Query 039412
Match_columns 433
No_of_seqs 324 out of 1802
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3.7E-72 7.9E-77 559.5 45.4 394 26-433 19-429 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.2E-59 2.5E-64 471.5 36.6 308 81-433 109-449 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 5.4E-58 1.2E-62 455.2 37.5 333 90-433 40-397 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-58 5.6E-63 447.2 32.2 300 93-429 3-325 (325)
5 cd06098 phytepsin Phytepsin, a 100.0 3E-57 6.4E-62 437.8 32.8 290 92-429 6-317 (317)
6 cd05478 pepsin_A Pepsin A, asp 100.0 2.3E-57 5E-62 438.9 31.5 291 93-429 7-317 (317)
7 cd05486 Cathespin_E Cathepsin 100.0 2.1E-57 4.6E-62 438.9 29.8 294 97-429 1-316 (316)
8 cd05472 cnd41_like Chloroplast 100.0 2.3E-56 5.1E-61 428.6 33.8 291 96-432 1-299 (299)
9 cd05487 renin_like Renin stimu 100.0 1.4E-56 3.1E-61 434.9 31.5 299 92-430 4-326 (326)
10 cd05477 gastricsin Gastricsins 100.0 3.1E-56 6.7E-61 431.4 32.5 296 94-430 1-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 6.2E-56 1.3E-60 429.3 32.4 293 93-429 7-320 (320)
12 cd05485 Cathepsin_D_like Cathe 100.0 1.1E-55 2.4E-60 428.8 31.3 299 92-429 7-329 (329)
13 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.5E-55 3.2E-60 427.6 30.7 289 95-433 2-326 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 5.4E-55 1.2E-59 434.7 32.1 301 80-431 127-450 (453)
15 cd05489 xylanase_inhibitor_I_l 100.0 7.5E-54 1.6E-58 418.8 33.2 313 103-430 2-361 (362)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.1E-53 2.5E-58 424.3 32.3 301 80-431 126-449 (450)
17 cd05473 beta_secretase_like Be 100.0 3.7E-53 8.1E-58 416.9 31.4 306 95-433 2-348 (364)
18 cd05476 pepsin_A_like_plant Ch 100.0 1.8E-51 3.8E-56 387.8 29.8 258 96-432 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 2.4E-51 5.2E-56 388.3 30.3 255 95-432 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 4.5E-50 9.7E-55 381.0 27.9 257 97-429 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 6.8E-50 1.5E-54 387.2 21.5 294 96-430 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.7E-48 5.9E-53 372.3 26.9 270 96-430 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 4.9E-45 1.1E-49 347.4 28.9 264 97-429 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.5E-30 3.4E-35 226.3 13.7 153 97-257 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.9E-25 4.1E-30 194.2 14.4 149 278-429 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1E-23 2.3E-28 171.2 12.2 102 99-218 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 7.8E-06 1.7E-10 63.9 7.2 92 96-220 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0015 3.2E-08 53.6 8.2 94 94-220 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.011 2.5E-07 45.1 8.0 88 99-219 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 96.1 0.035 7.7E-07 45.6 8.3 91 94-220 14-107 (124)
31 cd05479 RP_DDI RP_DDI; retrope 96.0 0.025 5.5E-07 46.5 6.8 25 403-427 100-124 (124)
32 PF11925 DUF3443: Protein of u 95.1 0.54 1.2E-05 45.3 13.1 104 97-221 24-149 (370)
33 cd05484 retropepsin_like_LTR_2 95.1 0.1 2.2E-06 40.3 6.9 28 97-126 1-28 (91)
34 PF08284 RVP_2: Retroviral asp 94.7 0.08 1.7E-06 44.2 5.8 100 308-430 33-132 (135)
35 COG3577 Predicted aspartyl pro 93.5 0.55 1.2E-05 41.4 8.6 88 81-202 94-183 (215)
36 cd06095 RP_RTVL_H_like Retrope 92.1 0.91 2E-05 34.5 7.4 26 100-127 2-27 (86)
37 PF13975 gag-asp_proteas: gag- 90.9 0.43 9.4E-06 34.9 4.3 33 93-127 5-37 (72)
38 PF12384 Peptidase_A2B: Ty3 tr 89.8 0.76 1.6E-05 39.0 5.3 23 307-329 45-67 (177)
39 TIGR03698 clan_AA_DTGF clan AA 88.5 2.6 5.6E-05 33.5 7.4 23 403-425 85-107 (107)
40 TIGR02281 clan_AA_DTGA clan AA 86.8 1.3 2.9E-05 36.1 4.9 36 276-329 9-44 (121)
41 PF00077 RVP: Retroviral aspar 86.4 0.99 2.1E-05 35.2 3.9 28 98-127 7-34 (100)
42 PF13650 Asp_protease_2: Aspar 84.8 1.4 3.1E-05 33.2 4.0 21 309-329 11-31 (90)
43 cd05484 retropepsin_like_LTR_2 81.4 2.7 5.8E-05 32.2 4.3 30 285-329 4-33 (91)
44 PF13975 gag-asp_proteas: gag- 81.3 2.6 5.7E-05 30.7 4.0 29 286-329 13-41 (72)
45 cd05482 HIV_retropepsin_like R 77.9 3 6.4E-05 31.8 3.4 25 100-126 2-26 (87)
46 cd05483 retropepsin_like_bacte 77.1 4.3 9.4E-05 30.8 4.3 21 309-329 15-35 (96)
47 PF09668 Asp_protease: Asparty 77.0 5.9 0.00013 32.4 5.1 89 94-218 22-113 (124)
48 cd06095 RP_RTVL_H_like Retrope 75.0 4.3 9.2E-05 30.7 3.7 21 309-329 11-31 (86)
49 PF09668 Asp_protease: Asparty 72.3 8.9 0.00019 31.4 5.1 30 285-329 28-57 (124)
50 PF00077 RVP: Retroviral aspar 64.7 6.2 0.00014 30.5 2.7 27 285-326 9-35 (100)
51 PF02160 Peptidase_A3: Caulifl 64.1 12 0.00026 33.3 4.6 25 403-428 92-116 (201)
52 PF12384 Peptidase_A2B: Ty3 tr 61.5 11 0.00023 32.3 3.6 29 98-126 34-62 (177)
53 cd06094 RP_Saci_like RP_Saci_l 59.8 31 0.00068 26.3 5.5 24 305-328 7-30 (89)
54 cd05481 retropepsin_like_LTR_1 57.2 13 0.00029 28.6 3.3 22 308-329 11-32 (93)
55 COG3577 Predicted aspartyl pro 57.0 25 0.00053 31.3 5.2 35 276-328 103-137 (215)
56 COG5550 Predicted aspartyl pro 47.0 15 0.00032 29.9 2.0 89 309-425 28-117 (125)
57 KOG0012 DNA damage inducible p 41.1 98 0.0021 30.1 6.8 106 284-430 238-346 (380)
58 TIGR03698 clan_AA_DTGF clan AA 37.7 42 0.00092 26.5 3.4 26 99-124 2-32 (107)
59 PF07172 GRP: Glycine rich pro 37.6 21 0.00045 27.7 1.5 13 1-13 1-13 (95)
60 cd05481 retropepsin_like_LTR_1 36.2 28 0.00061 26.7 2.1 23 101-125 3-26 (93)
61 cd05470 pepsin_retropepsin_lik 34.2 25 0.00053 27.5 1.6 19 308-326 12-30 (109)
62 PF08284 RVP_2: Retroviral asp 25.3 99 0.0021 25.6 3.7 30 95-126 20-49 (135)
63 cd06098 phytepsin Phytepsin, a 24.7 90 0.0019 29.9 3.9 32 95-126 188-227 (317)
64 cd05475 nucellin_like Nucellin 23.8 87 0.0019 29.2 3.6 33 95-127 157-195 (273)
65 cd00303 retropepsin_like Retro 23.5 76 0.0016 22.2 2.6 22 100-123 2-23 (92)
66 cd06097 Aspergillopepsin_like 22.6 81 0.0018 29.5 3.1 18 308-325 14-31 (278)
67 cd05480 NRIP_C NRIP_C; putativ 21.7 4E+02 0.0087 20.9 8.8 90 309-422 11-103 (103)
68 PF08194 DIM: DIM protein; In 20.3 1.2E+02 0.0025 18.9 2.3 6 1-6 1-6 (36)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.7e-72 Score=559.45 Aligned_cols=394 Identities=26% Similarity=0.509 Sum_probs=325.8
Q ss_pred CCCCCceEEEEecccCCCCCCCCCCCCChHHHHHHHHHHhHHHHHhhhhhhcccceeeecccCccccCCccEEEEEEeCC
Q 039412 26 DTQDHSSTLQVFHVFSPCSPFKPSKPLSWEESVLEMLAKDQARLQFLSSLAVARKSVVPIASGRQITQSPTYIVRAKIGT 105 (433)
Q Consensus 26 ~~~~~~~~l~l~hr~s~~s~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~p~~~~~~~~~~~~Y~~~i~iGt 105 (433)
+++.++++++|+||++||+|+.++.. ++.++++++++|+++|.+++.++.. ...|+..+ ...++++|+++|.|||
T Consensus 19 ~~~~~~~~~~l~h~~~~~sp~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~-~~~~~~~Y~v~i~iGT 93 (431)
T PLN03146 19 EAPKGGFTVDLIHRDSPKSPFYNPSE-TPSQRLRNAFRRSISRVNHFRPTDA---SPNDPQSD-LISNGGEYLMNISIGT 93 (431)
T ss_pred cccCCceEEEEEeCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHhhccc---cCCccccC-cccCCccEEEEEEcCC
Confidence 34667899999999999999876654 6789999999999999999865421 22344443 3345789999999999
Q ss_pred CCceEEEEEecCCCceeeeCCCCCCCCC--CC-CCCCCCCccccccCCCcccCCCCCC-CCC-CCCceeEEecCCCc-eE
Q 039412 106 PAQTLLMAMDTSNDAAWVPCTGCVGCSS--TV-FNSAQSTTFKNLGCQAAQCKQVPNP-TCG-GGACAFNLTYGSST-IA 179 (433)
Q Consensus 106 P~q~~~v~vDTGSs~~wv~~~~C~~C~~--~~-y~~~~Sst~~~~~c~~~~C~~~~~~-~C~-~~~~~~~~~Y~~g~-~~ 179 (433)
|||++.|++||||+++||+|.+|..|.. ++ |||++|+||+.++|+++.|...... .|. ++.|.|.+.|++|+ +.
T Consensus 94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK 173 (431)
T ss_pred CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence 9999999999999999999999999953 37 9999999999999999999877654 476 45699999999976 57
Q ss_pred EeEEEEEEEecC-----cccCceEEEeeeccCCCCC-CCCeEeecCCCCCchhhhhccccCCceEEecCCCCC-CCCcce
Q 039412 180 ANLSQDTISLAT-----DIVPGYTFGCIQKATGNSV-PPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKA-LSFSGS 252 (433)
Q Consensus 180 G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~-~~~GilGLg~~~~s~~~q~~~i~~~~Fs~~l~~~~~-~~~~G~ 252 (433)
|.+++|+|+|++ ..++++.|||++...+.+. ..+||||||++..|+++|++....++|||||.+..+ ....|.
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~ 253 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSK 253 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcce
Confidence 999999999987 3588999999998876553 589999999999999999876555699999976422 234799
Q ss_pred EEecCCC-CC-CCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHH
Q 039412 253 LRLGPIG-QP-KRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVR 330 (433)
Q Consensus 253 l~fGg~d-~~-~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~ 330 (433)
|+||+.. +. +.+.|+|++.+.. +.+|.|+|++|+||++.+.++...+. ..+.+.+||||||++++||+++|++|+
T Consensus 254 l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~ 330 (431)
T PLN03146 254 INFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELE 330 (431)
T ss_pred EEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHH
Confidence 9999965 33 4589999986422 57999999999999999988766553 234568999999999999999999999
Q ss_pred HHHHHHhcCCccccCCCCccCCCCCC--CCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEech
Q 039412 331 DVFRRRVGSNLTVTSLGGFDTCYSVP--IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIAN 408 (433)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~~~~C~~~~--~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~ 408 (433)
++|.++++..........+.+|+... ..+|+|+|+|+|+++.|++++|+++... +..|+++.... +.||||+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~-~~~Cl~~~~~~-----~~~IlG~ 404 (431)
T PLN03146 331 SAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSE-DLVCFAMIPTS-----SIAIFGN 404 (431)
T ss_pred HHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCC-CcEEEEEecCC-----CceEECe
Confidence 99999987543233333468999742 4689999999999999999999998755 56899987542 2599999
Q ss_pred hhhceeEEEEECCCCEEEEecCCCC
Q 039412 409 MQQQNHRILYDVPNSRLGVARELCT 433 (433)
Q Consensus 409 ~fl~~~y~vfD~~~~riGfa~~~C~ 433 (433)
.|||++|++||++++|||||+++|+
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcC
Confidence 9999999999999999999999995
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.2e-59 Score=471.55 Aligned_cols=308 Identities=17% Similarity=0.347 Sum_probs=254.7
Q ss_pred eeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCCC
Q 039412 81 SVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQV 157 (433)
Q Consensus 81 ~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~~ 157 (433)
...|+.+ +.+.+|+++|+||||||+|+|+|||||+++||+|..|. .|..|+ |||++|+||+.+.+..
