BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039412
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 262 KRIKYTPLLKNPRRSSL----------YYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTI 311
K + YTPLL NP +S Y++ + +I++ ++V + L + GT
Sbjct: 210 KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTK 269
Query: 312 IDSGTVFTRLVAPAYTAVRDVF-RRRVGSNLT-VTSLGGFDTCYSVPIV--------APT 361
I + +T L Y AV + F + N+T V S+ F C+S + P+
Sbjct: 270 ISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPS 329
Query: 362 ITLMFSGMNV--TLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYD 419
I L+ +V T+ N +++ ++ CL + N+ + + VI Q +++ + +D
Sbjct: 330 IDLVLQSESVVWTITGSNSMVY-INDNVVCLGVVDGGSNLRTSI-VIGGHQLEDNLVQFD 387
Query: 420 VPNSRLGVAREL 431
+ SR+G + L
Sbjct: 388 LATSRVGFSGTL 399
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 262 KRIKYTPLLKNPRRSSL----------YYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTI 311
K + YTPLL NP +S Y++ + +I++ ++V + L + GT
Sbjct: 210 KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTK 269
Query: 312 IDSGTVFTRLVAPAYTAVRDVF-RRRVGSNLT-VTSLGGFDTCYSVPIV--------APT 361
I + +T L Y AV + F + N+T V S+ F C+S + P+
Sbjct: 270 ISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPS 329
Query: 362 ITLMFSGMNV--TLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYD 419
I L+ +V T+ N +++ ++ CL + N+ + + VI Q +++ + +D
Sbjct: 330 IDLVLQSESVVWTITGSNSMVY-INDNVVCLGVVDGGSNLRTSI-VIGGHQLEDNLVQFD 387
Query: 420 VPNSRLGVAREL 431
+ SR+G + L
Sbjct: 388 LATSRVGFSGTL 399
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 44/336 (13%)
Query: 103 IGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSS-TVFNSAQSTTFKNLGCQAAQCKQVPN 159
IGTP ++ + DT + WV + C CS+ F QS+T+ G K V
Sbjct: 20 IGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETG------KTV-- 71
Query: 160 PTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATG--NSVPPQXXXX 217
+LTYG+ + L QDT+S+ P G Q G + P
Sbjct: 72 ----------DLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGIL 121
Query: 218 XXXXXXXXXAQTQNLYQSTFSYCLPSFKALSF--SGSLRLGP---IGQPKRIKYTPLLKN 272
A ++ + S L SF SG G +G YT
Sbjct: 122 GLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYT----- 176
Query: 273 PRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDV 332
S++++ + A + + +D Q G I+D+GT +++VAP +A+ ++
Sbjct: 177 ---GSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAIVDTGT--SKIVAPV-SALANI 230
Query: 333 FRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAM 392
+ +G++ + G C SV + P IT +G+ LP + A + L
Sbjct: 231 M-KDIGASENQGEMMG--NCASVQSL-PDITFTINGVKQPLPPSAYIEGDQAFCTSGLGS 286
Query: 393 AAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVA 428
+ P N S L + ++ +N+ +YD N+++G A
Sbjct: 287 SGVPSNT-SELWIFGDVFLRNYYTIYDRTNNKVGFA 321
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 78/364 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCS-STVFNSAQSTTFKNLGCQAAQ 153
Y +GTP Q + +DT + WVP C + C + ++ S+++K G +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE--- 71
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPG-------------YTFG 200
F + YG+ ++ +SQDT+S+ +P + FG
Sbjct: 72 ---------------FAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFG 116
Query: 201 CIQKATG---------NSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCL-PSFKALSFS 250
G VPP Q L + F++ L + K
Sbjct: 117 KFDGILGLGYDTISVDKVVPP----------FYNAIQQDLLDEKRFAFYLGDTSKDTENG 166
Query: 251 GSLRLGPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG 307
G G I + K I + P+ RR + + V I +G ++
Sbjct: 167 GEATFGGIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAELES---------- 212
Query: 308 AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFS 367
G ID+GT L + + ++ +G+ T D C + + P + F+
Sbjct: 213 HGAAIDTGTSLITLP----SGLAEMINAEIGAKKGWTGQYTLD-CNTRDNL-PDLIFNFN 266
Query: 368 GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGV 427
G N T+ + + + I+ + P+ V L ++ + + + +YD+ N+ +G+
Sbjct: 267 GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGP-LAIVGDAFLRKYYSIYDIGNNAVGL 325
