Query 039410
Match_columns 315
No_of_seqs 142 out of 1317
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3E-104 6E-109 746.7 24.3 298 9-314 22-324 (324)
2 cd00693 secretory_peroxidase H 100.0 3E-100 8E-105 717.6 26.3 298 11-313 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 5.2E-71 1.1E-75 503.6 12.2 229 28-278 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.9E-69 4.1E-74 503.7 22.7 232 26-311 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 9.6E-66 2.1E-70 473.9 21.0 230 23-299 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 3.9E-65 8.5E-70 468.3 20.1 233 13-299 2-248 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 1.1E-63 2.4E-68 457.9 21.6 221 25-299 17-248 (251)
8 cd00692 ligninase Ligninase an 100.0 1.2E-63 2.7E-68 472.4 22.3 237 24-315 16-288 (328)
9 cd00314 plant_peroxidase_like 100.0 6.9E-59 1.5E-63 430.0 19.7 224 27-295 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1E-58 2.2E-63 445.4 19.3 260 26-304 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 4E-55 8.6E-60 444.5 19.6 261 26-304 55-408 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.9E-52 4.2E-57 422.7 19.7 260 26-304 57-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 7.9E-49 1.7E-53 359.4 14.7 210 37-295 36-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.8E-41 4E-46 314.3 17.7 223 27-297 14-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.2E-36 4.7E-41 307.8 16.6 221 26-297 428-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 9.2E-36 2E-40 301.7 18.0 221 29-297 441-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.5E-33 1.2E-37 270.1 17.1 253 26-297 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2E-14 4.4E-19 141.1 10.0 216 30-297 452-725 (730)
19 PTZ00411 transaldolase-like pr 78.1 36 0.00079 33.0 11.8 77 106-182 161-252 (333)
20 PRK12309 transaldolase/EF-hand 70.3 89 0.0019 31.0 12.6 75 106-181 155-245 (391)
21 TIGR00874 talAB transaldolase. 57.7 1.6E+02 0.0034 28.5 11.3 147 106-285 149-312 (317)
22 PF11895 DUF3415: Domain of un 55.8 9.5 0.00021 29.3 2.1 19 281-299 2-20 (80)
23 PRK05269 transaldolase B; Prov 51.1 1.6E+02 0.0034 28.4 10.2 66 106-171 151-221 (318)
24 PRK12346 transaldolase A; Prov 42.0 31 0.00067 33.3 3.8 75 106-181 150-240 (316)
25 PRK05264 transcriptional repre 33.8 50 0.0011 26.0 3.1 45 261-310 35-81 (105)
26 cd00490 Met_repressor_MetJ Met 32.7 53 0.0012 25.7 3.1 45 261-310 34-80 (103)
27 KOG0400 40S ribosomal protein 28.6 35 0.00076 28.7 1.5 32 155-186 32-64 (151)
28 cd00957 Transaldolase_TalAB Tr 25.2 49 0.0011 31.9 2.1 64 106-170 149-218 (313)
29 cd00439 Transaldolase Transald 24.7 74 0.0016 29.5 3.2 63 106-170 140-209 (252)
30 COG3060 MetJ Transcriptional r 24.5 1E+02 0.0023 23.9 3.4 31 261-291 35-67 (105)
31 PF04225 OapA: Opacity-associa 23.0 70 0.0015 24.5 2.3 25 156-180 10-34 (85)
32 PLN00017 photosystem I reactio 22.9 50 0.0011 25.6 1.4 19 275-293 38-56 (90)
33 PF01340 MetJ: Met Apo-repress 22.5 50 0.0011 25.9 1.3 31 261-291 34-66 (104)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.9e-104 Score=746.70 Aligned_cols=298 Identities=43% Similarity=0.758 Sum_probs=283.2
Q ss_pred CCCCCcchhhcCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCCCccccCcccCCCCCccch
Q 039410 9 NARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGY 88 (315)
Q Consensus 9 ~~~l~~~~y~~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~ 88 (315)
+++|+++||++|||++|+||++.|++.+.++|+++|++|||+|||||++||||||||+++ ..|+++++|.+| +||
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l--~Gf 96 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLL--RGY 96 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCc--chH
Confidence 367999999999999999999999999999999999999999999999999999999864 369999999999 999
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCC
Q 039410 89 EVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGL 168 (315)
Q Consensus 89 ~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 168 (315)
++|+.||+.+|+.||++|||||||+||||+||+++|||.|+|++||+|+++|...++ .+||.|+.+++++++.|+++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~-~~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDA-SNLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccc-cCCcCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999987766 4899999999999999999999
Q ss_pred ChhhhHhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHH
Q 039410 169 STLDMVALSGGHTIGFSHCKEFMPRIYSYNKTH-DIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK 247 (315)
Q Consensus 169 ~~~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~ 247 (315)
+.+|||+||||||||++||.+|.+|||||.+++ .+||+||++|++.|++.||. .++.+..+++|+.||.+|||+||+
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~--~~~~~~~~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ--NGDGSRRIALDTGSSNRFDASFFS 253 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC--CCCCCccccCCCCCCcccccHHHH
Confidence 999999999999999999999999999999874 58999999999999999995 333334678999999999999999
Q ss_pred hhhcCcccchhhHHhhcChhHHHHHHHHHHhH----HHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCC
Q 039410 248 NIKKGLGLLATDQMLLLDSRTRAYVKRMADAK----TAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFN 314 (315)
Q Consensus 248 ~l~~~~g~L~sD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n 314 (315)
||++++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+||++|+|+||++|||||+|+++|
T Consensus 254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.5e-100 Score=717.61 Aligned_cols=298 Identities=52% Similarity=0.867 Sum_probs=287.6
Q ss_pred CCCcchhhcCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCCCccccCcccCCCCCccchHH
Q 039410 11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEV 90 (315)
Q Consensus 11 ~l~~~~y~~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~ 90 (315)
||+++||++|||++|+||+++|++.+.++++++|++|||+|||||++||||||||+++.++.+|+++++|.+| +||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l--~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSL--RGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCc--chhHH
Confidence 6999999999999999999999999999999999999999999999999999999987777799999999999 89999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCh
Q 039410 91 FFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLST 170 (315)
Q Consensus 91 i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 170 (315)
|+.||+.+|+.||++|||||||+||||+||+++|||.|+|++||+|+.++....+ +.||.|..+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998877655 789999999999999999999999
Q ss_pred hhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhh
Q 039410 171 LDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIK 250 (315)
Q Consensus 171 ~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~ 250 (315)
+|||||+||||||++||.+|.+|+|||+|++.+||+||+.|+..|++.||+ .++.++.+++|+.||.+|||+||++++
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~--~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPA--GGDDDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCC--CCCCCccccCCCCCCCccccHHHHHHH
Confidence 999999999999999999999999999999889999999999999999997 444556789999999999999999999
Q ss_pred cCcccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCC
Q 039410 251 KGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSF 313 (315)
Q Consensus 251 ~~~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~ 313 (315)
.++|+|+|||+|+.|++|+++|++||.||+.|+++|+.||+||++|||+||++|||||+|++|
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.2e-71 Score=503.63 Aligned_cols=229 Identities=48% Similarity=0.802 Sum_probs=209.3
Q ss_pred HHHHHHHHHHhCCCchhhhHHHHhhccCC-CCCCceEEecCCCCCccccCcccCCCCCccchHHHHHHHHHHHhhCCCCC
Q 039410 28 IYNVASQKLLEAPVTAAGALRIFFHDCFV-EGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIV 106 (315)
Q Consensus 28 Vr~~v~~~~~~~~~~a~~llRL~FHDc~~-~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~i~~iK~~le~~cp~~V 106 (315)
||++|++.+..+++++|+||||+||||++ +|||||||+. ..|+++++|.||+ +++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~-~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLR-DGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHH-HHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcc-eeeechhhHHhhhcccccCCC
Confidence 89999999999999999999999999999 9999999983 4799999999992 499999999999999999999
Q ss_pred cHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhccccccccc
Q 039410 107 SCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSH 186 (315)
Q Consensus 107 S~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~h 186 (315)