T Consensus 109 ~~~~l~n----~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------ 178 (482)
T PTZ00165 109 LQQDLLN----FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------ 178 (482)
T ss_pred cceeccc----ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC------
Confidence 4566654 35899999999999999999999999999999999998 488888 9999999999842111
Q ss_pred CCCCCCCCCceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-C--CCCCeEeecCCCCCch---------
Q 039412 158 PNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-S--VPPQGLLGLGRGSLSL--------- 225 (433)
Q Consensus 158 ~~~~C~~~~~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~--~~~~GilGLg~~~~s~--------- 225 (433)
....+.+.||+|++.|.+++|+|++++.+++++.||+++...+. + ..+|||||||++..+.
T Consensus 179 -------~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~ 251 (482)
T PTZ00165 179 -------ESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPI 251 (482)
T ss_pred -------ccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCH
Confidence 01257799999999999999999999999999999999987542 3 3689999999987632
Q ss_pred ---hhhhccccCCceEEecCCCCCCCCcceEEecCCC---C--CCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCC
Q 039412 226 ---LAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIG---Q--PKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPP 297 (433)
Q Consensus 226 ---~~q~~~i~~~~Fs~~l~~~~~~~~~G~l~fGg~d---~--~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (433)
+.+++.+.+++||+||.+. ...+|+|+|||+| + .+++.|+|+.. ..+|.|++++|+|+++.+...
T Consensus 252 ~~~l~~qgli~~~~FS~yL~~~--~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~~- 324 (482)
T PTZ00165 252 VDNIKKQNLLKRNIFSFYMSKD--LNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGFC- 324 (482)
T ss_pred HHHHHHcCCcccceEEEEeccC--CCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeeec-
Confidence 2356889999999999863 3447999999998 3 46899999987 689999999999999877643
Q ss_pred CCcccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCc-----EEE
Q 039412 298 GALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGM-----NVT 372 (433)
Q Consensus 298 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~-----~~~ 372 (433)
..+..+|+||||+++++|++++++|.+++ +.. .+|+.. ..+|+|+|+|+|. +|+
T Consensus 325 -------~~~~~aIiDTGTSli~lP~~~~~~i~~~i----~~~---------~~C~~~-~~lP~itf~f~g~~g~~v~~~ 383 (482)
T PTZ00165 325 -------DRKCKAAIDTGSSLITGPSSVINPLLEKI----PLE---------EDCSNK-DSLPRISFVLEDVNGRKIKFD 383 (482)
T ss_pred -------CCceEEEEcCCCccEeCCHHHHHHHHHHc----CCc---------cccccc-ccCCceEEEECCCCCceEEEE
Confidence 12468999999999999999999977664 221 389987 7899999999874 899
Q ss_pred eCCCCeEEEe---cCCCeEEE-EEEecCC-CCCCceeEechhhhceeEEEEECCCCEEEEecCCCC
Q 039412 373 LPQDNLLIHS---TAGSITCL-AMAAAPD-NVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT 433 (433)
Q Consensus 373 l~~~~y~~~~---~~~~~~C~-~~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~ 433 (433)
|+|++|+++. ..++..|+ +++..+. ...++.||||++|||+||+|||++++|||||+++|+
T Consensus 384 l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 384 MDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred EchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 9999999974 23456896 5776432 122367999999999999999999999999999985
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-58 Score=455.21 Aligned_cols=333 Identities=36% Similarity=0.645 Sum_probs=279.5
Q ss_pred cccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC-CCCC-C-C-CCCCCCCccccccCCCcccCCCCCCCCCCC
Q 039412 90 QITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV-GCSS-T-V-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGG 165 (433)
Q Consensus 90 ~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~-~C~~-~-~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~ 165 (433)
....+++|+++|.||||||+|.|++||||+++||+|..|. .|.. + + |||++|+||+.+.|+++.|.......|.++
T Consensus 40 ~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~ 119 (398)
T KOG1339|consen 40 SSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNS 119 (398)
T ss_pred ccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCC
Confidence 3445789999999999999999999999999999999999 8953 4 6 999999999999999999998876655588
Q ss_pred CceeEEecCC-CceEEeEEEEEEEecC---cccCceEEEeeeccCCC--C-CCCCeEeecCCCCCchhhhhccccC--Cc
Q 039412 166 ACAFNLTYGS-STIAANLSQDTISLAT---DIVPGYTFGCIQKATGN--S-VPPQGLLGLGRGSLSLLAQTQNLYQ--ST 236 (433)
Q Consensus 166 ~~~~~~~Y~~-g~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~--~-~~~~GilGLg~~~~s~~~q~~~i~~--~~ 236 (433)
.|.|.+.||+ +.++|++++|+|++++ ..++++.|||+..+.+. . ..++||||||+..+++..|+..... ++
T Consensus 120 ~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~ 199 (398)
T KOG1339|consen 120 SCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINV 199 (398)
T ss_pred cCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCcee
Confidence 9999999999 7789999999999998 78888999999998753 2 4689999999999999999755433 36
Q ss_pred eEEecCCCCCC-CCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEE
Q 039412 237 FSYCLPSFKAL-SFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTII 312 (433)
Q Consensus 237 Fs~~l~~~~~~-~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 312 (433)
||+||.+.... ...|.|+||++| +.+.+.|+||+.++. .+|.|++.+|+|+++. .+++..+.. ...++|+
T Consensus 200 FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~---~~~~~ii 273 (398)
T KOG1339|consen 200 FSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCT---DGGGAII 273 (398)
T ss_pred EEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEec---CCCCEEE
Confidence 99999986322 258999999998 557899999999642 5999999999999977 655555542 2589999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCC----CceEEEEEe-CcEEEeCCCCeEEEecCCCe
Q 039412 313 DSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIV----APTITLMFS-GMNVTLPQDNLLIHSTAGSI 387 (433)
Q Consensus 313 DSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~----~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~ 387 (433)
||||++++||.++|++|.++|.+.+.. .......+++|+.. .. +|.|+|+|+ |+.|.+++++|+++...+..
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~-~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~ 350 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSI-STSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGG 350 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccC-CCCcccCCcEEEEECCCcEEEeCccceEEEECCCCC
Confidence 999999999999999999999886410 01122234899988 44 999999999 79999999999998776332
Q ss_pred EEEEEEecCCCCCCceeEechhhhceeEEEEECC-CCEEEEec--CCCC
Q 039412 388 TCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVP-NSRLGVAR--ELCT 433 (433)
Q Consensus 388 ~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~-~~riGfa~--~~C~ 433 (433)
.|+++....+.. +.||||+.|||+++++||.. ++|||||+ .+|+
T Consensus 351 ~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 351 VCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred ceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 399877655432 47999999999999999999 99999999 8885
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-58 Score=447.25 Aligned_cols=300 Identities=23% Similarity=0.374 Sum_probs=249.7
Q ss_pred CCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC----CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCc
Q 039412 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV----GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGAC 167 (433)
Q Consensus 93 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~----~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~ 167 (433)
.+.+|+++|.||||+|+++|+|||||+++||+|..|. .|..++ |||++|+||+.. ++
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~------------------~~ 64 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKN------------------GT 64 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeC------------------Cc
Confidence 4789999999999999999999999999999999997 577777 999999999875 68
Q ss_pred eeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-C--CCCCeEeecCCCCCchh---------hhhccccCC
Q 039412 168 AFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-S--VPPQGLLGLGRGSLSLL---------AQTQNLYQS 235 (433)
Q Consensus 168 ~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~--~~~~GilGLg~~~~s~~---------~q~~~i~~~ 235 (433)
.|.+.|++|++.|.+++|+|+|++..++++.|||++...+. + ...+||||||++..+.. .+++.+.++
T Consensus 65 ~~~i~Yg~G~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~ 144 (325)
T cd05490 65 EFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQN 144 (325)
T ss_pred EEEEEECCcEEEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999887653 2 36799999999876642 256888999
Q ss_pred ceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEE
Q 039412 236 TFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTII 312 (433)
Q Consensus 236 ~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 312 (433)
+||+||.+..+....|+|+|||+| +.+++.|+|+.. ..+|.|++++|+|+++..... ....+||
T Consensus 145 ~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~---------~~~~aii 211 (325)
T cd05490 145 VFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCK---------GGCEAIV 211 (325)
T ss_pred EEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecC---------CCCEEEE
Confidence 999999864333357999999999 679999999976 579999999999998643221 2468999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecC-CCeEEEE
Q 039412 313 DSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTA-GSITCLA 391 (433)
Q Consensus 313 DSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~-~~~~C~~ 391 (433)
||||+++++|++++++|.+++.+ .. ......+++|+.. ..+|+|+|+|+|+.++|+|++|+++... +...|++
T Consensus 212 DSGTt~~~~p~~~~~~l~~~~~~----~~-~~~~~~~~~C~~~-~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~ 285 (325)
T cd05490 212 DTGTSLITGPVEEVRALQKAIGA----VP-LIQGEYMIDCEKI-PTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLS 285 (325)
T ss_pred CCCCccccCCHHHHHHHHHHhCC----cc-ccCCCEEeccccc-ccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEee
Confidence 99999999999999998877643 21 1122233899987 7899999999999999999999987543 3468975
Q ss_pred -EEecCCC-CCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 392 -MAAAPDN-VNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 392 -~~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
++..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 286 ~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 286 GFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 6553211 1125799999999999999999999999996
No 5
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3e-57 Score=437.80 Aligned_cols=290 Identities=21% Similarity=0.385 Sum_probs=245.4
Q ss_pred cCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC---CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCc
Q 039412 92 TQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV---GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGAC 167 (433)
Q Consensus 92 ~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~---~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~ 167 (433)
+.+.+|+++|.||||+|+++|+|||||+++||+|..|. .|..++ |||++|+|++.. +.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~------------------~~ 67 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKN------------------GT 67 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccC------------------CC
Confidence 34789999999999999999999999999999999996 798887 999999999886 67
Q ss_pred eeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCch---------hhhhccccCC
Q 039412 168 AFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLSL---------LAQTQNLYQS 235 (433)
Q Consensus 168 ~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s~---------~~q~~~i~~~ 235 (433)
.+.+.|++|++.|.+++|+|++++.+++++.||+++...+. ....+||||||++..+. +.+++.|.++
T Consensus 68 ~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~ 147 (317)
T cd06098 68 SASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEP 147 (317)
T ss_pred EEEEEcCCceEEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCC
Confidence 89999999999999999999999999999999999876542 24689999999987654 2356788899
Q ss_pred ceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEE
Q 039412 236 TFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTII 312 (433)
Q Consensus 236 ~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 312 (433)
+||+||.+.......|+|+|||+| +.|+++|+|+.. ..+|.|++++|+|+++.+.... ....+||
T Consensus 148 ~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~--------~~~~aiv 215 (317)
T cd06098 148 VFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCA--------GGCAAIA 215 (317)
T ss_pred EEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecC--------CCcEEEE
Confidence 999999874333457999999998 679999999976 5799999999999998875431 2468999
Q ss_pred ccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecC-CCeEEEE
Q 039412 313 DSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTA-GSITCLA 391 (433)
Q Consensus 313 DSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~-~~~~C~~ 391 (433)
||||+++++|++++++|. ..++|+.. ..+|+|+|+|+|+.++|++++|+++... ....|++
T Consensus 216 DTGTs~~~lP~~~~~~i~-----------------~~~~C~~~-~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~ 277 (317)
T cd06098 216 DSGTSLLAGPTTIVTQIN-----------------SAVDCNSL-SSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCIS 277 (317)
T ss_pred ecCCcceeCCHHHHHhhh-----------------ccCCcccc-ccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEec
Confidence 999999999998877642 23789977 6899999999999999999999987544 2458975
Q ss_pred -EEecCC-CCCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 392 -MAAAPD-NVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 392 -~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
++..+. ...++.||||+.|||++|+|||++++|||||+
T Consensus 278 ~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 278 GFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred eEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 654331 11225799999999999999999999999996
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-57 Score=438.92 Aligned_cols=291 Identities=21% Similarity=0.390 Sum_probs=249.4
Q ss_pred CCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCcee
Q 039412 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAF 169 (433)
