997661 122235565434455677 66788888876
Q ss_pred CCeEEEEeeCCccccCCCCCCcc--chHHHHHHHHHhcCCcEEEeeC
Q 039407 119 GLKLGIYSSAGYYTCSKQMPGSL--GYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 119 Glk~Giw~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wGvdylK~D~ 163 (397)
.+.+++=+.+.. +.++.. +-....++.+.+.|+|||-+-.
T Consensus 207 ~~~v~vRis~~d-----~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 207 DGPLFVRISASD-----YHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCeEEEecccc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 556676665521 112222 2224566778889999998854
No 84
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.86 E-value=38 Score=32.64 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
+++.+++.|+.+++ +|..++-.- -|- .|.....|+--. ..|++.|.++.++.|+.+-- ++
T Consensus 39 ~~~~~~~~A~~lk~-----~g~~~~r~~-~~k--pRTs~~s~~G~g---~~gl~~l~~~~~~~Gl~~~t--e~------- 98 (266)
T PRK13398 39 SEEQMVKVAEKLKE-----LGVHMLRGG-AFK--PRTSPYSFQGLG---EEGLKILKEVGDKYNLPVVT--EV------- 98 (266)
T ss_pred CHHHHHHHHHHHHH-----cCCCEEEEe-eec--CCCCCCccCCcH---HHHHHHHHHHHHHcCCCEEE--ee-------
Confidence 78999999998855 555544432 121 233311222101 35899999999999998641 22
Q ss_pred CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEec
Q 039407 136 QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLC 194 (397)
Q Consensus 136 ~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c 194 (397)
+-...++.+.+. +|++|+=..... ...+.+++.++|.|++++..
T Consensus 99 -------~d~~~~~~l~~~-vd~~kIga~~~~-------n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 99 -------MDTRDVEEVADY-ADMLQIGSRNMQ-------NFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred -------CChhhHHHHHHh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeCC
Confidence 222345556666 889998554321 13355566677888888753
No 85
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.15 E-value=45 Score=31.86 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
|++.+++.|+.+ +++|..++-= .-|- .|.+...++--.. .|++.|.++.++.|+.+-- +
T Consensus 27 s~e~~~~~a~~~-----~~~g~~~~r~-g~~k--pRts~~sf~G~G~---~gl~~L~~~~~~~Gl~~~T--e-------- 85 (250)
T PRK13397 27 SYDHIRLAASSA-----KKLGYNYFRG-GAYK--PRTSAASFQGLGL---QGIRYLHEVCQEFGLLSVS--E-------- 85 (250)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEe-cccC--CCCCCcccCCCCH---HHHHHHHHHHHHcCCCEEE--e--------
Confidence 689999999986 5666654421 2232 2333222211111 2799999999999998631 2
Q ss_pred CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 136 QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 136 ~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
-|-...++.+++ .+|.+|+=..... -..+.+++.++|.|++++.
T Consensus 86 ------v~d~~~v~~~~e-~vdilqIgs~~~~-------n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 86 ------IMSERQLEEAYD-YLDVIQVGARNMQ-------NFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred ------eCCHHHHHHHHh-cCCEEEECccccc-------CHHHHHHHHccCCeEEEeC
Confidence 233445666777 6999998654321 1346777778888888874
No 86
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=65.83 E-value=42 Score=30.13 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhC--CCeEEEEeeCCccccC---CCCCC-ccchHHHHHHHHHhcCCcEEEeeCCCCCCCC--ccchHHHH
Q 039407 107 GIKALADYVHGK--GLKLGIYSSAGYYTCS---KQMPG-SLGYEDQDAKTFASWGVDYLKYDNCYNDGSK--PMDRYPVM 178 (397)
Q Consensus 107 Gl~~l~~~i~~~--Glk~Giw~~pg~~~c~---~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m 178 (397)
........+|++ |+|+-+-+.-...... -..|. ...+.+..++.++++|+|.|=+|+-...... ..+.|..+
T Consensus 50 ~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~l 129 (210)
T cd00598 50 PLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITL 129 (210)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHH
Confidence 466677788887 8887766643221111 01122 2346677788889999999999997664332 24566666
Q ss_pred HHHHHhc-CC-CeEEEec
Q 039407 179 TRALMNT-GR-PIYYSLC 194 (397)
Q Consensus 179 ~~al~~~-g~-~i~~~~c 194 (397)
.+.|++. ++ ..+++..
T Consensus 130 l~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 130 LRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHHHhcccCcEEEEE
Confidence 6666543 33 4566654
No 87
>PLN00196 alpha-amylase; Provisional
Probab=65.60 E-value=16 Score=37.78 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=41.5
Q ss_pred EechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCee-----ecCCCCCC--cHHHHHHHHHh
Q 039407 45 WNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQ-----ARNTTFPS--GIKALADYVHG 117 (397)
Q Consensus 45 wnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~-----~~~~~FP~--Gl~~l~~~i~~ 117 (397)
|++|..-+ -.-+.|.+.++.| +++|++.|-|=--... ....|++. .|+.+|=+ -++.|++.+|+
T Consensus 33 W~~~~~~g--g~~~~i~~kldyL-----~~LGvtaIWL~P~~~s--~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~ 103 (428)
T PLN00196 33 WESWKQNG--GWYNFLMGKVDDI-----AAAGITHVWLPPPSHS--VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHG 103 (428)
T ss_pred cCCCCCCC--cCHHHHHHHHHHH-----HHcCCCEEEeCCCCCC--CCCCCCCccccCCCCcccCCCHHHHHHHHHHHHH
Confidence 55654322 1356677888876 6778887755322221 11234433 34445621 39999999999
Q ss_pred CCCeE
Q 039407 118 KGLKL 122 (397)
Q Consensus 118 ~Glk~ 122 (397)
+|+|+
T Consensus 104 ~GIkV 108 (428)
T PLN00196 104 KGVQV 108 (428)
T ss_pred CCCEE
Confidence 99995
No 88
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=65.37 E-value=25 Score=35.10 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=64.3
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCc--c---------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDC--W---------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg--W---------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|.+..+.+++ ..++++|++.|.|=.+ | .+...|.+|--.-|..+| +..+++.|++.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~v 201 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAV 201 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 45899999988887754 3467789999999432 1 122345665444455566 57888888874
Q ss_pred C--CeEEEEeeCCccccCCCCCCcc--chHHHHHHHHHhcCCcEEEee
Q 039407 119 G--LKLGIYSSAGYYTCSKQMPGSL--GYEDQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 119 G--lk~Giw~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wGvdylK~D 162 (397)
| +.+++=+.+.- +.++.. +-....++.+.+.|+|||-+-
T Consensus 202 G~d~~v~iRi~~~D-----~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 202 GEDFIIIYRLSMLD-----LVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCceEEEEecccc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4 44555555421 112222 222456788899999999884
No 89
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=65.23 E-value=35 Score=33.94 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=65.8
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCcc-----------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDCW-----------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW-----------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|.+..+.+++ ..++++|++-|.|-.+= .+...|.+|-=..|..|| +..+++.|++.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~v 216 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAI 216 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHh
Confidence 35899999988887754 34677899999996442 233346666445566788 67888888874
Q ss_pred CC-eEEEEeeCCccccCCCCCC--ccchHHHHHHHHHhcCCcEEEee
Q 039407 119 GL-KLGIYSSAGYYTCSKQMPG--SLGYEDQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 119 Gl-k~Giw~~pg~~~c~~~~pg--~~~~~~~~~~~~~~wGvdylK~D 162 (397)
|- .+|+=+.+.... . ..++ ..+-....++.+.+.|+|||-+-
T Consensus 217 g~d~v~vRis~~~~~-~-~~~~~~~~ee~~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 217 GADRVGIRLSPFGTF-N-DMGDSDPEATFSYLAKELNKRGLAYLHLV 261 (338)
T ss_pred CCCceEEEECccccC-C-CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 54 355555442110 0 0011 11223456777888899999883
No 90
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=64.84 E-value=24 Score=34.84 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=57.8
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecC-CC--CCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARN-TT--FPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDA 148 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~-~~--FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~ 148 (397)
+.++|.+.|+++|.|.... -+.+.. .+ .|. ++.+++.+|+.|..+++++... + ...+
T Consensus 189 ~~~~Gad~I~i~dp~a~~~-----~lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~CG~------~--------~~~~ 248 (340)
T TIGR01463 189 MVEAGADVIAIADPFASSD-----LISPETYKEFGLPY-QKRLFAYIKEIGGITVLHICGF------T--------QPIL 248 (340)
T ss_pred HHHcCCCEEEecCCccCcc-----ccCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEECCC------c--------hhhH
Confidence 4578999999999886421 111110 01 233 7999999999887777766532 1 2346
Q ss_pred HHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 149 KTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 149 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
..+++.|+|-+-+|.... |.++-+..|..+.+.
T Consensus 249 ~~l~~~g~d~ls~d~~~~-----------l~~~~~~~g~~~~i~ 281 (340)
T TIGR01463 249 RDIANNGCFGFSVDMKPG-----------MDHAKRVIGGQASLV 281 (340)
T ss_pred HHHHHhCCCEEeecCCCC-----------HHHHHHHcCCceEEE
Confidence 678889999988887642 455555667655543
No 91
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=63.40 E-value=12 Score=37.71 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
+.++.++.++.| +++||+.|=. .. .-...+++.+-.-++.|.+++|+.||++-+=++|.
T Consensus 12 ~~~~~~~yi~~a-----~~~Gf~~iFT-----SL-----~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~------ 70 (357)
T PF05913_consen 12 SFEENKAYIEKA-----AKYGFKRIFT-----SL-----HIPEDDPEDYLERLKELLKLAKELGMEVIADISPK------ 70 (357)
T ss_dssp -HHHHHHHHHHH-----HCTTEEEEEE-----EE--------------HHHHHHHHHHHHHHCT-EEEEEE-CC------
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEC-----CC-----CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH------
Confidence 577888888887 5566654422 10 00111122222348999999999999987666654
Q ss_pred CCCCccchHH---HHHHHHHhcCCcEEEeeCCCC
Q 039407 136 QMPGSLGYED---QDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 136 ~~pg~~~~~~---~~~~~~~~wGvdylK~D~~~~ 166 (397)
+..++. .+++.|+++|++.|.+|+-..
T Consensus 71 ----~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~ 100 (357)
T PF05913_consen 71 ----VLKKLGISYDDLSFFKELGIDGLRLDYGFS 100 (357)
T ss_dssp ----HHHTTT-BTTBTHHHHHHT-SEEEESSS-S
T ss_pred ----HHHHcCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 333331 246789999999999999765
No 92
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=63.30 E-value=13 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++..|+.+-. ....++.+.++|||+|-.|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n-------------~~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLN-------------DPENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCC-------------CHHHHHHHHHcCCCEEEecCC
Confidence 5789999999999999987310 133677889999999999864
No 93
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.09 E-value=48 Score=34.09 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEe----CCccccCCCCCCCCe----eecCCCCCCcHHHHHHHHHhCCCeEEEE
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNI----DDCWGEQDRDEKGNL----QARNTTFPSGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~i----DdgW~~~~rd~~G~~----~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 125 (397)
-.++.++++..+.+...|+.. -|+++ |.-|.+..--..+.. -.++ .| |=|+.++++.|++||++==|
T Consensus 60 ~~~~~el~~~ld~l~~ln~NT---v~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~-g~-DpLa~~I~~AHkr~l~v~aW 134 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNT---VYPQVWNDGDALYPSAVLPWSDGLPGVLGVDP-GY-DPLAFVIAEAHKRGLEVHAW 134 (418)
T ss_pred cccHHHHHHHHHHHHHcCCce---eEEEEecCccccccccccccccCcCcccCCCC-CC-ChHHHHHHHHHhcCCeeeec
Confidence 378999999999886655554 34444 222322211111111 0111 11 22899999999999999999
Q ss_pred eeCCcc---cc-------------------------------CCCCCCccchHHHHH-HHHHhcCCcEEEeeCC
Q 039407 126 SSAGYY---TC-------------------------------SKQMPGSLGYEDQDA-KTFASWGVDYLKYDNC 164 (397)
Q Consensus 126 ~~pg~~---~c-------------------------------~~~~pg~~~~~~~~~-~~~~~wGvdylK~D~~ 164 (397)
+.++.. +. .+.+|.++.|+..++ +..+.+.||.|-+|--
T Consensus 135 f~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 135 FNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred hhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 987531 00 013577889996655 6678999999999974
No 94
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.82 E-value=25 Score=38.39 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=40.9
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCC-----------------------------c----cccCC----CCCCccchHHHHHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSAG-----------------------------Y----YTCSK----QMPGSLGYEDQDAK 149 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg-----------------------------~----~~c~~----~~pg~~~~~~~~~~ 149 (397)
-+|.|++.+|++||++-|=+-.- . ..|.. .+|.++.++...++
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 39999999999999975432110 0 01211 24667777777777
Q ss_pred HH-HhcCCcEEEeeCCCC
Q 039407 150 TF-ASWGVDYLKYDNCYN 166 (397)
Q Consensus 150 ~~-~~wGvdylK~D~~~~ 166 (397)
.+ .+.|||.+.+|....
T Consensus 323 ~W~~e~gVDGFRfD~a~~ 340 (658)
T PRK03705 323 YWVETCHVDGFRFDLATV 340 (658)
T ss_pred HHHHHhCCCEEEEEcHhh
Confidence 75 579999999998654
No 95
>PRK08227 autoinducer 2 aldolase; Validated
Probab=62.15 E-value=39 Score=32.56 Aligned_cols=71 Identities=17% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGR 187 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~ 187 (397)
+..+++++|+.||-.-+|+..|... ......+..-++.=+|.|.|.||+.++. ..|+++.+++..
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~~-----~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~v 193 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKDM-----VRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPV 193 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCc-----CchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCC
Confidence 7888899999999877766433211 1112255556666789999999999972 457777777778
Q ss_pred CeEEEe
Q 039407 188 PIYYSL 193 (397)
Q Consensus 188 ~i~~~~ 193 (397)
|+++..
T Consensus 194 PVviaG 199 (264)
T PRK08227 194 PIVIAG 199 (264)
T ss_pred cEEEeC
Confidence 888763
No 96
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=62.05 E-value=1.1e+02 Score=31.08 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=41.8
Q ss_pred CCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC---C--CCCCCeeecCCCCCCcHHHHHHH
Q 039407 40 TPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD---R--DEKGNLQARNTTFPSGIKALADY 114 (397)
Q Consensus 40 ~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~---r--d~~G~~~~~~~~FP~Gl~~l~~~ 114 (397)
.+||+..........+|++.+....+.. .-|...|++-...-... . ...+.+..+.+.+=.++|.+++.
T Consensus 18 ~apm~~~~~~~~dg~~t~~~~~yy~~rA------~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~da 91 (382)
T cd02931 18 MAPMGPLGLADNDGAFNQRGIDYYVERA------KGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTER 91 (382)
T ss_pred eCCcCcccccCCCCCCCHHHHHHHHHHh------cCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHH
Confidence 4577643332233468888876666632 23444444432221110 0 00111112223333469999999
Q ss_pred HHhCCCeEEEEe
Q 039407 115 VHGKGLKLGIYS 126 (397)
Q Consensus 115 i~~~Glk~Giw~ 126 (397)
+|+.|-++.+=+
T Consensus 92 vh~~G~~i~~QL 103 (382)
T cd02931 92 VHAYGTKIFLQL 103 (382)
T ss_pred HHHcCCEEEEEc
Confidence 999999987443
No 97
>PLN02361 alpha-amylase
Probab=61.86 E-value=55 Score=33.52 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCee-----ecCCCCCC--cHHHHHHHHHhCCCeEEEEeeC--
Q 039407 58 DIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQ-----ARNTTFPS--GIKALADYVHGKGLKLGIYSSA-- 128 (397)
Q Consensus 58 ~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~-----~~~~~FP~--Gl~~l~~~i~~~Glk~Giw~~p-- 128 (397)
+.|.+.++.| +++|++.|.|=--.+.. ...|++. +| .+|-+ -++.|++.+|++|+|+-+=+-.
T Consensus 29 ~~i~~kl~~l-----~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDL-----AKSGFTSAWLPPPSQSL--APEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHH-----HHcCCCEEEeCCCCcCC--CCCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 5667777775 77788877663322211 1123332 33 35532 3999999999999996431100
Q ss_pred ----------------Cc---------cccC-------------------CCCCCccchHHHHHHHHH-hcCCcEEEeeC
Q 039407 129 ----------------GY---------YTCS-------------------KQMPGSLGYEDQDAKTFA-SWGVDYLKYDN 163 (397)
Q Consensus 129 ----------------g~---------~~c~-------------------~~~pg~~~~~~~~~~~~~-~wGvdylK~D~ 163 (397)
+. ..|. ..+|.+++++...++.++ +.|||.+.+|+
T Consensus 101 ~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDa 180 (401)
T PLN02361 101 RVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180 (401)
T ss_pred ccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 00 0110 024566777777777776 48999999999
Q ss_pred CCC
Q 039407 164 CYN 166 (397)
Q Consensus 164 ~~~ 166 (397)
..+
T Consensus 181 vk~ 183 (401)
T PLN02361 181 AKG 183 (401)
T ss_pred ccc
Confidence 866
No 98
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=61.72 E-value=41 Score=38.05 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCeEEEEeeC-------------------Cc------------cc-cCC---CCCCccchHHHHHHHH-
Q 039407 108 IKALADYVHGKGLKLGIYSSA-------------------GY------------YT-CSK---QMPGSLGYEDQDAKTF- 151 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~p-------------------g~------------~~-c~~---~~pg~~~~~~~~~~~~- 151 (397)
+|.|++.+|++||++-+=+-. +. .+ |.. .+|.++.++...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999997532211 00 01 211 2455667776666665
Q ss_pred HhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEecCCC
Q 039407 152 ASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSLCEWG 197 (397)
Q Consensus 152 ~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~c~~g 197 (397)
+++|||.|.+|-+.+- ..+..+.+++++++..+++++-.-.|.
T Consensus 486 ~ey~VDGFRfDlm~~~---~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHH---PKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhC---CHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 5899999999988652 244566788888888888877655564
No 99
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=59.96 E-value=44 Score=31.41 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCCcc--c--cCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCC------CccchHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSAGYY--T--CSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGS------KPMDRYP 176 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg~~--~--c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~y~ 176 (397)
-.+..+..+|++|.|+-+-+..... . ...+..+...|.+..++.+.++|+|.|=+|+-+.... ...+.|.
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~ 131 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFV 131 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHH
Confidence 3677888899999998655543211 1 1111122356677788888999999999999755321 1235666
Q ss_pred HHHHHHHh-cCC-CeEEEe
Q 039407 177 VMTRALMN-TGR-PIYYSL 193 (397)
Q Consensus 177 ~m~~al~~-~g~-~i~~~~ 193 (397)
.+.++|++ .++ ..++.+
T Consensus 132 ~lv~~Lr~~~~~~~kllt~ 150 (255)
T cd06542 132 RLIKELRKYMGPTDKLLTI 150 (255)
T ss_pred HHHHHHHHHhCcCCcEEEE
Confidence 77777764 343 445544
No 100
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=59.64 E-value=41 Score=29.85 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCCEEEEEEEcCCCceEEEEeccccCC
Q 039407 328 GYRIALLLVNRGPWRYAVTAKWEDIGI 354 (397)
Q Consensus 328 ~g~~~va~fN~~~~~~~~~i~l~~lGl 354 (397)
+++.+|.++|++.++++++|.+..+..
T Consensus 103 ~~~l~v~vVN~~~~~~~v~l~l~g~~~ 129 (177)
T PF06964_consen 103 GGELYVKVVNRSSEPQTVTLNLQGFSP 129 (177)
T ss_dssp TTEEEEEEEE-SSSBEEEEEEETTSTS
T ss_pred CCEEEEEEEECCCCCEEEEEEEcCCCC
Confidence 446999999998889999999885543
No 101
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.97 E-value=46 Score=33.50 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=68.2
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCcc-----------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDCW-----------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW-----------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|.+.++.+++ ...+.+|++-|.|=.+= .+...|.+|-=..|..|| +..+++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf---~~eii~air~~v 208 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRF---AAEVVKAIRAAV 208 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHc
Confidence 45899999988887754 34677899999886543 122346677555666788 78899999986
Q ss_pred C--CeEEEEeeCCccccCCCCCCccchH--HHHHHHHHhcCCcEEEee
Q 039407 119 G--LKLGIYSSAGYYTCSKQMPGSLGYE--DQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 119 G--lk~Giw~~pg~~~c~~~~pg~~~~~--~~~~~~~~~wGvdylK~D 162 (397)
| +.+|+=+.+.. .+.....+..... ...++.+.+.|+|||-+-
T Consensus 209 G~d~~v~vRis~~~-~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 209 GPDFPIILRFSQWK-QQDYTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred CCCCeEEEEECccc-ccccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4 67788777521 1111112212222 345566788999997663
No 102
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=58.81 E-value=42 Score=33.79 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCcc-----------ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDCW-----------GEQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW-----------~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|.+..+.++. ...+++|++-|.|-.+= .+...|+||-=..|..|| +..+++.|++.
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf---~~Eiv~aVr~~v 223 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARL---VLEVVDAGIAEW 223 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHH---HHHHHHHHHHHc
Confidence 45899999998887744 35677999999996552 122246677655677788 67888888874
Q ss_pred CC-eEEEEeeCCccccCCCCCCccch---HHHHHHHHHhcCCcEEEeeC
Q 039407 119 GL-KLGIYSSAGYYTCSKQMPGSLGY---EDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 119 Gl-k~Giw~~pg~~~c~~~~pg~~~~---~~~~~~~~~~wGvdylK~D~ 163 (397)
|- .+|+=+++....+ ..++.... ....++.+.+.|+|||-+-.
T Consensus 224 g~~~igvRis~~~~~~--~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 224 GADRIGIRISPLGTFN--NVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCCeEEEEECCccccc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 21 2666666532111 11222222 23556778899999998753
No 103
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=58.72 E-value=22 Score=33.35 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEee
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D 162 (397)
|+.+++.+|++|+++.+|..+. -....+.+.++|+|+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~--------------~~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPD--------------RPNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCC--------------hHHHHHHHHHhCCCEEecC
Confidence 8899999999999999999863 1456778889999998766
No 104
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=57.63 E-value=42 Score=33.48 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=64.3
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCC--ccc---------cCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDD--CWG---------EQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDd--gW~---------~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|.++|.+..+.+++ ..++++||+-|.|=. ||- +...|.+|--..+..|| +..+++.|++.