||||||+|||++||+.+|||.|+|++||+|+.++....+ .+||.|..+++++++.|+++|||++|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999998766 6899999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcCcccchhhHHhhcCh
Q 039410 187 CKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDS 266 (315)
Q Consensus 187 c~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~~g~L~sD~~L~~d~ 266 (315)
|.+|. |+| + .+||+||+.|+.. .|+. +++ +.+++| ||.+|||+||+++++++|+|+||++|+.|+
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C~~---~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~ 218 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NCNS---GGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP 218 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SSST---SGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST
T ss_pred ecccc-ccc-c----cccccccccccee---ccCC---Ccc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH
Confidence 99999 999 5 4799999999988 9932 222 377888 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 039410 267 RTRAYVKRMADA 278 (315)
Q Consensus 267 ~t~~~V~~yA~d 278 (315)
+|+++|++||+|
T Consensus 219 ~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 ETRPIVERYAQD 230 (230)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.9e-69 Score=503.68 Aligned_cols=232 Identities=30% Similarity=0.442 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHHHhhccC-------CCCCCceEEecCCCCCccccCcccCCCCCccchHHHHHHHHHH
Q 039410 26 KIIYNVASQKLLEAPVTAAGALRIFFHDCF-------VEGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRAL 98 (315)
Q Consensus 26 ~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~-------~~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~i~~iK~~l 98 (315)
+.+|++|+ .+.++|.++|.+|||+||||+ ++||||||++. +|+++++|.|| .+++++|++||+++
T Consensus 15 ~~~~~~~~-~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL-~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDLR-ALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGL-KIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHH-HHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccch-HHHHHHHHHHHHHc
Confidence 45666664 467799999999999999999 89999999984 69999999999 36999999999986
Q ss_pred HhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhc
Q 039410 99 ELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSG 178 (315)
Q Consensus 99 e~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G 178 (315)
| +|||||||+||||+||+++|||.|+|++||+|+++++ ++++||+|..+++++++.|+++|||++|||||+|
T Consensus 87 ----~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 ----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred ----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 4 7999999999999999999999999999999999885 3468999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcC--ccc-
Q 039410 179 GHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKG--LGL- 255 (315)
Q Consensus 179 aHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~--~g~- 255 (315)
|||||++||. |+ +|.| |+ ..||.+|||+||++++++ +|+
T Consensus 159 AHTiG~ahc~----r~-g~~g--------------------~~-------------~~Tp~~FDN~Yy~~ll~~~~~gll 200 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDG--------------------PW-------------TKEPLKFDNSYFVELLKGESEGLL 200 (289)
T ss_pred cccccccccc----CC-CCCC--------------------CC-------------CCCCCccChHHHHHHHcCCcCCcc
Confidence 9999999995 54 3322 11 268999999999999998 787
Q ss_pred -chhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCCccccccc
Q 039410 256 -LATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCG 311 (315)
Q Consensus 256 -L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~ 311 (315)
|+||++|+.|++|+.+|++||.||++|+++|+.||+||++|||+||++||+.+.-+
T Consensus 201 ~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 201 KLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 79999999999999999999999999999999999999999999999999988644
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=9.6e-66 Score=473.91 Aligned_cols=230 Identities=28% Similarity=0.374 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCC---CccccCcccCCCCCccchHHHHHHHHHHH
Q 039410 23 NVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKT---NKAERDSEINLSLPGDGYEVFFRAKRALE 99 (315)
Q Consensus 23 ~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~---~~~E~~~~~N~gL~~~~~~~i~~iK~~le 99 (315)
..+++|+++|++.+. ++.++|.+|||+||||++ ||+|+++++.++ +.+|+++++|.+| .+++++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L-~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGL-DIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccch-HHHHHHHHHHHHHc-
Confidence 467899999999999 999999999999999984 777776644322 2479999999999 57999999999976
Q ss_pred hhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhcc
Q 039410 100 LQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGG 179 (315)
Q Consensus 100 ~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~Ga 179 (315)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||||+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 5 799999999999999999999999999999999999877777899999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcCcc-----
Q 039410 180 HTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLG----- 254 (315)
Q Consensus 180 HtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~~g----- 254 (315)
||||++||.. ++|.|+ +..||.+|||+||++|+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~---------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~ 203 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP---------------------------------WTKNPLKFDNSYFKELLEEDWKLPTP 203 (253)
T ss_pred ceeecccccC-----CCCCCC---------------------------------CCCCCCcccHHHHHHHhcCCCccCcC
Confidence 9999999953 233221 125899999999999999999
Q ss_pred ---cchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCC
Q 039410 255 ---LLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVK 299 (315)
Q Consensus 255 ---~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~ 299 (315)
+|+||++|+.|++|+.+|++||.|+++|+++|+.||+||+++||.
T Consensus 204 ~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 204 GLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.9e-65 Score=468.27 Aligned_cols=233 Identities=28% Similarity=0.421 Sum_probs=207.8
Q ss_pred Ccchhh--cCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhh-----ccCCC--CCCceEEecCCCCCccccCcccCCCC
Q 039410 13 KHDFYK--KTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFH-----DCFVE--GCDASVLIASSKTNKAERDSEINLSL 83 (315)
Q Consensus 13 ~~~~y~--~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FH-----Dc~~~--GcDgSill~~~~~~~~E~~~~~N~gL 83 (315)
..+||. +-|+++++.|++.|++.+ .+++++|.||||+|| ||+++ ||||||.. .+|+++++|.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl 74 (250)
T PLN02364 2 TKNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGI 74 (250)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCH
Confidence 345665 337899999999999987 788999999999999 77776 99999954 369999999998
Q ss_pred CccchHHHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHH
Q 039410 84 PGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLF 163 (315)
Q Consensus 84 ~~~~~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 163 (315)
.+++++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.. ++.||.|..+++++++.|
T Consensus 75 -~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F 145 (250)
T PLN02364 75 -HIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVF 145 (250)
T ss_pred -HHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHH
Confidence 47999999999987 479999999999999999999999999999999999863 468999999999999999
Q ss_pred HH-CCCChhhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceec
Q 039410 164 KS-KGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFD 242 (315)
Q Consensus 164 ~~-~Gl~~~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fD 242 (315)
++ +|||++|||||+||||||++|| .|+ +|.|+ + ..||.+||
T Consensus 146 ~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~--------------------~-------------~~tp~~fD 187 (250)
T PLN02364 146 AKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA--------------------W-------------TSNPLIFD 187 (250)
T ss_pred HHhcCCCHHHheeeecceeeccccC----CCC-CCCCC--------------------C-------------CCCCCccc
Confidence 96 6999999999999999999999 343 33321 1 26899999
Q ss_pred hHHHHhhhcC--cccch--hhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCC
Q 039410 243 NFYYKNIKKG--LGLLA--TDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVK 299 (315)
Q Consensus 243 n~Yy~~l~~~--~g~L~--sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~ 299 (315)
|+||++|+.+ +|+|. ||++|+.|++|+.+|+.||.||++|+++|++||+||++||+.
