BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039411
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 112/226 (49%), Gaps = 36/226 (15%)
Query: 1 MKTYQLNYHLNSTGVLDGNTVAMMTRPRCGVADIVNGTTRMRSGMKSHQHGANHFHTVSH 60
+K Q + L TG D T+ +M +PRCGV D V+
Sbjct: 45 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPD------------------------VAQ 80
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
+ G PRW +HLTY TP A+ +A+ +AFQ W+ ++ F++ +
Sbjct: 81 FVLTEGNPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQ 137
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L
Sbjct: 138 ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHR 195
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
VA HE+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 196 VAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 241
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 106/220 (48%), Gaps = 39/220 (17%)
Query: 10 LNSTGVLDGNTVAMMTRPRCGVADIVNGTTRMRSGMKSHQHGANHFHTVSHYEFFPGRPR 69
L TG LD +T+ +M +PRCGV D V H+ FPG P+
Sbjct: 56 LEVTGKLDSDTLEVMRKPRCGVPD------------------------VGHFRTFPGIPK 91
Query: 70 WPPSNSHLTYAFL---PGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQR 125
W +HLTY + P P +A++ AV +A + W ++ FS+ + A++ ISF
Sbjct: 92 W--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAV 148
Query: 126 GWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHL 182
HGD PFDG G +AHA P GI +D DEQW +L VA HEIGH
Sbjct: 149 REHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHS 206
Query: 183 LGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
LGL HS A+MY + L DD+ GI++LY
Sbjct: 207 LGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 246
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 14/163 (8%)
Query: 65 PGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG PRW N+HLTY TP + A+ +AFQ W+ +S F++ + A++
Sbjct: 5 PGNPRW--ENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE-GQADIM 61
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVALH 177
ISF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA H
Sbjct: 62 ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFR--DYNLYRVAAH 119
Query: 178 EIGHLLGLDHSLVEGAIMYA-YIDPGATKGLHTDDVQGIRALY 219
E+GH LGL HS GA+MY YI G + L DD+ GI+A+Y
Sbjct: 120 ELGHSLGLSHSTDIGALMYPNYIYTGDVQ-LSQDDIDGIQAIY 161
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HLTY TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 6 GNPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMI 62
Query: 122 SFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE
Sbjct: 63 SFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHE 120
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 121 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 161
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HLTY TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 5 GNPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMI 61
Query: 122 SFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE
Sbjct: 62 SFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHE 119
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 120 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 160
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HL Y TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 5 GNPRW--EQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSE-GQADIMI 61
Query: 122 SFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE
Sbjct: 62 SFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHE 119
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 120 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 160
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 89/159 (55%), Gaps = 12/159 (7%)
Query: 68 PRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISF 123
PRW +HLTY TP A+ +A+ +AFQ W+ ++ F++ + A++ ISF
Sbjct: 2 PRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISF 58
Query: 124 QRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHEIG 180
RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE+G
Sbjct: 59 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELG 116
Query: 181 HLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
H LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 117 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 155
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HL Y TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 4 GNPRW--EQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMI 60
Query: 122 SFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE
Sbjct: 61 SFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHE 118
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 119 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 159
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HL Y TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 4 GNPRW--EQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMI 60
Query: 122 SFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE
Sbjct: 61 SFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHE 118
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 119 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 159
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 12/161 (7%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G PRW +HLTY TP A+ +A+ +AFQ W+ ++ F++ + A++ I
Sbjct: 6 GNPRW--EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMI 62
Query: 122 SFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF RG H D+SPFDG GG +AHA P GG +D DE+W R ++L VA H
Sbjct: 63 SFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHA 120
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+GH LGL HS GA+MY L DD+ GI+A+Y
Sbjct: 121 LGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 161
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 82/153 (53%), Gaps = 16/153 (10%)
Query: 73 SNSHLTYAFLPGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSS 132
S+SHLT E NA+ AF W+ S F Q + A++KI +++G HGD
Sbjct: 20 SSSHLT-------TTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGY 72
Query: 133 PFDGRGGTIAHA--APPRGGIF----DYDADEQWAVGARPGAFDLETVALHEIGHLLGLD 186
PFDG G +AHA PP GG + +D DE W++ DL TVA HEIGHLLG++
Sbjct: 73 PFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSINGS--GIDLITVAAHEIGHLLGIE 130
Query: 187 HSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
HS V A+MY Y G + L DD + LY
Sbjct: 131 HSNVSSALMYPYY-TGIKRQLDNDDCLAVWDLY 162
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 82/153 (53%), Gaps = 16/153 (10%)
Query: 73 SNSHLTYAFLPGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSS 132
S+SHLT E NA+ AF W+ S F Q + A++KI +++G HGD
Sbjct: 20 SSSHLT-------TTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGY 72
Query: 133 PFDGRGGTIAHA--APPRGGIF----DYDADEQWAVGARPGAFDLETVALHEIGHLLGLD 186
PFDG G +AHA PP GG + +D DE W++ DL TVA HEIGHLLG++
Sbjct: 73 PFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSINGS--GIDLITVAAHEIGHLLGIE 130
Query: 187 HSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
HS V A+MY Y G + L DD + LY
Sbjct: 131 HSNVSSALMYPYY-TGIKRQLDNDDCLAVWDLY 162
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP---AEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FFP +P+W + +TY + TP E ++ A RAFQ W+ ++ +FS+ D
Sbjct: 1 YNFFPRKPKW--DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I+F R HGD PFDG+ G +AHA P GG +D DE W +G G + L
Sbjct: 58 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVG-YSLFL 116
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
VA H GH +GL+HS GA+M L DD++GI+ LY
Sbjct: 117 VAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELY 162
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 73 SNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWH 128
+HLTY TP A+ +A+ +AFQ W+ ++ F++ + A++ ISF RG H
Sbjct: 3 EQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH 61
Query: 129 GDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVGARPGAFDLETVALHEIGHLLGL 185
D+SPFDG GG +AHA P GG +D DE+W R ++L VA HE+GH LGL
Sbjct: 62 RDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGL 119
Query: 186 DHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
HS GA+MY L DD+ GI+A+Y
Sbjct: 120 SHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 153
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S ++LTY + TP +E A +AF+ W+ ++ F++ D T
Sbjct: 1 YNVFPRTLKW--SQTNLTYRIVNYTPDMSHSEVEKAFRKAFKVWSDVTPLNFTRIYDGT- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFI 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE+GH LGLDHS GA+M+ Y G + L DDVQGI+ LY
Sbjct: 116 VAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLY 163
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP---AEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FFP +P+W + +TY + TP E ++ A RAFQ W+ ++ +FS+ D
Sbjct: 2 YNFFPRKPKW--DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GE 58
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I+F R HGD PFDG+ G +AHA P GG +D DE W + + L
Sbjct: 59 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTNTS--ANYSLFL 116
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
VA HE GH +GL+HS GA+M L DD++GI+ LY
Sbjct: 117 VAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELY 162
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 58 VSHYEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQD 113
++ Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 MASYNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD 58
Query: 114 YTNANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFD 170
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++
Sbjct: 59 GI-ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYN 115
Query: 171 LETVALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
L VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 166
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMY-AYIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D