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~v 205 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAV 205 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHc
Confidence 35899999988877754 245678999998877 662 11236676544455566 67888888886
Q ss_pred CC--eEEEEeeCCccccCCCCCCcc--chHHHHHHHHHhcC-CcEEEee
Q 039407 119 GL--KLGIYSSAGYYTCSKQMPGSL--GYEDQDAKTFASWG-VDYLKYD 162 (397)
Q Consensus 119 Gl--k~Giw~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wG-vdylK~D 162 (397)
|. .+++=+.+... .++.. +-....++.+.+.| +|||-+-
T Consensus 206 g~~~~v~iRl~~~~~-----~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 206 GPDFIVGIRISGDED-----TEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCCCeEEEEeehhhc-----cCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 53 44555544211 12211 12235667788888 8988773
No 105
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=57.10 E-value=56 Score=29.53 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred cccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHH
Q 039407 73 AKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFA 152 (397)
Q Consensus 73 ~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 152 (397)
++.|+++++|=.. .|.-..|+ + ++.=.+..++.|+++|.|+=.-..++ +..++--+..++.++
T Consensus 22 k~~Gi~faiikat--------eG~~~~D~-~----~~~n~~~A~~aGl~vG~Yhf~~~~~~----~~a~~eA~~f~~~~~ 84 (192)
T cd06522 22 KNYGVKAVIVKLT--------EGTTYRNP-Y----AASQIANAKAAGLKVSAYHYAHYTSA----ADAQAEARYFANTAK 84 (192)
T ss_pred HHcCCCEEEEEEc--------CCCCccCh-H----HHHHHHHHHHCCCeeEEEEEEecCCh----HHHHHHHHHHHHHHH
Confidence 5567787777431 23323343 2 56677788999999999985421111 222222233445566
Q ss_pred hcCCc---EEEeeCCCCCCC-CccchHHHHHHHHHhcC--CCeEEE
Q 039407 153 SWGVD---YLKYDNCYNDGS-KPMDRYPVMTRALMNTG--RPIYYS 192 (397)
Q Consensus 153 ~wGvd---ylK~D~~~~~~~-~~~~~y~~m~~al~~~g--~~i~~~ 192 (397)
..|+. .+-+|.=..... ........+.+.+++.| +|++++
T Consensus 85 ~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 85 SLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred HcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 66654 355676433221 11223345666777666 588776
No 106
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.88 E-value=45 Score=33.36 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=66.6
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCc--c------c---cCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDC--W------G---EQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg--W------~---~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|.++|.+..+.+++ ..++++|++-|.|=.+ | . +...|.+|-=.-|..|| +..+++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~---~~eii~~vr~~v 208 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRF---PLAVVKAVQEVI 208 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHH---HHHHHHHHHHHh
Confidence 46899999988877754 3467789999988654 1 1 22235565434466677 67788888773
Q ss_pred ------CCeEEEEeeCCccccCCCCCCccch--HHHHHHHHHhcCCcEEEeeCC
Q 039407 119 ------GLKLGIYSSAGYYTCSKQMPGSLGY--EDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 119 ------Glk~Giw~~pg~~~c~~~~pg~~~~--~~~~~~~~~~wGvdylK~D~~ 164 (397)
.+.+|+=+.+.. +.+|.... ....++.+.+.|+|||-+...
T Consensus 209 g~~~~~~~~v~~R~s~~~-----~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 209 DKHADKDFILGYRFSPEE-----PEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred ccccCCCceEEEEECccc-----ccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 455666665521 11222222 245667889999999998753
No 107
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=56.69 E-value=33 Score=34.42 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=56.7
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCe-EEEEeeCCccccCCCCCCccchHHHHHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLK-LGIYSSAGYYTCSKQMPGSLGYEDQDAKT 150 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk-~Giw~~pg~~~c~~~~pg~~~~~~~~~~~ 150 (397)
.-++|.+-|+|.|.|...- . ...++.=.+|- ++.+.+.+++.+-. +=|++..+. ...+..
T Consensus 198 qi~aGAdavqifDsW~g~l--~--~~~~~~f~~~~-~~~i~~~vk~~~~~~pii~f~~ga--------------~~~l~~ 258 (352)
T COG0407 198 QIEAGADAVQIFDSWAGVL--S--MIDYDEFVLPY-MKRIVREVKEVKGGVPVIHFCKGA--------------GHLLED 258 (352)
T ss_pred HHHhCCCEEEeeccccccC--C--cccHHHHhhhH-HHHHHHHHHHhCCCCcEEEECCCc--------------HHHHHH
Confidence 3567889999999997531 1 11122223443 89999999987663 455554332 124677
Q ss_pred HHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCC
Q 039407 151 FASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRP 188 (397)
Q Consensus 151 ~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~ 188 (397)
++++|+|.+-+|+-.. +.+|-+..|..
T Consensus 259 m~~~g~d~l~vdw~v~-----------l~~a~~~~~~~ 285 (352)
T COG0407 259 MAKTGFDVLGVDWRVD-----------LKEAKKRLGDK 285 (352)
T ss_pred HHhcCCcEEeeccccC-----------HHHHHHHhCCC
Confidence 8999999999998643 66666666654
No 108
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=56.34 E-value=30 Score=30.79 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
-+.+++.+|+.|+++-+|+... ....++.+.++|||+|=.|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~--------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND--------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC--------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999998752 24567888999999998774
No 109
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=55.86 E-value=20 Score=34.58 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCC---C--CCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNT---T--FPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~---~--FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
+.++|.+.|+|||=|.... .. ...++ + .|. ++.+++.+|..|.+.++++... ...
T Consensus 153 ~~eaG~d~i~i~dp~~~~~----~~-~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH~cg~--------------~~~ 212 (306)
T cd00465 153 LIEAGAKALQIHEPAFSQI----NS-FLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHHSCYD--------------AAD 212 (306)
T ss_pred HHHhCCCEEEEeccccccc----CC-CCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEEECCC--------------HHH
Confidence 4567999999999887631 00 01111 1 132 6888888888887777665532 134
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEE
Q 039407 147 DAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYY 191 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~ 191 (397)
.+..+.+.|+|.+-+|+.. . .+.++.+..|..+.+
T Consensus 213 ~~~~l~~~~~d~~~~d~~~-~---------d~~~~~~~~~~~~~i 247 (306)
T cd00465 213 LLEEMIQLGVDVISFDMTV-N---------EPKEAIEKVGEKKTL 247 (306)
T ss_pred HHHHHHHhCcceEeccccc-C---------CHHHHHHHhCCCEEE
Confidence 5777889999999999874 1 244555666655433
No 110
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.78 E-value=67 Score=36.63 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCeEEEEeeC--------------------Cc------------cccCC----CCCCccchHHHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSA--------------------GY------------YTCSK----QMPGSLGYEDQDAKTF 151 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~p--------------------g~------------~~c~~----~~pg~~~~~~~~~~~~ 151 (397)
+|.|++.+|++|+++-+=+-. +. .+|.. .+|-++.++-..++.+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999997543211 00 01211 1233445555555554
Q ss_pred -HhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhc--------CCCeEEEecCCC
Q 039407 152 -ASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNT--------GRPIYYSLCEWG 197 (397)
Q Consensus 152 -~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~--------g~~i~~~~c~~g 197 (397)
+++|||.+.+|-+..-. .+....++++|++. |+.|++-.-.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i~---~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHLM---KRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEcccccc---HHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 58999999999987631 22344566666554 577877655564
No 111
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=53.21 E-value=89 Score=30.92 Aligned_cols=131 Identities=16% Similarity=0.094 Sum_probs=75.5
Q ss_pred cccceeeecccccccccccccccccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCc
Q 039407 6 ASSRATILGTGADDKLNHNNQPLRRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDC 85 (397)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdg 85 (397)
.||-+|.+|+|-...-+.++-+-.+. -.+.|-.+-.+|..+..+.+ .+++ ...+|+.++||-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~W~~ql~~~~-------~~~i-----~~~~~d~vVID~~ 73 (315)
T TIGR01370 11 ISSESTASGAGPAQTPPPVTVPMTPP-----SKKPALSAVQHWGYQLQNAD-------LNEI-----HTSPFELVVIDYS 73 (315)
T ss_pred hccCchhccCCCccCCCccccccCCc-----cccccccccceEEEEeCCCC-------hhhh-----hccCCCEEEEccc
Confidence 57777888877553333222222111 12344466778876665422 2223 3346899999942
Q ss_pred cccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc-----------------CCC------------
Q 039407 86 WGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC-----------------SKQ------------ 136 (397)
Q Consensus 86 W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c-----------------~~~------------ 136 (397)
-. |. +...|. +.-++.+|+.|-++=-|++.|..-- .+.
T Consensus 74 ~~-------g~---~~~~fs---~~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~ 140 (315)
T TIGR01370 74 KD-------GT---EDGTYS---PEEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKY 140 (315)
T ss_pred cc-------cC---cccCCC---HHHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEec
Confidence 11 11 112343 4556689999999999998764100 001
Q ss_pred -CCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 137 -MPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 137 -~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
+|..+.++...++.+.+-|||.|=+|.+..
T Consensus 141 ~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 233345555556677899999999999855
No 112
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=51.78 E-value=75 Score=29.90 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCcccc--------------CCCCCC---------ccchHHHHHHHHHhcCCcE-EEeeC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTC--------------SKQMPG---------SLGYEDQDAKTFASWGVDY-LKYDN 163 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c--------------~~~~pg---------~~~~~~~~~~~~~~wGvdy-lK~D~ 163 (397)
+..+.++||+.|+|+||=+.|.+... ....|| +...++..-+.+.+-|+++ |-+|+
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 77899999999999999999975211 112344 3334444444455667765 67776
Q ss_pred CCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 164 CYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 164 ~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
--.. ..+. .+.++|.++++..
T Consensus 177 GI~~--------~~i~-~~~~aGad~~V~G 197 (229)
T PRK09722 177 SCNQ--------KTYE-KLMEAGADVFIVG 197 (229)
T ss_pred CCCH--------HHHH-HHHHcCCCEEEEC
Confidence 4321 2232 3346788888863
No 113
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=51.66 E-value=24 Score=33.85 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|+.|+++..|+..-. -...++.+.+||||+|=.|+.
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n-------------~~~~~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNN-------------DAEAVERQADLGVDGVIVDHV 282 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCC-------------CHHHHHHHHHcCCCEEEeCCC
Confidence 5789999999999999975200 023677889999999988863
No 114
>smart00642 Aamy Alpha-amylase domain.
Probab=51.59 E-value=55 Score=29.00 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCccccCCC--CCCCCe-----eecCCCCC--CcHHHHHHHHHhCCCeEEEEee
Q 039407 57 EDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDR--DEKGNL-----QARNTTFP--SGIKALADYVHGKGLKLGIYSS 127 (397)
Q Consensus 57 e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~r--d~~G~~-----~~~~~~FP--~Gl~~l~~~i~~~Glk~Giw~~ 127 (397)
-+.+.+.++.+ +++|++.|.|=--+..... ...|+. .+++ +|= +.++.|++.+|++|+++-+=+.
T Consensus 18 ~~gi~~~l~yl-----~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYL-----KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHH-----HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34556666654 7788888876322221100 011221 1222 221 2499999999999999654444
Q ss_pred C
Q 039407 128 A 128 (397)
Q Consensus 128 p 128 (397)
+
T Consensus 92 ~ 92 (166)
T smart00642 92 I 92 (166)
T ss_pred C
Confidence 3
No 115
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=51.51 E-value=1e+02 Score=31.05 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
+++.+++.|..+ ++.|+.++- .|.++ .|.+...++--+ ..|++.|.++.++.|+.+-- ++
T Consensus 130 ~~~~~~~~A~~l-----k~~g~~~~r--~~~~k-pRtsp~~f~g~~---~e~l~~L~~~~~~~Gl~~~t--~v------- 189 (360)
T PRK12595 130 SYEQVEAVAKAL-----KAKGLKLLR--GGAFK-PRTSPYDFQGLG---VEGLKILKQVADEYGLAVIS--EI------- 189 (360)
T ss_pred CHHHHHHHHHHH-----HHcCCcEEE--ccccC-CCCCCccccCCC---HHHHHHHHHHHHHcCCCEEE--ee-------
Confidence 588999999987 446665554 34433 333321222111 14799999999999988631 22
Q ss_pred CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 136 QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 136 ~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
|-...++.+.+. +|++|+=..... . ..+.+++.++|.|++++
T Consensus 190 -------~d~~~~~~l~~~-vd~lkI~s~~~~------n-~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 190 -------VNPADVEVALDY-VDVIQIGARNMQ------N-FELLKAAGRVNKPVLLK 231 (360)
T ss_pred -------CCHHHHHHHHHh-CCeEEECccccc------C-HHHHHHHHccCCcEEEe
Confidence 233456667788 999998654321 1 23445555566666665
No 116
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=51.45 E-value=1.1e+02 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCeEEEEe-eCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 108 IKALADYVHGKGLKLGIYS-SAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~-~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
++.+.++++++|+++++-+ .|. .....++...+.|+||+|+...
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~-------------t~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVK-------------DKVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC-------------ChHHHHHHHHHcCCCEEEEcCC
Confidence 6899999999999999843 331 1334455567789999999643
No 117
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=50.87 E-value=40 Score=32.37 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHHHhC-CCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGK-GLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~-Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++ |+++-.|+--. ..+++.+.+||||.|=.|+-
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~---------------~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINT---------------ADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCC---------------HHHHHHHHHcCCCEEEeCCc
Confidence 7889999999 99999998742 23678899999999998873
No 118
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=50.03 E-value=34 Score=32.60 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++.+|+--. ...++.+.+||||+|=.|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLND---------------EEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECC---------------HHHHHHHHhcCCCEEEeCCc
Confidence 678999999999999998542 23678899999999998874
No 119
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=49.69 E-value=52 Score=36.83 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=46.0
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCC----CCC--CcHHHHHHHHHhCCCeEEE
Q 039407 51 FWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNT----TFP--SGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~----~FP--~Gl~~l~~~i~~~Glk~Gi 124 (397)
+....|-+.+.+.++.+ +++|++.|.|=--++.......|+...|.. .|- ++++.|++.+|++||++-+
T Consensus 9 ~~~~~tf~~~~~~L~YL-----~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIl 83 (825)
T TIGR02401 9 LRAGFTFDDAAALLPYL-----KSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIV 83 (825)
T ss_pred eCCCCCHHHHHHhhHHH-----HHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33467888889999987 778888887755444322222344433321 232 2599999999999999655
Q ss_pred Ee
Q 039407 125 YS 126 (397)
Q Consensus 125 w~ 126 (397)
=+
T Consensus 84 Di 85 (825)
T TIGR02401 84 DI 85 (825)
T ss_pred Ee
Confidence 43
No 120
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=49.12 E-value=1.4e+02 Score=25.56 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=36.5
Q ss_pred CcccCceEEEeCCc--cccC-CCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 72 LAKLGYIYVNIDDC--WGEQ-DRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 72 l~~~Gy~~i~iDdg--W~~~-~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
|+.+|.+.++|..+ +--. -....|...|.-+ -+=|+.+++.+|++|+++=+|++...
T Consensus 9 lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 9 LKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 46778899999654 2100 0111233333322 13379999999999999999998753
No 121
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.06 E-value=54 Score=36.92 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=45.3
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCee-----ecCCCCC--CcHHHHHHHHHhCCCeEE
Q 039407 51 FWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQ-----ARNTTFP--SGIKALADYVHGKGLKLG 123 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~-----~~~~~FP--~Gl~~l~~~i~~~Glk~G 123 (397)
+....+-+.+.+.++.+ +++|++.|.+=--++.......|+.. +|+ .|- ++++.|++.+|++||++-
T Consensus 13 ~~~~~tf~~~~~~l~YL-----~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VI 86 (879)
T PRK14511 13 FHAGFTFDDAAELVPYF-----ADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLI 86 (879)
T ss_pred eCCCCCHHHHHHHhHHH-----HHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEE
Confidence 34467888999999987 67788888764444332112233332 232 232 369999999999999966
Q ss_pred EEe
Q 039407 124 IYS 126 (397)
Q Consensus 124 iw~ 126 (397)
+=+
T Consensus 87 lDi 89 (879)
T PRK14511 87 LDI 89 (879)
T ss_pred EEe
Confidence 544
No 122
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.04 E-value=20 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.1
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 107 GIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
....++++||++|+|+|+=+.||+
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGT 123 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCC
Confidence 468999999999999999999986
No 123
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.91 E-value=1.4e+02 Score=29.90 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCeEEEE--eeCCccc-cCC--CCCCccchHHHHHHHHH--hcCCcEEEeeCCCCC----CC-------
Q 039407 108 IKALADYVHGKGLKLGIY--SSAGYYT-CSK--QMPGSLGYEDQDAKTFA--SWGVDYLKYDNCYND----GS------- 169 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw--~~pg~~~-c~~--~~pg~~~~~~~~~~~~~--~wGvdylK~D~~~~~----~~------- 169 (397)
++.+++.+++.|+.+-+- .-+.... -.. +..-.-..+..-++.+. +.|+|.+|+.+.... +.
T Consensus 145 l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~ 224 (340)
T PRK12858 145 VERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAY 224 (340)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccc
Confidence 566677777777766542 2221000 000 00001134456667787 599999999997542 11
Q ss_pred CccchHHHHHHHHHhcCCCeEEE
Q 039407 170 KPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 170 ~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
+..+.-..+.+..+.++.|+++.
T Consensus 225 ~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 225 TQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred cHHHHHHHHHHHHhhCCCCEEEE
Confidence 12222344667777789999885
No 124
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=48.67 E-value=84 Score=30.07 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
+++.+++.|..+.+. |.+ ++. .+.++ .|.....+.-.. -.|++.|.++.++.|+.+-- ++
T Consensus 37 ~~~~~~~~A~~lk~~-----~~k-~~r-~~~~K-pRtsp~s~~g~g---~~gl~~l~~~~~~~Gl~~~t--~~------- 96 (260)
T TIGR01361 37 SEEQIMETARFVKEA-----GAK-ILR-GGAFK-PRTSPYSFQGLG---EEGLKLLRRAADEHGLPVVT--EV------- 96 (260)
T ss_pred CHHHHHHHHHHHHHH-----HHH-hcc-Cceec-CCCCCccccccH---HHHHHHHHHHHHHhCCCEEE--ee-------
Confidence 688889999987553 333 222 23333 343311122111 24899999999999998642 21
Q ss_pred CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 136 QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 136 ~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
|-...++.+.+. +|++|+=.... .-..+.+++.++|.|++++.
T Consensus 97 -------~d~~~~~~l~~~-~d~lkI~s~~~-------~n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 97 -------MDPRDVEIVAEY-ADILQIGARNM-------QNFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred -------CChhhHHHHHhh-CCEEEECcccc-------cCHHHHHHHhcCCCcEEEeC
Confidence 223345555666 89999855422 11336666677788887764
No 125
>PLN02801 beta-amylase
Probab=48.60 E-value=30 Score=36.21 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
.+.+.+..+..+| |.+|++=|.+|.=|-..++...+.... +|-+.|++-+++.|||+=
T Consensus 34 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 34 EDEEGLEKQLKRL-----KEAGVDGVMVDVWWGIVESKGPKQYDW------SAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEE
Confidence 4567778777775 788999999997776555444332222 379999999999999963
No 126
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=48.49 E-value=13 Score=33.66 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceE-EEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIY-VNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSA 128 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~-i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~p 128 (397)
.+.+.-.++|+.+.+. ++..+-.+ +.||=-... ......+....-.-++.++++++++|.+++||..+
T Consensus 67 ~~~~~a~~qA~~f~~~-~~~~~~~~~~~lD~E~~~-----~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iY~~~ 135 (191)
T cd06414 67 VTVAEAREEAEFVLRL-IKGYKLSYPVYYDLEDET-----QLGAGLSKDQRTDIANAFCETIEAAGYYPGIYANL 135 (191)
T ss_pred CCHHHHHHHHHHHHHH-hhccCCCCCeEEEeecCC-----CCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEecH
Confidence 4555667778877663 44444333 456632211 11100111112233788999999999999999987
No 127
>PLN02803 beta-amylase
Probab=48.47 E-value=30 Score=36.50 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
+.+.+.....+| |.+|++=|.+|-=|-..++...+.... +|-+.|++-+++.|||+=
T Consensus 105 ~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq 161 (548)
T PLN02803 105 KPRAMNASLMAL-----RSAGVEGVMVDAWWGLVEKDGPMKYNW------EGYAELVQMVQKHGLKLQ 161 (548)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEE
Confidence 456777777775 788999999997776555444332222 379999999999999964
No 128
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=48.39 E-value=33 Score=31.55 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.0
Q ss_pred ecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 99 ARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 99 ~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
...+..++ +..+.++||++|+|+||-+.|++
T Consensus 86 ~H~E~~~~-~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 86 FHAEATED-PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp EEGGGTTT-HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred EcccchhC-HHHHHHHHHHhCCCEEEEEECCC
Confidence 33344444 78999999999999999999976
No 129
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=47.95 E-value=26 Score=33.07 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCC-----eeecCCCCCC--cHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 58 DIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGN-----LQARNTTFPS--GIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 58 ~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~-----~~~~~~~FP~--Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
+.|.+.++.| +++|++.|.|=--+.... ...|+ ..+|+ +|-. .++.|++.+|++||++-+=+.+..
T Consensus 4 ~gi~~kLdyl-----~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH 76 (316)
T PF00128_consen 4 RGIIDKLDYL-----KDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNH 76 (316)
T ss_dssp HHHHHTHHHH-----HHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSE
T ss_pred HHHHHhhHHH-----HHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeeccc
Confidence 4566777776 778888887743333211 12232 23454 5521 389999999999999876443310
Q ss_pred -----c----------------c------cC---------------------------------CCCCCccchHHHHHHH
Q 039407 131 -----Y----------------T------CS---------------------------------KQMPGSLGYEDQDAKT 150 (397)
Q Consensus 131 -----~----------------~------c~---------------------------------~~~pg~~~~~~~~~~~ 150 (397)
. . +. ..+|.++.++...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~ 156 (316)
T PF00128_consen 77 TSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKF 156 (316)
T ss_dssp EETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccc
Confidence 0 0 00 0124456666667777
Q ss_pred HHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEE
Q 039407 151 FASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYY 191 (397)
Q Consensus 151 ~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~ 191 (397)
+.+.|||.+.+|....- ..+..+.+.++++...+++++
T Consensus 157 w~~~giDGfR~D~~~~~---~~~~~~~~~~~~~~~~~~~~~ 194 (316)
T PF00128_consen 157 WIEEGIDGFRLDAAKHI---PKEFWKEFRDEVKEEKPDFFL 194 (316)
T ss_dssp HHHTTESEEEETTGGGS---SHHHHHHHHHHHHHHHTTSEE
T ss_pred hhhceEeEEEEcccccc---chhhHHHHhhhhhhhccccce
Confidence 78889999999997642 124445566666654444433
No 130
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=47.72 E-value=20 Score=32.03 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=31.0
Q ss_pred CEEEEEEEcCCCceEEEEeccccCCCCCCeeEEEEcCCCcccceeeeeeE-----EEEEcCCcEEEEEE
Q 039407 330 RIALLLVNRGPWRYAVTAKWEDIGIPPNSVVEARDLWEHKTLTKQFVGNL-----SAMVGSHACKMYIL 393 (397)
Q Consensus 330 ~~~va~fN~~~~~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~g~~~g~~-----~~~L~ph~~~ll~l 393 (397)
+.+|++||.+.++++++++ . +. + ++++.+=....-....+.++ +++||++.+++|.-
T Consensus 105 ~~iVVvfNat~~~~t~~~~--~--~~--g-~~Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 105 DGIVVVFNATPEEQTFTVP--G--LA--G-FQLHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp EEEEEEEE-SSS-EEEETG--G--GS--S--EE-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred CeEEEEEeCCCCeEEEEcC--C--cC--c-eEechHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 4589999999888776655 2 22 1 66666653321100111122 68999999999863
No 131
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.03 E-value=62 Score=30.69 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
.+.|.++++++|+.|. .+|+ -...++.+.+.|++++|+=-+
T Consensus 58 ~~~L~~~~~~~gi~f~--stpf--------------d~~s~d~l~~~~~~~~KIaS~ 98 (241)
T PF03102_consen 58 HKELFEYCKELGIDFF--STPF--------------DEESVDFLEELGVPAYKIASG 98 (241)
T ss_dssp HHHHHHHHHHTT-EEE--EEE---------------SHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHcCCEEE--ECCC--------------CHHHHHHHHHcCCCEEEeccc
Confidence 6899999999999863 3332 234466678889999999654
No 132
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.74 E-value=39 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++.+|+ +... + --...++.+.++|||.|=.|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~---------n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-N---------DNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-C---------CCHHHHHHHHHcCCCEEEcCCH
Confidence 678999999999999997 2210 1 1145677788999999998874
No 133
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=46.20 E-value=1.1e+02 Score=28.51 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCcccc--------------CCCCCC--ccchHHH-------HHHHHHhcCCcE-EEeeC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTC--------------SKQMPG--SLGYEDQ-------DAKTFASWGVDY-LKYDN 163 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c--------------~~~~pg--~~~~~~~-------~~~~~~~wGvdy-lK~D~ 163 (397)
+..+.++||+.|+|+||=+.|.+..+ ....|| -+.|+.. .-+.+.+.|.++ |-+|+
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG 178 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 67889999999999999999976321 112455 3445432 222233446654 66666
Q ss_pred CCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 164 CYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 164 ~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
--. . ..+ ..+.++|.++++..
