BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039410
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 176/308 (57%), Gaps = 11/308 (3%)
Query: 12 LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
L+ FY +CP E ++ + A G +R+ FHDCFV GCDASVL+ S+ N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 72 KAERDSEINLSLPGD----GYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPR 127
AE+D+ +P + G+EV AK A+E CP VSCADI+A A RD +LAG
Sbjct: 62 TAEKDA-----IPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNIT 116
Query: 128 WEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHC 187
++VP GRRDG +S AS +P +Q I+ F +K L+ +MV LSG H+IG +HC
Sbjct: 117 YQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHC 176
Query: 188 KEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCP-KSKKLDPTVVALNDVSTPFVFDNFYY 246
F R+Y++N IDPT++ +A LR +CP S + P V+L D+ TP V DN YY
Sbjct: 177 SSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSL-DIITPSVLDNMYY 235
Query: 247 KNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ LGLL +DQ L+ ++ A VK A TA+ F AM+K+ I V TG GEI
Sbjct: 236 TGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI 295
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 296 RTNCSVVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 176/307 (57%), Gaps = 5/307 (1%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY TCPN I+ + Q L A +R+ FHDCFV GCDAS+L+ + +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
++E+++ N++ G+ V K ALE CPG+VSC+D++A+A+ V LAGGP W V
Sbjct: 62 IQSEKNAGPNVN-SARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEF 190
GRRD L + + ++P +++S F + GL+T D+VALSG HT G + C F
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 191 MPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIK 250
R+++++ T + DPT+N +L+ CP++ T+ L D+STP FDN Y+ N++
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSAS-TITNL-DLSTPDAFDNNYFANLQ 238
Query: 251 KGLGLLATDQMLL--LDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRR 308
GLL +DQ L S T A V A +T FF+ F +MI + NI TG +GEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 309 DCGSFNG 315
DC NG
Sbjct: 299 DCKKVNG 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDM--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 177/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGH+ G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 179/307 (58%), Gaps = 5/307 (1%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY++TCPN+ I++ V P A +R+ FHDCFV+GCD SVL+ ++ T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
++E+D+ N++ G +V K A+E CP VSCADI+AIA L GGP W V
Sbjct: 61 IESEQDALPNIN-SIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEF 190
P GRRD L + + NLP ++Q + F +GL+TLD+V LSGGHT G + C F
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 191 MPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIK 250
+ R+Y+++ T + DPT+N + LR CP++ D + L D+STP FDN YY N+
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGD-NLTNL-DLSTPDQFDNRYYSNLL 237
Query: 251 KGLGLLATDQMLLLD--SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRR 308
+ GLL +DQ L + T V + + FF +F V+MIK+ NIGV TG +GEIR
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRL 297
Query: 309 DCGSFNG 315
C NG
Sbjct: 298 QCNFVNG 304
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 176/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ FHDCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VAL GGHT G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 176/308 (57%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA LR+ F DCFV GCDAS+L+ ++ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 299 RLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 7/308 (2%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L FY +CPNV I+ + +L P AA L + F DCFV GCDAS+L+ ++ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 71 NKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
+ E+D+ N + G+ V R K A+E CP VSCAD++ IA + V LAGGP W V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLS-TLDMVALSGGHTIGFSHCKE 189
P GRRD L + NLP T+ Q F++ GL+ + D+VALSGGHT G + C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
M R+Y+++ T DPT+N + ++LRG CP + L V D+ TP +FDN YY N+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF--DLRTPTIFDNKYYVNL 237
Query: 250 KKGLGLLATDQMLLLD---SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
++ GL+ +DQ L + T V+ A++ FF FV AM ++ NI TG G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 307 RRDCGSFN 314
R +C N
Sbjct: 298 RLNCRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 169/306 (55%), Gaps = 5/306 (1%)
Query: 12 LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
L FY TCPN ++ + Q A +R+ FHDCFV GCDAS+L+ +S +
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 72 KAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVP 131
+E+++ N + G+ V K ALE CPG+VSC D++A+A++ V L+GGP W V
Sbjct: 64 ISEKNAGPNAN-SARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 132 KGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFM 191