Sbjct: 1 YNVFPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI- 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L
Sbjct: 58 ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
VA HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 116 VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 66 GRPRWPPSNSHLTYAFLPGTPA----EAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G P+W + LTY TP+ E AV A Q W++ F + A++ I
Sbjct: 1 GEPKW--KKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMI 57
Query: 122 SFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVALHE 178
SF+ G HGDS PFDG GT+AHA P GG +D E+W +G F+L TVA HE
Sbjct: 58 SFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTN--GFNLFTVAAHE 115
Query: 179 IGHLLGLDHSLVEGAIMYAYIDPGATKGLH--TDDVQGIRALY 219
GH LGL HS A+MY G H DDV+GI+ALY
Sbjct: 116 FGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALY 158
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 91 NAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGG 150
+A RAF W+A++ F++ +A++ I F HGD PFDG+ G +AHA PP G
Sbjct: 34 DAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 92
Query: 151 I---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGL 207
I +D DE W++G G + L VA HE GH LGLDHS V A+MY L
Sbjct: 93 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPL 151
Query: 208 HTDDVQGIRALY 219
H DDV GIR LY
Sbjct: 152 HKDDVNGIRHLY 163
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 64 FPGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANL 119
FP +W S +LTY + TP +E A +AF+ W+ ++ F++ D A++
Sbjct: 4 FPRTLKW--SKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI-ADI 60
Query: 120 KISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVAL 176
ISF HGD PFDG G +AHA PP GG +D DE W ++ ++L VA
Sbjct: 61 MISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSK--GYNLFLVAA 118
Query: 177 HEIGHLLGLDHSLVEGAIMYA-YIDPGATK-GLHTDDVQGIRALY 219
HE GH LGLDHS GA+M+ Y G + L DDVQGI++LY
Sbjct: 119 HEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 163
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 67 RPRWPPSNSHLTYAFLPGTP---AEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKIS 122
+P+W + +TY + TP E ++ A RAFQ W+ ++ +FS+ D A++ I+
Sbjct: 2 KPKW--DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GEADIMIN 58
Query: 123 FQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVALHEI 179
F R HGD PFDG+ G +AHA P GG +D DE W++G G + L VA HE
Sbjct: 59 FGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLGKGVG-YSLFLVAAHEF 117
Query: 180 GHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
GH +GL+HS GA+M L DD++GI+ LY
Sbjct: 118 GHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELY 157
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 91 NAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGG 150
+A RAF W+A++ F++ +A++ I F HGD PFDG+ G +AHA PP G
Sbjct: 34 DAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 92
Query: 151 I---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGL 207
I +D DE W++G G + L VA H+ GH LGLDHS V A+MY L
Sbjct: 93 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPL 151
Query: 208 HTDDVQGIRALY 219
H DDV GIR LY
Sbjct: 152 HKDDVNGIRHLY 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 91 NAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGG 150
+A RAF W+A++ F++ +A++ I F HGD PFDG+ G +AHA PP G
Sbjct: 30 DAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPG 88
Query: 151 I---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGL 207
I +D DE W++G G + L VA H+ GH LGLDHS V A+MY L
Sbjct: 89 IQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPL 147
Query: 208 HTDDVQGIRALY 219
H DDV GIR LY
Sbjct: 148 HKDDVNGIRHLY 159
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 15/166 (9%)
Query: 64 FPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANL 119
FPG P+W +HLTY + P P +A++ A+ +A + W ++ FS+ + A++
Sbjct: 4 FPGMPKW--RKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 120 KISFQRGWHGDSSPFDGRGGTIAHAAPPRGGIF---DYDADEQWAVGARPGAFDLETVAL 176
ISF HGD+ FDG G ++AHA PP G++ +D DE+W A +L VA
Sbjct: 61 MISFAVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAA 118
Query: 177 HEIGHLLGLDHSLVEGAIMYAYIDPG---ATKGLHTDDVQGIRALY 219
HE+GH LGL HS A+MY + A L DDV GI++LY
Sbjct: 119 HELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLY 164
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 69 RWPPSNSHLTYAFLPGTPA----EAINAVGRAFQTWAAISHFKFSQT------QDYTNAN 118
+W + H+TY+ TP E A+ RAF W ++ F + + +
Sbjct: 3 KW--QHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVD 60
Query: 119 LKISFQRGWHGDSSPFDGRGGTIAHA---APPRGGIFDYDADEQWAVG-ARPGAFDLETV 174
+ I F G+HGDSSPFDG GG +AHA P GG +D+DE W +G DL V
Sbjct: 61 ITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLV 120
Query: 175 ALHEIGHLLGLDHSLVEGAIM---YAYIDPGATKGLHTDDVQGIRALY 219
A+HE+GH LGL+HS AIM Y Y++ K L DD+QGI+ +Y
Sbjct: 121 AVHELGHALGLEHSNDPTAIMAPFYQYMETDNFK-LPNDDLQGIQKIY 167
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 15/166 (9%)