T Consensus 179 GI~-----~---eti-~~l~~aGaDi~V~G 199 (223)
T PRK08745 179 GVK-----A---DNI-GAIAAAGADTFVAG 199 (223)
T ss_pred CCC-----H---HHH-HHHHHcCCCEEEEC
Confidence 422 0 122 23456788888863
No 134
>PLN00197 beta-amylase; Provisional
Probab=46.04 E-value=34 Score=36.19 Aligned_cols=58 Identities=26% Similarity=0.400 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
.+.+.+.....+| |.+|++=|.+|.=|-..+++..+.... +|-+.|++-+++.|||+=
T Consensus 124 ~~~~~l~~~L~~L-----K~~GVdGVmvDvWWGiVE~~~p~~YdW------sgY~~L~~mvr~~GLKlq 181 (573)
T PLN00197 124 NRRKAMKASLQAL-----KSAGVEGIMMDVWWGLVERESPGVYNW------GGYNELLEMAKRHGLKVQ 181 (573)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEE
Confidence 3566777777775 788999999997776555444332222 379999999999999964
No 135
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.89 E-value=74 Score=29.97 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc--c-CCCCCCcc-chHHHHHHHHHhcCCcEEEeeCCCCCC
Q 039407 93 EKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT--C-SKQMPGSL-GYEDQDAKTFASWGVDYLKYDNCYNDG 168 (397)
Q Consensus 93 ~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~--c-~~~~pg~~-~~~~~~~~~~~~wGvdylK~D~~~~~~ 168 (397)
..|.+...+ -+..+..+.+.+|++|+|+-+-+.-+... . .-..|..+ .+++..++.++++|+|.|=+|+-+...
T Consensus 35 ~~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~ 112 (253)
T cd06545 35 ANGTLNANP--VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV 112 (253)
T ss_pred CCCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc
Confidence 356665432 12347788899999999976655432100 0 00123322 466788888999999999999976542
Q ss_pred CCccchHHHHHHHH
Q 039407 169 SKPMDRYPVMTRAL 182 (397)
Q Consensus 169 ~~~~~~y~~m~~al 182 (397)
. .+.|..+.+.|
T Consensus 113 ~--~~~~~~fv~~L 124 (253)
T cd06545 113 T--FGDYLVFIRAL 124 (253)
T ss_pred c--HhHHHHHHHHH
Confidence 2 34455444443
No 136
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=45.79 E-value=50 Score=30.72 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
+.+++.+|++|+++.+|+--. ...++.+.+||||.|=.|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~---------------~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIND---------------LKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHcCCCEEEeCCCC
Confidence 688999999999999997431 346888999999999999863
No 137
>PLN02784 alpha-amylase
Probab=45.52 E-value=1.6e+02 Score=33.26 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCe-----eecCCCCC--CcHHHHHHHHHhCCCeEEE
Q 039407 57 EDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNL-----QARNTTFP--SGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 57 e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~-----~~~~~~FP--~Gl~~l~~~i~~~Glk~Gi 124 (397)
-..|.+.++.| +++|++.|.|=--.... ...|++ .+| .+|- +-|+.|++.+|++|+++-+
T Consensus 520 ~~~I~ekldyL-----~~LG~taIWLpP~~~s~--s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIl 586 (894)
T PLN02784 520 YMELGEKAAEL-----SSLGFTVVWLPPPTESV--SPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLG 586 (894)
T ss_pred HHHHHHHHHHH-----HHhCCCEEEeCCCCCCC--CCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 46777888876 67788877663322211 112322 233 3553 2499999999999998543
No 138
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=44.89 E-value=1.4e+02 Score=27.91 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCC--CeEEEEeeCCcccc
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKG--LKLGIYSSAGYYTC 133 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~G--lk~Giw~~pg~~~c 133 (397)
+...+.+.++.+ .+.|.+++-+| -.| |.+.|| -.| |+ .++++|++.+ +.+=+.+.+
T Consensus 17 d~~~l~~~~~~l-----~~~~~~~~H~D------imD--g~fvpn-~~~--G~-~~v~~lr~~~~~~~lDvHLm~----- 74 (228)
T PTZ00170 17 DFSKLADEAQDV-----LSGGADWLHVD------VMD--GHFVPN-LSF--GP-PVVKSLRKHLPNTFLDCHLMV----- 74 (228)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEe------ccc--CccCCC-cCc--CH-HHHHHHHhcCCCCCEEEEECC-----
Q ss_pred CCCCCCccchHHHHHHHHHhcCCcEE
Q 039407 134 SKQMPGSLGYEDQDAKTFASWGVDYL 159 (397)
Q Consensus 134 ~~~~pg~~~~~~~~~~~~~~wGvdyl 159 (397)
......++.+.+.|+|++
T Consensus 75 --------~~p~~~i~~~~~~Gad~i 92 (228)
T PTZ00170 75 --------SNPEKWVDDFAKAGASQF 92 (228)
T ss_pred --------CCHHHHHHHHHHcCCCEE
No 139
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=44.82 E-value=1.3e+02 Score=28.41 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCC--eEEEEeeCCcccc--------------CCCCCC--ccch-------HHHHHHHHHhcCCcE-EEe
Q 039407 108 IKALADYVHGKGL--KLGIYSSAGYYTC--------------SKQMPG--SLGY-------EDQDAKTFASWGVDY-LKY 161 (397)
Q Consensus 108 l~~l~~~i~~~Gl--k~Giw~~pg~~~c--------------~~~~pg--~~~~-------~~~~~~~~~~wGvdy-lK~ 161 (397)
+..+.++||+.|+ |+||=+.|.+..+ ....|| .+.| +++.-+...+.|+++ |-+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7788999999999 9999999976321 112354 2333 344444455667765 677
Q ss_pred eCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 162 DNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 162 D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
|+--. . ..+. .+.++|.++++..
T Consensus 185 DGGI~-----~---~ti~-~l~~aGaD~~V~G 207 (228)
T PRK08091 185 DGSMT-----L---ELAS-YLKQHQIDWVVSG 207 (228)
T ss_pred ECCCC-----H---HHHH-HHHHCCCCEEEEC
Confidence 76432 1 2222 3346788888864
No 140
>PLN02161 beta-amylase
Probab=44.81 E-value=36 Score=35.73 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
+.+.+.....+| |.+|++=|.+|-=|-..++...+.... +|-+.|++-+++.|||+=
T Consensus 115 ~~~al~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq 171 (531)
T PLN02161 115 RLKALTVSLKAL-----KLAGVHGIAVEVWWGIVERFSPLEFKW------SLYEELFRLISEAGLKLH 171 (531)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEE
Confidence 345566666664 888999999997776555443222222 379999999999999964
No 141
>PLN02705 beta-amylase
Probab=44.08 E-value=37 Score=36.42 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
.+.+.+.....+| |.+|++=|.+|.=|-..++...+.... +|-+.|++-+++.|||+=
T Consensus 265 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~~P~~YdW------sgY~~L~~mvr~~GLKlq 322 (681)
T PLN02705 265 VDPEGVRQELSHM-----KSLNVDGVVVDCWWGIVEGWNPQKYVW------SGYRELFNIIREFKLKLQ 322 (681)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeEeecCCCCcCCc------HHHHHHHHHHHHcCCeEE
Confidence 4567788777775 788999999997665555433222222 379999999999999964
No 142
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=44.03 E-value=1.4e+02 Score=29.97 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCc----cchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGS----LGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~----~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
+..+++++|+.||-.-+|.-|--..- ..++. -+.+..-++.=++.|.|.||+.++..
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i--~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAF--KKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCccc--CCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 78888999999999999987732111 11221 13445555666899999999999854
No 143
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.96 E-value=55 Score=30.81 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE---------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 688999999999999997531 34567788999999998874
No 144
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=43.87 E-value=69 Score=32.29 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEeCCccccCCCCCCCCeee-cCCCCCCcHH-HHHHHH----HhC--CCeEEEEe
Q 039407 57 EDIIKAAADALVS--SGLAKLGYIYVNIDDCWGEQDRDEKGNLQA-RNTTFPSGIK-ALADYV----HGK--GLKLGIYS 126 (397)
Q Consensus 57 e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~-~~~~FP~Gl~-~l~~~i----~~~--Glk~Giw~ 126 (397)
++.+.+.|+++.+ ..|.++|.+||||||.-.....+..++-.. ....-|+.+. ..++.+ ... ++.+++++
T Consensus 162 ~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~Hi 241 (368)
T PRK06520 162 DDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHV 241 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEe
Confidence 5666667766644 247889999999999854321111000000 0000122221 122222 222 66678888
Q ss_pred eCCccccCCCCCCccchHHHHHHH-HHhcCCcEEEeeCCC
Q 039407 127 SAGYYTCSKQMPGSLGYEDQDAKT-FASWGVDYLKYDNCY 165 (397)
Q Consensus 127 ~pg~~~c~~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~ 165 (397)
+.|........+|. ++..+.. |.+..+|.+=+++..
T Consensus 242 C~Gn~~~~~~~~~~---y~~i~~~L~~~~~vd~~~lE~~~ 278 (368)
T PRK06520 242 CRGNFRSTWISEGG---YEPVAETLFGGVNVDAFFLEYDN 278 (368)
T ss_pred ecCCCCCccccccc---hhHHHHHHHhhcCCCeEEEEecc
Confidence 87654322222343 4455665 678999999998864
No 145
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=43.29 E-value=49 Score=33.68 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=35.6
Q ss_pred HHHHHHHcCCcccCceEEEe----CCccccCCCCCCCCeeecCCCCCCc--HHHHHHHHHhCCCeEEEEeeC
Q 039407 63 AADALVSSGLAKLGYIYVNI----DDCWGEQDRDEKGNLQARNTTFPSG--IKALADYVHGKGLKLGIYSSA 128 (397)
Q Consensus 63 ~ad~l~~~gl~~~Gy~~i~i----DdgW~~~~rd~~G~~~~~~~~FP~G--l~~l~~~i~~~Glk~Giw~~p 128 (397)
-|+.+ |++|.+|+++ =||..-... .+-.|.. +.+=|-+ ++.+++.+++.||.||||+.-
T Consensus 59 War~f-----K~aGAKyvilvakHHDGFaLw~t-~ys~wns-vk~GpKrDlvgela~Avr~qGL~FGvy~s~ 123 (430)
T COG3669 59 WARLF-----KEAGAKYVILVAKHHDGFALWPT-DYSVWNS-VKRGPKRDLVGELAKAVREQGLRFGVYLSG 123 (430)
T ss_pred HHHHH-----HHcCCcEEEEeeeecCCeeeccc-ccccccc-cccCCcccHHHHHHHHHHHcCCeeeEeecc
Confidence 36665 6678888887 234221110 1222221 2232322 789999999999999999983
No 146
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=43.16 E-value=14 Score=33.45 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEeeCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAG 129 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg 129 (397)
++.+++.+++.|.++|||+...
T Consensus 112 ~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 112 LQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHhCCeEEEEcCcc
Confidence 7889999999999999999873
No 147
>PLN03244 alpha-amylase; Provisional
Probab=42.81 E-value=32 Score=38.26 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHhCCCeEEEEeeCC---------------cc------------ccC------CCCCCccchHHHHHHH-
Q 039407 105 PSGIKALADYVHGKGLKLGIYSSAG---------------YY------------TCS------KQMPGSLGYEDQDAKT- 150 (397)
Q Consensus 105 P~Gl~~l~~~i~~~Glk~Giw~~pg---------------~~------------~c~------~~~pg~~~~~~~~~~~- 150 (397)
|+.||.|+|.+|++|+++-|=+-+. .. ++. ..+|+++.|+-..++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5579999999999999875433221 00 000 0146677777766766
Q ss_pred HHhcCCcEEEeeCC
Q 039407 151 FASWGVDYLKYDNC 164 (397)
Q Consensus 151 ~~~wGvdylK~D~~ 164 (397)
+.+.+||.+.+|..
T Consensus 520 leEyhIDGFRfDaV 533 (872)
T PLN03244 520 ITEYQIDGFQFHSL 533 (872)
T ss_pred HHHhCcCcceeecc
Confidence 57999999999976
No 148
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=41.79 E-value=77 Score=31.18 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCC-----
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAG----- 129 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg----- 129 (397)
.+.+.+.++|++++| .|++-++|. +-+....+.. ..+-.+++.|++-.+..|+|+.|=+.-.
T Consensus 54 ~~~~R~~~YARllAS-----iGINgvvlN------NVNa~~~~Lt--~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~l 120 (328)
T PF07488_consen 54 RDLTRYRDYARLLAS-----IGINGVVLN------NVNANPKLLT--PEYLDKVARLADVFRPYGIKVYLSVNFASPIEL 120 (328)
T ss_dssp S--HHHHHHHHHHHH-----TT--EEE-S-------SS--CGGGS--TTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHT
T ss_pred cchhHHHHHHHHHhh-----cCCceEEec------ccccChhhcC--HHHHHHHHHHHHHHhhcCCEEEEEeeccCCccc
Confidence 467899999999865 456677775 2333333332 3455679999999999999999887643
Q ss_pred --ccccCCCCCCccchHHHHHHHH----HhcCCcEEEeeCCCCCC-----CCccchHHHHHHHHHhcC
Q 039407 130 --YYTCSKQMPGSLGYEDQDAKTF----ASWGVDYLKYDNCYNDG-----SKPMDRYPVMTRALMNTG 186 (397)
Q Consensus 130 --~~~c~~~~pg~~~~~~~~~~~~----~~wGvdylK~D~~~~~~-----~~~~~~y~~m~~al~~~g 186 (397)
..|..+-.|.+++|.+..++.+ =+.|==.||-|--+..+ .++.+.-..+.+||+--|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~YgRthAdGANmlA~Al~P~G 188 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYGRTHADGANMLARALKPHG 188 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT--HHHHHHHHHHHHGGGT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccCCCchhhHHHHHHHhhccC
Confidence 2355556688999987666553 35555567886644432 223344445778887555
No 149
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=40.70 E-value=1.4e+02 Score=28.26 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=42.1
Q ss_pred CCEEEEEEEcCCCceEEEEeccccC---CCCCCeeEEEEcCCCcccceeeeeeEEEEEcCCcEEEEEEEeC
Q 039407 329 YRIALLLVNRGPWRYAVTAKWEDIG---IPPNSVVEARDLWEHKTLTKQFVGNLSAMVGSHACKMYILKPI 396 (397)
Q Consensus 329 g~~~va~fN~~~~~~~~~i~l~~lG---l~~~~~~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll~l~p~ 396 (397)
....+=+.|.++++..+.+.+.++- ...+....+....+++- +-..-.+.|+|++..++||...
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eL----iaSP~~l~L~pg~~q~IRli~l 99 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGL----VVSPEKFALPAGTTRTVRVISL 99 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcE----EEcCceeEECCCCeEEEEEEEc
Confidence 3468899999999999988887773 22221222222344442 2234468999999999998754
No 150
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=40.44 E-value=69 Score=30.12 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++..|+-.. ...++.+.++|||+|=.|.-
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~---------------~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND---------------PARARELLRWGVDCICTDRI 239 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHcCCCEEEeCCh
Confidence 789999999999999997431 23567889999999999875
No 151
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.02 E-value=46 Score=32.30 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|++|+++..|+..-. ....++.+.++|||.|-.|+
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~n-------------~~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDNN-------------DPENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCCC-------------CHHHHHHHHHcCCCEEEecC
Confidence 5889999999999999987210 13467789999999999986
No 152
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=39.94 E-value=56 Score=28.01 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=36.3
Q ss_pred cccccCCCCCCCceEEechhhhccCCC----HHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCC
Q 039407 30 RNLLANGLAETPAMGWNSWNHFWGNIN----EDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFP 105 (397)
Q Consensus 30 ~~~~~~g~~~~pp~GwnSW~~~~~~i~----e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP 105 (397)
.....+|+.--|..-+......+..-. .+.-.+.+.+..+.|+++-=.-|+-|| +... ...+...-.-|
T Consensus 45 ~~i~~~Gl~i~pIyq~~~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gt~IYfavD--~d~~----~~~~~~~i~~Y- 117 (136)
T PF08924_consen 45 QDIRAAGLRIFPIYQGGGRETSDFTYGYAQGVADARDAVAAARALGFPAGTPIYFAVD--YDAT----DAECDSAILPY- 117 (136)
T ss_dssp HHHHHTT-EEEEEE--------S-B--HHHHHHHHHHHHHHHHHTT--SS-EEEEE----TS-B-----HH-------H-
T ss_pred HHHHHCCCEEEEEEecccccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEee--cCCC----chhhhhHHHHH-
Confidence 344456765555533322222222222 222333344445567776555789998 2211 11111111122
Q ss_pred CcHHHHHHHHHhCCCeEEEE
Q 039407 106 SGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 106 ~Gl~~l~~~i~~~Glk~Giw 125 (397)
++...+.+|..|+++|||
T Consensus 118 --~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 118 --FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp --HHHHHHHHGGGT-EEEEE
T ss_pred --HHHHHHHHhhCCCcceee
Confidence 899999999999999998
No 153
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=39.90 E-value=80 Score=31.02 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=53.5
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCCC-----CCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNTT-----FPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~-----FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
+.++|.+.|+|+|.|... .+ ..|+- .|- ++.+++.+|++ .+.|++ |+. ...
T Consensus 189 ~~~aGad~I~i~d~~a~~------~~-lsp~~f~ef~~p~-~~~i~~~i~~~--~~ilH~------cG~--------~~~ 244 (339)
T PRK06252 189 QLEAGADVICIADPSASP------EL-LGPKMFEEFVLPY-LNKIIDEVKGL--PTILHI------CGD--------LTS 244 (339)
T ss_pred HHHcCCCEEEeCCCCccc------cc-cCHHHHHHHHHHH-HHHHHHHhccC--CcEEEE------CCC--------chH
Confidence 456799999999998742 11 11111 233 68889999886 444444 432 134
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 147 DAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
.+..+++.|+|-+-+|... .+.++.+..|..+.+.
T Consensus 245 ~l~~~~~~g~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 279 (339)
T PRK06252 245 ILEEMADCGFDGISIDEKV-----------DVKTAKENVGDRAALI 279 (339)
T ss_pred HHHHHHhcCCCeeccCCCC-----------CHHHHHHHhCCCeEEE
Confidence 5777888999998887653 2455555666555443
No 154
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=39.88 E-value=2.6e+02 Score=25.51 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCcccc--CCCCCCCCeeecCCCCCCcHHHHHHHHHhC-CCeEEEEeeCCccc
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGE--QDRDEKGNLQARNTTFPSGIKALADYVHGK-GLKLGIYSSAGYYT 132 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~--~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~-Glk~Giw~~pg~~~ 132 (397)
+.+.+.+.|+.+ +++|++-|.|-.|--. ...|.+|.-..+..+| +..+++.+++. ++.+.+-+..+.
T Consensus 65 ~~~~~~~aa~~~-----~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~---~~eii~~v~~~~~~~v~vk~r~~~-- 134 (231)
T cd02801 65 DPETLAEAAKIV-----EELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL---VAEIVRAVREAVPIPVTVKIRLGW-- 134 (231)
T ss_pred CHHHHHHHHHHH-----HhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHH---HHHHHHHHHHhcCCCEEEEEeecc--
Confidence 466777777765 5578888888655311 1123444333332233 77888888764 334444333321
Q ss_pred cCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 133 CSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 133 c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
. + .......++.+.+.|+|+|.+..-
T Consensus 135 ---~-~--~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 135 ---D-D--EEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred ---C-C--chHHHHHHHHHHHhCCCEEEECCC
Confidence 1 1 124456678889999999988653
No 155
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.81 E-value=52 Score=30.64 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 110 ALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 110 ~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.++.+|++|+++..|+--. ...++++.+||||+|=.|+
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNE---------------PAEALALAARGVALIETDN 228 (229)
T ss_pred hhhHHHHhCCceEEEEEcCC---------------HHHHHHHHHhCCcEEEcCC
Confidence 34677999999999998652 2357889999999998775
No 156
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=39.71 E-value=61 Score=31.53 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|+.|+++.+|+--. ...++.+.+||||.|=.|+-
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND---------------EEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC---------------HHHHHHHHhcCCCEEEeCCH
Confidence 689999999999999997531 24678889999999988864
No 157
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=39.56 E-value=1.9e+02 Score=28.83 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSK 135 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~ 135 (397)
+++.+++.|..+++. |.+++ . .+=++ .|.+...++--. ..|++-|.++.++.|+.+-- +
T Consensus 105 s~e~~~~~A~~lk~~-----ga~~~-r-~~~fK-pRTsp~sf~G~g---~~gL~~L~~~~~~~Gl~v~t--e-------- 163 (335)
T PRK08673 105 SEEQILEIARAVKEA-----GAQIL-R-GGAFK-PRTSPYSFQGLG---EEGLKLLAEAREETGLPIVT--E-------- 163 (335)
T ss_pred CHHHHHHHHHHHHHh-----chhhc-c-CcEec-CCCCCccccccc---HHHHHHHHHHHHHcCCcEEE--e--------
Confidence 899999999988554 33311 1 11112 343322222111 34899999999999998641 1
Q ss_pred CCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 136 QMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 136 ~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
-+-...++.+.+. +|++|+=..... . ..+.+++-++|.|++++.
T Consensus 164 ------v~d~~~~~~l~~~-vd~lqIgAr~~~------N-~~LL~~va~~~kPViLk~ 207 (335)
T PRK08673 164 ------VMDPRDVELVAEY-VDILQIGARNMQ------N-FDLLKEVGKTNKPVLLKR 207 (335)
T ss_pred ------eCCHHHHHHHHHh-CCeEEECccccc------C-HHHHHHHHcCCCcEEEeC
Confidence 1223456666777 899998654321 0 224444455666666653
No 158
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=39.27 E-value=27 Score=31.60 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCce---EEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCC-eEEEEeeC
Q 039407 53 GNINEDIIKAAADALVSSGLAKLGYI---YVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGL-KLGIYSSA 128 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~~gl~~~Gy~---~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl-k~Giw~~p 128 (397)
+-.+.+..+++|+.+.+. ++..|+. .+.+| ++.. .. ......-++.+++.+++.|. +++||..+
T Consensus 65 ~~~~~~~a~~eA~~f~~~-~~~~~~~~~~~~~lD--~E~~---~~------~~~~~~~~~~F~~~v~~~g~~~~~iY~~~ 132 (192)
T cd06522 65 HYTSAADAQAEARYFANT-AKSLGLSKNTVMVAD--MEDS---SS------SGNATANVNAFWQTMKAAGYKNTDVYTSA 132 (192)
T ss_pred ecCChHHHHHHHHHHHHH-HHHcCCCCCCceEEE--eecC---CC------cchHHHHHHHHHHHHHHcCCCCcEEEccH
Confidence 334666777777776553 3333332 35566 3321 10 11122347899999999998 89999986
No 159
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=39.06 E-value=53 Score=31.50 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++..|+..- --...++.+.++|||.|=.|+.