Q Consensus 93 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~ 169 (433)
.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|..++ |||++|+|++.. ++.|
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~------------------~~~~ 68 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST------------------GQPL 68 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC------------------CcEE
Confidence 4789999999999999999999999999999999998 477777 999999999987 6899
Q ss_pred EEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCCC---CCCCeEeecCCCCCc------h---hhhhccccCCce
Q 039412 170 NLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS---VPPQGLLGLGRGSLS------L---LAQTQNLYQSTF 237 (433)
Q Consensus 170 ~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~---~~~~GilGLg~~~~s------~---~~q~~~i~~~~F 237 (433)
.+.|++|++.|.+++|+|++++..++++.|||+....+.+ ...+||||||++..+ + +.+++.|.+++|
T Consensus 69 ~~~yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~F 148 (317)
T cd05478 69 SIQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLF 148 (317)
T ss_pred EEEECCceEEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEE
Confidence 9999998899999999999999999999999998776542 358999999987554 2 335688999999
Q ss_pred EEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEcc
Q 039412 238 SYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDS 314 (433)
Q Consensus 238 s~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDS 314 (433)
|+||.+. ....|+|+|||+| +.|+++|+|+.. ..+|.|++++|+||++.+... .+..+||||
T Consensus 149 S~~L~~~--~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~---------~~~~~iiDT 213 (317)
T cd05478 149 SVYLSSN--GQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACS---------GGCQAIVDT 213 (317)
T ss_pred EEEeCCC--CCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccC---------CCCEEEECC
Confidence 9999984 3457999999998 679999999976 689999999999999987542 246899999
Q ss_pred ccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEE-E
Q 039412 315 GTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLA-M 392 (433)
Q Consensus 315 Gt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~-~ 392 (433)
||+++++|++++++|++++... ....+.+ ++|+.. ..+|.|+|+|+|++++|++++|+++. ...|+. +
T Consensus 214 Gts~~~lp~~~~~~l~~~~~~~------~~~~~~~~~~C~~~-~~~P~~~f~f~g~~~~i~~~~y~~~~---~~~C~~~~ 283 (317)
T cd05478 214 GTSLLVGPSSDIANIQSDIGAS------QNQNGEMVVNCSSI-SSMPDVVFTINGVQYPLPPSAYILQD---QGSCTSGF 283 (317)
T ss_pred CchhhhCCHHHHHHHHHHhCCc------cccCCcEEeCCcCc-ccCCcEEEEECCEEEEECHHHheecC---CCEEeEEE
Confidence 9999999999999988776432 1123344 899987 68999999999999999999999865 358985 6
Q ss_pred EecCCCCCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 393 AAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 393 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
+..... +.||||++|||++|+|||++++|||||+
T Consensus 284 ~~~~~~---~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 284 QSMGLG---ELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EeCCCC---CeEEechHHhcceEEEEeCCCCEEeecC
Confidence 654432 4799999999999999999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.1e-57 Score=438.95 Aligned_cols=294 Identities=20% Similarity=0.380 Sum_probs=246.8
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEec
Q 039412 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTY 173 (433)
Q Consensus 97 Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 173 (433)
|+++|+||||+|+++|+|||||+++||+|..|. .|..++ |||++|+|++.. ++.|.+.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~------------------~~~~~i~Y 62 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSN------------------GEAFSIQY 62 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccC------------------CcEEEEEe
Confidence 899999999999999999999999999999998 688888 999999999886 78999999
Q ss_pred CCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-C--CCCCeEeecCCCCCch---------hhhhccccCCceEEec
Q 039412 174 GSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-S--VPPQGLLGLGRGSLSL---------LAQTQNLYQSTFSYCL 241 (433)
Q Consensus 174 ~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~--~~~~GilGLg~~~~s~---------~~q~~~i~~~~Fs~~l 241 (433)
++|++.|.+++|+|++++.+++++.|||+..+.+. + ...+||||||++..+. +.+++.+..++||+||
T Consensus 63 g~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L 142 (316)
T cd05486 63 GTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYM 142 (316)
T ss_pred CCcEEEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEE
Confidence 99999999999999999999999999998876543 2 3689999999987653 2356888899999999
Q ss_pred CCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccce
Q 039412 242 PSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVF 318 (433)
Q Consensus 242 ~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~ 318 (433)
.+.......|+|+|||+| +.|++.|+|+.. ..+|.|++++|+|+++.+..+ .+..+||||||++
T Consensus 143 ~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~---------~~~~aiiDTGTs~ 209 (316)
T cd05486 143 SRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCS---------DGCQAIVDTGTSL 209 (316)
T ss_pred ccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecC---------CCCEEEECCCcch
Confidence 874233457999999998 679999999976 689999999999999876533 2468999999999
Q ss_pred eeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEec-CCCeEEEE-EEec
Q 039412 319 TRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHST-AGSITCLA-MAAA 395 (433)
Q Consensus 319 ~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~ 395 (433)
+++|++++++|.+.+. +. . ..+.| ++|+.. ..+|+|+|+|+|++++|++++|++... .++..|+. ++..
T Consensus 210 ~~lP~~~~~~l~~~~~----~~--~-~~~~~~~~C~~~-~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~ 281 (316)
T cd05486 210 ITGPSGDIKQLQNYIG----AT--A-TDGEYGVDCSTL-SLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGL 281 (316)
T ss_pred hhcCHHHHHHHHHHhC----Cc--c-cCCcEEEecccc-ccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEEC
Confidence 9999999999766653 22 1 12335 799976 679999999999999999999998652 23568974 6553
Q ss_pred CCC-CCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 396 PDN-VNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 396 ~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
... ..++.||||++|||++|+|||.+++|||||+
T Consensus 282 ~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 282 DIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 311 1225799999999999999999999999996
No 8
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.3e-56 Score=428.65 Aligned_cols=291 Identities=41% Similarity=0.769 Sum_probs=242.2
Q ss_pred cEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecCC
Q 039412 96 TYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS 175 (433)
Q Consensus 96 ~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~~ 175 (433)
+|+++|.||||||++.|++||||+++||+|.+| |.|.++|++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c--------------------------------------~~~~i~Yg~ 42 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------------------CLYQVSYGD 42 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC--------------------------------------CeeeeEeCC
Confidence 599999999999999999999999999987653 578999999
Q ss_pred Cc-eEEeEEEEEEEecCc-ccCceEEEeeeccCCCCCCCCeEeecCCCCCchhhhhccccCCceEEecCCCCCCCCcceE
Q 039412 176 ST-IAANLSQDTISLATD-IVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSGSL 253 (433)
Q Consensus 176 g~-~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~GilGLg~~~~s~~~q~~~i~~~~Fs~~l~~~~~~~~~G~l 253 (433)
|+ ++|.+++|+|+|++. .++++.|||+....+.+...+||||||+...+++.|+....+++||+||.+.. ....|+|
T Consensus 43 Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~-~~~~G~l 121 (299)
T cd05472 43 GSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRS-SSSSGYL 121 (299)
T ss_pred CceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCC-CCCCceE
Confidence 77 479999999999987 89999999999887766689999999999999998876656789999998742 2457999
Q ss_pred EecCCCC-CCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHHHH
Q 039412 254 RLGPIGQ-PKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDV 332 (433)
Q Consensus 254 ~fGg~d~-~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~ 332 (433)
+|||+|. .+++.|+|++.++....+|.|+|++|+||++.+.+++.. .....+||||||++++||+++|++|.++
T Consensus 122 ~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~ 196 (299)
T cd05472 122 SFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDA 196 (299)
T ss_pred EeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHHHHH
Confidence 9999994 589999999986544579999999999999988654221 1346899999999999999999999999
Q ss_pred HHHHhcCCccccCCCCccCCCCCC----CCCceEEEEEe-CcEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEec
Q 039412 333 FRRRVGSNLTVTSLGGFDTCYSVP----IVAPTITLMFS-GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIA 407 (433)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~C~~~~----~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG 407 (433)
+.+++...........+..|++.. ..+|+|+|+|+ |++++|++++|+++...++..|+++...... .+.||||
T Consensus 197 l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~--~~~~ilG 274 (299)
T cd05472 197 FRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDD--GGLSIIG 274 (299)
T ss_pred HHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCC--CCCEEEc
Confidence 988765431111111223587541 57999999998 7999999999999544446789987765322 2479999
Q ss_pred hhhhceeEEEEECCCCEEEEecCCC
Q 039412 408 NMQQQNHRILYDVPNSRLGVARELC 432 (433)
Q Consensus 408 ~~fl~~~y~vfD~~~~riGfa~~~C 432 (433)
+.|||++|+|||++++|||||+++|
T Consensus 275 ~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 275 NVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred hHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999
No 9
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.4e-56 Score=434.92 Aligned_cols=299 Identities=22% Similarity=0.386 Sum_probs=250.1
Q ss_pred cCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC----CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCC
Q 039412 92 TQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV----GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGA 166 (433)
Q Consensus 92 ~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~----~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~ 166 (433)
+.+..|+++|+||||+|+++|+|||||+++||++..|. .|..++ |||++|+|++.. +
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~------------------~ 65 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN------------------G 65 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC------------------C
Confidence 34789999999999999999999999999999998887 477777 999999999986 7
Q ss_pred ceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCch---------hhhhccccC
Q 039412 167 CAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLSL---------LAQTQNLYQ 234 (433)
Q Consensus 167 ~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s~---------~~q~~~i~~ 234 (433)
|.|++.|++|++.|.+++|+|++++..+. +.||++...... ....+||||||++..+. +.+++.|.+
T Consensus 66 ~~~~~~Yg~g~~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~ 144 (326)
T cd05487 66 TEFTIHYASGTVKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKE 144 (326)
T ss_pred EEEEEEeCCceEEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCC
Confidence 99999999999999999999999998874 889999876431 24689999999986652 345688999
Q ss_pred CceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceE
Q 039412 235 STFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTI 311 (433)
Q Consensus 235 ~~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~i 311 (433)
++||+||.+.......|+|+|||+| +.|+++|+|+.. ..+|.|++++|+|+++.+... .+..+|
T Consensus 145 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~---------~~~~ai 211 (326)
T cd05487 145 DVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCE---------DGCTAV 211 (326)
T ss_pred CEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecC---------CCCEEE
Confidence 9999999875333457999999998 679999999976 579999999999999877543 246899
Q ss_pred EccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecC-CCeEE
Q 039412 312 IDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTA-GSITC 389 (433)
Q Consensus 312 iDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~-~~~~C 389 (433)
|||||+++++|++++++|++++.+.. . ...| ++|+.. ..+|+|+|+|+|+.++|++++|+++..+ ++..|
T Consensus 212 iDSGts~~~lP~~~~~~l~~~~~~~~-----~--~~~y~~~C~~~-~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C 283 (326)
T cd05487 212 VDTGASFISGPTSSISKLMEALGAKE-----R--LGDYVVKCNEV-PTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLC 283 (326)
T ss_pred ECCCccchhCcHHHHHHHHHHhCCcc-----c--CCCEEEecccc-CCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEE
Confidence 99999999999999999887764321 1 2344 899987 7899999999999999999999987543 35689
Q ss_pred E-EEEecCCC-CCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 390 L-AMAAAPDN-VNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 390 ~-~~~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
+ +++..+.. ..++.||||++|||++|+|||++++|||||++
T Consensus 284 ~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 284 TVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 7 56654321 12257999999999999999999999999986
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.1e-56 Score=431.39 Aligned_cols=296 Identities=23% Similarity=0.435 Sum_probs=249.0
Q ss_pred CccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeE
Q 039412 94 SPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFN 170 (433)
Q Consensus 94 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~ 170 (433)
+..|+++|.||||||++.|+|||||+++||+|..|. .|..++ |||++|+||+.. +|.|+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~------------------~~~~~ 62 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN------------------GETFS 62 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC------------------CcEEE
Confidence 468999999999999999999999999999999998 587777 999999999876 78999
Q ss_pred EecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-C--CCCCeEeecCCCCCc------hhh---hhccccCCceE
Q 039412 171 LTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-S--VPPQGLLGLGRGSLS------LLA---QTQNLYQSTFS 238 (433)
Q Consensus 171 ~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~---q~~~i~~~~Fs 238 (433)