Query: 64 FPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANL 119
FPG P+W +HLTY + P P +A++ A+ +A + W ++ FS+ + A++
Sbjct: 4 FPGMPKW--RKTHLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE-GEADI 60
Query: 120 KISFQRGWHGDSSPFDGRGGTIAHAAPPRGGIF---DYDADEQWAVGARPGAFDLETVAL 176
ISF HGD FDG G ++AHA PP G++ +D DE+W A +L VA
Sbjct: 61 MISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAA 118
Query: 177 HEIGHLLGLDHSLVEGAIMYAYIDPG---ATKGLHTDDVQGIRALY 219
HE+GH LGL HS A+MY + A L DDV GI++LY
Sbjct: 119 HELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLY 164
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 34/170 (20%)
Query: 1 MKTYQLNYHLNSTGVLDGNTVAMMTRPRCGVADIVNGTTRMRSGMKSHQHGANHFHTVSH 60
+K Q + L TG LD NT+ M +PRCG D+ N
Sbjct: 43 LKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------------ 78
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP---AEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FFP +P+W + +TY + TP E ++ A RAFQ W+ ++ +FS+ D
Sbjct: 79 YNFFPRKPKW--DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GE 135
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVG 163
A++ I+F R HGD PFDG+ G +AHA P GG +D DE W +G
Sbjct: 136 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLG 185
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 153 DYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDV 212
+YD D +W G + L VA H+ GH +GL+HS GA+M L DD+
Sbjct: 349 NYDDDRKWGFCPDQG-YSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDI 407
Query: 213 QGIRALY 219
+GI+ LY
Sbjct: 408 KGIQELY 414
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 34/170 (20%)
Query: 1 MKTYQLNYHLNSTGVLDGNTVAMMTRPRCGVADIVNGTTRMRSGMKSHQHGANHFHTVSH 60
+K Q + L TG LD NT+ M +PRCG D+ N
Sbjct: 45 LKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN------------------------ 80
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGTP---AEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FFP +P+W + +TY + TP E ++ A RAFQ W+ ++ +FS+ D
Sbjct: 81 YNFFPRKPKW--DKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHD-GE 137
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVG 163
A++ I+F R HGD PFDG+ G +AHA P GG +D DE W +G
Sbjct: 138 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLG 187
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 153 DYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDV 212
+YD D +W G + L VA H GH +GL+HS GA+M L DD+
Sbjct: 351 NYDDDRKWGFCPDQG-YSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDI 409
Query: 213 QGIRALY 219
+GI+ LY
Sbjct: 410 KGIQELY 416
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 16/165 (9%)
Query: 65 PGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P W ++TY + P E ++ A+ +AFQ W+ ++ KFS+ A++
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 62
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
+ F RG HGD FDG+GG +AHA P GI +D DE W G +L A+H
Sbjct: 63 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVH 120
Query: 178 EIGHLLGLDHSLVEGAIM---YAYIDPGATKGLHTDDVQGIRALY 219
EIGH LGL HS A+M Y Y+D + L DD++GI++LY
Sbjct: 121 EIGHSLGLGHSSDPKAVMFPTYKYVDINTFR-LSADDIRGIQSLY 164
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 65 PGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P W ++TY + P E ++ A+ +AFQ W+ ++ KFS+ A++
Sbjct: 6 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 62
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
+ F RG HGD FDG+GG +AHA P GI +D DE W G +L A+H
Sbjct: 63 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVH 120
Query: 178 EIGHLLGLDHSLVEGAIM---YAYIDPGATKGLHTDDVQGIRALYNN 221
EIGH LGL HS A+M Y Y+D + L DD++GI++LY +
Sbjct: 121 EIGHSLGLGHSSDPKAVMFPTYKYVDINTFR-LSADDIRGIQSLYGD 166
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 16/165 (9%)
Query: 65 PGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P W ++TY + P E ++ A+ +AFQ W+ ++ KFS+ A++
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 61
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
+ F RG HGD FDG+GG +AHA P GI +D DE W G +L A+H
Sbjct: 62 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVH 119
Query: 178 EIGHLLGLDHSLVEGAIM---YAYIDPGATKGLHTDDVQGIRALY 219
EIGH LGL HS A+M Y Y+D + L DD++GI++LY
Sbjct: 120 EIGHSLGLGHSSDPKAVMFPTYKYVDINTFR-LSADDIRGIQSLY 163
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 69 RWPPSNSHLTYAFL----PGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQ 124
RW ++ LTY L + V A Q W+ ++ F++ + A++ I F
Sbjct: 8 RWEKTD--LTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFA 64
Query: 125 RGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVALHEIGH 181
R WHGD+ PFDG GG +AHA P R G +D DE W +G G DL VA HE GH
Sbjct: 65 RYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGT-DLLQVAAHEFGH 123
Query: 182 LLGLDHSLVEGAIMYAYIDPGATKGLHTDDVQGIRALY 219
+LGL H+ A+M + L DD +GI+ LY
Sbjct: 124 VLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLY 161
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 65 PGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P+W +N LTY TP AE A+ AF+ W+ S F++ A++