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~-------------n~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLN-------------NDPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCcc-------------CCHHHHHHHHHcCCCEEEECCH
Confidence 578999999999999997410 0023567889999999998875
No 160
>PLN02905 beta-amylase
Probab=38.88 E-value=48 Score=35.71 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEE
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLG 123 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~G 123 (397)
.+.+.+.....+| |.+|++=|.+|.=|-..++...+.... +|-+.|++-+++.|||+=
T Consensus 283 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~gP~~YdW------sgY~~L~~mvr~~GLKlq 340 (702)
T PLN02905 283 ADPDGLLKQLRIL-----KSINVDGVKVDCWWGIVEAHAPQEYNW------NGYKRLFQMVRELKLKLQ 340 (702)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEE
Confidence 3456677777765 788999999997665555433222222 479999999999999964
No 161
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=38.77 E-value=48 Score=36.43 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCC-------------------------------c----cccCC----CCCCccchHHHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSAG-------------------------------Y----YTCSK----QMPGSLGYEDQD 147 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg-------------------------------~----~~c~~----~~pg~~~~~~~~ 147 (397)
.+|.|++.+|++||++-|=+..- . ..|.. .+|.++.++...
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 49999999999999965432110 0 01211 246677777766
Q ss_pred HHHH-HhcCCcEEEeeCCCCCCCC--ccchHHHHHHHHHh
Q 039407 148 AKTF-ASWGVDYLKYDNCYNDGSK--PMDRYPVMTRALMN 184 (397)
Q Consensus 148 ~~~~-~~wGvdylK~D~~~~~~~~--~~~~y~~m~~al~~ 184 (397)
++.+ ++.|||.+.+|....-... .......+.++|++
T Consensus 326 l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 326 LRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 7765 5899999999987542111 11122346666665
No 162
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=38.51 E-value=58 Score=30.78 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEee
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D 162 (397)
+.+++.+|+.|+++.+|+--. ...++.+.++|||.|=.|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~---------------~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNE---------------PWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCC---------------HHHHHHHHHcCCCEEecC
Confidence 679999999999999998642 235778899999998766
No 163
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=38.40 E-value=64 Score=29.78 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~---------------~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE---------------EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEeCCC
Confidence 689999999999999998431 2456778899999998875
No 164
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=38.02 E-value=1.2e+02 Score=33.67 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHH--cCCcccCceEEEeCCc---------cc--cCCCCCCCCeeecCCCCCCcHHHHHHHHHhC--
Q 039407 54 NINEDIIKAAADALVS--SGLAKLGYIYVNIDDC---------WG--EQDRDEKGNLQARNTTFPSGIKALADYVHGK-- 118 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg---------W~--~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~-- 118 (397)
..|+++|.+..+.+++ ...+++|++-|.|=.+ .- +...|.+|-=..|..|| +..+++.|++.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~~~ 616 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRY---PLEVFRAVRAVWP 616 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHH---HHHHHHHHHHhcC
Confidence 5899999888887754 2456789999999766 11 22346676544456677 56788888874
Q ss_pred -CCeEEEEeeCCccccCCCCCCccchH--HHHHHHHHhcCCcEEEee
Q 039407 119 -GLKLGIYSSAGYYTCSKQMPGSLGYE--DQDAKTFASWGVDYLKYD 162 (397)
Q Consensus 119 -Glk~Giw~~pg~~~c~~~~pg~~~~~--~~~~~~~~~wGvdylK~D 162 (397)
.+.+|+=+.+.. ..++..... ...++.+.+.|+|||-+-
T Consensus 617 ~~~~v~~ri~~~~-----~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 617 AEKPMSVRISAHD-----WVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred CCCeeEEEEcccc-----ccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 466777666532 113322222 356677889999999775
No 165
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=38.00 E-value=63 Score=29.59 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|++|+++.+|+--. ...++.+.++|+|+|=.|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~---------------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVND---------------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCC---------------HHHHHHHHHcCCCEEeCCC
Confidence 688999999999999996421 1346778899999998775
No 166
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.85 E-value=95 Score=29.42 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccch----HHHHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDR----YPVMTRALM 183 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~----y~~m~~al~ 183 (397)
++.+..++|+.|++ |+++-+- - + -.-+..+++.-+|+||+|-........... .+.+....+
T Consensus 138 ~~~~l~~L~~~G~~--ialDDFG-------t---G--~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~ 203 (256)
T COG2200 138 ALALLRQLRELGVR--IALDDFG-------T---G--YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAH 203 (256)
T ss_pred HHHHHHHHHHCCCe--EEEECCC-------C---C--HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHH
Confidence 67788889999855 4444321 0 0 123567889999999999976543322222 223444445
Q ss_pred hcCCCeEEEecC
Q 039407 184 NTGRPIYYSLCE 195 (397)
Q Consensus 184 ~~g~~i~~~~c~ 195 (397)
+.|-.++.+.++
T Consensus 204 ~l~~~vvaEGVE 215 (256)
T COG2200 204 KLGLTVVAEGVE 215 (256)
T ss_pred HCCCEEEEeecC
Confidence 677777777544
No 167
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.83 E-value=74 Score=29.77 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.1
Q ss_pred eeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCc
Q 039407 97 LQARNTTFPSGIKALADYVHGKGLKLGIYSSAGY 130 (397)
Q Consensus 97 ~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~ 130 (397)
+....+.-|. +..+.++||+.|.|+||=+.|++
T Consensus 88 It~H~E~~~~-~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 88 ITFHAEATEH-IHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred EEEEeccCcC-HHHHHHHHHHcCCeEEEEECCCC
Confidence 3445555555 89999999999999999999986
No 168
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=37.81 E-value=1.2e+02 Score=29.78 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEeCCc-cccCCCCCCCCeeecCCCCCCcHHHHHHHHHh--CCCeEEEEeeCCcc
Q 039407 57 EDIIKAAADALVS--SGLAKLGYIYVNIDDC-WGEQDRDEKGNLQARNTTFPSGIKALADYVHG--KGLKLGIYSSAGYY 131 (397)
Q Consensus 57 e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg-W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~--~Glk~Giw~~pg~~ 131 (397)
++.+.+.|+++.+ .-|.++|..+|+||+- |... .+.. .. +..-.-++.+.+.+++ .+++.+++++.|..
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~-~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~ 220 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALAEG-LPLE----PD-DLAADYLKWANEALADRPDDTQIHTHICYGNF 220 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhcc-CCcc----cH-HHHHHHHHHHHHHHHhCCCCCEEEEEEECCCC
Confidence 4455555555433 2467789999999986 3321 1110 00 0000125666777775 25788888876642
Q ss_pred ccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 132 TCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 132 ~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
..... ..+-+...+..+.+-++|.+-+|+...
T Consensus 221 ~~~~~---~~~~y~~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 221 RSTWA---AEGGYEPIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred ccccc---ccCcHHHHHHHHHhCCCCEEEEEEcCC
Confidence 21111 122335567778888899999999754
No 169
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=37.62 E-value=69 Score=29.61 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++.+|+... ...++.+.++|||+|=.|+-
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~---------------~~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDD---------------AEDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCCC
Confidence 689999999999999998542 13567788999999988864
No 170
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=37.39 E-value=66 Score=32.05 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHH--cCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccc-
Q 039407 56 NEDIIKAAADALVS--SGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYT- 132 (397)
Q Consensus 56 ~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~- 132 (397)
.++.+.+.|+++.+ ..|.++|.+||||||.-.... ++. .-.-+.+.+-.-+....++.+++++.|...
T Consensus 147 ~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~--------~~~-~~~~~v~~~n~~~~g~~~~v~~HvC~G~~~~ 217 (339)
T PRK09121 147 REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF--------FDE-VNDWGVAALERAIEGLKCETAVHICYGYGIK 217 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhh--------hHH-HHHHHHHHHHHHHcCCCCceEEEEeCCCCCC
Confidence 36667777776644 247889999999998754310 000 000122333333444556777777766311
Q ss_pred --cCCCCC-Cc-cchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 133 --CSKQMP-GS-LGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 133 --c~~~~p-g~-~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
.....+ |+ .+-++..+..+.+..||.+=++|-.
T Consensus 218 ~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 254 (339)
T PRK09121 218 ANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHN 254 (339)
T ss_pred CccccccccccccccHHHHHHHHHhCCCCEEEEEecC
Confidence 000001 00 0345566777899999999999864
No 171
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=37.29 E-value=78 Score=27.66 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|+.|+++..|+-.. ...++.+.++|||+|=.|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~---------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND---------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC---------------HHHHHHHHHCCCCEEecCC
Confidence 788999999999999997531 4467778899999997774
No 172
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=37.27 E-value=80 Score=28.89 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~---------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND---------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---------------HHHHHHHHHCCCCEEEcCC
Confidence 679999999999999996421 2457788899999998885
No 173
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=36.80 E-value=1.5e+02 Score=29.24 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCC----cHHHHHHHHHhCCCeEEEEe
Q 039407 51 FWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPS----GIKALADYVHGKGLKLGIYS 126 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~----Gl~~l~~~i~~~Glk~Giw~ 126 (397)
|+.--|.++=++.+++|.+.++.. |-|-==||-+-.. +|. +.+|. -|+.|++..++.|++|+.=+
T Consensus 8 YG~PWs~e~R~~l~~f~~~~kmN~--YiYAPKdDpyhr~------~Wr---e~Yp~~el~~l~~L~~~a~~~~V~Fv~ai 76 (306)
T PF07555_consen 8 YGRPWSHEDRLDLIRFLGRYKMNT--YIYAPKDDPYHRS------KWR---EPYPEEELAELKELADAAKANGVDFVYAI 76 (306)
T ss_dssp SSS---HHHHHHHHHHHHHTT--E--EEE--TT-TTTTT------TTT---S---HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCce--EEECCCCChHHHh------hhc---ccCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 344578888899999986655543 2333334433221 221 33443 48999999999999999999
Q ss_pred eCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 127 SAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 127 ~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
.||...|.. .+....-+..-++++.+.||+.|=+=|=..
T Consensus 77 sPg~~~~~s-~~~d~~~L~~K~~ql~~lGvr~FailfDDi 115 (306)
T PF07555_consen 77 SPGLDICYS-SEEDFEALKAKFDQLYDLGVRSFAILFDDI 115 (306)
T ss_dssp BGTTT--TS-HHHHHHHHHHHHHHHHCTT--EEEEE-TS-
T ss_pred CcccccccC-cHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Confidence 999876632 133334445566778899999998877443
No 174
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=36.79 E-value=21 Score=34.70 Aligned_cols=135 Identities=12% Similarity=0.159 Sum_probs=64.5
Q ss_pred ceEEechhhhccCCCHHHHHHHHHHHHHcCCcccCceEEEe-----CCccccCCCCCCCCee-------------ecCCC
Q 039407 42 AMGWNSWNHFWGNINEDIIKAAADALVSSGLAKLGYIYVNI-----DDCWGEQDRDEKGNLQ-------------ARNTT 103 (397)
Q Consensus 42 p~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~i-----DdgW~~~~rd~~G~~~-------------~~~~~ 103 (397)
++| .|.+....+.+.++++..++..++ .|++.|++ .+++... +.+|... +|++=
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r~~-----qgFN~iq~~~l~~~~~~~~~--n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTRKE-----QGFNVIQMNVLPQWDGYNTP--NRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHHHH-----TT--EEEEES-SSSS-B------TTS-BS-SSTT------TT----H
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHHHH-----CCCCEEEEEeCCCccccccc--ccCCCcCCCCCCccccCCCCCCHHH
Confidence 566 444455567888888888888744 55666665 3344221 1122211 33333
Q ss_pred CCCcHHHHHHHHHhCCCeEEEEeeCCccc---cCCCCCC------ccchHHHHHHHHHhc-CCcEE-EeeCCCCCCCCcc
Q 039407 104 FPSGIKALADYVHGKGLKLGIYSSAGYYT---CSKQMPG------SLGYEDQDAKTFASW-GVDYL-KYDNCYNDGSKPM 172 (397)
Q Consensus 104 FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~---c~~~~pg------~~~~~~~~~~~~~~w-Gvdyl-K~D~~~~~~~~~~ 172 (397)
|=. +..+++++.++||.+.|=..-+..- .-+..+. .+.|.+-++++|++. .|=++ --|. .......
T Consensus 87 F~~-~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~--~~~~~~~ 163 (289)
T PF13204_consen 87 FDH-LDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY--FDTEKTR 163 (289)
T ss_dssp HHH-HHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS----TTSSH
T ss_pred HHH-HHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc--CCCCcCH
Confidence 333 7889999999999998532211111 0011111 245667777888776 44332 1122 1223456
Q ss_pred chHHHHHHHHHhcCC
Q 039407 173 DRYPVMTRALMNTGR 187 (397)
Q Consensus 173 ~~y~~m~~al~~~g~ 187 (397)
+.+++|.+.|++..+
T Consensus 164 ~~w~~~~~~i~~~dp 178 (289)
T PF13204_consen 164 ADWDAMARGIKENDP 178 (289)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhCC
Confidence 778888888876543
No 175
>PLN02411 12-oxophytodienoate reductase
Probab=36.71 E-value=1.3e+02 Score=30.50 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=50.1
Q ss_pred cCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCc--c------c---cCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-
Q 039407 53 GNINEDIIKAAADALVS--SGLAKLGYIYVNIDDC--W------G---EQDRDEKGNLQARNTTFPSGIKALADYVHGK- 118 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg--W------~---~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~- 118 (397)
...|+++|.+.++.+++ ...+++|++-|.|=.+ | . +...|.+|-=..|..|| +..+++.|++.
T Consensus 153 r~mt~~eI~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF---~lEIi~aVr~~v 229 (391)
T PLN02411 153 RALETSEIPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRF---LMQVVQAVVSAI 229 (391)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHHc
Confidence 35899999999887754 3467799999988644 2 1 12246676545577788 67788888775
Q ss_pred CC-eEEEEeeCC
Q 039407 119 GL-KLGIYSSAG 129 (397)
Q Consensus 119 Gl-k~Giw~~pg 129 (397)
|- .+|+=++|.
T Consensus 230 g~d~vgvRiS~~ 241 (391)
T PLN02411 230 GADRVGVRVSPA 241 (391)
T ss_pred CCCeEEEEEccc
Confidence 32 367777764
No 176
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=36.59 E-value=50 Score=32.11 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEEeeCCCCCCCC--ccchHHHHHHHHHhcCCCeEEEecC
Q 039407 145 DQDAKTFASWGVDYLKYDNCYNDGSK--PMDRYPVMTRALMNTGRPIYYSLCE 195 (397)
Q Consensus 145 ~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m~~al~~~g~~i~~~~c~ 195 (397)
+..++.+++||+|||-+--...+..+ +...+..--+.|+.-.+.|+++ |-
T Consensus 145 eNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~L 196 (360)
T KOG2672|consen 145 ENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-CL 196 (360)
T ss_pred ccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-hc
Confidence 57788999999999999887775442 2334444445555556778777 63
No 177
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=35.96 E-value=1.3e+02 Score=29.19 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=44.0
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHh-CCCeEEEEeeCCccccCCCCCCccchHHHHHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHG-KGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKT 150 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~-~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~ 150 (397)
|+++|..+|+|||--...... + .....| -++.+.+.+++ .|..++|++ |.. .....
T Consensus 160 l~~~G~~~iqidEP~l~~~~~--s----~~~~~~-~~~~~~~~~~~~~~~~~~lHi------c~~----------~~~~~ 216 (321)
T cd03310 160 LKNRGIVVVQIDEPSLGAVGA--G----AFEDLE-IVDAALEEVSLKSGGDVEVHL------CAP----------LDYEA 216 (321)
T ss_pred HHhcCCcEEEeCCCccccccc--c----ccchHH-HHHHHHHHHhhccCCceEEEE------CCC----------CCHHH
Confidence 677899999999864432110 1 000111 25667777775 344555554 432 23456
Q ss_pred HHhcCCcEEEeeCCCC
Q 039407 151 FASWGVDYLKYDNCYN 166 (397)
Q Consensus 151 ~~~wGvdylK~D~~~~ 166 (397)
+.+.|+|.|-+|++..
T Consensus 217 l~~~~vd~l~~D~~~~ 232 (321)
T cd03310 217 LLELGVDVIGFDAAAL 232 (321)
T ss_pred HHhCCCCEEEEecccC
Confidence 7788999999999865
No 178
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=35.78 E-value=37 Score=34.61 Aligned_cols=55 Identities=29% Similarity=0.406 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEE
Q 039407 59 IIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 59 ~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi 124 (397)
.+....++| |.+|++=|.+|-=|-..++...+.... +|-+.|++.|++.|||+=.
T Consensus 17 ~~~~~L~~L-----K~~GV~GVmvdvWWGiVE~~~p~~ydW------s~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 17 ALEAQLRAL-----KSAGVDGVMVDVWWGIVEGEGPQQYDW------SGYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp HHHHHHHHH-----HHTTEEEEEEEEEHHHHTGSSTTB---------HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHH-----HHcCCcEEEEEeEeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEEE
Confidence 566666765 788999999987676555443333222 3799999999999999643
No 179
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.58 E-value=1.1e+02 Score=30.40 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 106 SGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 106 ~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
.+++.|.++.++.|+.|- ++| |-...++.+.+.|++.+|+=-..
T Consensus 76 e~~~~L~~~~~~~Gi~~~--stp--------------fd~~svd~l~~~~v~~~KIaS~~ 119 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFL--STP--------------FDLESADFLEDLGVPRFKIPSGE 119 (329)
T ss_pred HHHHHHHHHHHHhCCcEE--EEe--------------CCHHHHHHHHhcCCCEEEECccc
Confidence 368999999999999863 233 23445677889999999996653
No 180
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=35.23 E-value=74 Score=31.44 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
+.+++.+|+.|+++.+|+--. ...++.+.+||||.|=.|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd---------------~~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINE---------------PWLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCC---------------HHHHHHHHhCCcCEEEeCCHH
Confidence 688999999999999998642 245788899999999999864
No 181
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=35.10 E-value=73 Score=28.34 Aligned_cols=68 Identities=21% Similarity=0.491 Sum_probs=38.4
Q ss_pred ceEEEeCCccccCCCCCCCCeeecCCCCCC----cHHHH-HHHHHhCCCeEEEEeeCCccccCCCCCCccchHHH-HHHH
Q 039407 77 YIYVNIDDCWGEQDRDEKGNLQARNTTFPS----GIKAL-ADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQ-DAKT 150 (397)
Q Consensus 77 y~~i~iDdgW~~~~rd~~G~~~~~~~~FP~----Gl~~l-~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~-~~~~ 150 (397)
|+.|.+|==|........| .-...++. -|+.| +..|-..|--+.||++.. +... ..+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~---~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~-------------~~~~~~~~l 64 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG---GAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS-------------QLPEAKLEL 64 (176)
T ss_pred CCEEEEeCCCCCcCccccc---ccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc-------------hhhHHHHHH
Confidence 6789999999865321111 01123332 12222 334445566677888752 2222 4778
Q ss_pred HHhcCCcEEE
Q 039407 151 FASWGVDYLK 160 (397)
Q Consensus 151 ~~~wGvdylK 160 (397)
|..|||+|+-
T Consensus 65 ~~~WGf~~~~ 74 (176)
T PF05063_consen 65 FPAWGFEYVT 74 (176)
T ss_pred HHhCCCEEEE
Confidence 9999999953
No 182
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.93 E-value=1.1e+02 Score=30.37 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH--cCCcccCceEEEeCCc-----------cccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC---
Q 039407 55 INEDIIKAAADALVS--SGLAKLGYIYVNIDDC-----------WGEQDRDEKGNLQARNTTFPSGIKALADYVHGK--- 118 (397)
Q Consensus 55 i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg-----------W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~--- 118 (397)
.|+++|.+.++.+++ ...+.+||+-|.|=.+ -.+...|.+|-=.-|..|| +..+++.|++.
T Consensus 139 mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf---~~EiI~aIR~avG~ 215 (338)
T cd04733 139 MTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARL---LLEIYDAIRAAVGP 215 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHH---HHHHHHHHHHHcCC
Q ss_pred CCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEE
Q 039407 119 GLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYL 159 (397)
Q Consensus 119 Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdyl 159 (397)
++.+++=+++....-.+. +.+-....++.+.+.|+|||
T Consensus 216 d~~v~vris~~~~~~~g~---~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 216 GFPVGIKLNSADFQRGGF---TEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred CCeEEEEEcHHHcCCCCC---CHHHHHHHHHHHHHcCCCEE
No 183
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=34.09 E-value=3.3e+02 Score=26.49 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=52.6
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCCcccc-CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCC--ccchHHHHHHHHH
Q 039407 107 GIKALADYVHGKGLKLGIYSSAGYYTC-SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSK--PMDRYPVMTRALM 183 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg~~~c-~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m~~al~ 183 (397)
.+..-+..++++|.|+-|-+.-..... .........+.+.+.+.+..+|+|.|-+|.-+....+ ..++..+..+.|+
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 367778899999999877664321110 0011223455566667789999999999997653222 1233444445555
Q ss_pred hcCCCeEEEec
Q 039407 184 NTGRPIYYSLC 194 (397)
Q Consensus 184 ~~g~~i~~~~c 194 (397)
+.-+++.++..
T Consensus 135 ~~~p~l~vs~T 145 (294)
T cd06543 135 KEYPDLKISFT 145 (294)
T ss_pred HHCCCcEEEEe
Confidence 55566666643
No 184
>PRK06769 hypothetical protein; Validated
Probab=34.05 E-value=69 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEeeC
Q 039407 103 TFPSGIKALADYVHGKGLKLGIYSSA 128 (397)
Q Consensus 103 ~FP~Gl~~l~~~i~~~Glk~Giw~~p 128 (397)
-|| |++.+.+++|++|++++|=++-
T Consensus 29 ~~p-gv~e~L~~Lk~~G~~l~I~Tn~ 53 (173)
T PRK06769 29 LFP-FTKASLQKLKANHIKIFSFTNQ 53 (173)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEECC
Confidence 466 4999999999999999988764
No 185
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=33.96 E-value=3.8e+02 Score=25.26 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-CCeEEEEeeCCccccCCC
Q 039407 58 DIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGK-GLKLGIYSSAGYYTCSKQ 136 (397)
Q Consensus 58 ~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c~~~ 136 (397)
..+.+..+.+ +++||++|.|+-+.... ...+. .=+..++.+.+.+.+. |+.+.+........+..
T Consensus 10 ~~l~~~l~~a-----~~~G~d~vEl~~~~~~~------~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~- 75 (279)
T cd00019 10 FGLENALKRA-----KEIGFDTVAMFLGNPRS------WLSRP--LKKERAEKFKAIAEEGPSICLSVHAPYLINLASP- 75 (279)
T ss_pred ccHHHHHHHH-----HHcCCCEEEEEcCCCCc------cCCCC--CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCC-
Confidence 3445556654 67889999886433210 00000 0123588999999998 77776542211111111
Q ss_pred CCC----ccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHH-------hcCCCeEEEecC
Q 039407 137 MPG----SLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALM-------NTGRPIYYSLCE 195 (397)
Q Consensus 137 ~pg----~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~-------~~g~~i~~~~c~ 195 (397)
.|. +..+++..++.-++.|.+++-+-.-........+.+..+.+.++ +.|-.+.++.+.