+.|++|++.|.+++|+|++++.+++++.|||++...+. + ...+||||||++..+ ++. +++.|.+++||
T Consensus 63 ~~Yg~Gs~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS 142 (318)
T cd05477 63 LQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFS 142 (318)
T ss_pred EEECCcEEEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEE
Confidence 99999999999999999999999999999999986543 2 367999999986543 333 45789999999
Q ss_pred EecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccc
Q 039412 239 YCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSG 315 (433)
Q Consensus 239 ~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSG 315 (433)
+||.+. .....|.|+|||+| +.+++.|+|+.. ..+|.|++++|+|+++.+... ..+..+|||||
T Consensus 143 ~~L~~~-~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~--------~~~~~~iiDSG 209 (318)
T cd05477 143 FYLSGQ-QGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWC--------SQGCQAIVDTG 209 (318)
T ss_pred EEEcCC-CCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEeccc--------CCCceeeECCC
Confidence 999874 23347999999999 678999999976 589999999999999887532 12457999999
Q ss_pred cceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEE-EEE
Q 039412 316 TVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCL-AMA 393 (433)
Q Consensus 316 t~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~-~~~ 393 (433)
|+++++|++++++|++++.++.. ..+.+ ++|+.. ..+|.|+|+|+|+++.|++++|+++. ...|+ +++
T Consensus 210 tt~~~lP~~~~~~l~~~~~~~~~------~~~~~~~~C~~~-~~~p~l~~~f~g~~~~v~~~~y~~~~---~~~C~~~i~ 279 (318)
T cd05477 210 TSLLTAPQQVMSTLMQSIGAQQD------QYGQYVVNCNNI-QNLPTLTFTINGVSFPLPPSAYILQN---NGYCTVGIE 279 (318)
T ss_pred CccEECCHHHHHHHHHHhCCccc------cCCCEEEeCCcc-ccCCcEEEEECCEEEEECHHHeEecC---CCeEEEEEE
Confidence 99999999999998887654321 23344 899987 78999999999999999999999874 34896 676
Q ss_pred ecCC--CCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 394 AAPD--NVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 394 ~~~~--~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
+... ....+.||||+.|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 280 PTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 5321 111246999999999999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.2e-56 Score=429.33 Aligned_cols=293 Identities=24% Similarity=0.399 Sum_probs=247.9
Q ss_pred CCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCcee
Q 039412 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAF 169 (433)
Q Consensus 93 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~ 169 (433)
.+..|+++|.||||+|++.|+|||||+++||+|..|. .|..++ |+|++|+|++.. +|.+
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~------------------~~~~ 68 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN------------------GTEF 68 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC------------------CCEE
Confidence 3788999999999999999999999999999999997 587777 999999999876 6899
Q ss_pred EEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCchh---------hhhccccCCce
Q 039412 170 NLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLSLL---------AQTQNLYQSTF 237 (433)
Q Consensus 170 ~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s~~---------~q~~~i~~~~F 237 (433)
.+.|++|++.|.+++|+|++++..++++.|||++...+. ....+||||||++..+.. .+++.|.+++|
T Consensus 69 ~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 148 (320)
T cd05488 69 KIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVF 148 (320)
T ss_pred EEEECCceEEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEE
Confidence 999999999999999999999999999999999877654 236799999999876643 24688899999
Q ss_pred EEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEcc
Q 039412 238 SYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDS 314 (433)
Q Consensus 238 s~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDS 314 (433)
|+||.+. ....|.|+|||+| +.++++|+|+.. ..+|.|++++|+||++.+..+ +..++|||
T Consensus 149 S~~L~~~--~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~----------~~~~ivDS 212 (320)
T cd05488 149 SFYLGSS--EEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELE----------NTGAAIDT 212 (320)
T ss_pred EEEecCC--CCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccC----------CCeEEEcC
Confidence 9999984 2457999999998 678999999986 579999999999999877543 35899999
Q ss_pred ccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEE-E
Q 039412 315 GTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLA-M 392 (433)
Q Consensus 315 Gt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~-~ 392 (433)
||+++++|++++++|.+.+. .. ......+ ++|+.. ..+|.|+|+|+|++++|++++|+++.. ..|+. +
T Consensus 213 Gtt~~~lp~~~~~~l~~~~~----~~--~~~~~~~~~~C~~~-~~~P~i~f~f~g~~~~i~~~~y~~~~~---g~C~~~~ 282 (320)
T cd05488 213 GTSLIALPSDLAEMLNAEIG----AK--KSWNGQYTVDCSKV-DSLPDLTFNFDGYNFTLGPFDYTLEVS---GSCISAF 282 (320)
T ss_pred CcccccCCHHHHHHHHHHhC----Cc--cccCCcEEeecccc-ccCCCEEEEECCEEEEECHHHheecCC---CeEEEEE
Confidence 99999999999999776653 22 1123345 899987 689999999999999999999998542 47986 4
Q ss_pred EecCCC-CCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 393 AAAPDN-VNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 393 ~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
...... ..+..||||+.|||++|+|||++++|||||+
T Consensus 283 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 283 TGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 443211 1124799999999999999999999999996
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.1e-55 Score=428.83 Aligned_cols=299 Identities=23% Similarity=0.392 Sum_probs=250.0
Q ss_pred cCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC----CCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCC
Q 039412 92 TQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV----GCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGA 166 (433)
Q Consensus 92 ~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~----~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~ 166 (433)
+.+.+|+++|+||||+|+++|++||||+++||+|..|. .|..++ |||++|+|++.. .
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~------------------~ 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKN------------------G 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEEC------------------C
Confidence 34789999999999999999999999999999999997 577677 999999999986 6
Q ss_pred ceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-C--CCCCeEeecCCCCCchh---------hhhccccC
Q 039412 167 CAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-S--VPPQGLLGLGRGSLSLL---------AQTQNLYQ 234 (433)
Q Consensus 167 ~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-~--~~~~GilGLg~~~~s~~---------~q~~~i~~ 234 (433)
|.|.+.|++|++.|.+++|+|++++..++++.|||+.+..+. + ...+||||||++..+.. .+++.|.+
T Consensus 69 ~~~~i~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~ 148 (329)
T cd05485 69 TEFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDA 148 (329)
T ss_pred eEEEEEECCceEEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCC
Confidence 899999999989999999999999999999999999876543 2 36799999999876642 34588889
Q ss_pred CceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceE
Q 039412 235 STFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTI 311 (433)
Q Consensus 235 ~~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~i 311 (433)
++||+||.+..+....|+|+|||+| +.|+++|+|+.. ..+|.|++++++|+++.+.. .+..+|
T Consensus 149 ~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~----------~~~~~i 214 (329)
T cd05485 149 PVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCS----------GGCQAI 214 (329)
T ss_pred CEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecC----------CCcEEE
Confidence 9999999874333457999999998 678999999976 68999999999999987631 245899
Q ss_pred EccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecC-CCeEE
Q 039412 312 IDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTA-GSITC 389 (433)
Q Consensus 312 iDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~-~~~~C 389 (433)
|||||+++++|++++++|.+++.. .. .. ...| ++|+.. .++|+|+|+|+|+.+.|++++|+++... +..+|
T Consensus 215 iDSGtt~~~lP~~~~~~l~~~~~~----~~-~~-~~~~~~~C~~~-~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C 287 (329)
T cd05485 215 ADTGTSLIAGPVDEIEKLNNAIGA----KP-II-GGEYMVNCSAI-PSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTIC 287 (329)
T ss_pred EccCCcceeCCHHHHHHHHHHhCC----cc-cc-CCcEEEecccc-ccCCcEEEEECCEEeEEChHHeEEEecCCCCCEE
Confidence 999999999999999998776543 21 11 2344 899986 6789999999999999999999987653 34689
Q ss_pred EE-EEecCC-CCCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 390 LA-MAAAPD-NVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 390 ~~-~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
+. ++.... ...++.||||+.|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 288 LSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred eeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 75 664321 11124799999999999999999999999985
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.5e-55 Score=427.61 Aligned_cols=289 Identities=24% Similarity=0.446 Sum_probs=239.0
Q ss_pred ccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCC--C-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEE
Q 039412 95 PTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSST--V-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNL 171 (433)
Q Consensus 95 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~--~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 171 (433)
+.|+++|.||||+|++.|+|||||+++||+|..|..|..+ + |||++|+|++.+.|++..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 5799999999999999999999999999999999999544 6 999999999999999999954 2357777899999
Q ss_pred ecCCCc-eEEeEEEEEEEecCcccC-------ceEEEeeeccCCCC--CCCCeEeecCCCCCchh-------hhhcccc-
Q 039412 172 TYGSST-IAANLSQDTISLATDIVP-------GYTFGCIQKATGNS--VPPQGLLGLGRGSLSLL-------AQTQNLY- 233 (433)
Q Consensus 172 ~Y~~g~-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~--~~~~GilGLg~~~~s~~-------~q~~~i~- 233 (433)
.|++|+ +.|.+++|+|+|++..++ ++.|||+....+.+ ...+||||||+...+.. .+++.+.
T Consensus 80 ~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~ 159 (326)
T cd06096 80 SYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLK 159 (326)
T ss_pred EECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccccc
Confidence 999975 789999999999986653 47899999876643 46899999999865321 1233333
Q ss_pred -CCceEEecCCCCCCCCcceEEecCCC---CC----------CCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCC
Q 039412 234 -QSTFSYCLPSFKALSFSGSLRLGPIG---QP----------KRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGA 299 (433)
Q Consensus 234 -~~~Fs~~l~~~~~~~~~G~l~fGg~d---~~----------~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (433)
.++||+||++. .|.|+|||+| +. +++.|+|+.. ..+|.|++++|+|+++.....
T Consensus 160 ~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~--- 227 (326)
T cd06096 160 KDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSG--- 227 (326)
T ss_pred CCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEccccccee---
Confidence 48999999862 6999999998 33 7899999987 479999999999998761110
Q ss_pred cccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEe-CcEEEeCCCCe
Q 039412 300 LQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFS-GMNVTLPQDNL 378 (433)
Q Consensus 300 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~-g~~~~l~~~~y 378 (433)
......+||||||++++||+++|++|.+++ |+|+|+|+ |++++|+|++|
T Consensus 228 ----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------P~i~~~f~~g~~~~i~p~~y 277 (326)
T cd06096 228 ----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------PTITIIFENNLKIDWKPSSY 277 (326)
T ss_pred ----cccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------CcEEEEEcCCcEEEECHHHh
Confidence 023578999999999999999999976654 79999998 79999999999
Q ss_pred EEEecCCCeEEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecCCCC
Q 039412 379 LIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT 433 (433)
Q Consensus 379 ~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~ 433 (433)
+++... ...|+.+.. .+ +.+|||++|||++|+|||++++|||||+++|.
T Consensus 278 ~~~~~~-~~c~~~~~~-~~----~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 278 LYKKES-FWCKGGEKS-VS----NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ccccCC-ceEEEEEec-CC----CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 987654 233444443 22 36999999999999999999999999999995
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.4e-55 Score=434.74 Aligned_cols=301 Identities=23% Similarity=0.345 Sum_probs=247.6
Q ss_pred ceeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCC
Q 039412 80 KSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQ 156 (433)
Q Consensus 80 ~~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~ 156 (433)
...+||.+- .+.+|+++|+||||+|+++|+|||||+++||+|..|. .|..++ |||++|+|++..
T Consensus 127 ~~~v~L~n~----~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~--------- 193 (453)
T PTZ00147 127 FDNVELKDL----ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD--------- 193 (453)
T ss_pred CCeeecccc----CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC---------
Confidence 356777543 4789999999999999999999999999999999998 577777 999999999887
Q ss_pred CCCCCCCCCCceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC-----CCCCCeEeecCCCCCch------
Q 039412 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN-----SVPPQGLLGLGRGSLSL------ 225 (433)
Q Consensus 157 ~~~~~C~~~~~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~-----~~~~~GilGLg~~~~s~------ 225 (433)
++.|++.|++|++.|.+++|+|++|+.+++ ..|+++.+..+. ....|||||||++..+.
T Consensus 194 ---------~~~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~ 263 (453)
T PTZ00147 194 ---------GTKVEMNYVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPY 263 (453)
T ss_pred ---------CCEEEEEeCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCH
Confidence 789999999999999999999999999888 679998876542 13689999999987653
Q ss_pred ---hhhhccccCCceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCC
Q 039412 226 ---LAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGA 299 (433)
Q Consensus 226 ---~~q~~~i~~~~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (433)
+.+++.|.+++||+||++. ....|.|+|||+| +.|++.|+|+.. ..+|.|.++ +.+++...