Sbjct: 4 PGNPKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 60
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
I+F + HGD+SPFDG G +AHA P GI +DA+E W + ++L VA H
Sbjct: 61 IAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAH 118
Query: 178 EIGHLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
E GH LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 119 EFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 162
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 65 PGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P+W +N LTY TP AE A+ AF+ W+ S F++ A++
Sbjct: 5 PGNPKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 61
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
I+F + HGD+SPFDG G +AHA P GI +DA+E W + ++L VA H
Sbjct: 62 IAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAH 119
Query: 178 EIGHLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
E GH LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 120 EFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 163
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 14/164 (8%)
Query: 65 PGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P+W +N LTY TP AE A+ AF+ W+ S F++ A++
Sbjct: 5 PGNPKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADIN 61
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
I+F + HGD+SPFDG G +AHA P GI +DA+E W + ++L VA H
Sbjct: 62 IAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAH 119
Query: 178 EIGHLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
E GH LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 120 EFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 163
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 64 FPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANL 119
FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ + A++
Sbjct: 1 FPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADI 57
Query: 120 KISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVAL 176
ISF HGD PFDG G +AHA P GI +D DEQW +L VA
Sbjct: 58 MISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAA 115
Query: 177 HEIGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
H+IGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 HQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 161
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 11 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG 69
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 70 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 127
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 128 PTYKYVDINTFR-LSADDIRGIQSLY 152
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 10 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG 68
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 69 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 126
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 127 PTYKYVDINTFR-LSADDIRGIQSLY 151
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 16/165 (9%)
Query: 65 PGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P W ++TY + P E ++ A+ +AFQ W+ ++ KFS+ A++
Sbjct: 5 PGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 61
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
+ F RG HGD FDG+GG +AHA P GI +D DE W G +L A+H
Sbjct: 62 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVH 119
Query: 178 EIGHLLGLDHSLVEGAIM---YAYIDPGATKGLHTDDVQGIRALY 219
IGH LGL HS A+M Y Y+D + L DD++GI++LY
Sbjct: 120 AIGHSLGLGHSSDPKAVMFPTYKYVDINTFR-LSADDIRGIQSLY 163
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ + A++ + F RG HGD FDG+GG
Sbjct: 18 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGG 76
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 77 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 134
Query: 196 --YAYIDPGATKGLHTDDVQGIRALYNN 221
Y Y+D + L DD++GI++LY +
Sbjct: 135 PTYKYVDINTFR-LSADDIRGIQSLYGD 161
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 92 AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI 151
A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG +AHA P GI
Sbjct: 28 AIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGI 86
Query: 152 ---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM---YAYIDPGATK 205
+D DE W + G +L A+HEIGH LGL HS A+M Y Y+D +
Sbjct: 87 GGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFR 144
Query: 206 GLHTDDVQGIRALY 219
L DD++GI++LY
Sbjct: 145 -LSADDIRGIQSLY 157
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ + A++ + F RG HGD FDG+GG
Sbjct: 17 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDDHAFDGKGG 75
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 133
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 134 PTYKYVDINTFR-LSADDIRGIQSLY 158
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 16 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGG 74
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 132