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 122 23445666677789999998774432222223344444444433 345456666543
No 186
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.82 E-value=1.8e+02 Score=26.12 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=56.1
Q ss_pred cccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHH
Q 039407 73 AKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFA 152 (397)
Q Consensus 73 ~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~ 152 (397)
+..|++++.|-. .+. .|. .|| -+..-.+.+++.||+.|+|+-+-...|. ...+-.+..++.++
T Consensus 19 k~~g~~fv~ika-teg-----~~~--~D~-----~f~~n~~~A~~aGl~~G~Yhf~~~~~~~----~~~~Qa~~f~~~~~ 81 (196)
T cd06416 19 KNNGYSFAIIRA-YRS-----NGS--FDP-----NSVTNIKNARAAGLSTDVYFFPCINCCG----SAAGQVQTFLQYLK 81 (196)
T ss_pred HhCCceEEEEEE-Ecc-----CCc--cCh-----HHHHHHHHHHHcCCccceEEEecCCCCC----CHHHHHHHHHHHHH
Confidence 556888888853 221 121 342 2677888999999999999876321111 11223344556667
Q ss_pred hcCCc--EEEeeCCCCCC---CC---ccchHHHHHHHHHhcCCCeEEE
Q 039407 153 SWGVD--YLKYDNCYNDG---SK---PMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 153 ~wGvd--ylK~D~~~~~~---~~---~~~~y~~m~~al~~~g~~i~~~ 192 (397)
..+.+ .|-+|.-.... .+ ..+..+.+.+.+++.|....+-
T Consensus 82 ~~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iY 129 (196)
T cd06416 82 ANGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIY 129 (196)
T ss_pred hCCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 66654 34566543211 11 1123344666677678644433
No 187
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=33.72 E-value=1.6e+02 Score=29.06 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=53.6
Q ss_pred CceEEEeCCccccCCCCCCCCeeecCCC-----CCCcHHHHHHHHHhCC-CeEEEEeeCCccccCCCCCCccchHHHHHH
Q 039407 76 GYIYVNIDDCWGEQDRDEKGNLQARNTT-----FPSGIKALADYVHGKG-LKLGIYSSAGYYTCSKQMPGSLGYEDQDAK 149 (397)
Q Consensus 76 Gy~~i~iDdgW~~~~rd~~G~~~~~~~~-----FP~Gl~~l~~~i~~~G-lk~Giw~~pg~~~c~~~~pg~~~~~~~~~~ 149 (397)
|.+.|+|=|-|... .|.+ ..++- +|- ++.+++.+|++| ..+.++ .|+ .....+.
T Consensus 169 Gad~I~i~Ddwa~~----~~~~-LSpe~f~efv~P~-~krIi~~ik~~~g~piilH------~cG--------~~~~~l~ 228 (321)
T cd03309 169 EPDLLVYHDDLGSQ----KGSF-ISPATFREFILPR-MQRIFDFLRSNTSALIVHH------SCG--------AAASLVP 228 (321)
T ss_pred CCCEEEEeCCCccc----cCCc-cCHHHHHHHHHHH-HHHHHHHHHhccCCceEEE------eCC--------CcHHHHH
Confidence 89999997767542 1222 12233 243 799999999984 333333 232 2234577
Q ss_pred HHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 150 TFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 150 ~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
.+++.|+|-+-+|+... .+.++.+..|..+.+.
T Consensus 229 ~~~e~g~dvl~~d~~~~----------dl~eak~~~g~k~~l~ 261 (321)
T cd03309 229 SMAEMGVDSWNVVMTAN----------NTAELRRLLGDKVVLA 261 (321)
T ss_pred HHHHcCCCEEEecCCCC----------CHHHHHHHhCCCeEEE
Confidence 78889999999998751 1455556666655443
No 188
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=33.38 E-value=73 Score=30.56 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCC-ccchHHHHHHHHHhcCCcEEEeeCCCCC-----CCCc-cchHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPG-SLGYEDQDAKTFASWGVDYLKYDNCYND-----GSKP-MDRYPVMTR 180 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-----~~~~-~~~y~~m~~ 180 (397)
++.-+..+.++|--+-|-+.--..+.. -+.| -+++..+.++++++||||.|-+|--... ..+. ....+.+++
T Consensus 87 Fr~~v~aLnaeGkavllsLGGAdghIe-L~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~ 165 (332)
T COG3469 87 FRAQVGALNAEGKAVLLSLGGADGHIE-LKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKD 165 (332)
T ss_pred HHHHHHHhhccCcEEEEEccCccceEE-eccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHH
Confidence 677777788888665544322100000 0111 3467788999999999999999985432 1212 234455666
Q ss_pred HHHhcCCCeEEEec
Q 039407 181 ALMNTGRPIYYSLC 194 (397)
Q Consensus 181 al~~~g~~i~~~~c 194 (397)
..++.|..+++.+.
T Consensus 166 hyk~~Gk~f~itMA 179 (332)
T COG3469 166 HYKNQGKNFFITMA 179 (332)
T ss_pred HHHhcCCceEEEec
Confidence 67789999988753
No 189
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=33.37 E-value=77 Score=31.26 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|+.|+++..|+--. ...++++.++|||+|=.|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd---------------~~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNE---------------PWLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCC---------------HHHHHHHHhcCCCEEEcCCH
Confidence 678999999999999998642 34688899999999999884
No 190
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.19 E-value=83 Score=29.49 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~---------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND---------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC---------------HHHHHHHHHcCCCEEEcCCC
Confidence 578999999999999997521 13567788999999988863
No 191
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=32.71 E-value=1.6e+02 Score=27.96 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCcc---ccCCCCCC-ccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYY---TCSKQMPG-SLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALM 183 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~---~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~ 183 (397)
+..=+..++++|+|+-|-+.-... .+.-..+. ...|+....+.++++|||.|-+|+-+... ...|..+.++|+
T Consensus 61 ~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr 137 (256)
T cd06546 61 LWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLR 137 (256)
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHH
Confidence 444455788999998775532110 01000011 22455666777889999999999986532 246777777776
Q ss_pred h-cCCCeEEEe
Q 039407 184 N-TGRPIYYSL 193 (397)
Q Consensus 184 ~-~g~~i~~~~ 193 (397)
+ .++..++..
T Consensus 138 ~~~~~~~~lT~ 148 (256)
T cd06546 138 SDFGPDFIITL 148 (256)
T ss_pred HHhCCCcEEEE
Confidence 4 355555554
No 192
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.33 E-value=95 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+++++|+.|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~---------------~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVND---------------PAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHhcCCCEEEcCCH
Confidence 689999999999999998531 25677889999999988863
No 193
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=31.98 E-value=2.2e+02 Score=28.51 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC 133 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 133 (397)
.++.+.+++.++.+. +.|...|.+= . |+... -|+ +..++++++++|+.+.|-++.
T Consensus 45 ~~~~e~~~~ii~~~~-----~~g~~~v~~~----G------GEPll----~~~-~~~il~~~~~~g~~~~i~TNG----- 99 (378)
T PRK05301 45 ELSTEEWIRVLREAR-----ALGALQLHFS----G------GEPLL----RKD-LEELVAHARELGLYTNLITSG----- 99 (378)
T ss_pred CCCHHHHHHHHHHHH-----HcCCcEEEEE----C------CccCC----chh-HHHHHHHHHHcCCcEEEECCC-----
Confidence 477888888888764 3455555542 1 33332 345 889999999999887654432
Q ss_pred CCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 134 SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 134 ~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
.. .-+..++.+++.|++.|.+..-.
T Consensus 100 ------~l-l~~~~~~~L~~~g~~~v~iSldg 124 (378)
T PRK05301 100 ------VG-LTEARLAALKDAGLDHIQLSFQD 124 (378)
T ss_pred ------cc-CCHHHHHHHHHcCCCEEEEEecC
Confidence 11 11345678899999988766543
No 194
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=31.75 E-value=89 Score=29.65 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHh-cCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFAS-WGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~-wGvdylK~D~ 163 (397)
+.+++.+|+.|+++.+|+--. ...++.+.+ |||| +=.|.
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~---------------~~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNT---------------PTEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHHhCCC-eecCC
Confidence 678999999999999998642 235777888 9999 76765
No 195
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.67 E-value=2.6e+02 Score=28.18 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCC-CCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDE-KGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~-~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
+++.+++.|+.+. +.|.+++- .|-++ .|.+ ++..-+. -.|++-|.+..++.|+.+- +++
T Consensus 113 s~eq~l~~A~~lk-----~~g~~~~r--~g~~k-pRtsp~sf~G~g----~~gl~~L~~~~~e~Gl~~~--tev------ 172 (352)
T PRK13396 113 NEEMIVETAKRVK-----AAGAKFLR--GGAYK-PRTSPYAFQGHG----ESALELLAAAREATGLGII--TEV------ 172 (352)
T ss_pred CHHHHHHHHHHHH-----HcCCCEEE--eeeec-CCCCCcccCCch----HHHHHHHHHHHHHcCCcEE--Eee------
Confidence 7899999999874 44555532 33333 2332 2111111 1378999999999998863 222
Q ss_pred CCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 135 KQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 135 ~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
|-...++.+.+. +|++|+=..
T Consensus 173 --------~d~~~v~~~~~~-~d~lqIga~ 193 (352)
T PRK13396 173 --------MDAADLEKIAEV-ADVIQVGAR 193 (352)
T ss_pred --------CCHHHHHHHHhh-CCeEEECcc
Confidence 233455666777 899998664
No 196
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=31.57 E-value=1.4e+02 Score=29.13 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCeEEEEeeCCccccCCCCCCcc--chHHHHHHHHHhcCCcEEEeeCCC
Q 039407 110 ALADYVHGKGLKLGIYSSAGYYTCSKQMPGSL--GYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 110 ~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~--~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
.+++.+|+.|+++-+|+--.... .-+..+ ...+...+.+.++|||+|=.|+-.
T Consensus 241 ~~v~~a~~~Gl~v~vwTvn~~~~---~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 241 NVVEKLQSANLTVYVEVLRNEFV---SLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred HHHHHHHHCCCEEEEEEecCCcc---ccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 79999999999999998642100 001111 122445667889999999999753
No 197
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.24 E-value=3.1e+02 Score=27.07 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC 133 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 133 (397)
.++.+.+++.++.+. +.|...|.+- . |+... -|+ +..++++++++|+++.|-++. .
T Consensus 36 ~l~~e~~~~ii~~~~-----~~g~~~v~~~----G------GEPll----~~~-~~~ii~~~~~~g~~~~l~TNG-~--- 91 (358)
T TIGR02109 36 ELTTEEWTDVLTQAA-----ELGVLQLHFS----G------GEPLA----RPD-LVELVAHARRLGLYTNLITSG-V--- 91 (358)
T ss_pred CCCHHHHHHHHHHHH-----hcCCcEEEEe----C------ccccc----ccc-HHHHHHHHHHcCCeEEEEeCC-c---
Confidence 477888888888764 4455666652 1 34333 344 889999999999988775442 1
Q ss_pred CCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 134 SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 134 ~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
. .-+..++.+++.|++.|.+..-.
T Consensus 92 -------l-l~~e~~~~L~~~g~~~v~iSldg 115 (358)
T TIGR02109 92 -------G-LTEARLDALADAGLDHVQLSFQG 115 (358)
T ss_pred -------c-CCHHHHHHHHhCCCCEEEEeCcC
Confidence 0 11356777889999988766543
No 198
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=30.62 E-value=1.3e+02 Score=29.51 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCc-cchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGS-LGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~-~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|+.|+++-.|+--... . ..|.. ..-....++.+.++|||+|=.|+
T Consensus 256 ~~~v~~a~~~gl~v~~wTvn~~~--~-~~~~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 256 TDLVEDAHAAGLQVHPYTFRNEN--T-FLPPDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred cHHHHHHHHcCCEEEEEEecCCC--c-ccCcccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 48899999999999999864210 0 00111 11123456777789999998775
No 199
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.51 E-value=1.3e+02 Score=27.13 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCcc----chHHHHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPM----DRYPVMTRALM 183 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~----~~y~~m~~al~ 183 (397)
+....+.+++.|+++.| +-+ +.-...+..+....+||||+|.......... ...+.+....+
T Consensus 135 ~~~~i~~l~~~G~~ial--ddf------------g~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 200 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DDF------------GTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ 200 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eCC------------CCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH
Confidence 45778888888887643 321 0111235677888999999998644222111 22333444445
Q ss_pred hcCCCeEEEe
Q 039407 184 NTGRPIYYSL 193 (397)
Q Consensus 184 ~~g~~i~~~~ 193 (397)
..|-.++.+.
T Consensus 201 ~~~~~via~g 210 (241)
T smart00052 201 KLGLQVVAEG 210 (241)
T ss_pred HCCCeEEEec
Confidence 6677777663
No 200
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.41 E-value=1.1e+02 Score=27.74 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCc----cchHHHHHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKP----MDRYPVMTRALM 183 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~----~~~y~~m~~al~ 183 (397)
++.+.+.+++.|++++| +-+ +.-...++.+.++.+||||+|......... ....+.+....+
T Consensus 134 ~~~~~~~l~~~G~~l~l--d~~------------g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 134 ALATLRRLRALGVRIAL--DDF------------GTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHCCCeEEE--eCC------------CCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 78889999999998775 211 112234567889999999999854322211 122233444445
Q ss_pred hcCCCeEEEec
Q 039407 184 NTGRPIYYSLC 194 (397)
Q Consensus 184 ~~g~~i~~~~c 194 (397)
..|-+++.+..
T Consensus 200 ~~~~~via~gV 210 (240)
T cd01948 200 SLGLKVVAEGV 210 (240)
T ss_pred HCCCeEEEEec
Confidence 56767777644
No 201
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=30.37 E-value=2.1e+02 Score=30.12 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred hhHHhhhcChhhhhhccCCC-CC-ceEEeeec----C-CeeEEEEEcCCCCEEEEEEEcCCCceEEEEeccccCCCCCCe
Q 039407 287 DDTLEIVGNKEVIAVNQDPL-GI-QAKKVRWE----G-DQEVWAAPLSGYRIALLLVNRGPWRYAVTAKWEDIGIPPNSV 359 (397)
Q Consensus 287 ~~~~~ll~N~~liainqd~l-g~-~~~~v~~~----~-~~~vw~~~l~~g~~~va~fN~~~~~~~~~i~l~~lGl~~~~~ 359 (397)
.+..++.++++.-++-|-.. -. -+++|... + +.++-+=...||+.+|+++|.++++++++|.+.+
T Consensus 402 ~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~-------- 473 (496)
T PF02055_consen 402 SDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKD-------- 473 (496)
T ss_dssp GGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEEC--------
T ss_pred cCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEec--------
Confidence 33445666777655544210 01 14455421 1 3445444457899999999999888876665432
Q ss_pred eEEEEcCCCcccceeeeeeEEEEEcCCcEEEE
Q 039407 360 VEARDLWEHKTLTKQFVGNLSAMVGSHACKMY 391 (397)
Q Consensus 360 ~~v~DlWsg~~~~g~~~g~~~~~L~ph~~~ll 391 (397)
-..+ ...|.++||||++.=+
T Consensus 474 -----~~~~-------~~~~~~~lp~~s~~t~ 493 (496)
T PF02055_consen 474 -----GSKG-------NNHFNVTLPPRSIVTT 493 (496)
T ss_dssp -----TTTE-------E--EEEEEE-TTEEEE
T ss_pred -----CCcc-------eeEEEEEeCCCceEEE
Confidence 1111 1246789999987644
No 202
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=30.13 E-value=3.1e+02 Score=22.52 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 113 DYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 113 ~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
..|++.|+|-=|-..|-.. .|+ +...+...+..++.|+.|+-+=.... ....+....+.++|+....|++.-
T Consensus 21 ~~la~~GfktVInlRpd~E-----~~~-qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 21 AQLAAQGFKTVINLRPDGE-----EPG-QPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFADALESLPKPVLAH 92 (110)
T ss_dssp HHHHHCT--EEEE-S-TTS-----TTT--T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHCCCcEEEECCCCCC-----CCC-CCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4688899997766665211 011 22233344567899999976655542 234567788999999888888765
Q ss_pred ecCCC
Q 039407 193 LCEWG 197 (397)
Q Consensus 193 ~c~~g 197 (397)
|..|
T Consensus 93 -C~sG 96 (110)
T PF04273_consen 93 -CRSG 96 (110)
T ss_dssp --SCS
T ss_pred -CCCC
Confidence 9765
No 203
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=30.09 E-value=1.4e+02 Score=36.31 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=49.8
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCC----CC--CCcHHHHHHHHHhCCCeEEE
Q 039407 51 FWGNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNT----TF--PSGIKALADYVHGKGLKLGI 124 (397)
Q Consensus 51 ~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~----~F--P~Gl~~l~~~i~~~Glk~Gi 124 (397)
+....+-+.+.+.++.+ +++|++.|-|=--++.......|+...|.. .| .++++.|++.+|++||++-+
T Consensus 751 ~~~~~tf~~~~~~l~Yl-----~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vil 825 (1693)
T PRK14507 751 FHKDFTFADAEAILPYL-----AALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLL 825 (1693)
T ss_pred eCCCCCHHHHHHHhHHH-----HHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 33467888999999987 778888888866665322222344443322 22 12589999999999999877
Q ss_pred EeeC
Q 039407 125 YSSA 128 (397)
Q Consensus 125 w~~p 128 (397)
=+.|
T Consensus 826 DiV~ 829 (1693)
T PRK14507 826 DIVP 829 (1693)
T ss_pred Eecc
Confidence 6655
No 204
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.06 E-value=1.5e+02 Score=29.74 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEee---------CCcc-ccCCCCCCccchHHHHHHH-HHhcCCcEEEeeCCCC
Q 039407 108 IKALADYVHGKGLKLGIYSS---------AGYY-TCSKQMPGSLGYEDQDAKT-FASWGVDYLKYDNCYN 166 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~---------pg~~-~c~~~~pg~~~~~~~~~~~-~~~wGvdylK~D~~~~ 166 (397)
.+.+++.+|+.||++-.|+- |+.. .+....+-..+-+...++. +.+.|||.|=.||-..
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~ 349 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPAT 349 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCc
Confidence 46899999999999999986 2111 1111111112233334443 4599999999998653
No 205
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=30.02 E-value=3.2e+02 Score=27.05 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=61.6
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCcccCceEEEeC--CccccCCCCCCCCeeecCCCCCC-------cHHHHHHHHHhCC
Q 039407 49 NHFWGNINEDIIKAAADALVSSGLAKLGYIYVNID--DCWGEQDRDEKGNLQARNTTFPS-------GIKALADYVHGKG 119 (397)
Q Consensus 49 ~~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iD--dgW~~~~rd~~G~~~~~~~~FP~-------Gl~~l~~~i~~~G 119 (397)
+.+..++.....++....-.+ .+.+.||+=|-+| |+|+....+ ...||. .++.|++++|+++
T Consensus 134 g~~~vd~~~~~W~~il~~rl~-~l~~kGfDGvfLD~lDsy~~~~~~--------~~~~~~~~~~m~~~i~~Ia~~ar~~~ 204 (315)
T TIGR01370 134 GNYDVKYWDPEWKAIAFSYLD-RVIAQGFDGVYLDLIDAFEYWAEN--------GDNRPGAAAEMIAFVCEIAAYARAQN 204 (315)
T ss_pred CceeEecccHHHHHHHHHHHH-HHHHcCCCeEeeccchhhhhhccc--------CCcchhhHHHHHHHHHHHHHHHHHHC
Confidence 344445555444444322222 2466788888888 777643211 122332 3566666779998
Q ss_pred CeEEEEeeCCcc--cc-----C--------------CCC---CCccchHHHHHHHHHhcCCcEEEeeCCCCC
Q 039407 120 LKLGIYSSAGYY--TC-----S--------------KQM---PGSLGYEDQDAKTFASWGVDYLKYDNCYND 167 (397)
Q Consensus 120 lk~Giw~~pg~~--~c-----~--------------~~~---pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 167 (397)
-.+-|...-|.. .+ . .+. ..-.++.-..++++++-|+.-+-+|+|..+
T Consensus 205 P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~ 276 (315)
T TIGR01370 205 PQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDG 276 (315)
T ss_pred CCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 887776554421 11 0 000 111344445566777779999999999764
No 206
>PLN02455 fructose-bisphosphate aldolase
Probab=29.99 E-value=90 Score=31.18 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCcc--chHHHHH---HHHHhcCCcEEEeeCCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSL--GYEDQDA---KTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~--~~~~~~~---~~~~~wGvdylK~D~~~~ 166 (397)
++++++++++|+-|||=++-|.....++ +|.+ .-++.+. +.+.+-|.+|=|+.....
T Consensus 87 ~p~~~~L~~~GIvPGIKVDkGl~~l~g~-~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 148 (358)
T PLN02455 87 KPFVDVLKENGVLPGIKVDKGTVELAGT-NGETTTQGLDGLGARCAKYYEAGARFAKWRAVLK 148 (358)
T ss_pred cCHHHHHHHCCCeeeEEecCCccccCCC-CCCccCcchHHHHHHHHHHHhcCCceeeceeeee
Confidence 6789999999999999999876544332 3322 1234444 445555999999888643
No 207
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.77 E-value=3.5e+02 Score=25.95 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCC-eEEEEeeCCccc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGL-KLGIYSSAGYYT 132 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl-k~Giw~~pg~~~ 132 (397)
..+.+.+.+.++.+. +.|.+.|.+ . -|++... |+ +..+++++++.|+ ++.|.++.
T Consensus 39 ~ls~eei~~~i~~~~-----~~gi~~I~~----t------GGEPll~----~~-l~~iv~~l~~~g~~~v~i~TNG---- 94 (302)
T TIGR02668 39 ELSPEEIERIVRVAS-----EFGVRKVKI----T------GGEPLLR----KD-LIEIIRRIKDYGIKDVSMTTNG---- 94 (302)
T ss_pred cCCHHHHHHHHHHHH-----HcCCCEEEE----E------Ccccccc----cC-HHHHHHHHHhCCCceEEEEcCc----
Confidence 478888888888764 445566655 1 1444433 34 8889999999988 66664432
Q ss_pred cCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 133 CSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 133 c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
. .+...++.+++.|++.|.+..
T Consensus 95 -------~--ll~~~~~~l~~~g~~~v~iSl 116 (302)
T TIGR02668 95 -------I--LLEKLAKKLKEAGLDRVNVSL 116 (302)
T ss_pred -------h--HHHHHHHHHHHCCCCEEEEEe
Confidence 1 234567778899999776554
No 208
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=29.67 E-value=4e+02 Score=24.48 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCC---ccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHh
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPG---SLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMN 184 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg---~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~ 184 (397)
++.+.+..|+.|+++=+..... +.|.+ +..-++..++...+-|.||||+.+.. ....+++..+.