T Consensus 188 n~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 188 NSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred hHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999998 88865 999999999999999999999999999999999999999974
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.1e-63 Score=457.90 Aligned_cols=221 Identities=30% Similarity=0.444 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHhCCCchhhhHHHHhhccCC-------CCCCceEEecCCCCCccccCcccCCCCCccchHHHHHHHHH
Q 039410 25 EKIIYNVASQKLLEAPVTAAGALRIFFHDCFV-------EGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRA 97 (315)
Q Consensus 25 e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~-------~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~i~~iK~~ 97 (315)
.+-++.+|.+.+ .+...+|.+|||+||||.+ |||||||.+. +|+++++|.|| ..++++|++||++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL-~~~~~~i~~iK~~ 88 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGL-DIAVRLLDPIKEL 88 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCCh-HHHHHHHHHHHHH
Confidence 345677888876 4568999999999999964 8999999863 69999999999 3499999999998
Q ss_pred HHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh
Q 039410 98 LELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALS 177 (315)
Q Consensus 98 le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~ 177 (315)
+ + +|||||||+|||++||+++|||.|+|++||+|+..+. ++++||.|+.+++++++.|+++||+++|||||+
T Consensus 89 ~----~-~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs 160 (251)
T PLN02879 89 F----P-ILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALS 160 (251)
T ss_pred c----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeee
Confidence 7 3 6999999999999999999999999999999999875 357899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcC--ccc
Q 039410 178 GGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKG--LGL 255 (315)
Q Consensus 178 GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~--~g~ 255 (315)
||||||++||. | ++|.|. .| .||.+|||+||++|+.+ +|+
T Consensus 161 GaHTiG~ah~~----r-~g~~g~--------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gl 202 (251)
T PLN02879 161 GGHTLGRCHKE----R-SGFEGA--------------------------------WT-PNPLIFDNSYFKEILSGEKEGL 202 (251)
T ss_pred ccccccccccc----c-ccCCCC--------------------------------CC-CCccceeHHHHHHHHcCCcCCC
Confidence 99999999995 4 444331 12 58999999999999998 887
Q ss_pred --chhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCC
Q 039410 256 --LATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVK 299 (315)
Q Consensus 256 --L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~ 299 (315)
|+||++|+.|++|+++|++||.||++|+++|+.||+||++||+.
T Consensus 203 l~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 203 LQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred ccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 68999999999999999999999999999999999999999975
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.2e-63 Score=472.36 Aligned_cols=237 Identities=27% Similarity=0.381 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHhCC---CchhhhHHHHhhccCC------------CCCCceEEecCCCCCccccCcccCCCCCccch
Q 039410 24 VEKIIYNVASQKLLEAP---VTAAGALRIFFHDCFV------------EGCDASVLIASSKTNKAERDSEINLSLPGDGY 88 (315)
Q Consensus 24 ~e~~Vr~~v~~~~~~~~---~~a~~llRL~FHDc~~------------~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~ 88 (315)
+|..|+++|++.+..+. ..++.+|||+||||++ +||||||||++. .|+++++|.|| +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL--~-- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGL--D-- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCH--H--
Confidence 78999999999998543 4677899999999986 899999999742 69999999999 5
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHh-hcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCC
Q 039410 89 EVFFRAKRALELQCPGIVSCADIMAIATRDLVH-LAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKG 167 (315)
Q Consensus 89 ~~i~~iK~~le~~cp~~VS~ADilalAa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G 167 (315)
++|+.||..+|+.| |||||||+||||+||+ ++|||.|+|++||+|++++. +++.||.|+.+++++++.|+++|
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~G 161 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcC
Confidence 99999999999998 9999999999999999 57999999999999999886 34689999999999999999999
Q ss_pred CChhhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHH
Q 039410 168 LSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK 247 (315)
Q Consensus 168 l~~~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~ 247 (315)
|+++|||||+||||||++|. .||+++ ..++| .||.+|||+||+
T Consensus 162 f~~~E~VaLsGAHTiG~a~~---------------~Dps~~---------------------g~p~D-~TP~~FDn~Yf~ 204 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDF---------------VDPSIA---------------------GTPFD-STPGVFDTQFFI 204 (328)
T ss_pred CCHHHHhhhcccccccccCC---------------CCCCCC---------------------CCCCC-CCcchhcHHHHH
Confidence 99999999999999999982 366653 13567 599999999999
Q ss_pred hhh-cCcc-------------------cchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q 039410 248 NIK-KGLG-------------------LLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIR 307 (315)
Q Consensus 248 ~l~-~~~g-------------------~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR 307 (315)
+++ ++.+ +|+||++|+.|++|+.+|++||.||++|+++|+.||+||++|||. ...+
T Consensus 205 ~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l 280 (328)
T cd00692 205 ETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISL 280 (328)
T ss_pred HHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchh
Confidence 987 5555 499999999999999999999999999999999999999999987 3388
Q ss_pred ccccCCCC
Q 039410 308 RDCGSFNG 315 (315)
Q Consensus 308 ~~C~~~n~ 315 (315)
..|+.|+.
T Consensus 281 ~dcs~v~p 288 (328)
T cd00692 281 TDCSDVIP 288 (328)
T ss_pred ccCcccCC
Confidence 89999873
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=6.9e-59 Score=430.00 Aligned_cols=224 Identities=35% Similarity=0.428 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhCCCchhhhHHHHhhccCCC--------CCCceEEecCCCCCccccCcccCCCCCccchHHHHHHHHHH
Q 039410 27 IIYNVASQKLLEAPVTAAGALRIFFHDCFVE--------GCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRAL 98 (315)
Q Consensus 27 ~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~--------GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~i~~iK~~l 98 (315)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| .+++++|++||.++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l-~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGL-DKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccH-HHHHHHHHHHHHHc
Confidence 5889999999999999999999999999986 999999997 49999999997 58999999999999
Q ss_pred HhhCCCCCcHHHHHHHHhHhHHhhc--CCCccccCCCCCCCCCCc--cccccCCCCCCCCCHHHHHHHHHHCCCChhhhH
Q 039410 99 ELQCPGIVSCADIMAIATRDLVHLA--GGPRWEVPKGRRDGLISK--ASRVEGNLPHVNQTISQTISLFKSKGLSTLDMV 174 (315)
Q Consensus 99 e~~cp~~VS~ADilalAa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~V 174 (315)
|. |++|||||||+||+++||+.+ |||.|+|++||+|++.+. ...+...+|.|..+++++++.|+++||+++|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 88 889999999999999999999 999999999999999764 334567788888999999999999999999999
Q ss_pred hhh-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcC
Q 039410 175 ALS-GGHTI-GFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKG 252 (315)
Q Consensus 175 aL~-GaHti-G~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~ 252 (315)
||+ ||||| |++||..|..|+ |+ +++.||.+|||+||++++.+
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~~------------~~~~tp~~fDN~yy~~l~~~ 196 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------SG------------LWTSTPFTFDNAYFKNLLDM 196 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------CC------------CCCCCCCccchHHHHHHhcC
Confidence 999 99999 999998877664 21 23579999999999999998
Q ss_pred c----------------ccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 039410 253 L----------------GLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSN 295 (315)
Q Consensus 253 ~----------------g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~ 295 (315)
. ++|+||+.|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 197 NWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8 899999999999999999999999999999999999999975
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1e-58 Score=445.37 Aligned_cols=260 Identities=21% Similarity=0.243 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHhC--------CCchhhhHHHHhhccCC-------CCCC-ceEEecCCCCCccccCcccCCCCCccchH
Q 039410 26 KIIYNVASQKLLEA--------PVTAAGALRIFFHDCFV-------EGCD-ASVLIASSKTNKAERDSEINLSLPGDGYE 89 (315)
Q Consensus 26 ~~Vr~~v~~~~~~~--------~~~a~~llRL~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~gL~~~~~~ 89 (315)
+.|+++|++++... ...+|.+|||+||++.+ ||++ |+|.+. +|++++.|.|| .++..
