Query 039409
Match_columns 224
No_of_seqs 315 out of 1278
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00380 AP2 DNA-binding dom 99.9 1.3E-21 2.8E-26 140.3 6.8 63 84-147 1-63 (64)
2 cd00018 AP2 DNA-binding domain 99.8 1.7E-21 3.8E-26 137.9 6.8 60 83-143 1-60 (61)
3 PHA00280 putative NHN endonucl 99.5 1.1E-13 2.3E-18 112.2 6.8 59 76-138 60-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.3 1.1E-11 2.4E-16 85.6 6.2 53 83-135 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 83.4 4.2 9.2E-05 27.1 5.3 38 95-132 1-41 (46)
6 PHA02601 int integrase; Provis 75.5 4.6 9.9E-05 35.8 4.5 45 87-132 2-46 (333)
7 PF05036 SPOR: Sporulation rel 51.2 7.9 0.00017 26.6 1.0 23 107-129 43-65 (76)
8 PF08846 DUF1816: Domain of un 44.2 48 0.001 24.7 4.3 31 94-125 8-38 (68)
9 cd00801 INT_P4 Bacteriophage P 39.6 61 0.0013 28.2 5.0 40 93-133 9-50 (357)
10 PF08471 Ribonuc_red_2_N: Clas 36.9 34 0.00074 27.1 2.6 20 113-132 71-90 (93)
11 PF14112 DUF4284: Domain of un 35.9 26 0.00057 28.1 2.0 64 108-173 2-69 (122)
12 COG0197 RplP Ribosomal protein 33.8 67 0.0015 27.3 4.1 37 95-135 95-131 (146)
13 PRK09692 integrase; Provisiona 25.8 1.9E+02 0.0041 26.8 6.1 43 88-130 33-80 (413)
14 PRK09203 rplP 50S ribosomal pr 21.9 1.4E+02 0.003 24.7 3.9 36 95-134 92-127 (138)
15 PF13356 DUF4102: Domain of un 21.6 3.3E+02 0.0072 20.0 5.6 34 94-128 35-70 (89)
16 TIGR01164 rplP_bact ribosomal 20.9 1.7E+02 0.0037 23.8 4.2 35 94-132 90-124 (126)
17 CHL00044 rpl16 ribosomal prote 20.8 1.6E+02 0.0035 24.3 4.1 36 95-134 92-127 (135)
18 PF12286 DUF3622: Protein of u 20.7 1.9E+02 0.0041 21.9 4.0 31 93-123 15-48 (71)
No 1
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.85 E-value=1.3e-21 Score=140.31 Aligned_cols=63 Identities=67% Similarity=1.129 Sum_probs=59.2
Q ss_pred ceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCChhhHH
Q 039409 84 SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQ 147 (224)
Q Consensus 84 ~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~~~y~ 147 (224)
+|+||+++++|||.|+|+++. +|+++|||+|+|+||||.|||.|+++++|..+.+|||.++|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599999999999999999964 489999999999999999999999999999999999999885
No 2
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.85 E-value=1.7e-21 Score=137.87 Aligned_cols=60 Identities=68% Similarity=1.202 Sum_probs=56.6
Q ss_pred CceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCCh
Q 039409 83 KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPV 143 (224)
Q Consensus 83 S~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~ 143 (224)
|+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|..+.+|||.
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~ 60 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence 6899999999999999999954 28999999999999999999999999999999999996
No 3
>PHA00280 putative NHN endonuclease
Probab=99.46 E-value=1.1e-13 Score=112.19 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCCCCCCceeEeEeCC-CCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCC
Q 039409 76 EENPTKEKSYRGVRRRP-WGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAI 138 (224)
Q Consensus 76 ~~~~~~~S~yRGVr~r~-~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~ 138 (224)
..++.++|+|+||++++ .|||+|+|+. +|++++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus 60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 60 KTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 44667899999999877 5999999998 699999999999999999997 77889998874
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.27 E-value=1.1e-11 Score=85.59 Aligned_cols=53 Identities=30% Similarity=0.427 Sum_probs=46.7
Q ss_pred CceeEeEeCC-CCcEEEEEeeCCCCC--eEEeecCCCcHHHHHHHHHHHHHhccCC
Q 039409 83 KSYRGVRRRP-WGKFAAEIRDSTRHG--IRVWLGTFDSAEAAALAYDQAAFSMRGS 135 (224)
Q Consensus 83 S~yRGVr~r~-~GKW~A~I~~~~~~G--krv~LGtFdT~EeAArAYD~AA~~~~G~ 135 (224)
|+|+||++++ .++|.|+|++...+| +.++||.|++++||++||+.++..++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999887 599999999954444 8999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=83.41 E-value=4.2 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=28.7
Q ss_pred cEEEEEe--eC-CCCCeEEeecCCCcHHHHHHHHHHHHHhc
Q 039409 95 KFAAEIR--DS-TRHGIRVWLGTFDSAEAAALAYDQAAFSM 132 (224)
Q Consensus 95 KW~A~I~--~~-~~~Gkrv~LGtFdT~EeAArAYD~AA~~~ 132 (224)
+|...|. ++ +.+-++++-+.|.|..||-.+...+...+
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 5888883 32 33336788999999999999988876655
No 6
>PHA02601 int integrase; Provisional
Probab=75.50 E-value=4.6 Score=35.83 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred EeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhc
Q 039409 87 GVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSM 132 (224)
Q Consensus 87 GVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~ 132 (224)
+|++.+.|+|.++++.....|+++. .+|.|..||-...+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 5677778999999986323477665 36999988876666554444
No 7
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=51.17 E-value=7.9 Score=26.64 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=18.9
Q ss_pred CeEEeecCCCcHHHHHHHHHHHH
Q 039409 107 GIRVWLGTFDSAEAAALAYDQAA 129 (224)
Q Consensus 107 Gkrv~LGtFdT~EeAArAYD~AA 129 (224)
.-+|.+|.|++.++|..+-.+..