T Consensus 111 i~~v~~~~~~~g~~~iie~~~~-----g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--------~~~~~~~i~~~ 177 (235)
T cd00958 111 LARVAAEAHKYGLPLIAWMYPR-----GPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--------DAESFKEVVEG 177 (235)
T ss_pred HHHHHHHHHHcCCCEEEEEecc-----CCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--------CHHHHHHHHhc
Confidence 7888888889999987754331 11111 11222333555778999999995421 22345555556
Q ss_pred cCCCeEEE
Q 039407 185 TGRPIYYS 192 (397)
Q Consensus 185 ~g~~i~~~ 192 (397)
...|++.+
T Consensus 178 ~~~pvv~~ 185 (235)
T cd00958 178 CPVPVVIA 185 (235)
T ss_pred CCCCEEEe
Confidence 66787654
No 209
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=29.36 E-value=67 Score=31.24 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCC--CeEEEEeeCCccccCC-----CCCC-ccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHH--
Q 039407 108 IKALADYVHGKG--LKLGIYSSAGYYTCSK-----QMPG-SLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPV-- 177 (397)
Q Consensus 108 l~~l~~~i~~~G--lk~Giw~~pg~~~c~~-----~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~-- 177 (397)
+..+.+.+|+++ +|+-|-+.-....... ..|. ...+++..++.++++|||+|-+|+-+.......+.|..
T Consensus 53 ~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll 132 (299)
T cd02879 53 FSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLL 132 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHH
Confidence 666667777654 6665554332110000 1233 34667888889999999999999987643222334444
Q ss_pred --HHHHHHh----cC-CCeEEEec
Q 039407 178 --MTRALMN----TG-RPIYYSLC 194 (397)
Q Consensus 178 --m~~al~~----~g-~~i~~~~c 194 (397)
++++|++ .| ..++++..
T Consensus 133 ~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 133 EEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHhhccCCCcEEEEee
Confidence 5555543 23 35666644
No 210
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=29.03 E-value=2.4e+02 Score=30.15 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 137 MPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 137 ~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
+|.+++++...++.+.+.|||.+.+|...+
T Consensus 175 np~V~~~l~~~~~~W~~~GvDGfRlDa~~~ 204 (551)
T PRK10933 175 NPAVRAELKKVCEFWADRGVDGLRLDVVNL 204 (551)
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEEcchhh
Confidence 477778888888887889999999997543
No 211
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=28.95 E-value=5.1e+02 Score=24.61 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC-CCeEEEEeeCCcccc
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGK-GLKLGIYSSAGYYTC 133 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c 133 (397)
+|++.+++.+..| ...||+-+.|-.|= |+.|..-. .| ++...++++++ |++.- |
T Consensus 39 vt~~~l~k~~~el-----~kkGy~g~llSGGm-----~srg~VPl--~k----f~d~lK~lke~~~l~in---------a 93 (275)
T COG1856 39 VTTKSLLKRCMEL-----EKKGYEGCLLSGGM-----DSRGKVPL--WK----FKDELKALKERTGLLIN---------A 93 (275)
T ss_pred cchHHHHHHHHHH-----HhcCceeEEEeCCc-----CCCCCccH--HH----HHHHHHHHHHhhCeEEE---------E
Confidence 7888888887776 55689999986553 33444322 23 34444455554 55532 1
Q ss_pred CCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCC--------CCccchHHHHHHHHHhcCCCeEEE
Q 039407 134 SKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDG--------SKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 134 ~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~--------~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
|-|... +.+++.+++-++|-+-+||.+... ...++.|-+-.+-|...|-.+++-
T Consensus 94 ---HvGfvd--E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpH 155 (275)
T COG1856 94 ---HVGFVD--ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPH 155 (275)
T ss_pred ---Eeeecc--HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceecee
Confidence 234344 778999999999999999987631 123567777777777777555443
No 212
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=28.89 E-value=96 Score=27.29 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=30.8
Q ss_pred ccCceEEEeCCccccCCCCCCCCeee-cC-CCCCCcHHHHHHHHHhCCCeEEEEeeC
Q 039407 74 KLGYIYVNIDDCWGEQDRDEKGNLQA-RN-TTFPSGIKALADYVHGKGLKLGIYSSA 128 (397)
Q Consensus 74 ~~Gy~~i~iDdgW~~~~rd~~G~~~~-~~-~~FP~Gl~~l~~~i~~~Glk~Giw~~p 128 (397)
+.|++.+++|-. |.+.. +. .-|| |+..+.++++++|++++|=++.
T Consensus 22 ~~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn~ 68 (170)
T TIGR01668 22 KVGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSNN 68 (170)
T ss_pred HCCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeCC
Confidence 357788888831 22222 22 2354 6999999999999999887764
No 213
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=28.80 E-value=3e+02 Score=26.96 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=67.4
Q ss_pred cccccccccccCCCC-CCCceE-EechhhhccC--------------CCHHHHHHHHHHHHHc-CCcccCceEEEeCCcc
Q 039407 24 NNQPLRRNLLANGLA-ETPAMG-WNSWNHFWGN--------------INEDIIKAAADALVSS-GLAKLGYIYVNIDDCW 86 (397)
Q Consensus 24 ~~~~~~~~~~~~g~~-~~pp~G-wnSW~~~~~~--------------i~e~~i~~~ad~l~~~-gl~~~Gy~~i~iDdgW 86 (397)
.--+++..-++.-++ +--|.. |||.+-.||- |.++.|++....+... |..+...+|+.|=
T Consensus 10 ~~gp~ksrryG~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis--- 86 (296)
T COG0731 10 VFGPVKSRRYGISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTIS--- 86 (296)
T ss_pred CCCCccccccccccCCccccchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEe---
Confidence 333444444444444 334555 9999877774 5688888888876321 1000122333331
Q ss_pred ccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 87 GEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 87 ~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
..|. |.-+|+ |..+++.+|++|.+.-.=++ -|+. ....+.+..-..=|+|+|.-..
T Consensus 87 ------~~GE----PTLy~~-L~elI~~~k~~g~~~tflvT----------Ngsl---pdv~~~L~~~dql~~sLdA~~~ 142 (296)
T COG0731 87 ------LSGE----PTLYPN-LGELIEEIKKRGKKTTFLVT----------NGSL---PDVLEELKLPDQLYVSLDAPDE 142 (296)
T ss_pred ------CCCC----cccccC-HHHHHHHHHhcCCceEEEEe----------CCCh---HHHHHHhccCCEEEEEeccCCH
Confidence 1343 567788 99999999999953222122 1222 4445556677777999998754
No 214
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=28.53 E-value=1.4e+02 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
+.+++.+|++|+++-.|+--. ...++.+.++|||.|=.|+
T Consensus 194 ~~~v~~~~~~gl~v~~wTvn~---------------~~~~~~l~~~gvdgiiTD~ 233 (234)
T cd08570 194 QAFLPELKKNGKKVFVWTVNT---------------EEDMRYAIRLGVDGVITDD 233 (234)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEeCC
Confidence 789999999999999998542 2357788899999998875
No 215
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=28.20 E-value=54 Score=27.18 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=28.4
Q ss_pred CeEEEEeeCCccccCCCCCCc-cc-hH--HHHHHHHHhcCCcEEEeeCCC
Q 039407 120 LKLGIYSSAGYYTCSKQMPGS-LG-YE--DQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 120 lk~Giw~~pg~~~c~~~~pg~-~~-~~--~~~~~~~~~wGvdylK~D~~~ 165 (397)
|++|+|+.-....-. .+|=. .+ .+ +.+++.++++|+.+|-+|.--
T Consensus 10 L~~GM~V~~~~~~w~-~~pfl~~~f~I~s~~~I~~L~~~gi~~V~Id~~k 58 (128)
T PF11871_consen 10 LKPGMYVSRLDRSWL-EHPFLFQGFLIKSQADIEKLRRLGIQEVYIDPDK 58 (128)
T ss_pred CCCCcEEEecCCCcc-CCCeeeeceeECCHHHHHHHHHCCCcEEEEECCC
Confidence 688888875321111 11211 22 22 578889999999999999753
No 216
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=28.07 E-value=1.8e+02 Score=29.54 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=43.1
Q ss_pred CCeEEEEeeCCccccCCCCCCccchH--HHHHHHHHhcCCcEEEeeCCC--CCCCCc---cchHHHHHHHHHhcCCCeEE
Q 039407 119 GLKLGIYSSAGYYTCSKQMPGSLGYE--DQDAKTFASWGVDYLKYDNCY--NDGSKP---MDRYPVMTRALMNTGRPIYY 191 (397)
Q Consensus 119 Glk~Giw~~pg~~~c~~~~pg~~~~~--~~~~~~~~~wGvdylK~D~~~--~~~~~~---~~~y~~m~~al~~~g~~i~~ 191 (397)
.+.||||+- +...-.++-+.++..+ ...++.+++.||+.|-+-.-. ....+. ....+.++++|++.|-.+..
T Consensus 8 ~f~~~~w~~-~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 8 RFTFGLWTV-GWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred ceEEEeecc-CCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 468999965 3222233334444333 567888999999999864211 111111 12356789999999976543
No 217
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.73 E-value=1.7e+02 Score=28.29 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCc---c---cc--CCCCCCc-cchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSSAGY---Y---TC--SKQMPGS-LGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVM 178 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~---~---~c--~~~~pg~-~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m 178 (397)
...+++..|+.|+|+-+-+.-.. . .. .-..|.. ..+++..++.++++|+|.|-+|+-+... ...+.|..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~f 125 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQF 125 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHH
Confidence 36789999999999766654211 0 00 0012333 3577888888999999999999976432 223445554
Q ss_pred HHHHH
Q 039407 179 TRALM 183 (397)
Q Consensus 179 ~~al~ 183 (397)
.+.|+
T Consensus 126 l~~lr 130 (313)
T cd02874 126 LRELS 130 (313)
T ss_pred HHHHH
Confidence 44443
No 218
>PRK04326 methionine synthase; Provisional
Probab=27.55 E-value=2.2e+02 Score=27.94 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHH----hCCCeEEEEeeCCccccCCCCCCccchHHH
Q 039407 71 GLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVH----GKGLKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 71 gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~----~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
.|.++|.++|+||+-=-.. .|.-.+.+.+.++ ..+.+.++++..|. +..
T Consensus 169 ~l~~~G~~~iqidEP~l~~--------------~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~-------------~~~ 221 (330)
T PRK04326 169 NLVEAGAKYIQIDEPALAT--------------HPEDVEIAVEALNRIVKGINAKLGLHVCYGD-------------YSR 221 (330)
T ss_pred HHHHCCCCEEEecCchhhc--------------CHHHHHHHHHHHHHHHhCCCCEEEEEEeCCC-------------cHH
Confidence 3677899999999842211 1111222222222 22445566555431 235
Q ss_pred HHHHHHhcCCcEEEeeCCC
Q 039407 147 DAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~ 165 (397)
..+.+.+.|+|.|-+|++.
T Consensus 222 ~~~~l~~~~vd~i~~d~~~ 240 (330)
T PRK04326 222 IAPYILEFPVDQFDLEFAN 240 (330)
T ss_pred HHHHHHhCCCCEEEEEeCC
Confidence 6778899999999999985
No 219
>PRK08508 biotin synthase; Provisional
Probab=27.46 E-value=2.1e+02 Score=27.55 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEE-EeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCcccc
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYV-NIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTC 133 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i-~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c 133 (397)
.+.++|++.|+.+.+. |..-| .+++|=.- +...|. =+..+++.||+.+....++...|..
T Consensus 40 ~s~eeI~~~a~~a~~~-----g~~~~~lv~sg~~~-----------~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~~-- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN-----GALGFCLVTSGRGL-----------DDKKLE-YVAEAAKAVKKEVPGLHLIACNGTA-- 100 (279)
T ss_pred CCHHHHHHHHHHHHHC-----CCCEEEEEeccCCC-----------CcccHH-HHHHHHHHHHhhCCCcEEEecCCCC--
Confidence 6899999999987554 44444 34433211 111121 2677888999887665555544321
Q ss_pred CCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 134 SKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 134 ~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
-...++.+++.|+|.+-++.
T Consensus 101 ----------~~e~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 101 ----------SVEQLKELKKAGIFSYNHNL 120 (279)
T ss_pred ----------CHHHHHHHHHcCCCEEcccc
Confidence 15577888999999888864
No 220
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=27.26 E-value=3.2e+02 Score=26.04 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=35.3
Q ss_pred CCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 101 NTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 101 ~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
.+.+|+-+| +.+.+-...+|.|..... | ..++.++..|||||=+|.-+.
T Consensus 3 ~~~~~n~lk---~~l~~g~~~~g~~~~~~s-------p-------~~~e~~a~~G~D~v~iD~EHg 51 (256)
T PRK10558 3 NDVFPNKFK---AALAAKQVQIGCWSALAN-------P-------ITTEVLGLAGFDWLVLDGEHA 51 (256)
T ss_pred CCccCHHHH---HHHHcCCceEEEEEcCCC-------c-------HHHHHHHhcCCCEEEEccccC
Confidence 456777444 566766678999986522 1 246778999999999998655
No 221
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=27.21 E-value=5.4e+02 Score=24.43 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCeEEEEeeC-Cc--cccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHh
Q 039407 108 IKALADYVHGKGLKLGIYSSA-GY--YTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMN 184 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~p-g~--~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~ 184 (397)
++.+++.+|+.|+.+-+...+ |. .+|. ....+...++...+.|.||||..|.. .-..|++..+.
T Consensus 128 ~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~-----~~~~i~~a~~~a~e~GAD~vKt~~~~--------~~~~l~~~~~~ 194 (267)
T PRK07226 128 LGEVAEECEEWGMPLLAMMYPRGPGIKNEY-----DPEVVAHAARVAAELGADIVKTNYTG--------DPESFREVVEG 194 (267)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCccCCCc-----cHHHHHHHHHHHHHHCCCEEeeCCCC--------CHHHHHHHHHh
Confidence 566677777777776654322 11 1111 11223334566679999999999642 12446666555
Q ss_pred cCCCeEEEe
Q 039407 185 TGRPIYYSL 193 (397)
Q Consensus 185 ~g~~i~~~~ 193 (397)
+.-|++.+.
T Consensus 195 ~~ipV~a~G 203 (267)
T PRK07226 195 CPVPVVIAG 203 (267)
T ss_pred CCCCEEEEe
Confidence 566876653
No 222
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=27.20 E-value=62 Score=30.60 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCC
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDD 84 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDd 84 (397)
.+|.+.+++..+.| ++.+|+||++|+
T Consensus 96 alt~E~v~~vv~eL-----~~~~fDyIi~Ds 121 (272)
T COG2894 96 ALTPEGVKKVVNEL-----KAMDFDYIIIDS 121 (272)
T ss_pred cCCHHHHHHHHHHH-----HhcCCCEEEecC
Confidence 48999999999986 667899999994
No 223
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=27.16 E-value=1.5e+02 Score=29.85 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
+.+++.+|+.|+++-+|+--. ...++.+.++|||.|=.|+..
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN~---------------~~~~~~l~~~GVdgIiTD~P~ 254 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVNE---------------PWLYSLLWCSGVPSVTSDASH 254 (351)
T ss_pred HHHHHHHHHCCCEEEEEecCC---------------HHHHHHHHHCCCCEEEECCHH
Confidence 678999999999999998652 246788899999999999763
No 224
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.90 E-value=2.4e+02 Score=25.31 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHH----HHHHHHhc
Q 039407 110 ALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPV----MTRALMNT 185 (397)
Q Consensus 110 ~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~----m~~al~~~ 185 (397)
...+.+++.|++++|--- |.. ...++.+..+.+||||+|.-...... ...... +.+..++.
T Consensus 138 ~~l~~l~~~G~~i~ld~~-g~~-------------~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~ 202 (236)
T PF00563_consen 138 ENLRRLRSLGFRIALDDF-GSG-------------SSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL 202 (236)
T ss_dssp HHHHHHHHCT-EEEEEEE-TST-------------CGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCceeEeeec-cCC-------------cchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc
Confidence 666679999988876311 110 11355688999999999996543332 333333 44444566
Q ss_pred CCCeEEEe
Q 039407 186 GRPIYYSL 193 (397)
Q Consensus 186 g~~i~~~~ 193 (397)
|..++.+.
T Consensus 203 ~~~via~g 210 (236)
T PF00563_consen 203 GIKVIAEG 210 (236)
T ss_dssp T-EEEEEC
T ss_pred ccccceee
Confidence 77776663
No 225
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=26.86 E-value=56 Score=32.46 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH--cCCcccCceEEEeCCc-----------cccCCCCCCCCeeecCCCCCCcHHHHHHHHHhC---
Q 039407 55 INEDIIKAAADALVS--SGLAKLGYIYVNIDDC-----------WGEQDRDEKGNLQARNTTFPSGIKALADYVHGK--- 118 (397)
Q Consensus 55 i~e~~i~~~ad~l~~--~gl~~~Gy~~i~iDdg-----------W~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~--- 118 (397)
.|.++|.+.++.++. ...+++||+-|.|-.+ +.+...|.+|-=..|..|| +..+++.|++.
T Consensus 139 mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf---~~Eii~aIr~~vg~ 215 (341)
T PF00724_consen 139 MTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARF---LLEIIEAIREAVGP 215 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHH---HHHHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHH---HHHHHHHHHHHhcC
Q ss_pred CCeEEEEeeCCccccCCCCCCccchHHH--HHHHHHhcCCcEEEe
Q 039407 119 GLKLGIYSSAGYYTCSKQMPGSLGYEDQ--DAKTFASWGVDYLKY 161 (397)
Q Consensus 119 Glk~Giw~~pg~~~c~~~~pg~~~~~~~--~~~~~~~wGvdylK~ 161 (397)
.+.+|+=+++.. ..++.....+. .++.+.+.|+|++-+
T Consensus 216 d~~v~~Rls~~~-----~~~~g~~~~e~~~~~~~~~~~~~d~~~~ 255 (341)
T PF00724_consen 216 DFPVGVRLSPDD-----FVEGGITLEETIEIAKLLEELGVDFLDV 255 (341)
T ss_dssp GGEEEEEEETTC-----SSTTSHHSHHHHHHHHHHHHHHHTTEEE
T ss_pred CceEEEEEeeec-----ccCCCCchHHHHHHHHHHHHHhhhhccc
No 226
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=26.44 E-value=1.9e+02 Score=28.81 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCeE-EEEeeCC---ccccC---CC-CCCccchHHHHHHHHHhcCCcEEEeeCCCCC-CCCccchHHHHH
Q 039407 109 KALADYVHGKGLKL-GIYSSAG---YYTCS---KQ-MPGSLGYEDQDAKTFASWGVDYLKYDNCYND-GSKPMDRYPVMT 179 (397)
Q Consensus 109 ~~l~~~i~~~Glk~-Giw~~pg---~~~c~---~~-~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~~~~~y~~m~ 179 (397)
...++..|+.|+|+ |.-+.+. ...|. .. ..+.+.+.+.+++..+.+|||.+=+|+=... .....++++.+.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 67889999999996 5445433 12222 22 4567778889999999999999999996553 233455666655
Q ss_pred HHHH
Q 039407 180 RALM 183 (397)
Q Consensus 180 ~al~ 183 (397)
+.|+
T Consensus 129 ~~L~ 132 (339)
T cd06547 129 RYLK 132 (339)
T ss_pred HHHH
Confidence 5554
No 227
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=26.22 E-value=4.8e+02 Score=25.46 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCcEE
Q 039407 146 QDAKTFASWGVDYL 159 (397)
Q Consensus 146 ~~~~~~~~wGvdyl 159 (397)
.-.+.|+.||.|.|
T Consensus 170 AEir~~r~~GaDvV 183 (289)
T PRK08931 170 AESKLYRSWGCDVI 183 (289)
T ss_pred HHHHHHHHcCCCEe
Confidence 34567889998875
No 228
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=25.93 E-value=1.1e+02 Score=29.75 Aligned_cols=49 Identities=22% Similarity=0.068 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhc-CCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASW-GVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~w-GvdylK~D~ 163 (397)
+.+++.+|+.|+++..|+--.. |. .-.-....+++.+.++ |||+|=.|+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~~--~~----~~~~~~~~~~~~l~~~~GVdgIiTD~ 295 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRNE--NL----FLAPDFKQDMDALYNAAGVDGVFTDF 295 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecCc--cc----ccccccccCHHHHHHHhCCCEEEcCC
Confidence 6899999999999999986520 10 0001124456778888 999998775
No 229
>KOG1557 consensus Fructose-biphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.47 E-value=91 Score=30.57 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCC----ccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPG----SLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg----~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
++|++-++++|+.+||=++-|...-.+++-+ -++-+..-.+++++-|.+|-|+....
T Consensus 91 kpf~~~L~~~givpGIKvDKG~vplaGt~~E~ttqGLD~L~~Rca~y~k~Ga~FAKWR~vl 151 (363)
T KOG1557|consen 91 KPFVDLLKEKGIVPGIKVDKGLVPLAGTNGETTTQGLDGLAERCAQYYKDGARFAKWRAVL 151 (363)
T ss_pred CCHHHHHHhcCCccceEecCCcccccccCCcceeechhhHHHHHHHHHHcCCchhheeEEE
Confidence 7789999999999999999876544443221 13445666777889999999998753
No 230
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=25.47 E-value=1.8e+02 Score=28.27 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCC-ccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPG-SLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+...++.+++.|+++...+-.|. || +.+.....++.+.+.+++.+|+=.+
T Consensus 165 ~~~ai~~l~~~gi~v~~~lI~Gl-------Pget~e~~~~t~~~l~~l~~d~i~i~~l 215 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCSHVILGL-------PGEDREEMMETAKIVSLLDVDGIKIHPL 215 (302)
T ss_pred HHHHHHHHHHcCCEEEEeEEECC-------CCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 56677788888988887776654 44 4466677778888999999998544
No 231
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.41 E-value=2.8e+02 Score=24.55 Aligned_cols=103 Identities=14% Similarity=0.032 Sum_probs=0.0
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHH
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTF 151 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~ 151 (397)
.++.|+++++| |-..|.-..|+ -++.-.+.+++.||++|+|+=.-..++ +...+-.+..++..
T Consensus 18 ~~~~g~~fvii--------kateG~~~~D~-----~f~~n~~~a~~aGl~vG~Yhf~~~~~~----~~a~~eA~~f~~~~ 80 (177)
T cd06523 18 TLSKQLDLVII--------RVQYGSNYVDL-----KYKNNIKEFKKRGIPFGVYAFARGTST----ADAKAEARDFYNRA 80 (177)
T ss_pred HHhCCCCEEEE--------EEeCCCcccCH-----HHHHHHHHHHHcCCCeEEEEEeccCCH----HHHHHHHHHHHHHh
Q ss_pred HhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcC--CCeEEE
Q 039407 152 ASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTG--RPIYYS 192 (397)
Q Consensus 152 ~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g--~~i~~~ 192 (397)
+. .-.++=+|.=.............+.+.+++.| ++++++
T Consensus 81 ~~-~~~~~~lD~E~~~~~~~~~~~~~f~~~v~~~g~~~~~lYt 122 (177)
T cd06523 81 NK-KPTFYVLDVEVTSMSDMNAGVQAFISELRRLGAKKVGLYI 122 (177)
T ss_pred cC-CCceEEEeeccCCcchHHHHHHHHHHHHHHccCCcEEEEc
No 232
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.37 E-value=5.2e+02 Score=25.33 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCC--eEEEEeeCCcc
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGL--KLGIYSSAGYY 131 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Gl--k~Giw~~pg~~ 131 (397)
..+.++++..++.+++ .|++.|.+=+ |++.. .|+ +..+++++++.+. ++.|-++
T Consensus 44 ~ls~eei~~li~~~~~-----~Gv~~I~~tG----------GEPll----r~d-l~~li~~i~~~~~l~~i~itTN---- 99 (329)
T PRK13361 44 VLSLEELAWLAQAFTE-----LGVRKIRLTG----------GEPLV----RRG-CDQLVARLGKLPGLEELSLTTN---- 99 (329)
T ss_pred CCCHHHHHHHHHHHHH-----CCCCEEEEEC----------cCCCc----ccc-HHHHHHHHHhCCCCceEEEEeC----
Confidence 4788899999988744 5667777732 33332 244 8899999998763 4555333
Q ss_pred ccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 132 TCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 132 ~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
|. .+...++.+++.|++.|-+..