Query: 428 AREL 431
A+ +
Sbjct: 326 AKAI 329
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 78/364 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCS-STVFNSAQSTTFKNLGCQAAQ 153
Y +GTP Q + +DT + WVP C + C + ++ S+++K G +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE--- 71
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPG-------------YTFG 200
F + YG+ ++ +SQDT+S+ +P + FG
Sbjct: 72 ---------------FAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFG 116
Query: 201 CIQKATG---------NSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCL-PSFKALSFS 250
G VPP Q L + F++ L + K
Sbjct: 117 KFDGILGLGYDTISVDKVVPP----------FYNAIQQDLLDEKRFAFYLGDTSKDTENG 166
Query: 251 GSLRLGPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG 307
G G I + K I + P+ RR + + V I +G ++
Sbjct: 167 GEATFGGIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAELES---------- 212
Query: 308 AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFS 367
G ID+GT L + + ++ +G+ T D C + + P + F+
Sbjct: 213 HGAAIDTGTSLITLP----SGLAEMINAEIGAKKGSTGQYTLD-CNTRDNL-PDLIFNFN 266
Query: 368 GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGV 427
G N T+ + + + I+ + P+ V L ++ + + + +YD+ N+ +G+
Sbjct: 267 GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGP-LAIVGDAFLRKYYSIYDLGNNAVGL 325
Query: 428 AREL 431
A+ +
Sbjct: 326 AKAI 329
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/364 (19%), Positives = 133/364 (36%), Gaps = 78/364 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCS-STVFNSAQSTTFKNLGCQAAQ 153
Y +GTP Q + +DT + WVP C + C + ++ S+++K G +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTE--- 71
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPG-------------YTFG 200
F + YG+ ++ +SQDT+S+ +P + FG
Sbjct: 72 ---------------FAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFG 116
Query: 201 CIQKATG---------NSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCL-PSFKALSFS 250
G VPP Q L + F++ L + K
Sbjct: 117 KFDGILGLGYDTISVDKVVPP----------FYNAIQQDLLDEKRFAFYLGDTSKDTENG 166
Query: 251 GSLRLGPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG 307
G G I + K I + P+ RR + + V I +G ++
Sbjct: 167 GEATFGGIDESKFKGDITWLPV----RRKAYWEVKFEGIGLGDEYAELES---------- 212
Query: 308 AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFS 367
G ID+GT L + + ++ +G+ T D C + + P + F+
Sbjct: 213 HGAAIDTGTSLITLP----SGLAEMINAEIGAKKGWTGQYTLD-CNTRDNL-PDLIFNFN 266
Query: 368 GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGV 427
G N T+ + + + I+ + P+ V L ++ + + + +YD+ N+ +G+
Sbjct: 267 GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGP-LAIVGDAFLRKYYSIYDLGNNAVGL 325
Query: 428 AREL 431
A+ +
Sbjct: 326 AKAI 329
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTP Q L+ DT + WVP C C+S + FN ++S+T+ G
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNG----- 68
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATG 207
F+L YGS ++ DT+++ + VP FG + G
Sbjct: 69 -------------QTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPG 109
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV---GC-SSTVFNSAQSTTFK 145
Y + IGTP Q L+ DT + WVP GC GC S F+ + S+TFK
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFK 72
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSS----TVFNSAQSTTFKNLG 148
+ +Y IGTP Q + DT + WVP + C+ + +++ S+ S+T+K G
Sbjct: 11 RDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENG 70
Query: 149 CQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTF 199
A + YG+ +I SQD++++ +V F
Sbjct: 71 TFGA------------------IIYGTGSITGFFSQDSVTIGDLVVKEQDF 103
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 100 RAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSST-VFNSAQSTTFKNLGCQAAQCKQ 156
+IGT Q + DT + WVP C +GCS+ +++++ S +++ G +
Sbjct: 19 EGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSYEKDGTKVE---- 74
Query: 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPP 212
++YGS T+ S+D ISL +P Y F I+ + + P