GRRD L + + ++P Q +S S F + GL+T D+VALSG HT G + C F
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 192 PRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKK 251
R+++++ + DPT+N +L+ CP+ + + D+STP FDN Y+ N++
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL--DLSTPDAFDNNYFTNLQS 240
Query: 252 GLGLLATDQMLL--LDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRD 309
GLL +DQ L S T A V A +T FF+ F +MI + NI TG GEIR D
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 310 CGSFNG 315
C NG
Sbjct: 301 CKKTNG 306
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 172/310 (55%), Gaps = 10/310 (3%)
Query: 7 PCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIA 66
P L DFY +TCP E I+ + + + AAG LR+ FHDCFV+GCDASVL+
Sbjct: 4 PVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLD 63
Query: 67 SSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPG-IVSCADIMAIATRDLVHLAGG 125
S T E+ + NL+L ++ + LE +C G +VSC+DI+A+A RD V ++GG
Sbjct: 64 GSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGG 123
Query: 126 PRWEVPKGRRDGL-ISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGF 184
P + VP GRRD + V +LP + + ++L GL D+V +SGGHTIG
Sbjct: 124 PDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGL 183
Query: 185 SHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNF 244
+HC F R++ DPT++ F L+ +CP TV+ DV TP VFDN
Sbjct: 184 AHCSSFEDRLFPRP-----DPTISPTFLSRLKRTCPAKGTDRRTVL---DVRTPNVFDNK 235
Query: 245 YYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDG 304
YY ++ GL +DQ L ++ TR V+R A ++ FF+ F V++ K+ + V+T G
Sbjct: 236 YYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQG 295
Query: 305 EIRRDCGSFN 314
E+RR+C N
Sbjct: 296 EVRRNCSVRN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 158/302 (52%), Gaps = 16/302 (5%)
Query: 12 LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
L +FY CPN I + + + + A LR+ FHDCFV+GCDASVL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 72 KAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVP 131
E+ + N + G+EV K +E CPG+VSCADI+A+A RD V GG W V
Sbjct: 62 TGEKTAGPNAN-SIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVL 120
Query: 132 KGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFM 191
GRRD + S +LP +S IS F +KG +T ++V LSG HTIG + C F
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 192 PRIYSYNKTHDIDPTMNQDFARSLRGSCPK---SKKLDPTVVALNDVSTPFVFDNFYYKN 248
RIY +IDPT +A+SL+ +CP L P DV+TP FDN YY N
Sbjct: 181 TRIY---NESNIDPT----YAKSLQANCPSVGGDTNLSPF-----DVTTPNKFDNAYYIN 228
Query: 249 IKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRR 308
++ GLL +DQ L T + V ++ F F AMIK+ N+ TG G+IR
Sbjct: 229 LRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRT 288
Query: 309 DC 310
+C
Sbjct: 289 NC 290
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 21/312 (6%)
Query: 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT 70
+L D Y K+CPN+ +I+ + L AA +R+ FHDCFV GCDAS+L+ + +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 71 NKAERDSEINLSLP----GDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGP 126
K L++P G+EV K A+E CPG+VSCADI+ +A RD V L+GGP
Sbjct: 61 EK--------LAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGP 112
Query: 127 RWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSH 186
W V GR+DGL++ + NLP + + I+ F + L+ D+VALSG HT G +
Sbjct: 113 GWRVALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAK 171
Query: 187 CKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYY 246
C F R++++ + D T+ +L+ CP + + A D ST FDN Y+
Sbjct: 172 CAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGG--NSNITAPLDRSTTDTFDNNYF 229
Query: 247 KNIKKGLGLLATDQML----LLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGK 302
KN+ +G GLL++DQ+L L + T+ V+ + +++ FF+ F AMI++ NI G
Sbjct: 230 KNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI--SNGA 287
Query: 303 DGEIRRDCGSFN 314
GE+R +C N
Sbjct: 288 SGEVRTNCRVIN 299
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 88/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R ++ Q P IVS AD +A V + GGP GR D
Sbjct: 71 NGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGRED---KPEPPP 126
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GLS D+VALSGGHTIG +H +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKER--------------- 171
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K GL L +D+
Sbjct: 172 --------SGFEGPW---------------TSNPLIFDNSYFTELLTGEKDGLLQLPSDK 208
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL DS R V++ A + FF + A +KLS +G
Sbjct: 209 ALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 88/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---------------- 182
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
A G S P +FDN Y+ + K+GL L +D+
Sbjct: 183 -------ASGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 171
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 172 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 208
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 171
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 172 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 208