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 133 PTYKYVDINTFR-LSADDIRGIQSLY 157
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
+ FPG P+W +HLTY + P P +A++ AV +A + W ++ FS+ +
Sbjct: 1 FRTFPGIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GE 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLET 173
A++ ISF HGD PFDG G +AHA P GI +D DEQW +L
Sbjct: 58 ADIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFL 115
Query: 174 VALHEIGHLLGLDHSLVEGAI---MYAYIDPGATKGLHTDDVQGIRALY 219
VA HEIGH LGL HS A+ +Y + L DD+ GI++LY
Sbjct: 116 VAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLY 164
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ + A++ + F RG HGD FDG+GG
Sbjct: 17 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGG 75
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 133
Query: 196 --YAYIDPGATKGLHTDDVQGIRALYNN 221
Y Y+D + L DD++GI++LY +
Sbjct: 134 PTYKYVDINTFR-LSADDIRGIQSLYGD 160
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ + A++ + F RG HGD FDG+GG
Sbjct: 16 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHGDFHAFDGKGG 74
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 132
Query: 196 --YAYIDPGATKGLHTDDVQGIRALYNN 221
Y Y+D + L DD++GI++LY +
Sbjct: 133 PTYKYVDINTFR-LSADDIRGIQSLYGD 159
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 11/148 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 16 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKGG 74
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+HEIGH LGL HS A+M
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMF 132
Query: 196 --YAYIDPGATKGLHTDDVQGIRALYNN 221
Y Y+D + L DD++GI++LY +
Sbjct: 133 PTYKYVDINTFR-LSADDIRGIQSLYGD 159
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 66 GRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G P+W +N LTY TP AE A+ AF+ W+ S F++ A++ I
Sbjct: 1 GNPKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINI 57
Query: 122 SFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHE 178
+F + HGD+SPFDG G +AHA P GI +DA+E W + ++L VA HE
Sbjct: 58 AFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAHE 115
Query: 179 IGHLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
GH LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 116 FGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 158
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 65 PGRPRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLK 120
PG P+W +N LTY TP AE A+ AF+ W+ S F+ A++
Sbjct: 3 PGGPKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQ-GEADIN 59
Query: 121 ISFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALH 177
I+F + HGD SPFDG G +AHA P GI +DA+E W + ++L VA H
Sbjct: 60 IAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAH 117
Query: 178 EIGHLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
E GH LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 118 EFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 161
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGT---PAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP P+W ++ +TY + T P ++ V +A W F + +
Sbjct: 1 YSLFPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I F RG HGDS PFDG G T+AHA P GG +D DE+W G+ G +
Sbjct: 58 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLY 116
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYI---DPGATKGLHTDDVQGIRALY 219
A HE+GH LG+ HS A+MY DP K L DD++GI+ LY
Sbjct: 117 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFK-LSQDDIKGIQKLY 164
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 66 GRPRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G P+W +HLTY + P P +A++ AV +A + W ++ FS+ + A++ I
Sbjct: 1 GIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMI 57
Query: 122 SFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHE 178
SF HGD PFDG G +AHA P GI +D DEQW +L VA HE
Sbjct: 58 SFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHE 115
Query: 179 IGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
IGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 IGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 159
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGT---PAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP P+W ++ +TY + T P ++ V +A W F + +
Sbjct: 2 YSLFPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 58
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I F RG HGDS PFDG G T+AHA P GG +D DE+W G+ G +
Sbjct: 59 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLY 117
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYI---DPGATKGLHTDDVQGIRALY 219
A HE+GH LG+ HS A+MY DP K L DD++GI+ LY
Sbjct: 118 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFK-LSQDDIKGIQKLY 165
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGT---PAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP P+W ++ +TY + T P ++ V +A W F + +
Sbjct: 1 YSLFPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 57
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I F RG HGDS PFDG G T+AHA P GG +D DE+W G+ G +