T Consensus 100 -------G~--ll~~~~~~L~~aGl~~v~ISl 122 (329)
T PRK13361 100 -------GS--RLARFAAELADAGLKRLNISL 122 (329)
T ss_pred -------hh--HHHHHHHHHHHcCCCeEEEEe
Confidence 21 234567889999999876654
No 233
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=1.5e+02 Score=26.25 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=28.8
Q ss_pred hCCCeEEEEeeCC--ccccCCCC-CCccchHHHHHHHHHhcCCcEEEe
Q 039407 117 GKGLKLGIYSSAG--YYTCSKQM-PGSLGYEDQDAKTFASWGVDYLKY 161 (397)
Q Consensus 117 ~~Glk~Giw~~pg--~~~c~~~~-pg~~~~~~~~~~~~~~wGvdylK~ 161 (397)
-+|-|+-|..-|| +.||.-+| || |...+..|++-|||-|-.
T Consensus 35 f~gKkVvlf~lPGAFTPTCS~~hlPg----Y~~~~d~f~~kGVD~I~c 78 (165)
T COG0678 35 FKGKKVVLFSLPGAFTPTCSSSHLPG----YLELADEFKAKGVDEIYC 78 (165)
T ss_pred cCCCEEEEEeCCCccCCCcccccCcc----HHHHHHHHHHcCCceEEE
Confidence 3567898998885 57897643 65 344566788899987643
No 234
>PRK05402 glycogen branching enzyme; Provisional
Probab=24.54 E-value=2.4e+02 Score=31.22 Aligned_cols=69 Identities=10% Similarity=-0.060 Sum_probs=41.0
Q ss_pred eeEEEEEcCC-CCEEEEEEEcCCCce-EEEEeccccCCCCCCeeEEEEcCCCcccc--ee-----------------eee
Q 039407 319 QEVWAAPLSG-YRIALLLVNRGPWRY-AVTAKWEDIGIPPNSVVEARDLWEHKTLT--KQ-----------------FVG 377 (397)
Q Consensus 319 ~~vw~~~l~~-g~~~va~fN~~~~~~-~~~i~l~~lGl~~~~~~~v~DlWsg~~~~--g~-----------------~~g 377 (397)
.-++.+..++ ++.+|+++|.++.+. .+.|.+.. .+ ..+++++.+... |. ...
T Consensus 635 vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~-----~g--~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~ 707 (726)
T PRK05402 635 VLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ-----AG--RWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPH 707 (726)
T ss_pred EEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC-----CC--eEEEEEcCcchhhCCCCCCCCCceeccccccCCCCC
Confidence 4556666443 567899999987654 34554432 11 334444433211 00 013
Q ss_pred eEEEEEcCCcEEEEEEE
Q 039407 378 NLSAMVGSHACKMYILK 394 (397)
Q Consensus 378 ~~~~~L~ph~~~ll~l~ 394 (397)
++.+.|||-++.+|+..
T Consensus 708 ~~~i~lp~~~~~v~~~~ 724 (726)
T PRK05402 708 SLSLTLPPLATLILKPE 724 (726)
T ss_pred EEEEEeCCCEEEEEEEc
Confidence 57889999999999875
No 235
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=24.44 E-value=7e+02 Score=24.70 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC-CCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEE
Q 039407 54 NINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD-RDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 54 ~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~-rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 125 (397)
.+|++.+....+. ..-|.-.|++-...-... +-..+.+....+.+=.|++.+++.+|+.|-|+.+=
T Consensus 30 ~~~~~~~~~y~~r------A~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~Q 96 (353)
T cd02930 30 DGIDRLAAFYAER------ARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQ 96 (353)
T ss_pred CCCHHHHHHHHHH------hcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEee
Confidence 4688777666663 223455555433322111 00112222223344457999999999999987644
No 236
>COG4288 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.97 E-value=2.2e+02 Score=23.60 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=13.2
Q ss_pred EEEEEEcCCCceEEEEec
Q 039407 332 ALLLVNRGPWRYAVTAKW 349 (397)
Q Consensus 332 ~va~fN~~~~~~~~~i~l 349 (397)
-+++.|.++++..+.|.+
T Consensus 32 s~cilN~gDe~AkvrI~i 49 (124)
T COG4288 32 SLCILNTGDEPAKVRITI 49 (124)
T ss_pred eEEEEecCCCCceEEEEE
Confidence 478899998887665543
No 237
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.92 E-value=1.4e+02 Score=29.90 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=58.0
Q ss_pred CCCceEEechhhhccC-------CCHHHHHHHHHHHHHcCCcccC-ceEEEeCCccccCCCCCCCCeeecCCCCCCcHHH
Q 039407 39 ETPAMGWNSWNHFWGN-------INEDIIKAAADALVSSGLAKLG-YIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKA 110 (397)
Q Consensus 39 ~~pp~GwnSW~~~~~~-------i~e~~i~~~ad~l~~~gl~~~G-y~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~ 110 (397)
-++..+||+-...+.. .+.++|++.|..+ ++.| .+++.+ ..|-. .| ..++. +..
T Consensus 61 c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~a-----k~~Ga~r~c~~-aagr~-----~~------~~~~~-i~~ 122 (335)
T COG0502 61 CPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKA-----KAAGATRFCMG-AAGRG-----PG------RDMEE-VVE 122 (335)
T ss_pred CCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHH-----HHcCCceEEEE-EeccC-----CC------ccHHH-HHH
Confidence 3677889998765522 6899999999987 5566 455555 34432 12 23333 777
Q ss_pred HHHHHH-hCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEe
Q 039407 111 LADYVH-GKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKY 161 (397)
Q Consensus 111 l~~~i~-~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~ 161 (397)
+++.++ +.|++.. .+. |. --...++.+++-|+|++-+
T Consensus 123 ~v~~Vk~~~~le~c--~sl----------G~--l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 123 AIKAVKEELGLEVC--ASL----------GM--LTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHHHhcCcHHh--hcc----------CC--CCHHHHHHHHHcChhheec
Confidence 888888 6776632 222 21 1134577789999998755
No 238
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.81 E-value=2.6e+02 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
.+.|.++.+++|+.|- ++| |-...++.+.+.|++.+|+=-..
T Consensus 79 ~~~L~~~~~~~Gi~~~--stp--------------fd~~svd~l~~~~v~~~KI~S~~ 120 (327)
T TIGR03586 79 HKELFERAKELGLTIF--SSP--------------FDETAVDFLESLDVPAYKIASFE 120 (327)
T ss_pred HHHHHHHHHHhCCcEE--Ecc--------------CCHHHHHHHHHcCCCEEEECCcc
Confidence 4779999999999863 222 22334566789999999996643
No 239
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=23.78 E-value=1.9e+02 Score=27.25 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=53.7
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCcccCceEEEe--CCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEee
Q 039407 50 HFWGNINEDIIKAAADALVSSGLAKLGYIYVNI--DDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSS 127 (397)
Q Consensus 50 ~~~~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~i--DdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~ 127 (397)
.+.+.+|++. ++.|.. .++ ++++| |+- +. -...|-|.... .. .+|+++++.++..|+++.|+.+
T Consensus 67 NlE~a~teEm-l~ia~~-----~kP---~~vtLVPe~r-~e--vTTegGlD~~~-~~-~~l~~~v~~L~~~GirVSLFiD 132 (243)
T COG0854 67 NLEMAPTEEM-LAIALK-----TKP---HQVTLVPEKR-EE--VTTEGGLDVAG-QL-DKLRDAVRRLKNAGIRVSLFID 132 (243)
T ss_pred ecccCchHHH-HHHHHh-----cCC---CeEEeCCCch-hh--cccccchhhhh-hh-hhHHHHHHHHHhCCCeEEEEeC
Confidence 4778899998 666654 355 33333 211 10 11234443321 12 3599999999999999999999
Q ss_pred CCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 128 AGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 128 pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
|.. ..++.-+++|.++|.+--
T Consensus 133 ~d~---------------~qi~aa~~~gA~~IELhT 153 (243)
T COG0854 133 PDP---------------EQIEAAAEVGAPRIELHT 153 (243)
T ss_pred CCH---------------HHHHHHHHhCCCEEEEec
Confidence 842 124445799999998754
No 240
>PRK12677 xylose isomerase; Provisional
Probab=23.16 E-value=3.5e+02 Score=27.48 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HhCCCeEEEEeeCCccccCCCCCCccchH--HHHHHHHHhcCCcEEEeeCCCCCCCCccch-----HHHHHHHHHhcCCC
Q 039407 116 HGKGLKLGIYSSAGYYTCSKQMPGSLGYE--DQDAKTFASWGVDYLKYDNCYNDGSKPMDR-----YPVMTRALMNTGRP 188 (397)
Q Consensus 116 ~~~Glk~Giw~~pg~~~c~~~~pg~~~~~--~~~~~~~~~wGvdylK~D~~~~~~~~~~~~-----y~~m~~al~~~g~~ 188 (397)
.+..+.|||| +-+...-.++-+.++.++ ...++.+++.||+.|.+..-.......... ...++++++..|-.
T Consensus 4 ~~~~f~~~~w-~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 4 PEDKFSFGLW-TVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred ccceeEEEEe-eccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCe
Q ss_pred eEEEecC
Q 039407 189 IYYSLCE 195 (397)
Q Consensus 189 i~~~~c~ 195 (397)
+.....+
T Consensus 83 v~~v~~n 89 (384)
T PRK12677 83 VPMVTTN 89 (384)
T ss_pred eEEEecC
No 241
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=23.07 E-value=90 Score=27.63 Aligned_cols=85 Identities=27% Similarity=0.291 Sum_probs=46.8
Q ss_pred ccccccCCCCCCCceEEechhhhccCCCHHHHHHHHHHHHHcCCc--ccCceEEEeCCccccCCCCCCCCeeecCCCCCC
Q 039407 29 RRNLLANGLAETPAMGWNSWNHFWGNINEDIIKAAADALVSSGLA--KLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPS 106 (397)
Q Consensus 29 ~~~~~~~g~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~l~~~gl~--~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~ 106 (397)
...+...|+ |+|- |.|....|.....++|+.+.+. ++ ..+--.+.||--+... ...+......
T Consensus 42 ~~~a~~aGl----~~G~---Yhf~~~~~~~~a~~qA~~f~~~-~~~~~~~~~~~~lD~E~~~~-------~~~~~~~~~~ 106 (181)
T PF01183_consen 42 IKNAKAAGL----PVGA---YHFARATNSSDAEAQADYFLNQ-VKGGDPGDLPPALDVEDDKS-------NNPSKSDNTA 106 (181)
T ss_dssp HHHHHHTTS----EEEE---EEE--TTTHCHHHHHHHHHHHC-THTSSTSCS-EEEEE-S-GG-------CCSSHHHHHH
T ss_pred HHHHHHcCC----eEEE---EEEeccCCcccHHHHHHHHHHH-hcccCCCcceEEEecccccc-------CCCCHHHHHH
Confidence 344555666 5552 2333344788889999998773 32 1122235677443210 0001111112
Q ss_pred cHHHHHHHHHh-CCCeEEEEeeC
Q 039407 107 GIKALADYVHG-KGLKLGIYSSA 128 (397)
Q Consensus 107 Gl~~l~~~i~~-~Glk~Giw~~p 128 (397)
-++.+++++++ .|.+++||...
T Consensus 107 ~~~~f~~~~~~~~G~~~~iY~~~ 129 (181)
T PF01183_consen 107 WVKAFLDEVEKAAGYKPGIYTSK 129 (181)
T ss_dssp HHHHHHHHHHHHCTSEEEEEEEH
T ss_pred HHHHHHHHHHHHhCCceeEeecH
Confidence 47899999955 89999999986
No 242
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.74 E-value=5.4e+02 Score=23.79 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEe
Q 039407 107 GIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKY 161 (397)
Q Consensus 107 Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~ 161 (397)
-+...++++++.|+++-+.+.... .| +-..+++...++.+.+.|++.|-+
T Consensus 116 ~~~~~i~~a~~~G~~v~~~~~~~~-~~----~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 116 NAEEAIEAAKEAGLEVEGSLEDAF-GC----KTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeec-CC----CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 378889999999999888875421 22 234578889999999999999885
No 243
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.73 E-value=2.5e+02 Score=27.50 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCC-ccchHHHHHHHHHhcCCcEEEeeCCCCC-CCC-------------cc
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPG-SLGYEDQDAKTFASWGVDYLKYDNCYND-GSK-------------PM 172 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg-~~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~-------------~~ 172 (397)
...-+..+|++|+|+.-++-.|- || ..+-+-+.++.+++.||+.||+--+.-- +.+ ..
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GL-------PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~ 242 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGL-------PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSL 242 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC-------CCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccH
Confidence 34456677888888776665443 65 3344456677889999999999887441 111 12
Q ss_pred chHH-HHHHHHHhcCCCeEEE
Q 039407 173 DRYP-VMTRALMNTGRPIYYS 192 (397)
Q Consensus 173 ~~y~-~m~~al~~~g~~i~~~ 192 (397)
+.|. ...+.|+..-+.|++-
T Consensus 243 eeYv~~~~d~le~lpp~vviH 263 (312)
T COG1242 243 EEYVELVCDQLEHLPPEVVIH 263 (312)
T ss_pred HHHHHHHHHHHHhCCcceEEE
Confidence 3343 3567777776777664
No 244
>PRK09505 malS alpha-amylase; Reviewed
Probab=22.62 E-value=2.3e+02 Score=31.18 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC-------------CCCCCCeeecC----CCCC--CcHHHHHHHHH
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD-------------RDEKGNLQARN----TTFP--SGIKALADYVH 116 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~-------------rd~~G~~~~~~----~~FP--~Gl~~l~~~i~ 116 (397)
+-+.|.+.++.+ +++|++.|.|=--++... ....|++..|- .+|- ..++.|++.+|
T Consensus 228 dl~Gi~~kLdyl-----~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH 302 (683)
T PRK09505 228 DLRGLTEKLDYL-----QQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAH 302 (683)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 456677777876 777888776532221100 01245555442 2342 14899999999
Q ss_pred hCCCeEEE
Q 039407 117 GKGLKLGI 124 (397)
Q Consensus 117 ~~Glk~Gi 124 (397)
++|||+-+
T Consensus 303 ~~Gi~Vil 310 (683)
T PRK09505 303 QRGIRILF 310 (683)
T ss_pred HCCCEEEE
Confidence 99999543
No 245
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=22.28 E-value=2e+02 Score=29.67 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHhcCCcEEEeeCCCCCCC---------CccchHHH----HHHHHHhc----CCCeEEEecCCCCCC---
Q 039407 141 LGYEDQDAKTFASWGVDYLKYDNCYNDGS---------KPMDRYPV----MTRALMNT----GRPIYYSLCEWGDMH--- 200 (397)
Q Consensus 141 ~~~~~~~~~~~~~wGvdylK~D~~~~~~~---------~~~~~y~~----m~~al~~~----g~~i~~~~c~~g~~~--- 200 (397)
..|.+..++.++.|+||.|-+|+-+.++. ...+.|.. +|+.|+.. ||...+++-......
T Consensus 153 e~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~ 232 (441)
T COG3325 153 ENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE 232 (441)
T ss_pred HHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh
Confidence 45667888999999999999999876421 11334554 55566544 455556543221100
Q ss_pred -cccc----cccccCeEeecCCCCCchHHH
Q 039407 201 -PALW----GDKVGNSWRTTGDIEDTWDSM 225 (397)
Q Consensus 201 -~~~~----~~~~~~~~Ris~D~~~~w~~~ 225 (397)
.... ...+.|+| +-|....|..+
T Consensus 233 ~~~~~~~~~~vDyiNiM--TYDf~G~Wn~~ 260 (441)
T COG3325 233 GLNHAEIAQYVDYINIM--TYDFHGAWNET 260 (441)
T ss_pred cccHHHHHHHHhhhhee--eeecccccccc
Confidence 0000 02345666 66777777654
No 246
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=22.13 E-value=4.3e+02 Score=26.77 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCeeecCCCCCC-----cHHHHHHHHHhCC--CeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCC
Q 039407 95 GNLQARNTTFPS-----GIKALADYVHGKG--LKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYND 167 (397)
Q Consensus 95 G~~~~~~~~FP~-----Gl~~l~~~i~~~G--lk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 167 (397)
|.-...|.+||+ .|..++++|++.+ ..+|+=+..+ ..++....-..+-|+|||-+|.-..+
T Consensus 172 g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~------------~~~~~~~~~~~~ag~D~ItIDG~~GG 239 (368)
T PF01645_consen 172 GVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAG------------RGVEDIAAGAAKAGADFITIDGAEGG 239 (368)
T ss_dssp T--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-S------------TTHHHHHHHHHHTT-SEEEEE-TT--
T ss_pred CCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCC------------CcHHHHHHhhhhccCCEEEEeCCCCC
Confidence 555566778875 6788899999876 5566655542 12333334477999999999998654
Q ss_pred C-C-----------CccchHHHHHHHHHhcC
Q 039407 168 G-S-----------KPMDRYPVMTRALMNTG 186 (397)
Q Consensus 168 ~-~-----------~~~~~y~~m~~al~~~g 186 (397)
. . +.........+.|.+.|
T Consensus 240 TGAap~~~~d~~GlP~~~~l~~a~~~L~~~g 270 (368)
T PF01645_consen 240 TGAAPLTSMDHVGLPTEYALARAHQALVKNG 270 (368)
T ss_dssp -SSEECCHHHHC---HHHHHHHHHHHHHCTT
T ss_pred CCCCchhHHhhCCCcHHHHHHHHHHHHHHcC
Confidence 1 1 11223344556677666
No 247
>PHA02119 hypothetical protein
Probab=22.09 E-value=82 Score=23.87 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.3
Q ss_pred eeecCCCCCCcH-HHHHHHHHhCCCeE
Q 039407 97 LQARNTTFPSGI-KALADYVHGKGLKL 122 (397)
Q Consensus 97 ~~~~~~~FP~Gl-~~l~~~i~~~Glk~ 122 (397)
+..+.+|||.=+ +.++||+++.|...
T Consensus 44 isf~~~kfp~i~~~divdylr~lgy~~ 70 (87)
T PHA02119 44 ISFDVAKFPAIMPKDIVDYLRSLGYDA 70 (87)
T ss_pred EEeccccCCccccHHHHHHHHHccchh
Confidence 456678999733 88999999999763
No 248
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=21.90 E-value=4.5e+02 Score=25.33 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCcHHHHHHHHHhCCC-----eEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCC
Q 039407 105 PSGIKALADYVHGKGL-----KLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNC 164 (397)
Q Consensus 105 P~Gl~~l~~~i~~~Gl-----k~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~ 164 (397)
+.+.+.|++.+|++|. ++-+|+--. ...++.+.++|||.|=.|+-
T Consensus 190 ~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~---------------~~~~~~ll~~GVDGIITD~P 239 (265)
T cd08576 190 YRTCARLREAIKKRDTPGYLGKVYGWTSDK---------------GSSVRKLLRLGVDGIITNYP 239 (265)
T ss_pred ccccHHHHHHHHHcCCCCcCCeEEEEeCCC---------------HHHHHHHHhcCCCEEEECCH
Confidence 4678999999999999 777776431 24677888999999988876
No 249
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=1.2e+02 Score=30.21 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCC
Q 039407 58 DIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQM 137 (397)
Q Consensus 58 ~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~ 137 (397)
++..++++.|.+.|++.. +.-+.+=.+|.. ..|- -++.|++++++.|+++-+=++|...+-.+
T Consensus 16 ~~~~~Yi~~~~~~Gf~~I-Ftsl~~~~~~~~-------------~~~~-~~~ell~~Anklg~~vivDvnPsil~~l~-- 78 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRI-FTSLLIPEEDAE-------------LYFH-RFKELLKEANKLGLRVIVDVNPSILKELN-- 78 (360)
T ss_pred hhHHHHHHHHHHcCccce-eeecccCCchHH-------------HHHH-HHHHHHHHHHhcCcEEEEEcCHHHHhhcC--
Confidence 345578888866555532 122222222211 1232 28999999999999998888875421110
Q ss_pred CCccchHHHHHHHHHhcCCcEEEeeCCCCC
Q 039407 138 PGSLGYEDQDAKTFASWGVDYLKYDNCYND 167 (397)
Q Consensus 138 pg~~~~~~~~~~~~~~wGvdylK~D~~~~~ 167 (397)
.=-..+..|.+.|++.|.+|.-...
T Consensus 79 -----~S~~~l~~f~e~G~~glRlD~gfS~ 103 (360)
T COG3589 79 -----ISLDNLSRFQELGVDGLRLDYGFSG 103 (360)
T ss_pred -----CChHHHHHHHHhhhhheeecccCCH
Confidence 0012567899999999999997663
No 250
>PLN02227 fructose-bisphosphate aldolase I
Probab=21.49 E-value=1.7e+02 Score=29.72 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCC-----CCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQ-----MPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~-----~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
++++++++++|+-|||=++-|.....++ .+| ++-+..-++.+++-|++|=|+...-.
T Consensus 131 ~pf~d~L~~~GIVPGIKVDKGl~~l~g~~~e~~tqG-LDgL~~R~~~Y~~~GarFAKWRsVik 192 (399)
T PLN02227 131 KKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQG-LDGLASRTAAYYQQGARFAKWRTVVS 192 (399)
T ss_pred cCHHHHHHHCCCeeeEEcCCCcccCCCCCCCccCCC-hHHHHHHHHHHHHcCCceeehheeec
Confidence 7889999999999999999876544332 122 22233334445566999999988644
No 251
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=21.49 E-value=4.1e+02 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=18.8
Q ss_pred CCEEEEEEEcCCC-ceEEEEeccccC
Q 039407 329 YRIALLLVNRGPW-RYAVTAKWEDIG 353 (397)
Q Consensus 329 g~~~va~fN~~~~-~~~~~i~l~~lG 353 (397)
+...|.++|++.+ +++++|.++.+.
T Consensus 115 ~~~~v~vvN~~~~~~~~~~l~l~g~~ 140 (189)
T smart00813 115 GSLTVKVVNRSPEEAVTVTISLRGLK 140 (189)
T ss_pred CEEEEEEEeCCCCcCEEEEEEecCCc
Confidence 3677899999754 788888887543
No 252
>PLN02425 probable fructose-bisphosphate aldolase
Probab=21.45 E-value=1.7e+02 Score=29.59 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCC-----CCCccchHHHHHHHHHhcCCcEEEeeCCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQ-----MPGSLGYEDQDAKTFASWGVDYLKYDNCYN 166 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~-----~pg~~~~~~~~~~~~~~wGvdylK~D~~~~ 166 (397)
++++++++++|+-|||=++-|.....+. .+| ++-+..-++.+.+-|++|=|+.....