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 171
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 172 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 208
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 126
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 171
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 172 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 208
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 209 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 47/217 (21%)
Query: 86 DGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRV 145
+G ++ R L+ + P I+S AD +A V + GGP GR D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPP 138
Query: 146 EGNLPHVNQTISQTISLF-KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID 204
EG LP + +F K+ GL+ D+VALSGGHTIG +H +
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKER--------------- 183
Query: 205 PTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI----KKGLGLLATDQ 260
G S P +FDN Y+ + K+GL L +D+
Sbjct: 184 --------SGFEGPW---------------TSNPLIFDNSYFTELLSGEKEGLLQLPSDK 220
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297
LL D R V + A + AFF + A KLS +G
Sbjct: 221 ALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQ-TISQTI-SLF 163
V+ AD+ +A+ + AGGP+ + GR D + EG LP + +Q + +F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 164 KSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSK 223
GL+ ++VALSG HT+G S P + K K
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSR-----PDRSGWGKPET------------------KYT 183
Query: 224 KLDPTVVALNDVSTPFV-FDNFYYKNIKK----GLGLLATDQMLLLDSRTRAYVKRMADA 278
K P + ++ FDN Y+K+IK+ L +L TD L D + Y ++ A
Sbjct: 184 KDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 279 KTAFFKHFVVAMIKLSNIGVKTG 301
AFFK + A KLSN+G K G
Sbjct: 244 PEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 91/216 (42%), Gaps = 23/216 (10%)
Query: 87 GYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVE 146
G ++ +A L+ + P I S AD+ +A + GGP GR D +
Sbjct: 68 GLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 147 GNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPT 206
G LP ++T S +F+ G + + VAL G HT G +H EF Y THD +
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHI-EF--SGYHGPWTHDKNGF 183
Query: 207 MNQDFARSLRGSCPKSKKLDPTV--VALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLL 264
N F + L + L+P V + L D +T L +L +D LLL
Sbjct: 184 DNSFFTQLLD----EDWVLNPKVEQMQLMDRAT-------------TKLMMLPSDVCLLL 226
Query: 265 DSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKT 300
D R YV+ A F K F A KL+ +G +
Sbjct: 227 DPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRN 262
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 90/216 (41%), Gaps = 23/216 (10%)
Query: 87 GYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVE 146
G ++ +A L+ + P I S AD+ +A + GGP GR D +
Sbjct: 67 GLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 125
Query: 147 GNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPT 206
G LP ++T S +F+ G + + VAL G HT G H EF Y THD +
Sbjct: 126 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EF--SGYHGPWTHDKNGF 182
Query: 207 MNQDFARSLRGSCPKSKKLDPTV--VALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLL 264
N F + L + L+P V + L D +T L +L +D LLL
Sbjct: 183 DNSFFTQLLD----EDWVLNPKVEQMQLMDRAT-------------TKLMMLPSDVCLLL 225
Query: 265 DSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKT 300
D R YV+ A F K F A KL+ +G +
Sbjct: 226 DPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRN 261
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 90/216 (41%), Gaps = 23/216 (10%)
Query: 87 GYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVE 146
G ++ +A L+ + P I S AD+ +A + GGP GR D +
Sbjct: 68 GLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 147 GNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPT 206
G LP ++T S +F+ G + + VAL G HT G H EF Y THD +
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHI-EF--SGYHGPWTHDKNGF 183
Query: 207 MNQDFARSLRGSCPKSKKLDPTV--VALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLL 264
N F + L + L+P V + L D +T L +L +D LLL
Sbjct: 184 DNSFFTQLLD----EDWVLNPKVEQMQLMDRAT-------------TKLMMLPSDVCLLL 226
Query: 265 DSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKT 300
D R YV+ A F K F A KL+ +G +
Sbjct: 227 DPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRN 262
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTM-NQDFARSLRGSCPKSKK 224
++ ++VAL G HT+G +H K Y +P + + F +L K +K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKN-----SGYEGPWTANPNVFDNSFYLNLLNEDWKLEK 215
Query: 225 LDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFK 284
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 216 NDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 285 HFVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 261 DFSKAFEKLLENGITFPKD 279
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 22/199 (11%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-IDPTMNQDFARSLRGSCPKSKK 224