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL-~~a~~ 117 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNL-DKARR 117 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhH-HHHHH
Confidence 78999999999864 37899999999999975 7997 788875 79999999999 68999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccc--------------------------
Q 039410 90 VFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKAS-------------------------- 143 (315)
Q Consensus 90 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------------------------- 143 (315)
++++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 118 ~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~ 193 (409)
T cd00649 118 LLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLA 193 (409)
T ss_pred HHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchh
Confidence 999999976 55699999999999999999999999999999999765321
Q ss_pred ---------cccC--CCCCCCCCHHHHHHHHHHCCCChhhhHhh-hcccccccccccccccccccCCCCCCCCCCCCHHH
Q 039410 144 ---------RVEG--NLPHVNQTISQTISLFKSKGLSTLDMVAL-SGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDF 211 (315)
Q Consensus 144 ---------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~ 211 (315)
.+++ .||+|..++.+|++.|.+||||++||||| +||||||++||..|.+||. +||.+++.|
T Consensus 194 a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~ 266 (409)
T cd00649 194 AVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIE 266 (409)
T ss_pred hhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHH
Confidence 1223 79999999999999999999999999999 5999999999999999983 699999999
Q ss_pred HHHHh--ccCCCCCCCCCccccccC---CCCcceechHHHHhhhc-----------------------------------
Q 039410 212 ARSLR--GSCPKSKKLDPTVVALND---VSTPFVFDNFYYKNIKK----------------------------------- 251 (315)
Q Consensus 212 ~~~L~--~~Cp~~~~~~~~~~~~lD---~~tp~~fDn~Yy~~l~~----------------------------------- 251 (315)
+..|. ..||.+ .++++.+..+| +.||.+|||+||++|++
T Consensus 267 ~~gLgw~~~Cp~g-~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~ 345 (409)
T cd00649 267 QQGLGWKNSYGTG-KGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKK 345 (409)
T ss_pred HHhhcccccCCCC-CCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccc
Confidence 99996 899963 23334456788 58999999999999998
Q ss_pred -CcccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHH--HhCCCCCCCCC
Q 039410 252 -GLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKL--SNIGVKTGKDG 304 (315)
Q Consensus 252 -~~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km--~~lgv~tg~~G 304 (315)
+++||+||++|+.|++++++|++||.||++||++|++||.|| ..+|+++-.-|
T Consensus 346 ~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 346 HAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 68999987666
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4e-55 Score=444.52 Aligned_cols=261 Identities=20% Similarity=0.189 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHhC--------CCchhhhHHHHhhccCC-------CCCC-ceEEecCCCCCccccCcccCCCCCccchH
Q 039410 26 KIIYNVASQKLLEA--------PVTAAGALRIFFHDCFV-------EGCD-ASVLIASSKTNKAERDSEINLSLPGDGYE 89 (315)
Q Consensus 26 ~~Vr~~v~~~~~~~--------~~~a~~llRL~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~gL~~~~~~ 89 (315)
+.|+++|++++... ...+|.+|||+||++.+ |||+ |+|.+. +|++|+.|.+| ++++.
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~L-dka~~ 127 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNL-DKARR 127 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhH-HHHHH
Confidence 57999999999865 36899999999999975 7885 778875 79999999999 68899
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCcc--------------------------c
Q 039410 90 VFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKA--------------------------S 143 (315)
Q Consensus 90 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~--------------------------~ 143 (315)
++++||+ +||++|||||||+|||++||+.+|||.|+|.+||+|+..+.. .
T Consensus 128 lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~ 203 (716)
T TIGR00198 128 LLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAA 203 (716)
T ss_pred HHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchh
Confidence 9999988 579999999999999999999999999999999999954320 0
Q ss_pred ----------cccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cccccccccccccccccccCCCCCCCCCCCCHHHH
Q 039410 144 ----------RVEGNLPHVNQTISQTISLFKSKGLSTLDMVALS-GGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFA 212 (315)
Q Consensus 144 ----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~ 212 (315)
+....+|.|..++.+|++.|.+||||++|||||+ ||||||++||.+|.+|| | +||++++.|+
T Consensus 204 ~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl----g---~dP~~~~~~~ 276 (716)
T TIGR00198 204 TEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI----G---PDPEGAPIEE 276 (716)
T ss_pred hhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC----C---CCCCcCHHHH
Confidence 1122699999999999999999999999999996 99999999999999997 2 7999999999
Q ss_pred HHHhccCCCC-CCCCCccccccC---CCCcceechHHHHhhhcC----------------------------------cc
Q 039410 213 RSLRGSCPKS-KKLDPTVVALND---VSTPFVFDNFYYKNIKKG----------------------------------LG 254 (315)
Q Consensus 213 ~~L~~~Cp~~-~~~~~~~~~~lD---~~tp~~fDn~Yy~~l~~~----------------------------------~g 254 (315)
+.|+..||.. +.+.++.+..+| +.||.+|||+||+||+.. .+
T Consensus 277 ~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~ 356 (716)
T TIGR00198 277 QGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPI 356 (716)
T ss_pred HHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccC
Confidence 9999999853 112233356787 689999999999999974 68
Q ss_pred cchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHH--hCCCCCCCCC
Q 039410 255 LLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLS--NIGVKTGKDG 304 (315)
Q Consensus 255 ~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~--~lgv~tg~~G 304 (315)
+|+||++|..|++++++|+.||.|+++|+++|++||.||+ .+|++.-.-|
T Consensus 357 mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 357 MLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred ccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 9999999999999999999999999999999999999998 5776654443
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-52 Score=422.68 Aligned_cols=260 Identities=20% Similarity=0.228 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHhC--------CCchhhhHHHHhhccCC-------CCCC-ceEEecCCCCCccccCcccCCCCCccchH
Q 039410 26 KIIYNVASQKLLEA--------PVTAAGALRIFFHDCFV-------EGCD-ASVLIASSKTNKAERDSEINLSLPGDGYE 89 (315)
Q Consensus 26 ~~Vr~~v~~~~~~~--------~~~a~~llRL~FHDc~~-------~GcD-gSill~~~~~~~~E~~~~~N~gL~~~~~~ 89 (315)
+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.|.+| +++..
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~N~gL-~ka~~ 129 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPDNVNL-DKARR 129 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchhhhhH-HHHHH
Confidence 67999999999865 37899999999999975 7997 788874 79999999999 68999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccc--------------------------
Q 039410 90 VFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKAS-------------------------- 143 (315)
Q Consensus 90 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------------------------- 143 (315)
++++||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 130 ~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl 205 (726)
T PRK15061 130 LLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPL 205 (726)
T ss_pred HHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccch
Confidence 999999977 55799999999999999999999999999999998654321
Q ss_pred ------------cccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cccccccccccccccccccCCCCCCCCCCCCHH
Q 039410 144 ------------RVEGNLPHVNQTISQTISLFKSKGLSTLDMVALS-GGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQD 210 (315)
Q Consensus 144 ------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~ 210 (315)
+-...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|| | +||.+++.