Sbjct: 75 --------------ISYGSGTVRGYFSKDVISLGDLSLP-YKF--IEVTDADDLEP 113
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVP---CTGCVGCSSTVFNSAQSTTFKNLGCQAAQ 153
Y + IGTP Q + DT + WVP C V + F+ +S+TF+NLG
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLG----- 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN 208
++ YG+ ++ L DT++++ + P T G + G
Sbjct: 68 -------------KPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGE 109
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 23/92 (25%)
Query: 103 IGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQAAQCKQV 157
IGTP Q + DT + WVP C + C +NS +S+T+ V
Sbjct: 21 IGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTY------------V 68
Query: 158 PNPTCGGGACAFNLTYGSSTIAANLSQDTISL 189
N T +F++ YGS +++ LSQDT+S+
Sbjct: 69 KNGT------SFDIHYGSGSLSGYLSQDTVSV 94
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 100 RAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSST-VFNSAQSTTFKNLGCQAAQCKQ 156
++G Q ++ DT + WVP C +GCS+ +++S++S +++ G +
Sbjct: 19 EGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKSKSYEKDGTKVE---- 74
Query: 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+TYGS T+ S+D ++L
Sbjct: 75 --------------ITYGSGTVRGFFSKDLVTLG 94
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 121
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 122 -----------------LTLRYSTGTVSGFLSQDIITVG 143
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC---VGC-SSTVFNSAQSTTFK 145
Y + IGTP Q + DT + WVP GC GC F+ + S+TFK
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFK 72
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 71
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 72 -----------------LTLRYSTGTVSGFLSQDIITVG 93
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 75
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 76 -----------------LTLRYSTGTVSGFLSQDIITVG 97
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 74
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 75 -----------------LTLRYSTGTVSGFLSQDIITVG 96
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 78
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 79 -----------------LTLRYSTGTVSGFLSQDIITVG 100
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 78
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 79 -----------------LTLRYSTGTVSGFLSQDIITVG 100
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 78
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 79 -----------------LTLRYSTGTVSGFLSQDIITVG 100
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 100 RAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCS-STVFNSAQSTTFKNLGCQAAQCKQ 156
++G Q ++ DT + WVP C GCS +++S++S +++ G +
Sbjct: 67 EGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKV----- 121
Query: 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
++TYGS T+ S+D ++L
Sbjct: 122 -------------DITYGSGTVKGFFSKDLVTLG 142
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGC-SSTVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP + C C +F+++ S+++K+ G +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTE- 78
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
L Y + T++ LSQD I++
Sbjct: 79 -----------------LTLRYSTGTVSGFLSQDIITVG 100
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 100 RAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCS-STVFNSAQSTTFKNLGCQAAQCKQ 156
++G Q ++ DT + WVP C GCS +++S++S +++ G +
Sbjct: 21 EGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKV----- 75
Query: 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
++TYGS T+ S+D ++L
Sbjct: 76 -------------DITYGSGTVKGFFSKDLVTLG 96
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC---VGCS-STVFNSAQSTTFKNLGCQAA 152
Y +GTP Q + DT + WVP C + C + + + S+T+K G AA
Sbjct: 54 YFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAA 113
Query: 153 QCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTF 199
+ YG+ +IA S+D++++ +V F
Sbjct: 114 ------------------IQYGTGSIAGYFSEDSVTVGDLVVKDQEF 142