++ ++VAL G HT+G +H K Y D + + F +L K +K
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKN-----SGYEGPWDATNNVFDNSFYLNLLNEDWKLEK 215
Query: 225 LDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFK 284
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 216 NDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 285 HFVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 261 DFSKAFEKLLENGITFPKD 279
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 58/217 (26%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VALSG HT+G +H K N ++ T N +
Sbjct: 161 LNMNDREVVALSGAHTLGKTHLK---------NSGYEGPWTANNN--------------- 196
Query: 226 DPTVVALNDVSTPFVFDNFYYKNI-------------------KKGLGLLATDQMLLLDS 266
VFDN +Y N+ K G L TD L+ D
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 267 RTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKD 303
+ + VK A+ + FFK F A KL G+ KD
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 78/217 (35%), Gaps = 58/217 (26%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G HT+G +H K N ++ T N +
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK---------NSGYEGPWTANNN--------------- 196
Query: 226 DPTVVALNDVSTPFVFDNFYYKNI-------------------KKGLGLLATDQMLLLDS 266
VFDN +Y N+ K G +L TD L+ D
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 267 RTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKD 303
+ + VK A+ + FFK F A KL G+ KD
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 22/198 (11%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K S + + +F +L K +K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKN------SGYEGGGANNVFTNEFYLNLLNEDWKLEKN 211
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 212 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 256
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 257 FSKAFEKLLENGITFPKD 274
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 58/217 (26%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G HT+G +H K N ++ T N +
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK---------NSGYEGPWTANNN--------------- 196
Query: 226 DPTVVALNDVSTPFVFDNFYYKNI-------------------KKGLGLLATDQMLLLDS 266
VFDN +Y N+ K G L TD L+ D
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 267 RTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKD 303
+ + VK A+ + FFK F A KL G+ KD
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 279
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 22/198 (11%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K S + + +F +L K +K
Sbjct: 159 LNMNDREVVALMGAHALGKTHLKN------SGYEGGGANNVFTNEFYLNLLNEDWKLEKN 212
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 213 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 257
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 258 FSKAFEKLLENGITFPKD 275
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 22/198 (11%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K Y +++ +F +L K +K
Sbjct: 164 LNMNDREVVALMGAHALGKTHLKN---SGYEGGGANNV---FTNEFYLNLLNEDWKLEKN 217
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 218 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 262
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 263 FSKAFEKLLENGITFPKD 280
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGCANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNENWKLEKN 216
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 217 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 262 FSKAFEKLLENGITFPKD 279
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYS--YNKTHDIDPTMNQDFARSLRGSCPKSK 223
++ ++VAL G H +G +H K Y Y +++ +F +L K +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKN---SGYEGPYGAANNV---FTNEFYLNLLNEDWKLE 211
Query: 224 KLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFF 283
K D + K G +L TD L+ D + + VK A+ + FF
Sbjct: 212 KNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 256
Query: 284 KHFVVAMIKLSNIGVKTGKD 303
K F A KL G+ KD
Sbjct: 257 KDFSKAFEKLLEDGITFPKD 276
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNENWKLEKN 218
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 219 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 264 FSKAFEKLLENGITFPKD 281
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKN 213
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 214 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 259 FSKAFEKLLENGITFPKD 276
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKN 218
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 219 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 264 FSKAFEKLLENGITFPKD 281
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNCFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALKGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLENGITFPKD 276
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 26/201 (12%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFM---PRIYSYNKTHDIDPTMNQDFARSLRGSCPKS 222
++ ++VAL G H +G +H K P+ + N +F +L K