T Consensus 206 ~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl----g---pdP~~a~~ 278 (726)
T PRK15061 206 AAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV----G---PEPEAAPI 278 (726)
T ss_pred hhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc----C---CCCCcCHH
Confidence 0012489999999999999999999999999995 99999999999999997 2 79999999
Q ss_pred HHHHHh--ccCCCCCCCCCccccccC---CCCcceechHHHHhhhcC---------------------------------
Q 039410 211 FARSLR--GSCPKSKKLDPTVVALND---VSTPFVFDNFYYKNIKKG--------------------------------- 252 (315)
Q Consensus 211 ~~~~L~--~~Cp~~~~~~~~~~~~lD---~~tp~~fDn~Yy~~l~~~--------------------------------- 252 (315)
+++.|. ..||.+ .+.++.+..+| +.||.+|||+||++|+.+
T Consensus 279 ~~qgLgw~~~c~~g-~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~ 357 (726)
T PRK15061 279 EEQGLGWKNSYGSG-KGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSK 357 (726)
T ss_pred HHHhccccccCCCC-CCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccc
Confidence 999985 899973 33344456788 689999999999999974
Q ss_pred ---cccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCCCCCCCC
Q 039410 253 ---LGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSN--IGVKTGKDG 304 (315)
Q Consensus 253 ---~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~--lgv~tg~~G 304 (315)
.+||+||++|+.|++++++|++||.||++|+++|++||.||++ +|+++-.-|
T Consensus 358 ~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 358 KHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999999999999999955 777665444
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=7.9e-49 Score=359.38 Aligned_cols=210 Identities=26% Similarity=0.329 Sum_probs=173.0
Q ss_pred HhCCCchhhhHHHHhhccC-------CCCCCceEEecCCCCCccccC-cccCCCCCccchHHHHHHHHHHHhhCCCCCcH
Q 039410 37 LEAPVTAAGALRIFFHDCF-------VEGCDASVLIASSKTNKAERD-SEINLSLPGDGYEVFFRAKRALELQCPGIVSC 108 (315)
Q Consensus 37 ~~~~~~a~~llRL~FHDc~-------~~GcDgSill~~~~~~~~E~~-~~~N~gL~~~~~~~i~~iK~~le~~cp~~VS~ 108 (315)
..++.++++||||+||||+ ++||||||+++.. .+|+. .+.|.+| ++|+.|+.+ +|||
T Consensus 36 ~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l--~~~~~i~~~----------~VSc 100 (264)
T cd08201 36 GPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTL--NFFVNFYSP----------RSSM 100 (264)
T ss_pred CCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhcc--ccceeeccC----------ccCH
Confidence 3678899999999999999 8999999999732 35666 4455566 677766443 5999
Q ss_pred HHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhc-ccccccccc
Q 039410 109 ADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSG-GHTIGFSHC 187 (315)
Q Consensus 109 ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHtiG~~hc 187 (315)
||||||||++||+.+|||.|+|++||+|++++... .||.|+.+++++++.|+++||+++|||+|+| |||||++||
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc 176 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHS 176 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeeccc
Confidence 99999999999999999999999999999988642 4999999999999999999999999999995 999999999
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhhcCc----------ccch
Q 039410 188 KEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGL----------GLLA 257 (315)
Q Consensus 188 ~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~~~~----------g~L~ 257 (315)
..|.+++- |. ...+...++| .||.+|||+||.+++.+. -.+.
T Consensus 177 ~~f~~~~~---------~g------------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~ 228 (264)
T cd08201 177 EDFPEIVP---------PG------------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTN 228 (264)
T ss_pred ccchhhcC---------Cc------------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCcc
Confidence 99887742 10 0001123566 699999999999999864 2468
Q ss_pred hhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 039410 258 TDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSN 295 (315)
Q Consensus 258 sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~ 295 (315)
||..++....-. .++..| +++.|.+.++..++||++
T Consensus 229 sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 229 SDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred chhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 999999876543 457777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.8e-41 Score=314.33 Aligned_cols=223 Identities=20% Similarity=0.212 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhCCCchhhhHHHHhhccCC-------CCCCce-EEecCCCCCccccCcccCCC--CCccchHHHHHHHH
Q 039410 27 IIYNVASQKLLEAPVTAAGALRIFFHDCFV-------EGCDAS-VLIASSKTNKAERDSEINLS--LPGDGYEVFFRAKR 96 (315)
Q Consensus 27 ~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~g--L~~~~~~~i~~iK~ 96 (315)
.--+.+++.+.......+.+|||+||++.+ ||++|+ |.+. +|++|+.|.+ | .+++.++++||+
T Consensus 14 ~di~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L-~~~~~~Le~ik~ 86 (297)
T cd08200 14 ADIAALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEEL-AKVLAVLEGIQK 86 (297)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHH-HHHHHHHHHHHH
Confidence 334667777777778899999999999975 899999 7664 7999999999 9 578999999999
Q ss_pred HHHhhC-C-CCCcHHHHHHHHhHhHHhhcCC-----CccccCCCCCCCCCCcccccc---CCCCCCCC------------
Q 039410 97 ALELQC-P-GIVSCADIMAIATRDLVHLAGG-----PRWEVPKGRRDGLISKASRVE---GNLPHVNQ------------ 154 (315)
Q Consensus 97 ~le~~c-p-~~VS~ADilalAa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~~lP~p~~------------ 154 (315)
++...- + ..||+||+|+||+.+|||.+|| |.|+|.+||.|++.+... ++ ..+|.+..
T Consensus 87 ~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td-~~sf~~l~P~adg~rny~~~~~~~~ 165 (297)
T cd08200 87 EFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTD-VESFEVLEPKADGFRNYLKKGYRVP 165 (297)
T ss_pred HhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCC-cccccccCCCCcccccccccCCCCC
Confidence 884211 1 1599999999999999999999 999999999999876432 21 13454322
Q ss_pred CHHHHHHHHHHCCCChhhhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCcccccc
Q 039410 155 TISQTISLFKSKGLSTLDMVALSGGH-TIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALN 233 (315)
Q Consensus 155 ~~~~l~~~F~~~Gl~~~e~VaL~GaH-tiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~l 233 (315)
..+.|++.|.++|||++|||||+||| ++|..|..+ +.| |+
T Consensus 166 ~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~w------------ 206 (297)
T cd08200 166 PEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VF------------ 206 (297)
T ss_pred HHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CC------------
Confidence 34789999999999999999999997 799887432 112 22
Q ss_pred CCCCcceechHHHHhhhcC----------------------c---ccchhhHHhhcChhHHHHHHHHHHh--HHHHHHHH
Q 039410 234 DVSTPFVFDNFYYKNIKKG----------------------L---GLLATDQMLLLDSRTRAYVKRMADA--KTAFFKHF 286 (315)
Q Consensus 234 D~~tp~~fDn~Yy~~l~~~----------------------~---g~L~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~F 286 (315)
+.+|.+|||.||++|+.. . .++++|..|.+|++.|++|+.||.| +++||+||
T Consensus 207 -T~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF 285 (297)
T cd08200 207 -TDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDF 285 (297)
T ss_pred -cCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHH
Confidence 357899999999999841 1 1378999999999999999999998 99999999
Q ss_pred HHHHHHHHhCC
Q 039410 287 VVAMIKLSNIG 297 (315)
Q Consensus 287 a~A~~Km~~lg 297 (315)
++||.||+++.
T Consensus 286 ~~A~~Klmeld 296 (297)
T cd08200 286 VAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.2e-36 Score=307.85 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=177.2
Q ss_pred HHHHHHHHHH---HHhCCCchhhhHHHHhhccCC-------CCCCce-EEecCCCCCccccCcccC--CCCCccchHHHH
Q 039410 26 KIIYNVASQK---LLEAPVTAAGALRIFFHDCFV-------EGCDAS-VLIASSKTNKAERDSEIN--LSLPGDGYEVFF 92 (315)
Q Consensus 26 ~~Vr~~v~~~---~~~~~~~a~~llRL~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N--~gL~~~~~~~i~ 92 (315)
++|+++|+.. +.......+.||||+||++.+ ||++|+ |.|. +|++++.| .+| .+.+.+++
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL-~~vl~~Le 500 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRL-AKVLAVLE 500 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHH-HHHHHHHH
Confidence 3456666654 445566789999999999975 899999 7774 79999999 899 57899999
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHhHhHHhhc---CCC--ccccCCCCCCCCCCccccccCCCCC---------------C
Q 039410 93 RAKRALELQCPGIVSCADIMAIATRDLVHLA---GGP--RWEVPKGRRDGLISKASRVEGNLPH---------------V 152 (315)
Q Consensus 93 ~iK~~le~~cp~~VS~ADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP~---------------p 152 (315)
.||+++.. ..||+||+|+||+.+|||.+ ||| .|+|.+||.|++.... ++++..|. .