T Consensus 264 ~~~L~~qg~I~~~vFS~~L~~~--~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~------ 330 (453)
T PTZ00147 264 VVELKNQNKIEQAVFTFYLPPE--DKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS------ 330 (453)
T ss_pred HHHHHHcCCCCccEEEEEecCC--CCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec------
Confidence 2346889999999999873 3457999999999 679999999975 579999998 57776432
Q ss_pred cccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCe
Q 039412 300 LQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNL 378 (433)
Q Consensus 300 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y 378 (433)
....+||||||+++++|++++++|.+++.... ......+ ++|+. ..+|+|+|.|+|..++|+|++|
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~-----~~~~~~y~~~C~~--~~lP~~~f~f~g~~~~L~p~~y 397 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK-----VPFLPLYVTTCNN--TKLPTLEFRSPNKVYTLEPEYY 397 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCee-----cCCCCeEEEeCCC--CCCCeEEEEECCEEEEECHHHh
Confidence 24689999999999999999999877763211 1122334 79996 4689999999999999999999
Q ss_pred EEEecC-CCeEEEE-EEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecCC
Q 039412 379 LIHSTA-GSITCLA-MAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAREL 431 (433)
Q Consensus 379 ~~~~~~-~~~~C~~-~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 431 (433)
+.+..+ +...|+. +++.+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 398 i~~~~~~~~~~C~~~i~~~~~~--~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 398 LQPIEDIGSALCMLNIIPIDLE--KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred eeccccCCCcEEEEEEEECCCC--CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 976433 3468974 7765422 1479999999999999999999999999875
No 15
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.5e-54 Score=418.76 Aligned_cols=313 Identities=27% Similarity=0.473 Sum_probs=255.7
Q ss_pred eCCCCce-EEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCC------------CCCCCCCcee
Q 039412 103 IGTPAQT-LLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPN------------PTCGGGACAF 169 (433)
Q Consensus 103 iGtP~q~-~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~------------~~C~~~~~~~ 169 (433)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|..... ..|.++.|.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-----------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y 70 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-----------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTA 70 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-----------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCee
Confidence 5888777 999999999999999984 578899999999999986532 2576667988
Q ss_pred EEe-cCCC-ceEEeEEEEEEEecC--------cccCceEEEeeeccC--CCCCCCCeEeecCCCCCchhhhhcc--ccCC
Q 039412 170 NLT-YGSS-TIAANLSQDTISLAT--------DIVPGYTFGCIQKAT--GNSVPPQGLLGLGRGSLSLLAQTQN--LYQS 235 (433)
Q Consensus 170 ~~~-Y~~g-~~~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~--~~~~~~~GilGLg~~~~s~~~q~~~--i~~~ 235 (433)
... |+++ .+.|++++|+|+|+. .+++++.|||+.+.. +.+..++||||||++++|+++|+.. ..++
T Consensus 71 ~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~ 150 (362)
T cd05489 71 HPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVAR 150 (362)
T ss_pred EccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCc
Confidence 765 7776 667999999999973 268899999998863 3345689999999999999998643 2468
Q ss_pred ceEEecCCCCCCCCcceEEecCCCC---------CCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCC
Q 039412 236 TFSYCLPSFKALSFSGSLRLGPIGQ---------PKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTT 306 (433)
Q Consensus 236 ~Fs~~l~~~~~~~~~G~l~fGg~d~---------~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 306 (433)
+|||||++. ....|.|+||+.+. .+.++|+||+.++....+|.|+|++|+||++.+.+++..+.+...+
T Consensus 151 ~FS~CL~~~--~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~ 228 (362)
T cd05489 151 KFALCLPSS--PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLG 228 (362)
T ss_pred ceEEEeCCC--CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccC
Confidence 999999874 24579999999872 3789999999876446799999999999999998877766555556
Q ss_pred CCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCC--------CCCCceEEEEEeC--cEEEeCC
Q 039412 307 GAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSV--------PIVAPTITLMFSG--MNVTLPQ 375 (433)
Q Consensus 307 ~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~--------~~~~P~i~f~f~g--~~~~l~~ 375 (433)
...+||||||++++||+++|++|.++|.+++...........+ ..|+.. ...+|+|+|+|+| ++++|++
T Consensus 229 ~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~ 308 (362)
T cd05489 229 PGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFG 308 (362)
T ss_pred CCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcC
Confidence 6789999999999999999999999999887654222221222 578763 1578999999986 8999999
Q ss_pred CCeEEEecCCCeEEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 376 DNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 376 ~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
++|+++... +.+|++|+..+... .+.||||+.|||++|++||++++|||||++
T Consensus 309 ~ny~~~~~~-~~~Cl~f~~~~~~~-~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 309 ANSMVQVKG-GVACLAFVDGGSEP-RPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CceEEEcCC-CcEEEEEeeCCCCC-CceEEEeeheecceEEEEECCCCEeecccC
Confidence 999998765 57899988765321 247999999999999999999999999975
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.1e-53 Score=424.31 Aligned_cols=301 Identities=21% Similarity=0.361 Sum_probs=244.4
Q ss_pred ceeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCC--CCCCCC-CCCCCCCccccccCCCcccCC
Q 039412 80 KSVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCV--GCSSTV-FNSAQSTTFKNLGCQAAQCKQ 156 (433)
Q Consensus 80 ~~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~--~C~~~~-y~~~~Sst~~~~~c~~~~C~~ 156 (433)
.-.+|+.+ +.+.+|+++|.||||+|+++|+|||||+++||+|..|. .|..++ |||++|+|++..
T Consensus 126 ~~~~~l~d----~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~--------- 192 (450)
T PTZ00013 126 NDVIELDD----VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKD--------- 192 (450)
T ss_pred CCceeeec----cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccC---------
Confidence 35566653 24779999999999999999999999999999999997 688787 999999999986
Q ss_pred CCCCCCCCCCceeEEecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---C--CCCCeEeecCCCCCch------
Q 039412 157 VPNPTCGGGACAFNLTYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---S--VPPQGLLGLGRGSLSL------ 225 (433)
Q Consensus 157 ~~~~~C~~~~~~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~--~~~~GilGLg~~~~s~------ 225 (433)
++.+.+.||+|++.|.+++|+|++|+.+++ +.|+++.+..+. + ..++||||||++..+.
T Consensus 193 ---------~~~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~ 262 (450)
T PTZ00013 193 ---------GTKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPI 262 (450)
T ss_pred ---------CcEEEEEECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCH
Confidence 689999999999999999999999999887 688888765422 1 3689999999987653
Q ss_pred ---hhhhccccCCceEEecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCC
Q 039412 226 ---LAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGA 299 (433)
Q Consensus 226 ---~~q~~~i~~~~Fs~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (433)
+.+++.|.+++||+||++. ....|.|+|||+| +.|++.|+|+.. ..+|.|+++ +.+|....
T Consensus 263 ~~~L~~qg~I~~~vFS~~L~~~--~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~------ 329 (450)
T PTZ00013 263 VVELKNQNKIDNALFTFYLPVH--DVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM------ 329 (450)
T ss_pred HHHHHhccCcCCcEEEEEecCC--CCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec------
Confidence 2346889999999999863 3457999999999 679999999975 589999998 66664432
Q ss_pred cccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCe
Q 039412 300 LQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNL 378 (433)
Q Consensus 300 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y 378 (433)
....+||||||+++++|+++++++.+.+.. .. ....+.+ ++|+. ..+|+|+|+|+|.+++|+|++|
T Consensus 330 ------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~----~~-~~~~~~y~~~C~~--~~lP~i~F~~~g~~~~L~p~~Y 396 (450)
T PTZ00013 330 ------QKANVIVDSGTTTITAPSEFLNKFFANLNV----IK-VPFLPFYVTTCDN--KEMPTLEFKSANNTYTLEPEYY 396 (450)
T ss_pred ------cccceEECCCCccccCCHHHHHHHHHHhCC----ee-cCCCCeEEeecCC--CCCCeEEEEECCEEEEECHHHh
Confidence 135799999999999999999997776532 21 1122234 89985 4689999999999999999999
Q ss_pred EEEec-CCCeEEE-EEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecCC
Q 039412 379 LIHST-AGSITCL-AMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAREL 431 (433)
Q Consensus 379 ~~~~~-~~~~~C~-~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 431 (433)
+.+.. .++..|+ ++++.... .+.||||++|||++|+|||++++|||||+++
T Consensus 397 i~~~~~~~~~~C~~~i~~~~~~--~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 397 MNPLLDVDDTLCMITMLPVDID--DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eehhccCCCCeeEEEEEECCCC--CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 97532 2346897 56654322 1479999999999999999999999999875
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.7e-53 Score=416.91 Aligned_cols=306 Identities=21% Similarity=0.306 Sum_probs=236.1
Q ss_pred ccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEec
Q 039412 95 PTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTY 173 (433)
Q Consensus 95 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 173 (433)
..|+++|.||||+|++.|+|||||+++||+|..| |..++ |||++|+|++.. +|.|++.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~--~~~~~~f~~~~SsT~~~~------------------~~~~~i~Y 61 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH--PFIHTYFHRELSSTYRDL------------------GKGVTVPY 61 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC--ccccccCCchhCcCcccC------------------CceEEEEE
Confidence 4699999999999999999999999999999877 33456 999999999987 78999999
Q ss_pred CCCceEEeEEEEEEEecCcccCc--eEEEeeeccCCCC---CCCCeEeecCCCCCch-----------hhhhccccCCce
Q 039412 174 GSSTIAANLSQDTISLATDIVPG--YTFGCIQKATGNS---VPPQGLLGLGRGSLSL-----------LAQTQNLYQSTF 237 (433)
Q Consensus 174 ~~g~~~G~~~~D~v~ig~~~~~~--~~fg~~~~~~~~~---~~~~GilGLg~~~~s~-----------~~q~~~i~~~~F 237 (433)
++|++.|.+++|+|+|++..... +.|+++....+.+ ...+||||||++.++. +.+++.+ +++|
T Consensus 62 g~Gs~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~F 140 (364)
T cd05473 62 TQGSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVF 140 (364)
T ss_pred CcceEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccce
Confidence 99999999999999998632111 2355665554432 2579999999987642 1223444 5799
Q ss_pred EEecCCC-----C--CCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCC
Q 039412 238 SYCLPSF-----K--ALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTG 307 (433)
Q Consensus 238 s~~l~~~-----~--~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 307 (433)
|+||... . .....|.|+|||+| +.+++.|+|+.. ..+|.|++++|+|+++.+..+...+. .