T Consensus 43 ~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 43 WYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp CEEEEECCECTCCHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHh
Confidence 45799999999999988877655
No 8
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=44.16 E-value=48 Score=24.73 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=23.9
Q ss_pred CcEEEEEeeCCCCCeEEeecCCCcHHHHHHHH
Q 039409 94 GKFAAEIRDSTRHGIRVWLGTFDSAEAAALAY 125 (224)
Q Consensus 94 GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAY 125 (224)
-.|-++|.-..= .-..|.|-|+|.+||..+.
T Consensus 8 laWWveI~T~~P-~ctYyFGPF~s~~eA~~~~ 38 (68)
T PF08846_consen 8 LAWWVEIETQNP-NCTYYFGPFDSREEAEAAL 38 (68)
T ss_pred CcEEEEEEcCCC-CEEEEeCCcCCHHHHHHHh
Confidence 358889886321 3678999999999999873
No 9
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=39.60 E-value=61 Score=28.24 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCcEEEEEeeCCCCCeEEeecCCC--cHHHHHHHHHHHHHhcc
Q 039409 93 WGKFAAEIRDSTRHGIRVWLGTFD--SAEAAALAYDQAAFSMR 133 (224)
Q Consensus 93 ~GKW~A~I~~~~~~Gkrv~LGtFd--T~EeAArAYD~AA~~~~ 133 (224)
.+.|..+++...+ .+++.||+|+ +.++|..+.......+.
T Consensus 9 ~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 9 SKSWRFRYRLAGK-RKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred CEEEEEEeccCCc-eeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3569999888432 3567899996 66777766666555543
No 10
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=36.93 E-value=34 Score=27.08 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.8
Q ss_pred cCCCcHHHHHHHHHHHHHhc
Q 039409 113 GTFDSAEAAALAYDQAAFSM 132 (224)
Q Consensus 113 GtFdT~EeAArAYD~AA~~~ 132 (224)
|.|+|+|+|..-||..+..|
T Consensus 71 GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 71 GYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999977654
No 11
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=35.86 E-value=26 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.347 Sum_probs=33.1
Q ss_pred eEEeecCCCcHHHHHHHHHHHHHhccCC----CCCCCCChhhHHHHHhhcccCCCCCCchhhhhhhcccc
Q 039409 108 IRVWLGTFDSAEAAALAYDQAAFSMRGS----SAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSM 173 (224)
Q Consensus 108 krv~LGtFdT~EeAArAYD~AA~~~~G~----~A~lNFP~~~y~~~l~~l~~~~~~~~s~v~~l~Rr~s~ 173 (224)
..||||+|.|.++-..=.+. -..--|. .-...|-...|.+.+.++...... ..++-.|....|.
T Consensus 2 VsiWiG~f~s~~el~~Y~e~-~Ydedgd~i~s~F~~df~i~~yDeDfie~~~~~~~-~~~l~~ll~~~Sy 69 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYFEI-DYDEDGDSIPSQFCKDFGIDYYDEDFIEIIFYEES-EVSLEELLEGFSY 69 (122)
T ss_pred eEEEEecCCCHHHHHHHhCc-cccCCCCcccChHHHHcCCCccCchhcEEEEccCC-ccCHHHHHhcCCc
Confidence 46999999998876655443 1101122 112445555666666555443322 2234455544444
No 12
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=33.80 E-value=67 Score=27.28 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=31.0
Q ss_pred cEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCC
Q 039409 95 KFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGS 135 (224)
Q Consensus 95 KW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~ 135 (224)
-|+|.|.. |+.++-=..+.++.|..|.-+|+.++=+.