T Consensus 501 ~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~ 576 (716)
T TIGR00198 501 KIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYA 576 (716)
T ss_pred HHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhcccccc
Confidence 99998732 25999999999999999998 998 5799999999987653 23333321 1
Q ss_pred CCCHHHHHHHHHHCCCChhhhHhhhcc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCcccc
Q 039410 153 NQTISQTISLFKSKGLSTLDMVALSGG-HTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVA 231 (315)
Q Consensus 153 ~~~~~~l~~~F~~~Gl~~~e~VaL~Ga-HtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~ 231 (315)
......|++.|.++|||+.|||||+|| |++|+.|..+ +.| |+
T Consensus 577 ~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~~---------- 619 (716)
T TIGR00198 577 VTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG--------------------VF---------- 619 (716)
T ss_pred CCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC--------------------CC----------
Confidence 123567899999999999999999998 5999998532 112 11
Q ss_pred ccCCCCcceechHHHHhhhcC----------------------c-cc--chhhHHhhcChhHHHHHHHHHHhH--HHHHH
Q 039410 232 LNDVSTPFVFDNFYYKNIKKG----------------------L-GL--LATDQMLLLDSRTRAYVKRMADAK--TAFFK 284 (315)
Q Consensus 232 ~lD~~tp~~fDn~Yy~~l~~~----------------------~-g~--L~sD~~L~~d~~t~~~V~~yA~d~--~~F~~ 284 (315)
+.+|.+|||.||++|+.. . .+ ..+|..|.+|++.|++|+.||.|+ ++|++
T Consensus 620 ---T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~ 696 (716)
T TIGR00198 620 ---TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVK 696 (716)
T ss_pred ---cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHH
Confidence 257889999999998861 1 12 378999999999999999999997 89999
Q ss_pred HHHHHHHHHHhCC
Q 039410 285 HFVVAMIKLSNIG 297 (315)
Q Consensus 285 ~Fa~A~~Km~~lg 297 (315)
||++||.|+++++
T Consensus 697 DF~~Aw~Klm~ld 709 (716)
T TIGR00198 697 DFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.2e-36 Score=301.74 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=181.0
Q ss_pred HHHHHHHHHhCCCchhhhHHHHhhccCC-------CCCCce-EEecCCCCCccccCcccCC--CCCccchHHHHHHHHHH
Q 039410 29 YNVASQKLLEAPVTAAGALRIFFHDCFV-------EGCDAS-VLIASSKTNKAERDSEINL--SLPGDGYEVFFRAKRAL 98 (315)
Q Consensus 29 r~~v~~~~~~~~~~a~~llRL~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~--gL~~~~~~~i~~iK~~l 98 (315)
-..+++.+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +| .+.+++++.||+++
T Consensus 441 i~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L-~~vl~~LE~Ik~~f 513 (726)
T PRK15061 441 IAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQL-AKVLAVLEGIQAEF 513 (726)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHH-HHHHHHHHHHHHHH
Confidence 3567777777777899999999999975 899999 8775 799999998 89 57899999999998
Q ss_pred HhhCC--CCCcHHHHHHHHhHhHHhhc---CC--CccccCCCCCCCCCCccccccC---CCCCCC------------CCH
Q 039410 99 ELQCP--GIVSCADIMAIATRDLVHLA---GG--PRWEVPKGRRDGLISKASRVEG---NLPHVN------------QTI 156 (315)
Q Consensus 99 e~~cp--~~VS~ADilalAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~~---~lP~p~------------~~~ 156 (315)
+..-. ..||+||+|+||+.+|||.+ || |.||+.+||.|++.... ++++ .+|.+. ...
T Consensus 514 ~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e 592 (726)
T PRK15061 514 NAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPE 592 (726)
T ss_pred hhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHH
Confidence 65321 24999999999999999988 68 99999999999987643 2322 456543 134
Q ss_pred HHHHHHHHHCCCChhhhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCC
Q 039410 157 SQTISLFKSKGLSTLDMVALSGGH-TIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDV 235 (315)
Q Consensus 157 ~~l~~~F~~~Gl~~~e~VaL~GaH-tiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~ 235 (315)
..|++.|.++|||+.|||||+||| ++|..|..+ +.| |+ +
T Consensus 593 ~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~G--------------------~~-------------T 632 (726)
T PRK15061 593 ELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VF-------------T 632 (726)
T ss_pred HHHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CC-------------c
Confidence 789999999999999999999997 788887432 112 11 3
Q ss_pred CCcceechHHHHhhhcC----------------------c-cc--chhhHHhhcChhHHHHHHHHHHh--HHHHHHHHHH
Q 039410 236 STPFVFDNFYYKNIKKG----------------------L-GL--LATDQMLLLDSRTRAYVKRMADA--KTAFFKHFVV 288 (315)
Q Consensus 236 ~tp~~fDn~Yy~~l~~~----------------------~-g~--L~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~ 288 (315)
.+|.+|||.||+||+.- . .+ +++|..|.+|++.|++|+.||.| +++|++||++
T Consensus 633 ~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~ 712 (726)
T PRK15061 633 DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVA 712 (726)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHH
Confidence 57899999999999841 0 11 57899999999999999999999 9999999999
Q ss_pred HHHHHHhCC
Q 039410 289 AMIKLSNIG 297 (315)
Q Consensus 289 A~~Km~~lg 297 (315)
||.|+++++
T Consensus 713 Aw~Kvmeld 721 (726)
T PRK15061 713 AWTKVMNLD 721 (726)
T ss_pred HHHHHHhCC
Confidence 999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-33 Score=270.05 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHhCC--------CchhhhHHHHhhccCC-------CCCCce-EEecCCCCCccccCcccCCCCCccchH
Q 039410 26 KIIYNVASQKLLEAP--------VTAAGALRIFFHDCFV-------EGCDAS-VLIASSKTNKAERDSEINLSLPGDGYE 89 (315)
Q Consensus 26 ~~Vr~~v~~~~~~~~--------~~a~~llRL~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~gL~~~~~~ 89 (315)
..|..+++..+.... ..+|.+|||+||-+++ ||..+. ..+ .++..||.|.+| ++++.
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRF------aPlnSWPDN~nL-DKarR 142 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNANL-DKARR 142 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceec------ccccCCCcccch-HHHHH
Confidence 355666666666542 5799999999999975 454444 333 578899999999 78999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccc--------------------------
Q 039410 90 VFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKAS-------------------------- 143 (315)
Q Consensus 90 ~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------------------------- 143 (315)
++.+||+++ ++.||+||+|+|++.+|++.+|++.+.+..||.|...+...
T Consensus 143 LLWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Pla 218 (730)
T COG0376 143 LLWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLA 218 (730)
T ss_pred HhhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchh
Confidence 999999987 77899999999999999999999999999999998776540
Q ss_pred -----------cccCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cccccccccccccccccccCCCCCCCCCCCCHHH
Q 039410 144 -----------RVEGNLPHVNQTISQTISLFKSKGLSTLDMVALS-GGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDF 211 (315)
Q Consensus 144 -----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~ 211 (315)
+-.+..|+|..+..+++..|+||++|++|+|||+ ||||+|++|...-.+- -.++|.--+--
T Consensus 219 avqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie 291 (730)
T COG0376 219 AVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIE 291 (730)
T ss_pred hheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchh
Confidence 1135689999999999999999999999999998 6999999997642111 12556444333
Q ss_pred HHHHh--ccCCCCCCCCCccccccC---CCCcceechHHHHhhhcC----------------------------------
Q 039410 212 ARSLR--GSCPKSKKLDPTVVALND---VSTPFVFDNFYYKNIKKG---------------------------------- 252 (315)
Q Consensus 212 ~~~L~--~~Cp~~~~~~~~~~~~lD---~~tp~~fDn~Yy~~l~~~---------------------------------- 252 (315)
.+.|- ..|..+ .|.++.+..+. +.||++|||+||.+|+..