T Consensus 141 S~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~~~~-----~ 211 (364)
T cd05473 141 SLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCKEYN-----Y 211 (364)
T ss_pred EEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEeccccccccc-----C
Confidence 9988531 0 12347999999998 679999999986 57999999999999998875433221 2
Q ss_pred CceEEccccceeeechHHHHHHHHHHHHHhcCCccccC-CCCc-cCCCCCC----CCCceEEEEEeC------cEEEeCC
Q 039412 308 AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTS-LGGF-DTCYSVP----IVAPTITLMFSG------MNVTLPQ 375 (433)
Q Consensus 308 ~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~-~~~~-~~C~~~~----~~~P~i~f~f~g------~~~~l~~ 375 (433)
..+||||||+++++|++++++|++++.++......... ...+ ++|+... ..+|+|+|+|+| .++.|+|
T Consensus 212 ~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p 291 (364)
T cd05473 212 DKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILP 291 (364)
T ss_pred ccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECH
Confidence 47999999999999999999999999876532100111 1222 6898652 258999999976 2689999
Q ss_pred CCeEEEecC--CCeEEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecCCCC
Q 039412 376 DNLLIHSTA--GSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELCT 433 (433)
Q Consensus 376 ~~y~~~~~~--~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~ 433 (433)
++|+.+... .+..|+++...... +.||||+.|||++|+|||++++|||||+++|+
T Consensus 292 ~~Y~~~~~~~~~~~~C~~~~~~~~~---~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 292 QLYLRPVEDHGTQLDCYKFAISQST---NGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred HHhhhhhccCCCcceeeEEeeecCC---CceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 999976432 24689864332222 36999999999999999999999999999995
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-51 Score=387.82 Aligned_cols=258 Identities=39% Similarity=0.722 Sum_probs=221.6
Q ss_pred cEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecCC
Q 039412 96 TYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS 175 (433)
Q Consensus 96 ~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~~ 175 (433)
+|+++|+||||+|+++|+|||||+++||+| |.|.+.|++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------~~~~~~Y~d 39 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------CSYEYSYGD 39 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------CceEeEeCC
Confidence 599999999999999999999999999975 357899997
Q ss_pred -CceEEeEEEEEEEecCc--ccCceEEEeeeccCCC-CCCCCeEeecCCCCCchhhhhccccCCceEEecCCCCCCCCcc
Q 039412 176 -STIAANLSQDTISLATD--IVPGYTFGCIQKATGN-SVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFKALSFSG 251 (433)
Q Consensus 176 -g~~~G~~~~D~v~ig~~--~~~~~~fg~~~~~~~~-~~~~~GilGLg~~~~s~~~q~~~i~~~~Fs~~l~~~~~~~~~G 251 (433)
+.+.|.+++|+|+|++. .++++.|||++...+. ....+||||||+...+++.|+.... ++||+||.+.......|
T Consensus 40 g~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~~~~~~G 118 (265)
T cd05476 40 GSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHDDTGGSS 118 (265)
T ss_pred CceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCCCCCCCC
Confidence 67889999999999998 8999999999988652 3478999999999999998875443 79999998743245689
Q ss_pred eEEecCCCC--CCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHH
Q 039412 252 SLRLGPIGQ--PKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 252 ~l~fGg~d~--~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
+|+||++|. .+++.|+|++.++....+|.|++++|+|+++.+.++++.+.........+||||||++++||++++
T Consensus 119 ~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~--- 195 (265)
T cd05476 119 PLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY--- 195 (265)
T ss_pred eEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc---
Confidence 999999994 699999999986544579999999999999998765444433334567899999999999999886
Q ss_pred HHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEe-CcEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEech
Q 039412 330 RDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFS-GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIAN 408 (433)
Q Consensus 330 ~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~ 408 (433)
|+|+|+|+ |.++.|++++|+++... +..|++++..... +.||||+
T Consensus 196 ------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~-~~~C~~~~~~~~~---~~~ilG~ 241 (265)
T cd05476 196 ------------------------------PDLTLHFDGGADLELPPENYFVDVGE-GVVCLAILSSSSG---GVSILGN 241 (265)
T ss_pred ------------------------------CCEEEEECCCCEEEeCcccEEEECCC-CCEEEEEecCCCC---CcEEECh
Confidence 78999999 78999999999996544 5799998865322 5799999
Q ss_pred hhhceeEEEEECCCCEEEEecCCC
Q 039412 409 MQQQNHRILYDVPNSRLGVARELC 432 (433)
Q Consensus 409 ~fl~~~y~vfD~~~~riGfa~~~C 432 (433)
+|||++|++||++++|||||+++|
T Consensus 242 ~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 242 IQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred hhcccEEEEEECCCCEEeeecCCC
Confidence 999999999999999999999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.4e-51 Score=388.30 Aligned_cols=255 Identities=27% Similarity=0.525 Sum_probs=214.3
Q ss_pred ccEEEEEEeCCCCceEEEEEecCCCceeeeCC-CCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEec
Q 039412 95 PTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCT-GCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTY 173 (433)
Q Consensus 95 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~-~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 173 (433)
++|+++|.||||+|++.|++||||+++||+|. +|..| .|.|.+.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c----------------------------------~c~~~i~Y 46 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC----------------------------------QCDYEIEY 46 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC----------------------------------cCccEeEe
Confidence 47999999999999999999999999999984 56544 47899999
Q ss_pred CC-CceEEeEEEEEEEecC----cccCceEEEeeeccCCC----CCCCCeEeecCCCCCchhhhh---ccccCCceEEec
Q 039412 174 GS-STIAANLSQDTISLAT----DIVPGYTFGCIQKATGN----SVPPQGLLGLGRGSLSLLAQT---QNLYQSTFSYCL 241 (433)
Q Consensus 174 ~~-g~~~G~~~~D~v~ig~----~~~~~~~fg~~~~~~~~----~~~~~GilGLg~~~~s~~~q~---~~i~~~~Fs~~l 241 (433)
++ +.+.|.+++|+|+|+. ..++++.|||+..+.+. ....+||||||++..+++.|+ +.+ +++||+||
T Consensus 47 gd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i-~~~Fs~~l 125 (273)
T cd05475 47 ADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII-KNVIGHCL 125 (273)
T ss_pred CCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc-CceEEEEc
Confidence 97 7888999999999963 47789999999876543 236899999999999998875 456 88999999
Q ss_pred CCCCCCCCcceEEecCCC-CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceee
Q 039412 242 PSFKALSFSGSLRLGPIG-QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTR 320 (433)
Q Consensus 242 ~~~~~~~~~G~l~fGg~d-~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~ 320 (433)
++ ...|.|+||+.. +.+++.|+|+..++. ..+|.|++.+|+||++... ..+..+||||||++++
T Consensus 126 ~~----~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~----------~~~~~~ivDTGTt~t~ 190 (273)
T cd05475 126 SS----NGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTG----------GKGLEVVFDSGSSYTY 190 (273)
T ss_pred cC----CCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECc----------CCCceEEEECCCceEE
Confidence 87 346999999654 568899999987542 4799999999999998532 1346899999999999
Q ss_pred echHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeC----cEEEeCCCCeEEEecCCCeEEEEEEecC
Q 039412 321 LVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSG----MNVTLPQDNLLIHSTAGSITCLAMAAAP 396 (433)
Q Consensus 321 lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g----~~~~l~~~~y~~~~~~~~~~C~~~~~~~ 396 (433)
+|+++| +|+|+|+|++ ++++|++++|+++..+ +..|++++...
T Consensus 191 lp~~~y--------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~-~~~Cl~~~~~~ 237 (273)
T cd05475 191 FNAQAY--------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK-GNVCLGILNGS 237 (273)
T ss_pred cCCccc--------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC-CCEEEEEecCC
Confidence 999876 3899999987 6999999999987554 56899877654
Q ss_pred CCCCCceeEechhhhceeEEEEECCCCEEEEecCCC
Q 039412 397 DNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 432 (433)
Q Consensus 397 ~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 432 (433)
+....+.||||+.|||++|++||++++|||||+++|
T Consensus 238 ~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 238 EIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 322235799999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.5e-50 Score=381.00 Aligned_cols=257 Identities=23% Similarity=0.390 Sum_probs=213.9
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCC--CCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEec
Q 039412 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCS--STV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTY 173 (433)
Q Consensus 97 Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~--~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 173 (433)
|+++|+||||+|+++|+|||||+++||+|..|..|. .++ ||+++|+|++..+ .+.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------GATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------CcEEEEEe
Confidence 789999999999999999999999999999999884 346 9999999998753 68999999
Q ss_pred CCCc-eEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCchhh---------hh-ccccCCceEE
Q 039412 174 GSST-IAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLSLLA---------QT-QNLYQSTFSY 239 (433)
Q Consensus 174 ~~g~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s~~~---------q~-~~i~~~~Fs~ 239 (433)
++|+ +.|.+++|+|+|++.+++++.||+++...+. ....+||||||++..+... ++ ....+++||+
T Consensus 64 ~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~ 143 (278)
T cd06097 64 GDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTA 143 (278)
T ss_pred CCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEEE
Confidence 9975 8899999999999999999999999987652 2479999999998765422 11 1122689999
Q ss_pred ecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEcccc
Q 039412 240 CLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGT 316 (433)
Q Consensus 240 ~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt 316 (433)
||.+ ...|+|+|||+| +.|+++|+|+..+ ..+|.|++++|+|+++..... .+..++|||||
T Consensus 144 ~l~~----~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~---------~~~~~iiDSGT 207 (278)
T cd06097 144 DLRK----AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSR---------SGFSAIADTGT 207 (278)
T ss_pred EecC----CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeec---------CCceEEeecCC
Confidence 9986 347999999999 6799999999864 479999999999998743221 35789999999
Q ss_pred ceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEEEEec
Q 039412 317 VFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAA 395 (433)
Q Consensus 317 ~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~~~~~ 395 (433)
+++++|++++++|.+++. +.. .....+.| ++|.. .+|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~---g~~-~~~~~~~~~~~C~~---~~P~i~f~~----------------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVP---GAY-YDSEYGGWVFPCDT---TLPDLSFAV----------------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCc---CCc-ccCCCCEEEEECCC---CCCCEEEEE-----------------------------
Confidence 999999999999776652 111 12233445 99995 389999999
Q ss_pred CCCCCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 396 PDNVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 396 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
.||||++|||++|+|||++|+|||||+
T Consensus 252 -------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 399999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.8e-50 Score=387.24 Aligned_cols=294 Identities=29% Similarity=0.519 Sum_probs=246.2
Q ss_pred cEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCC---CCCC-CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEE
Q 039412 96 TYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGC---SSTV-FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNL 171 (433)
Q Consensus 96 ~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C---~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 171 (433)
+|+++|.||||+|+++|++||||+++||++..|..| ..+. |++++|+|++.. .+.+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~------------------~~~~~~ 62 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ------------------GKPFSI 62 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE------------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc------------------eeeeee
Confidence 599999999999999999999999999999999865 5666 999999999987 688999
Q ss_pred ecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC---CCCCCeEeecCCCCCc-------hh---hhhccccCCceE
Q 039412 172 TYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN---SVPPQGLLGLGRGSLS-------LL---AQTQNLYQSTFS 238 (433)
Q Consensus 172 ~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~---~~~~~GilGLg~~~~s-------~~---~q~~~i~~~~Fs 238 (433)
.|+++.++|.+++|+|+|++..+.++.||++....+. ....+||||||++..+ ++ .+++.|.+++||
T Consensus 63 ~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs 142 (317)
T PF00026_consen 63 SYGDGSVSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFS 142 (317)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEE
T ss_pred eccCcccccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccc
Confidence 9999889999999999999999999999999996543 4578999999975432 32 245889999999
Q ss_pred EecCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccc
Q 039412 239 YCLPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSG 315 (433)
Q Consensus 239 ~~l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSG 315 (433)
++|.+. ....|.|+|||+| +.++++|+|+.. ..+|.+.+++|.+++...... .+..++||||
T Consensus 143 l~l~~~--~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~---------~~~~~~~Dtg 207 (317)
T PF00026_consen 143 LYLNPS--DSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSS---------SGQQAILDTG 207 (317)
T ss_dssp EEEEST--TSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEE---------EEEEEEEETT
T ss_pred eeeeec--ccccchheeeccccccccCceeccCccc----ccccccccccccccccccccc---------cceeeecccc
Confidence 999984 2567999999998 679999999995 689999999999999833221 2357999999
Q ss_pred cceeeechHHHHHHHHHHHHHhcCCccccCCCCc-cCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCC-CeEEEE-E
Q 039412 316 TVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGF-DTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAG-SITCLA-M 392 (433)
Q Consensus 316 t~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~-~~~C~~-~ 392 (433)
++++++|.+++++|++.+..... . ..+ ++|... ..+|.|+|.|++.+++|++++|+.+.... ...|+. +
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~------~-~~~~~~c~~~-~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i 279 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYS------D-GVYSVPCNST-DSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGI 279 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEE------C-SEEEEETTGG-GGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESE
T ss_pred cccccccchhhHHHHhhhccccc------c-eeEEEecccc-cccceEEEeeCCEEEEecchHhcccccccccceeEeee
Confidence 99999999999998877644322 1 444 899987 77999999999999999999999887653 348975 6
Q ss_pred EecCCCCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 393 AAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 393 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
...........+|||.+|||++|++||.+++|||||+|
T Consensus 280 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 280 QPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 65221122367999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.7e-48 Score=372.33 Aligned_cols=270 Identities=20% Similarity=0.366 Sum_probs=225.2
Q ss_pred cEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecCC
Q 039412 96 TYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS 175 (433)
Q Consensus 96 ~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~~ 175 (433)
.|+++|.||||+|+++|+|||||+++||+ .|++.|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------~~~~~Y~~ 38 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------DFSISYGD 38 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------eeEEEecc
Confidence 69999999999999999999999999996 37789999
Q ss_pred -CceEEeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeecCCCCC-----------chhhh---hccccCCceEEe
Q 039412 176 -STIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGRGSL-----------SLLAQ---TQNLYQSTFSYC 240 (433)
Q Consensus 176 -g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGLg~~~~-----------s~~~q---~~~i~~~~Fs~~ 240 (433)
+.+.|.+++|+|++++..++++.|||+++.. ..+||||||+... +++.| ++.|.++.||+|