Sbjct: 58 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLY 116
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYI---DPGATKGLHTDDVQGIRALY 219
A HE+GH LG+ HS A+MY DP K L DD++GI+ LY
Sbjct: 117 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFK-LSQDDIKGIQKLY 164
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 66 GRPRWPPSNSHLTYAFL---PGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKI 121
G P+W +HLTY + P P +A++ AV +A + W ++ FS+ + A++ I
Sbjct: 1 GIPKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMI 57
Query: 122 SFQRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHE 178
SF HGD PFDG G +AHA P GI +D DEQW +L VA HE
Sbjct: 58 SFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHE 115
Query: 179 IGHLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
IGH LGL HS A+MY + L DD+ GI++LY
Sbjct: 116 IGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 159
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 17 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKGG 75
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+H IGH LGL HS A+M
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMF 133
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 134 PTYKYVDINTFR-LSADDIRGIQSLY 158
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 14/161 (8%)
Query: 68 PRWPPSNSHLTYAFLPGTP----AEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISF 123
P+W +N LTY TP AE A+ AF+ W+ S F++ A++ I+F
Sbjct: 2 PKWERTN--LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ-GEADINIAF 58
Query: 124 QRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIG 180
+ HGD+SPFDG G +AHA P GI +DA+E W + ++L VA HE G
Sbjct: 59 YQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTS--ANYNLFLVAAHEFG 116
Query: 181 HLLGLDHSLVEGAIMYA--YIDPGATKGLHTDDVQGIRALY 219
H LGL HS GA+MY + L DD+ GI+A+Y
Sbjct: 117 HSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 157
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 61 YEFFPGRPRWPPSNSHLTYAFLPGT---PAEAIN-AVGRAFQTWAAISHFKFSQTQDYTN 116
Y FP P+W ++ +TY + T P ++ V +A W F + +
Sbjct: 2 YSLFPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVV-WGT 58
Query: 117 ANLKISFQRGWHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLET 173
A++ I F RG HGDS PFDG G T+AHA P GG +D DE+W G+ G +
Sbjct: 59 ADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLY 117
Query: 174 VALHEIGHLLGLDHSLVEGAIMYAYI---DPGATKGLHTDDVQGIRALY 219
A HE+GH LG+ HS A+MY DP K L DD++GI+ LY
Sbjct: 118 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFK-LSQDDIKGIQKLY 165
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 81 FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDSSPFDGRGG 139
+ P E ++ A+ +AFQ W+ ++ KFS+ A++ + F RG HGD FDG+GG
Sbjct: 16 YTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDFHAFDGKGG 74
Query: 140 TIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIM- 195
+AHA P GI +D DE W G +L A+H IGH LGL HS A+M
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTT--HSGGTNLFLTAVHAIGHSLGLGHSSDPKAVMF 132
Query: 196 --YAYIDPGATKGLHTDDVQGIRALY 219
Y Y+D + L DD++GI++LY
Sbjct: 133 PTYKYVDINTFR-LSADDIRGIQSLY 157
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 68 PRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISF 123
P+W +HLTY + P P +A++ AV +A + W ++ FS+ + A++ ISF
Sbjct: 2 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 58
Query: 124 QRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIG 180
HGD PFDG G +AHA P GI +D DEQW +L VA HEIG
Sbjct: 59 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 116
Query: 181 HLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
H LGL HS A+MY + L DD+ GI++LY
Sbjct: 117 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 158
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 68 PRWPPSNSHLTYA---FLPGTPAEAIN-AVGRAFQTWAAISHFKFSQTQDYTNANLKISF 123
P+W +HLTY + P P +A++ AV +A + W ++ FS+ + A++ ISF
Sbjct: 2 PKW--RKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISF 58
Query: 124 QRGWHGDSSPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVGARPGAFDLETVALHEIG 180
HGD PFDG G +AHA P GI +D DEQW +L VA HEIG
Sbjct: 59 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 116
Query: 181 HLLGLDHSLVEGAIMYAY---IDPGATKGLHTDDVQGIRALY 219
H LGL HS A+MY + L DD+ GI++LY
Sbjct: 117 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLY 158
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 91 NAVGRAFQTWAAISHFKFSQTQ-------DYTNANLKISFQRGWHGDSSPFDGRGGTIAH 143
A+ +AF+ W + + +F + A++ I F G+HGDS+PFDG GG +AH
Sbjct: 31 EAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAH 90
Query: 144 A---APPRGGIFDYDADEQWAV-GARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYI 199
A P GG +D+ E W V D+ VA+HE+GH LGL+HS AIM +
Sbjct: 91 AYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 150
Query: 200 DPGATKG--LHTDDVQGIRALY 219
T+ L DD +GI+ LY
Sbjct: 151 QWMDTENFVLPDDDRRGIQQLY 172
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 91 NAVGRAFQTWAAISHFKFSQTQ-------DYTNANLKISFQRGWHGDSSPFDGRGGTIAH 143