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 54/238 (22%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGC-SSTVFNSAQSTTFKNLGCQAAQ 153
Y A+IG Q DT + WVP C +GC + +++S +S T++ G +
Sbjct: 23 YYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEKDGTKVE- 81
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA-----------TD---IVPGYTF 199
+ Y S T++ S+D +++A TD P YT
Sbjct: 82 -----------------MNYVSGTVSGFFSKDIVTIANLSFPYKFIEVTDTNGFEPAYTL 124
Query: 200 GCIQKATGNSVPPQXXXXXXXXXXXXXAQTQN-LYQSTFSYCLPSFKALSFSGSLRLGPI 258
G G + + + QN + Q+ F++ LP F G L +G
Sbjct: 125 GQFDGIVG--LGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLP-FDD-KHKGYLTIG-- 178
Query: 259 GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGT 316
G R L LY+ L + G V+ A I+DSGT
Sbjct: 179 GIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVE------------KATAIVDSGT 224
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 69 LQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVP---C 125
+QF S ++ + + P+ + + Y IG+P Q + DT + WVP C
Sbjct: 1 IQFTESCSMDQSAKEPLINYLDME----YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC 56
Query: 126 TGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQD 185
T + + F +QS+T+ G +F++ YG+ +++ + D
Sbjct: 57 TSPACKTHSRFQPSQSSTYSQPG------------------QSFSIQYGTGSLSGIIGAD 98
Query: 186 TISLATDIVPGYTFG 200
+S+ V G FG
Sbjct: 99 QVSVEGLTVVGQQFG 113
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 111
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 112 SQEL------------SITYGTGSMTGILGYDTVQVG 136
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 111
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 112 XQEL------------SITYGTGSMTGILGYDTVQVG 136
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 68 SQEL------------SITYGTGSMTGILGYDTVQVG 92
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 68 SQEL------------SITYGTGSMTGILGYDTVQVG 92
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLG 148
Y + +GTP Q + DT + WVP C C + F+ +S+TF+NLG
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLG 70
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 68 SQEL------------SITYGTGSMTGILGYDTVQVG 92
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLG 148
Y + +GTP Q + DT + WVP C C + F+ +S+TF+NLG
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLG 70
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 25/106 (23%)
Query: 91 ITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWV-----PCTGCVGC-SSTVFNSAQSTTF 144
I + P+Y + +G+ Q + +DT + WV C V C SS F + S+++
Sbjct: 8 INEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSY 67
Query: 145 KNLGCQAAQCKQVPNPTCGGGACAFNLTYGS-STIAANLSQDTISL 189
KNLG AF + YG ST +DT+++
Sbjct: 68 KNLG------------------AAFTIRYGDGSTSQGTWGKDTVTI 95
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 68 XQEL------------SITYGTGSMTGILGYDTVQVG 92
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + CS FN S+TF+ A
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+++ ++TYG+ ++ L DT+ +
Sbjct: 68 XQEL------------SITYGTGSMTGILGYDTVQVG 92
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 37/219 (16%)
Query: 237 FSYCLPSFK--ALSFSGSLRLGPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRR 291
F CLP+ F G GP+ P+ + YTPL+ S +Y++ +I VG
Sbjct: 164 FLLCLPTGGPGVAIFGG----GPVPWPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDT 218
Query: 292 VVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSN--------LTV 343
V +P GAL TG G ++ + + L Y + D F + + + V
Sbjct: 219 RVPVPEGAL----ATG-GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAV 273
Query: 344 TSLGGFDTCYSVPIVA--------PTITL-MFSGMNVTLPQDNLLIHSTAGSITCLAM-- 392
++ F CY + P + L + G + T+ N ++ G+ C+A
Sbjct: 274 EAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGT-ACVAFVE 332
Query: 393 --AAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429
A + + ++ Q ++ + +D+ RLG +R
Sbjct: 333 MKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSS--TVFNSAQSTTFKNLGCQAAQC 154