T Consensus 39 g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~ 114 (295)
T cd05474 39 GTSASGTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLY 114 (295)
T ss_pred CCcEEEEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEE
Confidence 7889999999999999999999999999853 5799999999876 34444 477889999999
Q ss_pred cCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCC--CCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccc
Q 039412 241 LPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPR--RSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSG 315 (433)
Q Consensus 241 l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~--~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSG 315 (433)
|.+. ....|.|+|||+| +.++++|+|+..++. ...+|.|++++|+++++.+..+.. .....++||||
T Consensus 115 l~~~--~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiDSG 186 (295)
T cd05474 115 LNDL--DASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPALLDSG 186 (295)
T ss_pred eCCC--CCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccEEECCC
Confidence 9884 3457999999998 568999999988542 237899999999999987653211 24579999999
Q ss_pred cceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecC---CCeEEE-E
Q 039412 316 TVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTA---GSITCL-A 391 (433)
Q Consensus 316 t~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~---~~~~C~-~ 391 (433)
|++++||.+++++|.+++.+.... .....+.+|+.. .. |+|+|+|+|.+++||+++|+++... ....|+ +
T Consensus 187 t~~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~C~~~-~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~ 260 (295)
T cd05474 187 TTLTYLPSDIVDAIAKQLGATYDS----DEGLYVVDCDAK-DD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLG 260 (295)
T ss_pred CccEeCCHHHHHHHHHHhCCEEcC----CCcEEEEeCCCC-CC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEE
Confidence 999999999999988887654321 122233999987 55 9999999999999999999987642 356895 6
Q ss_pred EEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 392 MAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 392 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
+++... +.||||++|||++|++||.+++|||||++
T Consensus 261 i~~~~~----~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 261 IQPSTS----DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEeCCC----CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 776543 36999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=4.9e-45 Score=347.41 Aligned_cols=264 Identities=31% Similarity=0.552 Sum_probs=221.1
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCC---C--CCCCCCCccccccCCCcccCCCCCCCCCCCCceeEE
Q 039412 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSST---V--FNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNL 171 (433)
Q Consensus 97 Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~---~--y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 171 (433)
|+++|.||||+|+++|+|||||+++||+|..|..|..+ . |++..|+++... .|.|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------~~~~~~ 62 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------GCTFSI 62 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------CCEEEE
Confidence 78999999999999999999999999999999987433 2 677777777654 799999
Q ss_pred ecCCCceEEeEEEEEEEecCcccCceEEEeeeccCCC--CCCCCeEeecCCCC------Cchhhh---hccccCCceEEe
Q 039412 172 TYGSSTIAANLSQDTISLATDIVPGYTFGCIQKATGN--SVPPQGLLGLGRGS------LSLLAQ---TQNLYQSTFSYC 240 (433)
Q Consensus 172 ~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~GilGLg~~~------~s~~~q---~~~i~~~~Fs~~ 240 (433)
.|+++.+.|.+++|+|+|++..++++.|||++...+. ....+||||||+.. .+++.| ++.|.+++||+|
T Consensus 63 ~Y~~g~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~ 142 (283)
T cd05471 63 TYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFY 142 (283)
T ss_pred EECCCeEEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEE
Confidence 9999999999999999999999999999999998752 45789999999988 566665 466889999999
Q ss_pred cCCCCCCCCcceEEecCCC---CCCCeeeeeCccCCCCCcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccc
Q 039412 241 LPSFKALSFSGSLRLGPIG---QPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTV 317 (433)
Q Consensus 241 l~~~~~~~~~G~l~fGg~d---~~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~ 317 (433)
|.+.......|.|+|||+| +.+++.|+|+... ...+|.|.+++|+|++...... .....++|||||+
T Consensus 143 l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiDsGt~ 212 (283)
T cd05471 143 LGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISS--------SGGGGAIVDSGTS 212 (283)
T ss_pred EcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeec--------CCCcEEEEecCCC
Confidence 9984213568999999999 4699999999885 2579999999999999751111 2357999999999
Q ss_pred eeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCeEEEEEEecCC
Q 039412 318 FTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPD 397 (433)
Q Consensus 318 ~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~ 397 (433)
+++||++++++|++++.+.... ........|... ..+|+|+|+|
T Consensus 213 ~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~-~~~p~i~f~f------------------------------- 256 (283)
T cd05471 213 LIYLPSSVYDAILKALGAAVSS----SDGGYGVDCSPC-DTLPDITFTF------------------------------- 256 (283)
T ss_pred CEeCCHHHHHHHHHHhCCcccc----cCCcEEEeCccc-CcCCCEEEEE-------------------------------
Confidence 9999999999988887655432 112222667666 7899999999
Q ss_pred CCCCceeEechhhhceeEEEEECCCCEEEEec
Q 039412 398 NVNSVLNVIANMQQQNHRILYDVPNSRLGVAR 429 (433)
Q Consensus 398 ~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 429 (433)
.+|||++|||++|++||++++|||||+
T Consensus 257 -----~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 399999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.5e-30 Score=226.27 Aligned_cols=153 Identities=37% Similarity=0.762 Sum_probs=126.7
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCC-CCCCCCCccccccCCCcccCCCCCC--CCC--CCCceeEE
Q 039412 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTV-FNSAQSTTFKNLGCQAAQCKQVPNP--TCG--GGACAFNL 171 (433)
Q Consensus 97 Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~~--~C~--~~~~~~~~ 171 (433)
|+++|.||||+|++.|+|||||+++|++| ..+ |+|++|+||+.++|.++.|...... .|. +..|.|.+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~ 73 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQ 73 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-----------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccccee
Confidence 89999999999999999999999999998 236 9999999999999999999877542 332 77899999
Q ss_pred ecCC-CceEEeEEEEEEEecC-----cccCceEEEeeeccCCCCCCCCeEeecCCCCCchhhhhccccCCceEEecCCCC
Q 039412 172 TYGS-STIAANLSQDTISLAT-----DIVPGYTFGCIQKATGNSVPPQGLLGLGRGSLSLLAQTQNLYQSTFSYCLPSFK 245 (433)
Q Consensus 172 ~Y~~-g~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~GilGLg~~~~s~~~q~~~i~~~~Fs~~l~~~~ 245 (433)
.|++ ..+.|.+++|+|+++. ..+.++.|||+....+.+...+||||||+.+.|+++|+.....++|||||++ .
T Consensus 74 ~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~-~ 152 (164)
T PF14543_consen 74 SYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS-S 152 (164)
T ss_dssp EETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S--
T ss_pred ecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC-C
Confidence 9998 5677999999999975 4577899999999998888999999999999999999866688999999998 3
Q ss_pred CCCCcceEEecC
Q 039412 246 ALSFSGSLRLGP 257 (433)
Q Consensus 246 ~~~~~G~l~fGg 257 (433)
+....|.|+||+
T Consensus 153 ~~~~~g~l~fG~ 164 (164)
T PF14543_consen 153 SPSSSGFLSFGD 164 (164)
T ss_dssp SSSSEEEEEECS
T ss_pred CCCCCEEEEeCc
Confidence 456789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=1.9e-25 Score=194.21 Aligned_cols=149 Identities=38% Similarity=0.710 Sum_probs=118.6
Q ss_pred ceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCc---cccCCCCccCCCC
Q 039412 278 LYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNL---TVTSLGGFDTCYS 354 (433)
Q Consensus 278 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~C~~ 354 (433)
+|.|+|.+|+||++++.+++..|+. +++...++|||||++++||+++|++|+++|.+++.... .......+..|++
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999998877 67789999999999999999999999999999988762 1234556689998
Q ss_pred CC--------CCCceEEEEEe-CcEEEeCCCCeEEEecCCCeEEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEE
Q 039412 355 VP--------IVAPTITLMFS-GMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRL 425 (433)
Q Consensus 355 ~~--------~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~ri 425 (433)
.. ..+|+|+|+|. |.+++|++++|+++..+ +..|+++.+... ...+..|||+.+|++++++||++++||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~-~~~Cla~~~~~~-~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP-GVFCLAFVPSDA-DDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT-TEEEESEEEETS-TTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccC-CCEEEEEEccCC-CCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 74 37899999999 57999999999998875 689999998811 112579999999999999999999999
Q ss_pred EEec
Q 039412 426 GVAR 429 (433)
Q Consensus 426 Gfa~ 429 (433)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=1e-23 Score=171.16 Aligned_cols=102 Identities=34% Similarity=0.705 Sum_probs=91.9
Q ss_pred EEEEeCCCCceEEEEEecCCCceeeeCCCCCCCC--CCC-C-CCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecC
Q 039412 99 VRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCS--STV-F-NSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG 174 (433)
Q Consensus 99 ~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~--~~~-y-~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~ 174 (433)
++|.||||+|+++|+|||||+++||+|..|..|. .++ | +|++|++++.. .|.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~------------------~~~~~~~Y~ 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN------------------GCTFSITYG 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC------------------CcEEEEEeC
Confidence 4799999999999999999999999999998773 334 6 99999999886 699999999
Q ss_pred CCceEEeEEEEEEEecCcccCceEEEeeeccCCCC---CCCCeEeec
Q 039412 175 SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNS---VPPQGLLGL 218 (433)
Q Consensus 175 ~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~---~~~~GilGL 218 (433)
+|++.|.+++|+|+|++..++++.|||++...+.+ ...+|||||
T Consensus 63 ~g~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCeEEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 99899999999999999999999999999987652 478999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.14 E-value=7.8e-06 Score=63.92 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=65.1
Q ss_pred cEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecCC
Q 039412 96 TYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGS 175 (433)
Q Consensus 96 ~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~~ 175 (433)
.|++++.|+ +++++++||||++.+|+.......+. . ... ......+..++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---~------~~~-------------------~~~~~~~~~~~ 51 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---L------PLT-------------------LGGKVTVQTAN 51 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---C------Ccc-------------------CCCcEEEEecC
Confidence 589999999 89999999999999999754211110 0 000 02445566666
Q ss_pred CceE-EeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeecCC
Q 039412 176 STIA-ANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGR 220 (433)
Q Consensus 176 g~~~-G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGLg~ 220 (433)
|... .....+.+++|+..++++.+........ ..+||||+.+
T Consensus 52 G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 52 GRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CCccceEEEcceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 5543 5555889999999998888888776543 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.27 E-value=0.0015 Score=53.57 Aligned_cols=94 Identities=11% Similarity=0.183 Sum_probs=61.8
Q ss_pred CccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEec
Q 039412 94 SPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTY 173 (433)
Q Consensus 94 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 173 (433)
++.|++++.|. ++++.++||||++.+-+....-... ..++.. . .....+.=
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L---gl~~~~------~------------------~~~~~~~t 59 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL---GLDLNR------L------------------GYTVTVST 59 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc---CCCccc------C------------------CceEEEEe
Confidence 68999999998 8899999999999998864310000 011110 0 11222222
Q ss_pred CCCceE-EeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeecCC
Q 039412 174 GSSTIA-ANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGR 220 (433)
Q Consensus 174 ~~g~~~-G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGLg~ 220 (433)
+.|... ....-|.+++|+..+.|+.+.++.... ..+|+||+.+
T Consensus 60 a~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 60 ANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred CCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc----CCceEcCHHH
Confidence 335544 455789999999999999987775432 2479999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.66 E-value=0.011 Score=45.10 Aligned_cols=88 Identities=13% Similarity=0.223 Sum_probs=53.3
Q ss_pred EEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEEecCCCce
Q 039412 99 VRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYGSSTI 178 (433)
Q Consensus 99 ~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y~~g~~ 178 (433)
+++.|+ .+++++++|||++.+.+....+.... ..+... .....+.-.++..
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~---~~~~~~------------------------~~~~~~~~~~g~~ 51 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG---LKPRPK------------------------SVPISVSGAGGSV 51 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC---CCCcCC------------------------ceeEEEEeCCCCE
Confidence 367787 78999999999998887643211100 000000 1122232223333
Q ss_pred -EEeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeecC
Q 039412 179 -AANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLG 219 (433)
Q Consensus 179 -~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGLg 219 (433)
......+.+++|+..+.++.|-..... ...+||||+-
T Consensus 52 ~~~~~~~~~i~ig~~~~~~~~~~v~~~~----~~~~~iLG~d 89 (90)
T PF13650_consen 52 TVYRGRVDSITIGGITLKNVPFLVVDLG----DPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEECCEEEEeEEEEEECCC----CCCEEEeCCc
Confidence 355566689999988888887777622 2678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.12 E-value=0.035 Score=45.64 Aligned_cols=91 Identities=13% Similarity=0.250 Sum_probs=58.8
Q ss_pred CccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeE-Ee
Q 039412 94 SPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFN-LT 172 (433)
Q Consensus 94 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~-~~ 172 (433)
...+++++.|+ +++++++||||++.+++....+..+.-. +.. ...+. ..
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~---~~~-------------------------~~~~~~~~ 63 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLM---RLI-------------------------DKRFQGIA 63 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCc---ccc-------------------------CcceEEEE
Confidence 45789999999 8999999999999999865432211100 000 11222 12
Q ss_pred cCC--CceEEeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeecCC
Q 039412 173 YGS--STIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGLGR 220 (433)
Q Consensus 173 Y~~--g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGLg~ 220 (433)
.+. ....|....+.+.+++...+ ..|.+.... ..|+|||+-+
T Consensus 64 ~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 64 KGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred ecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC-----CcCEEecHHH
Confidence 222 23457777888999998765 677655433 5799999864
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.96 E-value=0.025 Score=46.51 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.7
Q ss_pred eeEechhhhceeEEEEECCCCEEEE
Q 039412 403 LNVIANMQQQNHRILYDVPNSRLGV 427 (433)
Q Consensus 403 ~~ilG~~fl~~~y~vfD~~~~riGf 427 (433)
..|||..||+.+-.+.|+.+++|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4899999999999999999998853
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.08 E-value=0.54 Score=45.34 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=57.6
Q ss_pred EEEEEEeCCCC----ceE-EEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCceeEE
Q 039412 97 YIVRAKIGTPA----QTL-LMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNL 171 (433)
Q Consensus 97 Y~~~i~iGtP~----q~~-~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 171 (433)
=++.|+|=.|+ |++ +|+|||||.-+=|....- .++-...++-... ...+-.+| .