T Consensus 292 ~qGlGW~~~~g~G-~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~ 370 (730)
T COG0376 292 QQGLGWANTYGSG-KGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKH 370 (730)
T ss_pred hhccccccccCCC-cCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCccccc
Confidence 33333 233221 12222222232 468999999999999862
Q ss_pred -cccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Q 039410 253 -LGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIG 297 (315)
Q Consensus 253 -~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 297 (315)
-.||.+|.+|.-||..+++.++|..||+.|.+.|++||-||.+-.
T Consensus 371 ~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 371 GPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred CceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 258999999999999999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2e-14 Score=141.07 Aligned_cols=216 Identities=22% Similarity=0.287 Sum_probs=156.1
Q ss_pred HHHHHHHHhCCCchhhhHHHHhhccCC-------CCCCce-EEecCCCCCccccCcccCC--CCCccchHHHHHHHHHHH
Q 039410 30 NVASQKLLEAPVTAAGALRIFFHDCFV-------EGCDAS-VLIASSKTNKAERDSEINL--SLPGDGYEVFFRAKRALE 99 (315)
Q Consensus 30 ~~v~~~~~~~~~~a~~llRL~FHDc~~-------~GcDgS-ill~~~~~~~~E~~~~~N~--gL~~~~~~~i~~iK~~le 99 (315)
..++..+.+..-....|+-.+|..+.+ ||.+|. |.|. +.++|+.|. -| .+.+.+++.|++.++
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l-~kvl~~le~iq~~fn 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAEL-AKVLAVLEKIQKEFN 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHH-HHHHHHHHHHHHHhc
Confidence 356667777777789999999998864 789988 5564 689999995 45 256788899988886
Q ss_pred hhCCCCCcHHHHHHHHhHhHHhh---cCCCc--cccCCCCCCCCCCccccccCC--C-CC------------CCCCHHHH
Q 039410 100 LQCPGIVSCADIMAIATRDLVHL---AGGPR--WEVPKGRRDGLISKASRVEGN--L-PH------------VNQTISQT 159 (315)
Q Consensus 100 ~~cp~~VS~ADilalAa~~av~~---~GGP~--~~v~~GR~D~~~s~~~~~~~~--l-P~------------p~~~~~~l 159 (315)
..||.||+|+|++..|||. ..|-. +|+.+||.|+...... ++.. | |- ...+..-|
T Consensus 525 ----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~L 599 (730)
T COG0376 525 ----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELL 599 (730)
T ss_pred ----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHH
Confidence 3599999999999999996 36654 4677899999776432 2111 1 11 11124457
Q ss_pred HHHHHHCCCChhhhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCc
Q 039410 160 ISLFKSKGLSTLDMVALSGGH-TIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTP 238 (315)
Q Consensus 160 ~~~F~~~Gl~~~e~VaL~GaH-tiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp 238 (315)
++.-+-++||.-||++|+||- .+|..+ .| ....++- ..|
T Consensus 600 vDkAqlL~LtapemtVLiGGlRvLg~n~-----------g~---------------------------s~~GVfT--~~p 639 (730)
T COG0376 600 VDKAQLLTLTAPEMTVLIGGLRVLGANY-----------GG---------------------------SKHGVFT--DRP 639 (730)
T ss_pred HHHHHHhccCCccceEEEcceEeeccCC-----------CC---------------------------Cccceec--cCc
Confidence 778888999999999999864 444332 11 1112232 357
Q ss_pred ceechHHHHhhhcC-------------------c-c-----cchhhHHhhcChhHHHHHHHHHHh--HHHHHHHHHHHHH
Q 039410 239 FVFDNFYYKNIKKG-------------------L-G-----LLATDQMLLLDSRTRAYVKRMADA--KTAFFKHFVVAMI 291 (315)
Q Consensus 239 ~~fDn~Yy~~l~~~-------------------~-g-----~L~sD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~A~~ 291 (315)
.+..|.||.||+.- + | --..|..+-+++..|.+.+.||.+ +++|.+||+.||.
T Consensus 640 g~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 640 GVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred ccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 77777788777741 1 2 135677777889999999999985 8999999999999
Q ss_pred HHHhCC
Q 039410 292 KLSNIG 297 (315)
Q Consensus 292 Km~~lg 297 (315)
|..++.
T Consensus 720 kVMn~D 725 (730)
T COG0376 720 KVMNLD 725 (730)
T ss_pred HHhccc
Confidence 998864
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=78.13 E-value=36 Score=33.05 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=45.6
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCCCC---CCCHHHHHHHHHHCCCC----------h
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLPHV---NQTISQTISLFKSKGLS----------T 170 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~----------~ 170 (315)
|.|-=.+.|....|+. .+|-..|..+.||.+...-.........+.. -..+.++..+|++.|+. .
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 5555445555555554 4687888999999966432211111111211 23477888899888864 5
Q ss_pred hhhHhhhccccc
Q 039410 171 LDMVALSGGHTI 182 (315)
Q Consensus 171 ~e~VaL~GaHti 182 (315)
.|+..|.|+|.+
T Consensus 241 ~qi~~laG~D~l 252 (333)
T PTZ00411 241 GEILELAGCDKL 252 (333)
T ss_pred HHHHHHHCCCEE
Confidence 667777777643
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=70.31 E-value=89 Score=31.05 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=45.6
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCCCCC----CCHHHHHHHHHHCCCC----------
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLPHVN----QTISQTISLFKSKGLS---------- 169 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~---------- 169 (315)
|.|-=.+.+....|+. .+|-..|..+.||.|...-.... ...+|... ..+.++..+|++.|+.
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn 233 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRN 233 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCC
Confidence 5555555666666654 46888899999998874322111 11244332 2477888899888764
Q ss_pred hhhhHhhhcccc
Q 039410 170 TLDMVALSGGHT 181 (315)
Q Consensus 170 ~~e~VaL~GaHt 181 (315)
..++..|.|+|.
T Consensus 234 ~~~v~~laG~d~ 245 (391)
T PRK12309 234 IGEIIELAGCDL 245 (391)
T ss_pred HHHHHHHHCCCe
Confidence 455555555553
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=57.66 E-value=1.6e+02 Score=28.50 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=75.3
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCC----CCCCCHHHHHHHHHHCCCC----------
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLP----HVNQTISQTISLFKSKGLS---------- 169 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~---------- 169 (315)
|+|-=.+.|....|+. .+|-..|..+.||.+-..-..... ...+ ++...+.++..+|++.|+.
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn 227 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRN 227 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCC
Confidence 4444444555555544 468888999999987632211100 0111 1234577888899998875
Q ss_pred hhhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCC-CCCCCccccccCCCCcceechHHHHh
Q 039410 170 TLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKS-KKLDPTVVALNDVSTPFVFDNFYYKN 248 (315)
Q Consensus 170 ~~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~-~~~~~~~~~~lD~~tp~~fDn~Yy~~ 248 (315)
..|+.+|.|+|.+ ++.|...+.|...-... ..-........+ ..|..+|...|+.