Y + IGTP + + DT + W+ T C C S T ++ QS+T++ G
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTKYDPNQSSTYQADG------ 70
Query: 155 KQVPNPTCGGGACAFNLTYGSSTIAAN-LSQDTISLATDIVPGYT 198
++++YG + A+ L++D ++L ++ G T
Sbjct: 71 ------------RTWSISYGDGSSASGILAKDNVNLGGLLIKGQT 103
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC----VGCS-STVFNSAQSTTFKNLGCQA 151
Y IGTP QT + DT + WVP T C + C +++ S+ S+++ G
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDD- 75
Query: 152 AQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
F + YGS + LSQD++++
Sbjct: 76 -----------------FTIHYGSGRVKGFLSQDSVTVG 97
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSS--TVFNSAQSTTFKNLGCQAAQC 154
Y + IGTP + + DT + W+ T C C S T ++ QS+T++ G
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADG------ 70
Query: 155 KQVPNPTCGGGACAFNLTYGSSTIAAN-LSQDTISLATDIVPGYT 198
++++YG + A+ L++D ++L ++ G T
Sbjct: 71 ------------RTWSISYGDGSSASGILAKDNVNLGGLLIKGQT 103
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 56/243 (23%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 12 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 71
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS 209
+ + Y S T++ S+D +++ +P Y F I+ N
Sbjct: 72 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF--IEVIDTNG 110
Query: 210 VPP---------------QXXXXXXXXXXXXXAQTQN-LYQSTFSYCLPSFKALSFSGSL 253
P + + QN + + F++ LP +G L
Sbjct: 111 FEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFL 168
Query: 254 RLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIID 313
+G G +R PL LY+ L VG +++ A I+D
Sbjct: 169 TIG--GIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE------------KANCIVD 214
Query: 314 SGT 316
SGT
Sbjct: 215 SGT 217
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 56/243 (23%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 63 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 122
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS 209
+ + Y S T++ S+D +++ +P Y F I+ N
Sbjct: 123 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF--IEVIDTNG 161
Query: 210 VPP---------------QXXXXXXXXXXXXXAQTQN-LYQSTFSYCLPSFKALSFSGSL 253
P + + QN + + F++ LP +G L
Sbjct: 162 FEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFL 219
Query: 254 RLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIID 313
+G G +R PL LY+ L VG +++ A I+D
Sbjct: 220 TIG--GIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE------------KANCIVD 265
Query: 314 SGT 316
SGT
Sbjct: 266 SGT 268
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 56/243 (23%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 136 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 195
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS 209
+ + Y S T++ S+D +++ +P Y F I+ N
Sbjct: 196 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF--IEVIDTNG 234
Query: 210 VPP---------------QXXXXXXXXXXXXXAQTQN-LYQSTFSYCLPSFKALSFSGSL 253
P + + QN + + F++ LP +G L
Sbjct: 235 FEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFL 292
Query: 254 RLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIID 313
+G G +R PL LY+ L VG +++ A I+D
Sbjct: 293 TIG--GIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE------------KANCIVD 338
Query: 314 SGT 316
SGT
Sbjct: 339 SGT 341
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 56/243 (23%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 14 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 73
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS 209
+ + Y S T++ S+D +++ +P Y F I+ N
Sbjct: 74 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF--IEVIDTNG 112
Query: 210 VPP---------------QXXXXXXXXXXXXXAQTQN-LYQSTFSYCLPSFKALSFSGSL 253
P + + QN + + F++ LP +G L
Sbjct: 113 FEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD--KHTGFL 170
Query: 254 RLGPIGQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIID 313
+G G +R PL LY+ L VG +++ A I+D
Sbjct: 171 TIG--GIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE------------KANCIVD 216