T Consensus 95 gwaArVkp----G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVKP----GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEecC----CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 39999987 78788777888999999999999987544
No 13
>PRK09692 integrase; Provisional
Probab=25.83 E-value=1.9e+02 Score=26.78 Aligned_cols=43 Identities=7% Similarity=0.038 Sum_probs=25.0
Q ss_pred eEeCCCC--cEEEEEeeCC-CCCeEEeecCCC--cHHHHHHHHHHHHH
Q 039409 88 VRRRPWG--KFAAEIRDST-RHGIRVWLGTFD--SAEAAALAYDQAAF 130 (224)
Q Consensus 88 Vr~r~~G--KW~A~I~~~~-~~Gkrv~LGtFd--T~EeAArAYD~AA~ 130 (224)
|+-++.| .|..+-+.+. .+.+++-||.|+ |..+|..+-..+..
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~ 80 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRS 80 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHH
Confidence 4445554 4998877532 222336899999 66666554444333
No 14
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=21.86 E-value=1.4e+02 Score=24.68 Aligned_cols=36 Identities=22% Similarity=0.037 Sum_probs=28.0
Q ss_pred cEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccC
Q 039409 95 KFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRG 134 (224)
Q Consensus 95 KW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G 134 (224)
-|+|.|.. |+-++--.-.+++.|..|..+|+.++=+
T Consensus 92 ~~varVk~----G~iifEi~~~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 92 YWVAVVKP----GRILFEIAGVSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEEECC----CCEEEEEeCCCHHHHHHHHHHHhccCCC
Confidence 49999997 5655544448999999999999987744
No 15
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=21.61 E-value=3.3e+02 Score=19.97 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=21.1
Q ss_pred CcEEEEEeeCCCCCeEEeecCCCc--HHHHHHHHHHH
Q 039409 94 GKFAAEIRDSTRHGIRVWLGTFDS--AEAAALAYDQA 128 (224)
Q Consensus 94 GKW~A~I~~~~~~Gkrv~LGtFdT--~EeAArAYD~A 128 (224)
..|..+.+... +-+++-||.|+. ..+|.......
T Consensus 35 kt~~~r~~~~g-k~~~~~lG~~p~~sl~~AR~~a~~~ 70 (89)
T PF13356_consen 35 KTFYFRYRING-KRRRITLGRYPELSLAEAREKAREL 70 (89)
T ss_dssp EEEEEEEEETT-EEEEEEEEECTTS-HHHHHHHHHHH
T ss_pred eEEEEEEEecc-eEEEeccCCCccCCHHHHHHHHHHH
Confidence 35888887632 235789999986 44444444333
No 16
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=20.91 E-value=1.7e+02 Score=23.82 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=27.3
Q ss_pred CcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhc
Q 039409 94 GKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSM 132 (224)
Q Consensus 94 GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~ 132 (224)
--|+|.|.. |+-++--.-.+++.|-.|..+|+.++
T Consensus 90 ~~~varV~~----G~ilfEi~~~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 90 EYWVAVVKP----GKILFEIAGVPEEVAREAFRLAASKL 124 (126)
T ss_pred CEEEEEECC----CCEEEEEeCCCHHHHHHHHHHHHhcC
Confidence 349999997 66555444489999999999998875
No 17
>CHL00044 rpl16 ribosomal protein L16
Probab=20.84 E-value=1.6e+02 Score=24.28 Aligned_cols=36 Identities=22% Similarity=0.099 Sum_probs=26.9
Q ss_pred cEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccC
Q 039409 95 KFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRG 134 (224)
Q Consensus 95 KW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G 134 (224)
-|+|.|.. |+-++=-.-.+++.|..|...|+.++=+
T Consensus 92 ~~va~V~~----G~ilfEi~g~~~~~ak~al~~a~~KLP~ 127 (135)
T CHL00044 92 YWVAVVKP----GRILYEMGGVSETIARAAIKIAAYKMPI 127 (135)
T ss_pred EEEEEECC----CcEEEEEeCCCHHHHHHHHHHHhhcCCC
Confidence 49999997 6655544446678999999999887643
No 18
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=20.69 E-value=1.9e+02 Score=21.94 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCcEEEEEeeCCCCCeEEe---ecCCCcHHHHHH
Q 039409 93 WGKFAAEIRDSTRHGIRVW---LGTFDSAEAAAL 123 (224)
Q Consensus 93 ~GKW~A~I~~~~~~Gkrv~---LGtFdT~EeAAr 123 (224)
.+.|.|+|.--....+.+- --.|+|+++|..
T Consensus 15 ~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~ 48 (71)
T PF12286_consen 15 RNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQA 48 (71)
T ss_pred CCceeeeeeeeecCceeEEEecccCcccHHHHHH
Confidence 3679999985332222221 156999988654
Done!