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANN-------VFTNEFYLNLLNEDWKL 210
Query: 223 KKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAF 282
+K D + K G +L TD L+ D + + VK A+ + F
Sbjct: 211 EKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 283 FKHFVVAMIKLSNIGVKTGKD 303
FK F A KL G+ KD
Sbjct: 256 FKDFSKAFEKLLEDGITFPKD 276
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 153
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 154 LNMNDREVVALMGAHALGKTHLK----RSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKN 209
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 210 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 254
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 255 FSKAFEKLLENGITFPKD 272
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK----RSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKN 215
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L TD L+ D + + VK A+ + FFK
Sbjct: 216 DANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKD 260
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 261 FSKAFEKLLENGITFPKD 278
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 26/201 (12%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFM---PRIYSYNKTHDIDPTMNQDFARSLRGSCPKS 222
++ ++VAL G H +G +H K P+ + N +F +L K
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANN-------VFTNEFYLNLLNEDWKL 215
Query: 223 KKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAF 282
+K D + K G +L TD L+ D + + VK A+ + F
Sbjct: 216 EKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 283 FKHFVVAMIKLSNIGVKTGKD 303
FK F A KL G+ KD
Sbjct: 261 FKDFSKAFEKLLENGITFPKD 281
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNENW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP +++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDMDKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPFGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLEDGITFPKD 279
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 210
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 211 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 255
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 256 KFFKDFSKAFEKLLENGITFPKD 278
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLENGITFPKD 276
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLEDGITFPKD 276
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 159 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 209
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 210 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 254
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 255 KFFKDFSKAFEKLLEDGITFPKD 277
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLEDGITFPKD 276
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLEDGITFPKD 279
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLEDGITFPKD 276
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDYDKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 214
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 215 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 259
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 260 KFFKDFSKAFEKLLENGITFPKD 282
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYIMLPTDYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 74/217 (34%), Gaps = 58/217 (26%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K S
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK--------------------------------NSGYE 185
Query: 226 DPTVVALNDVSTPFVFDNFYYKNI-------------------KKGLGLLATDQMLLLDS 266
P A N VF N YY N+ K G +L TD L+ D
Sbjct: 186 GPWGAANN------VFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 267 RTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKD 303
+ + VK A+ + FFK F A KL G+ KD
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKD 276
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 36/206 (17%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKE--------FMPRIYSYNKTHDIDPTMNQDFARSLRG 217
++ ++VAL G H +G +H K +++ K ++ +N+D+ L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEKYLNL---LNEDW--KLEK 212
Query: 218 SCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMAD 277
+ +++ D K G +L TD L+ D + + VK A+
Sbjct: 213 NDANNEQWDS----------------------KSGYMMLPTDYSLIQDPKYLSIVKEYAN 250
Query: 278 AKTAFFKHFVVAMIKLSNIGVKTGKD 303
+ FFK F A KL G+ KD
Sbjct: 251 DQDKFFKDFSKAFEKLLENGITFPKD 276
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K G + +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKN-----------------------SGYEGPWGAANNV 197
Query: 226 DPTVVALNDVSTPFVFD----NFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTA 281
LN ++ + + N + K G +L TD L+ D + + VK A+ +
Sbjct: 198 FTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDK 257
Query: 282 FFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 258 FFKDFSKAFEKLLENGITFPKD 279
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L T+ L+ D + + VK A+ +
Sbjct: 214 KLEKNDANNEQWDS---------------KSGYMMLPTNYSLIQDPKYLSIVKEYANDQD 258