Query: 314 SGT 316
SGT
Sbjct: 217 SGT 219
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + C++ FN S+T+++
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQST------ 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+ ++TYG+ ++ L DT+ +
Sbjct: 68 ------------SETVSITYGTGSMTGILGYDTVQVG 92
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGC--VGCSS-TVFNSAQSTTFKNLGCQAAQ 153
Y IGTPAQ + DT + WVP C + C++ FN S+T+++
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQST------ 67
Query: 154 CKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLA 190
+ ++TYG+ ++ L DT+ +
Sbjct: 68 ------------SETVSITYGTGSMTGILGYDTVQVG 92
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWV--PCTGCVGCSSTVFNSAQSTTFKNL 147
YI +IGTPAQTL + DT + WV T T++ ++STT K L
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLL 69
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWV--PCTGCVGCSSTVFNSAQSTTFKNL 147
YI +IGTPAQTL + DT + WV T T++ ++STT K L
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLL 69
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 14 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 73
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTF 199
+ + Y S T++ S+D +++ +P Y F
Sbjct: 74 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF 104
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GC-SSTVFNSAQSTTFKNLGC 149
Q+ + A++G Q +DT + WVP C GC + +++S++S T++ G
Sbjct: 12 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGT 71
Query: 150 QAAQCKQVPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTF 199
+ + Y S T++ S+D +++ +P Y F
Sbjct: 72 KVE------------------MNYVSGTVSGFFSKDLVTVGNLSLP-YKF 102
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNL 147
YI +IGTPAQTL + DT + WV T T++ ++STT K L
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNL 147
YI +IGTPAQTL + DT + WV T T++ ++STT K L
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 31/198 (15%)
Query: 256 GPIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTII 312
GP+ P+ + YTPL+ S +Y++ +I VG V +P GAL TG G ++
Sbjct: 181 GPVPWPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGAL----ATG-GVML 234
Query: 313 DSGTVFTRLVAPAYTAVRDVFRRRVGSN--------LTVTSLGGFDTCYSVPIVA----- 359
+ + L Y + D F + + + V ++ F CY +
Sbjct: 235 STRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGG 294
Query: 360 ---PTITL-MFSGMNVTLPQDNLLIHSTAGSITCLAM----AAAPDNVNSVLNVIANMQQ 411
P + L + G + T+ N ++ G+ C+A A + + ++ Q
Sbjct: 295 YAVPNVQLGLDGGSDWTMTGKNSMVDVKQGT-ACVAFVEMKGVAAGDGRAPAVILGGAQM 353
Query: 412 QNHRILYDVPNSRLGVAR 429
++ + +D+ RLG +R
Sbjct: 354 EDFVLDFDMEKKRLGFSR 371
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 64/257 (24%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQ 156
Y+V +G+PA T + +DT + W+ A
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWL---------------------------GADKSY 46
Query: 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATG--------- 207
V T + ++TYGS + + DT++L + +P + G + +G
Sbjct: 47 VKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGVDGILG 106
Query: 208 --------NSVPPQXXXXXXXXXXXXXAQT---QNLYQSTFSYCLPSFKALSFSGSLRLG 256
++ P +Q NL +F P+ S +G L G
Sbjct: 107 VGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFE---PTTSESSTNGELTFG 163
Query: 257 PIGQPK---RIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIID 313
K I YTP+ S+ + +N +IR G + A I+D
Sbjct: 164 ATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILSSTA----------GIVD 212
Query: 314 SGTVFTRLVAPAYTAVR 330
+GT T + + A+ +
Sbjct: 213 TGTTLTLIASDAFAKYK 229
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 97 YIVRAKIGTPAQTLLMAMDTSNDAAWV 123
YI IGTPAQ L + DT + WV
Sbjct: 17 YITSVSIGTPAQVLPLDFDTGSSDLWV 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,726,933
Number of Sequences: 62578
Number of extensions: 386739
Number of successful extensions: 1088
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 64
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)