T Consensus 122 ~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e~~t~G-LDgL~~R~~~y~~~GarFAKWRsVik 183 (390)
T PLN02425 122 KKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQG-LDGLASRSAEYYKQGARFAKWRTVVS 183 (390)
T ss_pred cCHHHHHHHCCceeeEEecCCCCcCCCCCCCccCCC-hHHHHHHHHHHHHcCCceeehheeec
Confidence 7899999999999999999876544322 122 12223334445555999999988654
No 253
>PRK14057 epimerase; Provisional
Probab=21.38 E-value=4.9e+02 Score=24.90 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCC---------eEEEEeeCCcccc--------------CCCCCC---------ccchHHHHHHHHHhcC
Q 039407 108 IKALADYVHGKGL---------KLGIYSSAGYYTC--------------SKQMPG---------SLGYEDQDAKTFASWG 155 (397)
Q Consensus 108 l~~l~~~i~~~Gl---------k~Giw~~pg~~~c--------------~~~~pg---------~~~~~~~~~~~~~~wG 155 (397)
+..+.++||+.|. |+||=+.|.+... ....|| +...++...+.+.+-|
T Consensus 112 ~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~ 191 (254)
T PRK14057 112 LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKR 191 (254)
T ss_pred HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcC
Confidence 6788899999997 6999999976311 112354 3334444445556777
Q ss_pred CcE-EEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEEe
Q 039407 156 VDY-LKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYSL 193 (397)
Q Consensus 156 vdy-lK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~~ 193 (397)
.++ |-+|+--.. ..+. .+.++|.++++..
T Consensus 192 ~~~~IeVDGGI~~--------~ti~-~l~~aGad~~V~G 221 (254)
T PRK14057 192 EGKIIVIDGSLTQ--------DQLP-SLIAQGIDRVVSG 221 (254)
T ss_pred CCceEEEECCCCH--------HHHH-HHHHCCCCEEEEC
Confidence 765 677774321 1222 3346788888863
No 254
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=21.36 E-value=1e+02 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=25.7
Q ss_pred ceEEEeCCccccCCCCCCCCeeecCCCCC-CcHHHHHHHHHh
Q 039407 77 YIYVNIDDCWGEQDRDEKGNLQARNTTFP-SGIKALADYVHG 117 (397)
Q Consensus 77 y~~i~iDdgW~~~~rd~~G~~~~~~~~FP-~Gl~~l~~~i~~ 117 (397)
|..+.||||+-.. .+..|+..-| -+.| +| .|.++|++
T Consensus 5 YqLidI~DG~lsL-M~e~G~~kdD-l~lP~~~--~l~~~I~~ 42 (75)
T cd04469 5 YRVLDIQDGSIVA-MTETGDVKQG-LPVIDQS--NLWTRLKT 42 (75)
T ss_pred EEEEEecCCeEEE-EcCCCCcccC-ccCCCcc--hHHHHHHH
Confidence 7889999998753 4566777655 3677 54 66666665
No 255
>PRK15108 biotin synthase; Provisional
Probab=21.30 E-value=4.2e+02 Score=26.38 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEEeeCCccccC
Q 039407 55 INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIYSSAGYYTCS 134 (397)
Q Consensus 55 i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~ 134 (397)
++.++|++.|..+.+. |++-|.+=-+|.. | +.++-+-+..+++.|++.|+...+. .
T Consensus 76 ls~eEI~~~a~~~~~~-----G~~~i~i~~~g~~----------p-~~~~~e~i~~~i~~ik~~~i~v~~s--~------ 131 (345)
T PRK15108 76 MEVEQVLESARKAKAA-----GSTRFCMGAAWKN----------P-HERDMPYLEQMVQGVKAMGLETCMT--L------ 131 (345)
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEEecCCC----------C-CcchHHHHHHHHHHHHhCCCEEEEe--C------
Confidence 7899999999987554 4455555334421 1 1222234888899999877654322 2
Q ss_pred CCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 135 KQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 135 ~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
|... ...++.+++.|+|.+-++.
T Consensus 132 ----G~ls--~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 132 ----GTLS--ESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred ----CcCC--HHHHHHHHHcCCCEEeecc
Confidence 2122 5677888999999776655
No 256
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=21.26 E-value=4.8e+02 Score=26.65 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCeEEEE-eeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcC
Q 039407 108 IKALADYVHGKGLKLGIY-SSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTG 186 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw-~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g 186 (397)
++.+++++++.|+++++= +++. .....++...+.|+|||++...+.........+..+++..+...
T Consensus 96 ~~~~i~~a~~~G~~~~~g~~s~~-------------t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~ 162 (430)
T PRK07028 96 IEDAVRAARKYGVRLMADLINVP-------------DPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS 162 (430)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC-------------CHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC
Confidence 577889999999998752 2221 11223566778899999987543211111222333444444445
Q ss_pred CCeEEE
Q 039407 187 RPIYYS 192 (397)
Q Consensus 187 ~~i~~~ 192 (397)
-|++..
T Consensus 163 iPI~a~ 168 (430)
T PRK07028 163 IPIAVA 168 (430)
T ss_pred CcEEEE
Confidence 566554
No 257
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=21.24 E-value=3.1e+02 Score=24.91 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccch----HHHHHHHHHhcCCcEEEeeC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGY----EDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~----~~~~~~~~~~wGvdylK~D~ 163 (397)
++.+.+++++.|+++|+=..+.. ++.... ++..+..-.+.|++.+|+-.
T Consensus 95 l~~~i~~~~~~g~~~~v~~~~~~-------~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~ 147 (215)
T PRK13813 95 LKAVVEAAAESGGKVFVVVEMSH-------PGALEFIQPHADKLAKLAQEAGAFGVVAPA 147 (215)
T ss_pred HHHHHHHHHhcCCeEEEEEeCCC-------CCCCCCHHHHHHHHHHHHHHhCCCeEEECC
Confidence 88999999999999998776632 333333 33344444689999998443
No 258
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=21.21 E-value=3.5e+02 Score=28.27 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCEEEEEEEcCCC-ceEEEEeccccCCCCCCeeEEEEcCCCcccc-------------------eeeeeeEEEEEcCCcE
Q 039407 329 YRIALLLVNRGPW-RYAVTAKWEDIGIPPNSVVEARDLWEHKTLT-------------------KQFVGNLSAMVGSHAC 388 (397)
Q Consensus 329 g~~~va~fN~~~~-~~~~~i~l~~lGl~~~~~~~v~DlWsg~~~~-------------------g~~~g~~~~~L~ph~~ 388 (397)
|...+.+.|.... +..++|++.-+ ..... .-..+-+|.++. ...++.|+.+|+|+++
T Consensus 417 ~~l~i~vvN~~~~d~~~~~i~l~G~--~~a~~-~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S~ 493 (501)
T COG3534 417 GELTIFVVNRALEDALKLNISLNGL--KKAKS-AEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLSV 493 (501)
T ss_pred CeEEEEEEeccccccccceEEeccc--cccce-eeEEEEecCccccccCCCCCCceecccCCCccccCCceeEecCCceE
Confidence 7899999998754 47778877744 32111 111222222211 1223478999999999
Q ss_pred EEEEEEe
Q 039407 389 KMYILKP 395 (397)
Q Consensus 389 ~ll~l~p 395 (397)
.++||.+
T Consensus 494 ~virl~~ 500 (501)
T COG3534 494 SVIRLKL 500 (501)
T ss_pred EEEEEec
Confidence 9999975
No 259
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=21.21 E-value=1.7e+02 Score=29.17 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEE-------EeeCCccccCCCCCC-----
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALADYVHGKGLKLGI-------YSSAGYYTCSKQMPG----- 139 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Gi-------w~~pg~~~c~~~~pg----- 139 (397)
|+++|+++|-|-= |-+... .|....+. ...+++++|+.|||+-| |.+|+.+.-...=.+
T Consensus 33 lk~~G~N~vRlRv-wv~P~~--~g~~~~~~------~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~ 103 (332)
T PF07745_consen 33 LKDHGVNAVRLRV-WVNPYD--GGYNDLED------VIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQ 103 (332)
T ss_dssp HHHTT--EEEEEE--SS-TT--TTTTSHHH------HHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHH
T ss_pred HHhcCCCeEEEEe-ccCCcc--cccCCHHH------HHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHH
Q ss_pred ----ccchHHHHHHHHHhcCCc
Q 039407 140 ----SLGYEDQDAKTFASWGVD 157 (397)
Q Consensus 140 ----~~~~~~~~~~~~~~wGvd 157 (397)
++.|-...++.|++-|+.
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~ 125 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVT 125 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
No 260
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=21.09 E-value=1.6e+02 Score=26.73 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDN 163 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~ 163 (397)
..+++.+|++|+++-.|+--. +. ...++.+.++|||.|=.|+
T Consensus 212 ~~~v~~~~~~g~~v~~wtvn~--------~~-----~~~~~~l~~~gvdgIiTD~ 253 (256)
T PF03009_consen 212 PRLVQEAHKAGLKVYVWTVND--------PD-----VEDMKRLLDLGVDGIITDF 253 (256)
T ss_dssp HHHHHHHHHTT-EEEEBSB-S--------HS-----HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHCCCEEEEEecCC--------cH-----HHHHHHHHhCCCCEEEEcC
Confidence 569999999999998886542 11 4567788899999998886
No 261
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=20.96 E-value=2.2e+02 Score=24.98 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCeEEEEe-eCCc--cccCCCCCCccchHHHHHHHHHhcCCcEE-EeeCCC
Q 039407 108 IKALADYVHGKGLKLGIYS-SAGY--YTCSKQMPGSLGYEDQDAKTFASWGVDYL-KYDNCY 165 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~-~pg~--~~c~~~~pg~~~~~~~~~~~~~~wGvdyl-K~D~~~ 165 (397)
++.+.+..++.|++..+.+ .|-. .......|....-.++-.+.++++||||+ -+||..
T Consensus 25 i~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~ 86 (157)
T PF06574_consen 25 IKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTE 86 (157)
T ss_dssp HHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCC
T ss_pred HHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchH
Confidence 3555666777899988654 3321 11111223444555778889999999984 888874
No 262
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.93 E-value=2e+02 Score=28.42 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=49.9
Q ss_pred CcccCceEEEeCCccccCCCCCCCCee--ecCCCCCCcHHHHHHHHHhCCCeEEE-------EeeCCccccCC-------
Q 039407 72 LAKLGYIYVNIDDCWGEQDRDEKGNLQ--ARNTTFPSGIKALADYVHGKGLKLGI-------YSSAGYYTCSK------- 135 (397)
Q Consensus 72 l~~~Gy~~i~iDdgW~~~~rd~~G~~~--~~~~~FP~Gl~~l~~~i~~~Glk~Gi-------w~~pg~~~c~~------- 135 (397)
||++|++||-|= =|... +|++|.-. -+.+. .++-+++++.+..|||+-+ |.+|+.+....
T Consensus 72 LK~~GvNyvRlR-vwndP-~dsngn~yggGnnD~--~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~f 147 (403)
T COG3867 72 LKNHGVNYVRLR-VWNDP-YDSNGNGYGGGNNDL--KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNF 147 (403)
T ss_pred HHHcCcCeEEEE-EecCC-ccCCCCccCCCcchH--HHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCH
Confidence 588899999884 45543 34333211 11100 1367889999999999875 33443211100
Q ss_pred --CCCCccchHHHHHHHHHhcCCc--EEEeeC
Q 039407 136 --QMPGSLGYEDQDAKTFASWGVD--YLKYDN 163 (397)
Q Consensus 136 --~~pg~~~~~~~~~~~~~~wGvd--ylK~D~ 163 (397)
-+..++.|-+..+++++.-|++ +|.+-.
T Consensus 148 e~lk~avy~yTk~~l~~m~~eGi~pdmVQVGN 179 (403)
T COG3867 148 EQLKKAVYSYTKYVLTTMKKEGILPDMVQVGN 179 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccceEecc
Confidence 0123456667778889988874 444444
No 263
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=20.70 E-value=4.4e+02 Score=25.76 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=54.0
Q ss_pred cccCceEEEeCCccccCCCCCCCCeeecCCCC-----CCcHHHHHHHHHhCC-CeEEEEeeCCccccCCCCCCccchHHH
Q 039407 73 AKLGYIYVNIDDCWGEQDRDEKGNLQARNTTF-----PSGIKALADYVHGKG-LKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 73 ~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~F-----P~Gl~~l~~~i~~~G-lk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
.++|.+.|+|-|-|... ..|+-| |. ++.+++.+|+.| -.+.+++.-+ + ..
T Consensus 187 ieaGad~i~i~d~~~~~---------lsp~~f~ef~~P~-~k~i~~~i~~~~~~~~ilh~cg~------~--------~~ 242 (335)
T cd00717 187 IEAGAQAVQIFDSWAGA---------LSPEDFEEFVLPY-LKRIIEEVKKRLPGVPVILFAKG------A--------GG 242 (335)
T ss_pred HHhCCCEEEEeCccccc---------CCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEcCC------C--------HH
Confidence 34688888876555421 122222 33 799999999984 2233444321 1 14
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEEE
Q 039407 147 DAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYYS 192 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~~ 192 (397)
.++.+++.|++.+-+|+.. .+.++.+..|..+.+.
T Consensus 243 ~~~~~~~~~~~~~s~d~~~-----------dl~e~k~~~g~~~~i~ 277 (335)
T cd00717 243 LLEDLAQLGADVVGLDWRV-----------DLDEARKRLGPKVALQ 277 (335)
T ss_pred HHHHHHhcCCCEEEeCCCC-----------CHHHHHHHhCCCeEEE
Confidence 5788999999999999873 2666667777767665
No 264
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.66 E-value=67 Score=27.23 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=37.8
Q ss_pred cccCCCCCCCceEEechhhhccC------------CCHHHHHHHHHHHHHcCCcccCceEEEeCCcccc
Q 039407 32 LLANGLAETPAMGWNSWNHFWGN------------INEDIIKAAADALVSSGLAKLGYIYVNIDDCWGE 88 (397)
Q Consensus 32 ~~~~g~~~~pp~GwnSW~~~~~~------------i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~ 88 (397)
+.-.|..-+||||-++|-+|... +.|+++....++|.+ .|++..-|=--|-.
T Consensus 30 vt~~G~~~~~~~~l~~~~aF~~~~~G~A~~~Gd~vll~~EV~pvi~aL~~-----~GI~vtAlHNH~l~ 93 (123)
T PF07485_consen 30 VTIDGRRLPPPMGLTSWIAFEPDGDGKAMVMGDFVLLEDEVNPVISALRK-----NGIEVTALHNHWLF 93 (123)
T ss_pred EEECCEEcCCccccceeEEEEECCCCcEEEeecEEecHHHHHHHHHHHHH-----CCceEEEEeccccc
Confidence 33456667899999999777653 679999999999854 55566666656653
No 265
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=20.33 E-value=2.3e+02 Score=25.02 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcC-CcEEEeeCCCC
Q 039407 103 TFPSGIKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWG-VDYLKYDNCYN 166 (397)
Q Consensus 103 ~FP~Gl~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wG-vdylK~D~~~~ 166 (397)
-.|+ +..+++++++.|+++.|.++. . ....++.+.+-| ++++.+|.-..
T Consensus 75 l~~~-l~~li~~~~~~g~~v~i~TNg-----------~---~~~~l~~l~~~g~~~~v~isl~~~ 124 (191)
T TIGR02495 75 LQAG-LPDFLRKVRELGFEVKLDTNG-----------S---NPRVLEELLEEGLVDYVAMDVKAP 124 (191)
T ss_pred CcHh-HHHHHHHHHHCCCeEEEEeCC-----------C---CHHHHHHHHhcCCCcEEEEeccCC
Confidence 3455 899999999999876655432 1 124566677778 69999988754
No 266
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.30 E-value=3.4e+02 Score=26.64 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=53.6
Q ss_pred cccCceEEEeCCccccCCCCCCCCeeecCCCC-----CCcHHHHHHHHHhC-CCeEEEEeeCCccccCCCCCCccchHHH
Q 039407 73 AKLGYIYVNIDDCWGEQDRDEKGNLQARNTTF-----PSGIKALADYVHGK-GLKLGIYSSAGYYTCSKQMPGSLGYEDQ 146 (397)
Q Consensus 73 ~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~F-----P~Gl~~l~~~i~~~-Glk~Giw~~pg~~~c~~~~pg~~~~~~~ 146 (397)
.+.|.+.++|-|-|... ..++-| |. ++.+++.+++. |-.+-+++.- ++ ..
T Consensus 190 ~eaGad~i~i~d~~~~~---------lsp~~f~ef~~p~-~k~i~~~i~~~~~~~~ilh~cg------~~--------~~ 245 (338)
T TIGR01464 190 VKAGAQAVQIFDSWAGA---------LSPEDFEEFVLPY-LKKIIEEVKARLPNVPVILFAK------GA--------GH 245 (338)
T ss_pred HHcCCCEEEEECCcccc---------CCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEeC------Cc--------HH
Confidence 45788888876666431 122222 33 78999999987 4444455543 22 23
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcCCCeEE
Q 039407 147 DAKTFASWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTGRPIYY 191 (397)
Q Consensus 147 ~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g~~i~~ 191 (397)
.++.+++.|++.+-+|++.. +.++.+..|..+.+
T Consensus 246 ~~~~~~~~~~~~~s~d~~~d-----------l~e~~~~~~~~~~i 279 (338)
T TIGR01464 246 LLEELAETGADVVGLDWTVD-----------LKEARKRVGPGVAI 279 (338)
T ss_pred HHHHHHhcCCCEEEeCCCCC-----------HHHHHHHhCCCeeE
Confidence 46778999999999998632 56777777765444
No 267
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=20.15 E-value=2.6e+02 Score=23.18 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCccccCCCCCCCCeeecCCCCCCcHHHHH
Q 039407 56 NEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQDRDEKGNLQARNTTFPSGIKALA 112 (397)
Q Consensus 56 ~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~ 112 (397)
+.+.+.-.-.+|.++.|-..+.+||+-|+-=.- ....+|+..++ .||.+||.+.+
T Consensus 58 ~~~~~~~i~~AL~A~~l~~rd~dYiV~dg~V~I-VDe~TGR~m~g-Rrws~GLHQaI 112 (113)
T PF01043_consen 58 NSELYHHINQALKAHHLFKRDVDYIVRDGEVVI-VDEFTGRIMPG-RRWSDGLHQAI 112 (113)
T ss_dssp CHHHHHHHHHHHHHHHCSTTTTSEEEETTEEEE-BCTTTTSEBTT---STTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcceEEEcCEEEE-EECCCCCcCCC-CcCCchhhHhh
Confidence 334455555556565666678899987653221 12348999988 69999998875
No 268
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.12 E-value=1.8e+02 Score=28.88 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=41.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCcccCceEEEeCCccccCC-CCCCCCeeecCCCCCCcHHHHHHHHHhCCCeEEEE
Q 039407 53 GNINEDIIKAAADALVSSGLAKLGYIYVNIDDCWGEQD-RDEKGNLQARNTTFPSGIKALADYVHGKGLKLGIY 125 (397)
Q Consensus 53 ~~i~e~~i~~~ad~l~~~gl~~~Gy~~i~iDdgW~~~~-rd~~G~~~~~~~~FP~Gl~~l~~~i~~~Glk~Giw 125 (397)
..+|++.+.-..+. ..-|...|+....+-... +-..+.+....+.+=.+++.|++.+|+.|-++.+=
T Consensus 29 G~~t~~~~~~y~~~------A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Q 96 (343)
T cd04734 29 GLPSERYIAYHEER------ARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQ 96 (343)
T ss_pred CCCCHHHHHHHHHH------HhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 46788888776664 334566677665554321 11122233333445457999999999999887643
No 269
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=20.11 E-value=4.7e+02 Score=24.42 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCCCCCCccchHHHHHHHHH-hcCCcEEEeeCCCCCCCCccchHHHHHHHHHhcC
Q 039407 108 IKALADYVHGKGLKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFA-SWGVDYLKYDNCYNDGSKPMDRYPVMTRALMNTG 186 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~-~wGvdylK~D~~~~~~~~~~~~y~~m~~al~~~g 186 (397)
.+.+...++..|+|+| .|.+..+....++...|++..++... .+-||+|-+-.= ..+.......+.+..++.|
T Consensus 92 w~~~~~~~~~~~~~l~---sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~iavH~Y---~~~~~~~~~~i~~~~~~~~ 165 (239)
T PF11790_consen 92 WKQYMNPLRSPGVKLG---SPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFIAVHWY---GGDADDFKDYIDDLHNRYG 165 (239)
T ss_pred HHHHHhHhhcCCcEEE---CCeecccCCCCCCccHHHHHHHHhcccCCCccEEEEecC---CcCHHHHHHHHHHHHHHhC
Confidence 4555555666788887 55443333223556778888887766 555555444322 1122222333555556788
Q ss_pred CCeEEEe
Q 039407 187 RPIYYSL 193 (397)
Q Consensus 187 ~~i~~~~ 193 (397)
+||.+-.
T Consensus 166 kPIWITE 172 (239)
T PF11790_consen 166 KPIWITE 172 (239)
T ss_pred CCEEEEe
Confidence 9998863
No 270
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=20.05 E-value=1.6e+02 Score=28.18 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=28.2
Q ss_pred CeEEEEeeCCccccCCCCCCccchHHHHHHHHHhcCCcEEEeeCCC
Q 039407 120 LKLGIYSSAGYYTCSKQMPGSLGYEDQDAKTFASWGVDYLKYDNCY 165 (397)
Q Consensus 120 lk~Giw~~pg~~~c~~~~pg~~~~~~~~~~~~~~wGvdylK~D~~~ 165 (397)
||||+++.+....-....+..+......++...+.|||.+-+.--.
T Consensus 1 Mkfg~~~~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gfd~~w~~eh~ 46 (307)
T PF00296_consen 1 MKFGIFLPPEFGPDRPSAQQPLDELVELAQLAEELGFDSVWVSEHH 46 (307)
T ss_dssp -EEEEEESTTTTTSSTCSCSHHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred CeEEEEeCCcCCCCCccccCCHHHHHHHHHHHHHcCCCEEEecccC
Confidence 7999999875422221212244555667777889999999887643
No 271
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=20.02 E-value=2.5e+02 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.003 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCcc--ccCCCCCCccchHHHHHHHHHhc-CCcEEEeeCCC
Q 039407 109 KALADYVHGKGLKLGIYSSAGYY--TCSKQMPGSLGYEDQDAKTFASW-GVDYLKYDNCY 165 (397)
Q Consensus 109 ~~l~~~i~~~Glk~Giw~~pg~~--~c~~~~pg~~~~~~~~~~~~~~w-GvdylK~D~~~ 165 (397)
..+++.+|++|+++-.|+-.... .+..+ .........+.+..+ |||.|=.|+-.
T Consensus 241 ~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~---~~~~~~~~~~~~~~~~gVDGiiTD~P~ 297 (302)
T cd08571 241 TSVVQDAHKAGLEVYVSGFANEFVSLAYDY---SADPTLEILSFVGNGNSVDGVITDFPA 297 (302)
T ss_pred cHHHHHHHHcCCEEEEEEEecCcccccccc---cCCHHHHHHHHHHhcCCCCEEEecCch
Confidence 48899999999999999853210 01000 112223344556666 99999999853
No 272
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=20.00 E-value=98 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCeEEEEee--CCccccCCCCCCccchHHHHH
Q 039407 108 IKALADYVHGKGLKLGIYSS--AGYYTCSKQMPGSLGYEDQDA 148 (397)
Q Consensus 108 l~~l~~~i~~~Glk~Giw~~--pg~~~c~~~~pg~~~~~~~~~ 148 (397)
|..|.+.+++.|+..-+|+. ||+.||....|+-..-++...
T Consensus 68 L~~L~~~a~~~gi~~~l~te~p~gt~T~LaigP~~~~~id~it 110 (116)
T cd02429 68 LKNLSSKLTENSIKHKLWIEQPENIPTCIALKPYPKETVASYL 110 (116)
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCCCceEEEeCCCCHHHHHHHh
Confidence 89999999999999999986 688899876676555444443
Done!