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 259 KFFKDFSKAFEKLLENGITFPKD 281
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 214
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L T+ L+ D + + VK A+ +
Sbjct: 215 KLEKNDANNEQWDS---------------KSGYMMLPTEYSLIQDPKYLSIVKEYANDQD 259
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 260 KFFKDFSKAFEKLLENGITFPKD 282
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMHLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLENGITFPKD 276
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 20/198 (10%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKL 225
++ ++VAL G H +G +H K R + +F +L K +K
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKN 216
Query: 226 DPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285
D + K G +L T L+ D + + VK A+ + FFK
Sbjct: 217 DANNEQWDS---------------KSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 286 FVVAMIKLSNIGVKTGKD 303
F A KL G+ KD
Sbjct: 262 FSKAFEKLLENGITFPKD 279
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPGGAANNVFTNEFYLNLLNEDW 211
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L T+ L+ D + + VK A+ +
Sbjct: 212 KLEKNDANNEQWDS---------------KSGYMMLPTNYSLIQDPKYLSIVKEYANDQD 256
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 257 KFFKDFSKAFEKLLENGITFPKD 279
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G + K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAHALGKTELK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLENGITFPKD 276
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G H +G +H K N ++ + +F +L
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 214
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L T L+ D + + VK A+ +
Sbjct: 215 KLEKNDANNEQWDS---------------KSGYMMLPTAYSLIQDPKYLSIVKEYANDQD 259
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 260 KFFKDFSKAFEKLLENGITFPKD 282
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G +G +H K N ++ + +F +L
Sbjct: 158 LNMNDREVVALMGAGALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 208
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 209 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 253
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 254 KFFKDFSKAFEKLLENGITFPKD 276
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G +G +H K N ++ + +F +L
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 209
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 210 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 254
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 255 KFFKDFSKAFEKLLENGITFPKD 277
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 106 VSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKS 165
+S D+ ++ V GP+ GR D + G LP ++ + F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 166 KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHD-----IDPTMNQDFARSLRGSCP 220
++ ++VAL G +G +H K N ++ + +F +L
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK---------NSGYEGPWGAANNVFTNEFYLNLLNEDW 209
Query: 221 KSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKT 280
K +K D + K G +L TD L+ D + + VK A+ +
Sbjct: 210 KLEKNDANNEQWDS---------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 254
Query: 281 AFFKHFVVAMIKLSNIGVKTGKD 303
FFK F A KL G+ KD
Sbjct: 255 KFFKDFSKAFEKLLENGITFPKD 277
>pdb|1PS6|A Chain A, Crystal Structure Of E.coli Pdxa
pdb|1PS6|B Chain B, Crystal Structure Of E.coli Pdxa
Length = 328
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 204 DPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK---NIKKGLGLLATDQ 260
D +N +FA + G K +ND PF +++ KK + +LAT++
Sbjct: 105 DGCLNGEFAALITGPVHKG--------VINDAGIPFTGHTEFFEERSQAKKVVMMLATEE 156
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMI 291
+ + + T ++ +ADA T H V+A++
Sbjct: 157 LRVALATTHLPLRDIADAITPALLHEVIAIL 187
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 236 STPFVFD-NFYYKNIKKG-------LGL------------LATDQMLLLDSRTRAYVKRM 275
STP VFD FY + + KG LG + +D +L DSRT + M
Sbjct: 202 STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGGFRIRSDALLARDSRTACRWQSM 261
Query: 276 ADAKTAFFKHFVVAMIKLSNIG 297
+ + F AM K+S +G
Sbjct: 262 TSSNEVMGQRFRAAMAKMSVLG 283
>pdb|1PS7|A Chain A, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|B Chain B, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|C Chain C, Crystal Structure Of E.Coli Pdxa
pdb|1PS7|D Chain D, Crystal Structure Of E.Coli Pdxa
Length = 329
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 204 DPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK---NIKKGLGLLATDQ 260
D +N +FA + G K +ND PF +++ KK + LAT++
Sbjct: 106 DGCLNGEFAALITGPVHKG--------VINDAGIPFTGHTEFFEERSQAKKVVXXLATEE 157
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMI 291
+ + + T ++ +ADA T H V+A++
Sbjct: 158 LRVALATTHLPLRDIADAITPALLHEVIAIL 188
>pdb|1PTM|A Chain A, Crystal Structure Of E.Coli Pdxa
pdb|1PTM|B Chain B, Crystal Structure Of E.Coli Pdxa
Length = 329
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 204 DPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK---NIKKGLGLLATDQ 260