T Consensus 228 ~~qv~~laG~d~~-----------------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~ 283 (317)
T TIGR00874 228 KEEILALAGCDRL-----------------------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRF 283 (317)
T ss_pred HHHHHHHHCCCeE-----------------------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHH
Confidence 4555555555532 34555555555421100 000000011111 2345678888875
Q ss_pred hhcCcccchhhHHhhcChhHHHHHHHHHHhHHHHHHH
Q 039410 249 IKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKH 285 (315)
Q Consensus 249 l~~~~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~ 285 (315)
.++..+| .-.+...-++.|+.|+.....-
T Consensus 284 ~~~~d~m--------a~ekl~~gir~F~~d~~~Le~~ 312 (317)
T TIGR00874 284 LHNEDAM--------ATEKLAEGIRKFAADQEKLEKL 312 (317)
T ss_pred HhCCCcc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322 1123455578888887765543
No 22
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=55.82 E-value=9.5 Score=29.27 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 039410 281 AFFKHFVVAMIKLSNIGVK 299 (315)
Q Consensus 281 ~F~~~Fa~A~~Km~~lgv~ 299 (315)
+....|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4568899999999999854
No 23
>PRK05269 transaldolase B; Provisional
Probab=51.09 E-value=1.6e+02 Score=28.43 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCC---CCCCCCHHHHHHHHHHCCCChh
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNL---PHVNQTISQTISLFKSKGLSTL 171 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~l---P~p~~~~~~l~~~F~~~Gl~~~ 171 (315)
|+|-=.+.|....|+. .+|-..+..+.||.|...-........- -++-..+.++..+|++.|+..+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 5555545555555544 4688888999999986422110000001 1123457888899999987654
No 24
>PRK12346 transaldolase A; Provisional
Probab=41.99 E-value=31 Score=33.26 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=47.0
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCCCC----CCCHHHHHHHHHHCCCC----------
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLPHV----NQTISQTISLFKSKGLS---------- 169 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~---------- 169 (315)
|+|-=.+.|....|+. .+|-..|..+.||.|........ ...++.. ...+.++..+|++.|+.
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~-~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKP-MDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccc-cccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 6666656666666655 46888899999999874322111 1112221 23477888899888864
Q ss_pred hhhhHhhhcccc
Q 039410 170 TLDMVALSGGHT 181 (315)
Q Consensus 170 ~~e~VaL~GaHt 181 (315)
..|+.+|.|+|.
T Consensus 229 ~~qi~alaG~d~ 240 (316)
T PRK12346 229 TEQILALAGCDR 240 (316)
T ss_pred HHHHHHHhCCCE
Confidence 466666776664
No 25
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=33.79 E-value=50 Score=26.03 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=33.5
Q ss_pred HhhcChhHHHHHHHH--HHhHHHHHHHHHHHHHHHHhCCCCCCCCCcccccc
Q 039410 261 MLLLDSRTRAYVKRM--ADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDC 310 (315)
Q Consensus 261 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C 310 (315)
.+++|.+||+.|+.. |.|.++.-+.|-.||. |..--++..+||.+
T Consensus 35 kiLTdERTRRQvnNLRHATNSELLCEAFLHA~T-----GQPLP~D~Dl~Kd~ 81 (105)
T PRK05264 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDEDLRKER 81 (105)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc-----CCCCCChhhhhhcC
Confidence 567899999999865 8899999999999885 33334455555544
No 26
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=32.72 E-value=53 Score=25.70 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=33.6
Q ss_pred HhhcChhHHHHHHHH--HHhHHHHHHHHHHHHHHHHhCCCCCCCCCcccccc
Q 039410 261 MLLLDSRTRAYVKRM--ADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDC 310 (315)
Q Consensus 261 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C 310 (315)
.+++|.+||+.|+.. |.|.++.-+.|-.||. |..--++..+||.+
T Consensus 34 kiLTdERTRRQvnnlRHATNSELLCEAFLHAfT-----GQPLP~D~Dl~K~~ 80 (103)
T cd00490 34 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT-----GQPLPDDADLRKER 80 (103)
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc-----CCCCCChhhhhhcC
Confidence 567899999999865 8899999999999885 33334555555554
No 27
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=35 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHCCCChhhhHhhh-ccccccccc
Q 039410 155 TISQTISLFKSKGLSTLDMVALS-GGHTIGFSH 186 (315)
Q Consensus 155 ~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~h 186 (315)
++.+.+-.|+++|+++.++=+++ -+|-||+++
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 45556668999999999975554 899999986
No 28
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=25.24 E-value=49 Score=31.88 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=38.9
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCCC----CCCCHHHHHHHHHHCCCCh
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLPH----VNQTISQTISLFKSKGLST 170 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~ 170 (315)
|+|-=.+.|....|+. .+|-..|..+.||.|-..-..... ...+. +...+.++..+|++.|+.+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T 218 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKT 218 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCc
Confidence 6666556666666654 467788899999998642211000 01111 2234778888999988754
No 29
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.71 E-value=74 Score=29.53 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhHhHHh--hcCCCccccCCCCCCCCCCccccccCCCCCCC--C---CHHHHHHHHHHCCCCh
Q 039410 106 VSCADIMAIATRDLVH--LAGGPRWEVPKGRRDGLISKASRVEGNLPHVN--Q---TISQTISLFKSKGLST 170 (315)
Q Consensus 106 VS~ADilalAa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~--~---~~~~l~~~F~~~Gl~~ 170 (315)
|++-=.+++....|+. .+|-..+.++.||.|...-......+ +++. . .+.++.+.|++.|...
T Consensus 140 I~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~--~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 140 ISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIG--LDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccc--cccccCcHHHHHHHHHHHHHHhCCCC
Confidence 5555555566655554 46778889999999986653222111 2221 2 2446777777777643
No 30
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=24.54 E-value=1e+02 Score=23.92 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=26.0
Q ss_pred HhhcChhHHHHHHHH--HHhHHHHHHHHHHHHH
Q 039410 261 MLLLDSRTRAYVKRM--ADAKTAFFKHFVVAMI 291 (315)
Q Consensus 261 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~ 291 (315)
.+++|.+||+.|+.. |.|.+..-+.|-.||.
T Consensus 35 ~ilt~ertrrq~~nlrhatnsellceaflhaft 67 (105)
T COG3060 35 KILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHc
Confidence 567899999999865 7789999999988874
No 31
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=23.01 E-value=70 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCChhhhHhhhccc
Q 039410 156 ISQTISLFKSKGLSTLDMVALSGGH 180 (315)
Q Consensus 156 ~~~l~~~F~~~Gl~~~e~VaL~GaH 180 (315)
.+.|-..|++.||+.++|-.|+-+.
T Consensus 10 GDtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 10 GDTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp T--HHHHHHHTT--HHHHHHHHHHG
T ss_pred CCcHHHHHHHcCCCHHHHHHHHhcc
Confidence 4678899999999999999998655
No 32
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=22.89 E-value=50 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 039410 275 MADAKTAFFKHFVVAMIKL 293 (315)
Q Consensus 275 yA~d~~~F~~~Fa~A~~Km 293 (315)
|-..|++||+.|+..+.|=
T Consensus 38 Y~~~QskFFe~~A~~~tkR 56 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKR 56 (90)
T ss_pred CChHHHHHHHHHhhhhhHH
Confidence 6667999999999988774
No 33
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=22.55 E-value=50 Score=25.89 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=26.0
Q ss_pred HhhcChhHHHHHHHH--HHhHHHHHHHHHHHHH
Q 039410 261 MLLLDSRTRAYVKRM--ADAKTAFFKHFVVAMI 291 (315)
Q Consensus 261 ~L~~d~~t~~~V~~y--A~d~~~F~~~Fa~A~~ 291 (315)
.+++|.+||+.|+.. |.|.++.-+.|-.||.
T Consensus 34 kvLtdERTrRQvnNLRHATNSeLLcEAFLHAfT 66 (104)
T PF01340_consen 34 KVLTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (104)
T ss_dssp HHHHHHHHHHHHTTBSS-SHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 567899999999765 8899999999999986
Done!