A+ +AF+ W + + +F + A++ I F G+HGDS+PFDG GG +AH
Sbjct: 29 EAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAH 88
Query: 144 A---APPRGGIFDYDADEQWAV-GARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYI 199
A P GG +D+ E W V D+ VA+HE+GH LGL+HS AIM +
Sbjct: 89 AYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148
Query: 200 DPGATKG--LHTDDVQGIRALY 219
T+ L DD +GI+ LY
Sbjct: 149 QWMDTENFVLPDDDRRGIQQLY 170
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 12 STGVLDGNTVAMMTRPRCGVADIVNGTTRMRSGMKSHQHGANHFHTVSHYEFFPGRPRWP 71
TG LD T+ M PRCGV D+ T +K H H ++ + +Y PR
Sbjct: 63 ETGELDSATLKAMRTPRCGVPDLGRFQT-FEGDLKWHHHNITYW--IQNYS--EDLPR-- 115
Query: 72 PSNSHLTYAFLPGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNANLKISFQRGWHGDS 131
A +A RAF W+A++ F++ +A++ I F HGD
Sbjct: 116 ---------------AVIDDAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 159
Query: 132 SPFDGRGGTIAHAAPPRGGI---FDYDADEQWAVG 163
PFDG+ G +AHA PP GI +D DE W++G
Sbjct: 160 YPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLG 194
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 153 DYDADEQWAVGARPGAFDLETVALHEIGHLLGLDHSLVEGAIMYAYIDPGATKGLHTDDV 212
++D+D++W G + L VA HE GH LGLDHS V A+MY LH DDV
Sbjct: 359 NFDSDKKWGFCPDQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 417
Query: 213 QGIRALY 219
GIR LY
Sbjct: 418 NGIRHLY 424
>pdb|1C7K|A Chain A, Crystal Structure Of The Zinc Protease
pdb|1KUH|A Chain A, Zinc Protease From Streptomyces Caespitosus
Length = 132
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 120 KISFQRGWHGDSSPFDG---RGGTIAHAAPPRGGIF-DYDADEQWAVGARPGAFDLETVA 175
+ + G + D S ++G RG RG IF DY ++Q +D V
Sbjct: 31 NVQLRAGGNADFSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQ---------YDSTRVT 81
Query: 176 LHEIGHLLGL-DH 187
HE GH+LGL DH
Sbjct: 82 AHETGHVLGLPDH 94
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 175 ALHEIGHLLGLDHS 188
A+HEIGH+LGL H
Sbjct: 115 AVHEIGHVLGLKHC 128
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 175 ALHEIGHLLGLDHS 188
A+HEIGH+LGL H
Sbjct: 115 AVHEIGHVLGLKHC 128
>pdb|1U8X|X Chain X, Crystal Structure Of Glva From Bacillus Subtilis, A
Metal-requiring, Nad-dependent
6-phospho-alpha-glucosidase
Length = 472
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 42 RSGMKSHQHGANHFHTVSHYEFFPGRPRWPPSNSHLT-YAFLPGTPAEAINA 92
R K +G NHF + + G P H++ Y ++P T AEA+ A
Sbjct: 213 RKEXKVRYYGLNHFGWWTSIQDQEGNDLXPKLKEHVSQYGYIPKTEAEAVEA 264
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 175 ALHEIGHLLGLDHS 188
A+HEIGH+LGL H
Sbjct: 118 AVHEIGHVLGLKHC 131
>pdb|4HX3|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
pdb|4HX3|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
pdb|4HX3|E Chain E, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
pdb|4HX3|G Chain G, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
pdb|4HX3|I Chain I, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
pdb|4HX3|K Chain K, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With S. Caespitosus Snapalysin
Length = 134
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 120 KISFQRGWHGDSSPFDG---RGGTIAHAAPPRGGIF-DYDADEQWAVGARPGAFDLETVA 175
+ + G + D S ++G RG RG IF DY ++Q +D V
Sbjct: 33 NVQLRAGGNADFSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQ---------YDSTRVT 83
Query: 176 LHEIGHLLGL-DH 187
HE GH+LGL DH
Sbjct: 84 AHETGHVLGLPDH 96
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 76 HLTYAFLPGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNA---NLKISFQRG--WHGD 130
+LTY FL P + R T++ S + Q + + K++F G GD
Sbjct: 57 NLTYTFLTAPP---VGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGD 113
Query: 131 S-----SPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVAL-HEIGH 181
+ F G A A P R G Y ++ + V PG + L HEIGH
Sbjct: 114 DGHMTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGH 173
Query: 182 LLGLDH 187
LGL H
Sbjct: 174 TLGLSH 179
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 76 HLTYAFLPGTPAEAINAVGRAFQTWAAISHFKFSQTQDYTNA---NLKISFQRG------ 126
+LTY FL P + R T++ S + Q + + K++F G
Sbjct: 57 NLTYTFLTAPP---VGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGD 113
Query: 127 -WHGDSSPFDGRGGTIAHAAPP---RGGIFDYDADEQWAVGARPGAFDLETVAL-HEIGH 181
H + F G A A P R G Y ++ + V PG + L HEIGH
Sbjct: 114 DGHQTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGH 173
Query: 182 LLGLDH 187
LGL H
Sbjct: 174 TLGLSH 179
>pdb|3LMC|A Chain A, Crystal Structure Of Zinc-Dependent Peptidase From
Methanocorpusculum Labreanum (Strain Z), Northeast
Structural Genomics Consortium Target Mur16
Length = 210
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 177 HEIGHLLGLDHSLVEGAIMYA 197
HEIGHL GL H G I Y
Sbjct: 149 HEIGHLFGLGHCDNPGCIXYC 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,834,897
Number of Sequences: 62578
Number of extensions: 348844
Number of successful extensions: 975
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 110
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)