D +N +FA + G K +ND PF +++ KK + LAT++
Sbjct: 106 DGCLNGEFAALITGPVHKG--------VINDAGIPFTGHTEFFEERSQAKKVVXXLATEE 157
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMI 291
+ + + T ++ +ADA T H V+A++
Sbjct: 158 LRVALATTHLPLRDIADAITPALLHEVIAIL 188
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 19 KTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSE 78
KT P+ E+I+ + + K+ + + GA+ + + FVE K ER+
Sbjct: 169 KTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVE--------LGKKVRMIERNDH 220
Query: 79 INLSLPGDGYEVFFR 93
I GD E ++
Sbjct: 221 IGTIYDGDMAEYIYK 235
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 19 KTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSE 78
KT P+ E+I+ + + K+ + + GA+ + + FVE K ER+
Sbjct: 169 KTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVE--------LGKKVRXIERNDH 220
Query: 79 INLSLPGDGYEVFFR 93
I GD E ++
Sbjct: 221 IGTIYDGDXAEYIYK 235
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 236 STPFVFD-NFYYKNIKKG-------LGL------------LATDQMLLLDSRTRAYVKRM 275
STP VFD FY + + KG LG + +D +L DSRT + M
Sbjct: 202 STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSM 261
Query: 276 ADAKTAFFKHFVVAMIKLSNIG 297
+ + + AM K+S +G
Sbjct: 262 TSSNEVMGQRYRAAMAKMSVLG 283
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 236 STPFVFD-NFYYKNIKKG-------LGL------------LATDQMLLLDSRTRAYVKRM 275
STP VFD FY + + KG LG + +D +L DSRT + M
Sbjct: 202 STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSM 261
Query: 276 ADAKTAFFKHFVVAMIKLSNIG 297
+ + + AM K+S +G
Sbjct: 262 TSSNEVMGQRYRAAMAKMSVLG 283
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 236 STPFVFD-NFYYKNIKKG-------LGL------------LATDQMLLLDSRTRAYVKRM 275
STP VFD FY + + KG LG + +D +L DSRT + M
Sbjct: 201 STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSM 260
Query: 276 ADAKTAFFKHFVVAMIKLSNIG 297
+ + + AM K+S +G
Sbjct: 261 TSSNEVMGQRYRAAMAKMSVLG 282
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 20/82 (24%)
Query: 236 STPFVFD-NFYYKNIKKG-------LGL------------LATDQMLLLDSRTRAYVKRM 275
STP VFD FY + + KG LG + +D +L DSRT + M
Sbjct: 203 STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSM 262
Query: 276 ADAKTAFFKHFVVAMIKLSNIG 297
+ + + AM K+S +G
Sbjct: 263 TSSNEVMGQRYRAAMAKMSVLG 284
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 14 HDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCF---VEGCDASVLIASSKT 70
H FY P + ++ + +Q ++ + G I HD + G D ++L +
Sbjct: 44 HCFYGVESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV 103
Query: 71 NKAERDSEINLSLPGDG 87
N A DS+ +SLP G
Sbjct: 104 NYA--DSQRPISLPSKG 118
>pdb|1R8K|A Chain A, Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLASE;
Subunit Of Pyridoxine Phosphate Biosynthetic Protein
Pdxj- Pdxa [salmonella Typhimurium]
pdb|1R8K|B Chain B, Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLASE;
Subunit Of Pyridoxine Phosphate Biosynthetic Protein
Pdxj- Pdxa [salmonella Typhimurium]
Length = 329
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 204 DPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK---NIKKGLGLLATDQ 260
D +N +FA + G K +ND F +++ KK + LAT++
Sbjct: 106 DGCLNGEFAALITGPVHKG--------VINDAGISFTGHTEFFEERSQAKKVVXXLATEE 157
Query: 261 MLLLDSRTRAYVKRMADAKTAFFKHFVVAMI 291
+ + + T ++ +ADA T H V+A++
Sbjct: 158 LRVALATTHLPLRAIADAITPALLHEVIAIL 188
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 57 EGCDASVLIASSKTNKAERDSEI------NLSLPGDGYEVFFRAKRALELQCPGIVSCAD 110
+G AS+ A ++ K +R +I N +LP G + R +R + GI+ C
Sbjct: 371 DGMPASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGF 430
Query: 111 IMAIATR 117
MA+ +
Sbjct: 431 PMALGAQ 437
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 14 HDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCF---VEGCDASVLIASSKT 70
H FY P + ++ + +Q + + G I HD + G D ++L +
Sbjct: 44 HCFYGVESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV 103
Query: 71 NKAERDSEINLSLPGDG 87
N A DS+ +SLP G
Sbjct: 104 NYA--DSQRPISLPSKG 118
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 14 HDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCF---VEGCDASVLIASSKT 70
H FY P + ++ + +Q + + G I HD + G D ++L +
Sbjct: 44 HCFYGVESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV 103
Query: 71 NKAERDSEINLSLPGDG 87
N A DS+ +SLP G
Sbjct: 104 NYA--DSQRPISLPSKG 118
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 178 GGHTIGF-SHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGS 218
GGH F +E R+Y YNK DI T+N+ A+S+ G+
Sbjct: 267 GGHDAKFIDSLQENEFRLYYYNKFKDIASTLNK--AKSIVGT 306
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 178 GGHTIGF-SHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGS 218
GGH F +E R+Y YNK DI T+N+ A+S+ G+
Sbjct: 267 GGHDAKFIDSLQENEFRLYYYNKFKDIASTLNK--AKSIVGT 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,803,601
Number of Sequences: 62578
Number of extensions: 338578
Number of successful extensions: 1126
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 194
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)