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl-----------~~~l~~~Lp~~t~--~g~~laEC--------~ 82 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASAL-----------PSSLAGSLPQQTG--GGAPLAEC--------A 82 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhh-----------chhhhccCCcccC--CCcchhhh--------h
Confidence 35667765553 445 899999999887765421 0111111110000 00000111 3
Q ss_pred ecCCCceEEeEEEEEEEecCcccCceEEEeeecc-----------CCC------CCCCCeEeecCCC
Q 039412 172 TYGSSTIAANLSQDTISLATDIVPGYTFGCIQKA-----------TGN------SVPPQGLLGLGRG 221 (433)
Q Consensus 172 ~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~-----------~~~------~~~~~GilGLg~~ 221 (433)
.|++|..-|-+.+-.|+|++....++.+-++.+. .+. ....+||||+|.-
T Consensus 83 ~F~sgytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGYTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCcccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 5777777799999999999865444444444331 010 2378999999864
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=95.06 E-value=0.1 Score=40.26 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCceEEEEEecCCCceeeeCC
Q 039412 97 YIVRAKIGTPAQTLLMAMDTSNDAAWVPCT 126 (433)
Q Consensus 97 Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~ 126 (433)
|++++.|+ ++++++++||||+..++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 89999999999999999754
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.70 E-value=0.08 Score=44.21 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=55.6
Q ss_pred CceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCe
Q 039412 308 AGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSI 387 (433)
Q Consensus 308 ~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~ 387 (433)
..++||||++-.++..+...++.-.+.. +.........+.-..|. ...+.+.+.++|..+... ++
T Consensus 33 ~~vLiDSGAThsFIs~~~a~~~~l~~~~-l~~~~~V~~~g~~~~~~---~~~~~~~~~i~g~~~~~d---l~-------- 97 (135)
T PF08284_consen 33 ASVLIDSGATHSFISSSFAKKLGLPLEP-LPRPIVVSAPGGSINCE---GVCPDVPLSIQGHEFVVD---LL-------- 97 (135)
T ss_pred EEEEEecCCCcEEccHHHHHhcCCEEEE-ccCeeEEeccccccccc---ceeeeEEEEECCeEEEee---eE--------
Confidence 3789999999999998876662210000 00000000111112222 223445555555433211 11
Q ss_pred EEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 388 TCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 388 ~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
+.+... -..|||..||+.+...-|..+++|-|...
T Consensus 98 ----vl~l~~----~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 98 ----VLDLGG----YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ----Eecccc----eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 111111 13999999999999999999999999753
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=93.46 E-value=0.55 Score=41.45 Aligned_cols=88 Identities=8% Similarity=0.103 Sum_probs=59.3
Q ss_pred eeeecccCccccCCccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCC-CCCCCCCccccccCCCcccCCCCC
Q 039412 81 SVVPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTV-FNSAQSTTFKNLGCQAAQCKQVPN 159 (433)
Q Consensus 81 ~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~-y~~~~Sst~~~~~c~~~~C~~~~~ 159 (433)
.++-+..+ .++.|.++..|- +|++..+||||-+.+-+....-. .- ||....
T Consensus 94 ~~v~Lak~----~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~----RlGid~~~l------------------ 145 (215)
T COG3577 94 QEVSLAKS----RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR----RLGIDLNSL------------------ 145 (215)
T ss_pred eEEEEEec----CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH----HhCCCcccc------------------
Confidence 34555543 489999999999 99999999999999888654210 01 443321
Q ss_pred CCCCCCCceeEEecCCCceE-EeEEEEEEEecCcccCceEEEee
Q 039412 160 PTCGGGACAFNLTYGSSTIA-ANLSQDTISLATDIVPGYTFGCI 202 (433)
Q Consensus 160 ~~C~~~~~~~~~~Y~~g~~~-G~~~~D~v~ig~~~~~~~~fg~~ 202 (433)
+.++.+.-..|... ..+-.|.|.||+..+.++.=-++
T Consensus 146 ------~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 146 ------DYTITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ------CCceEEEccCCccccceEEeeeEEEccEEEcCchhhee
Confidence 23444444557666 55778999999987776554333
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.11 E-value=0.91 Score=34.50 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=21.6
Q ss_pred EEEeCCCCceEEEEEecCCCceeeeCCC
Q 039412 100 RAKIGTPAQTLLMAMDTSNDAAWVPCTG 127 (433)
Q Consensus 100 ~i~iGtP~q~~~v~vDTGSs~~wv~~~~ 127 (433)
.+.|. ++++++++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 899999999999999997653
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.89 E-value=0.43 Score=34.95 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCccEEEEEEeCCCCceEEEEEecCCCceeeeCCC
Q 039412 93 QSPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTG 127 (433)
Q Consensus 93 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~ 127 (433)
..+.+++++.|| ++.+.+++|||++...|+...
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESL 37 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHH
Confidence 367899999999 799999999999999887653
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=89.80 E-value=0.76 Score=39.04 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=19.8
Q ss_pred CCceEEccccceeeechHHHHHH
Q 039412 307 GAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 307 ~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
...++||||++....-.++.+.|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 35799999999999999988884
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.48 E-value=2.6 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.3
Q ss_pred eeEechhhhceeEEEEECCCCEE
Q 039412 403 LNVIANMQQQNHRILYDVPNSRL 425 (433)
Q Consensus 403 ~~ilG~~fl~~~y~vfD~~~~ri 425 (433)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 48999999999999999988753
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.83 E-value=1.3 Score=36.10 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.4
Q ss_pred CcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHH
Q 039412 276 SSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
.++|.++ ++|||+.+ .++||||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4566544 67888754 789999999999999988773
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=86.41 E-value=0.99 Score=35.17 Aligned_cols=28 Identities=18% Similarity=0.308 Sum_probs=24.1
Q ss_pred EEEEEeCCCCceEEEEEecCCCceeeeCCC
Q 039412 98 IVRAKIGTPAQTLLMAMDTSNDAAWVPCTG 127 (433)
Q Consensus 98 ~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~ 127 (433)
+.+|.|. ++++++++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5788888 889999999999999887653
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.76 E-value=1.4 Score=33.16 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=19.1
Q ss_pred ceEEccccceeeechHHHHHH
Q 039412 309 GTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 309 ~~iiDSGt~~~~lp~~~~~~l 329 (433)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 789999999999999988874
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.39 E-value=2.7 Score=32.18 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=25.6
Q ss_pred EEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHH
Q 039412 285 AIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
.+.|+|+.+ .+.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i---------------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL---------------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE---------------EEEEcCCcceEEeCHHHHHHh
Confidence 367888876 689999999999999998873
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.30 E-value=2.6 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHH
Q 039412 286 IRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
+.|++..+ .+++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~---------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV---------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE---------------EEEEeCCCcceecCHHHHHHh
Confidence 67788665 699999999999999998884
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.88 E-value=3 Score=31.84 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.7
Q ss_pred EEEeCCCCceEEEEEecCCCceeeeCC
Q 039412 100 RAKIGTPAQTLLMAMDTSNDAAWVPCT 126 (433)
Q Consensus 100 ~i~iGtP~q~~~v~vDTGSs~~wv~~~ 126 (433)
++.|+ +|.+++++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999754
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.14 E-value=4.3 Score=30.82 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.6
Q ss_pred ceEEccccceeeechHHHHHH
Q 039412 309 GTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 309 ~~iiDSGt~~~~lp~~~~~~l 329 (433)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 789999999999999887764
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=77.00 E-value=5.9 Score=32.40 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=49.5
Q ss_pred CccEEEEEEeCCCCceEEEEEecCCCceeeeCCCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCcee-EEe
Q 039412 94 SPTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAF-NLT 172 (433)
Q Consensus 94 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~~C~~C~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~C~~~~~~~-~~~ 172 (433)
....|++++|+ +++++++||||...+-+...-+..|.-.. -+ ...+ .+.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~gL~~----------li------------------d~r~~g~a 71 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCGLMR----------LI------------------DKRFAGVA 71 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTTGGG----------GE------------------EGGG-EE-
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcCChh----------hc------------------cccccccc
Confidence 45678999999 89999999999998888654222342111 00 1111 223
Q ss_pred cCC--CceEEeEEEEEEEecCcccCceEEEeeeccCCCCCCCCeEeec
Q 039412 173 YGS--STIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQGLLGL 218 (433)
Q Consensus 173 Y~~--g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~GilGL 218 (433)
+|- ..+.|.+..=.+.+|+..++ ..|-+..+. ..+=+|||
T Consensus 72 ~GvG~~~i~G~Ih~~~l~ig~~~~~-~s~~Vle~~-----~~d~llGl 113 (124)
T PF09668_consen 72 KGVGTQKILGRIHSVQLKIGGLFFP-CSFTVLEDQ-----DVDLLLGL 113 (124)
T ss_dssp ------EEEEEEEEEEEEETTEEEE-EEEEEETTS-----SSSEEEEH
T ss_pred cCCCcCceeEEEEEEEEEECCEEEE-EEEEEeCCC-----CcceeeeH
Confidence 333 34668888888999886554 555544432 34557776
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.05 E-value=4.3 Score=30.74 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.0
Q ss_pred ceEEccccceeeechHHHHHH
Q 039412 309 GTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 309 ~~iiDSGt~~~~lp~~~~~~l 329 (433)
.+++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 689999999999999988774
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=72.29 E-value=8.9 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=24.2
Q ss_pred EEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHH
Q 039412 285 AIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 329 (433)
.+++||+.+ .|+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~v---------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV---------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE---------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE---------------EEEEeCCCCccccCHHHHHHc
Confidence 477888876 799999999999999998883
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=64.66 E-value=6.2 Score=30.53 Aligned_cols=27 Identities=7% Similarity=0.406 Sum_probs=22.1
Q ss_pred EEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHH
Q 039412 285 AIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAY 326 (433)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~ 326 (433)
.|.++|+.+ .++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i---------------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI---------------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE---------------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE---------------EEEEecCCCcceeccccc
Confidence 467788765 799999999999998653
No 51
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=64.14 E-value=12 Score=33.25 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=18.6
Q ss_pred eeEechhhhceeEEEEECCCCEEEEe
Q 039412 403 LNVIANMQQQNHRILYDVPNSRLGVA 428 (433)
Q Consensus 403 ~~ilG~~fl~~~y~vfD~~~~riGfa 428 (433)
..|||+.|+|.|+=-...+ .+|-|-
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEE
Confidence 4999999999887666654 456664
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=61.51 E-value=11 Score=32.27 Aligned_cols=29 Identities=3% Similarity=0.214 Sum_probs=23.7
Q ss_pred EEEEEeCCCCceEEEEEecCCCceeeeCC
Q 039412 98 IVRAKIGTPAQTLLMAMDTSNDAAWVPCT 126 (433)
Q Consensus 98 ~~~i~iGtP~q~~~v~vDTGSs~~wv~~~ 126 (433)
...+.++.-..+++++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45566666699999999999999988754
No 53
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=59.76 E-value=31 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.5
Q ss_pred CCCCceEEccccceeeechHHHHH
Q 039412 305 TTGAGTIIDSGTVFTRLVAPAYTA 328 (433)
Q Consensus 305 ~~~~~~iiDSGt~~~~lp~~~~~~ 328 (433)
+.+...+||||+....+|....+.
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~~ 30 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTKK 30 (89)
T ss_pred CCCcEEEEeCCCceEeeccccccc
Confidence 456789999999999999866543
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=57.21 E-value=13 Score=28.59 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.5
Q ss_pred CceEEccccceeeechHHHHHH
Q 039412 308 AGTIIDSGTVFTRLVAPAYTAV 329 (433)
Q Consensus 308 ~~~iiDSGt~~~~lp~~~~~~l 329 (433)
..+.+|||++...+|...++.+
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhh
Confidence 4789999999999999988884
No 55
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=57.04 E-value=25 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=28.5
Q ss_pred CcceEEEeeEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHH
Q 039412 276 SSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTA 328 (433)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~ 328 (433)
.++|.+ ...|||+.+ ..++|||.|.+.++++...+
T Consensus 103 ~GHF~a---~~~VNGk~v---------------~fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEA---NGRVNGKKV---------------DFLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEE---EEEECCEEE---------------EEEEecCcceeecCHHHHHH
Confidence 455554 378899887 68999999999999988777
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.02 E-value=15 Score=29.87 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=47.5
Q ss_pred ceEEccccc-eeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeCcEEEeCCCCeEEEecCCCe
Q 039412 309 GTIIDSGTV-FTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSGMNVTLPQDNLLIHSTAGSI 387 (433)
Q Consensus 309 ~~iiDSGt~-~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~ 387 (433)
..+||||-+ ++.+|+++++++ +.. .....--|- ...-.+.+.+.-+.+.+....+...
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~--------~~~----~~~~~~~~~---a~~~~v~t~V~~~~iki~g~e~~~~------ 86 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL--------GLP----LFSTIRIVL---ADGGVVKTSVALATIKIDGVEKVAF------ 86 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc--------CCC----ccCChhhhh---hcCCEEEEEEEEEEEEECCEEEEEE------
Confidence 448999988 999999999983 211 111111111 1111222222223344433333321
Q ss_pred EEEEEEecCCCCCCceeEechhhhceeEEEEECCCCEE
Q 039412 388 TCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRL 425 (433)
Q Consensus 388 ~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~ri 425 (433)
+..+... +..++|...|+..-.++|....++
T Consensus 87 ----Vl~s~~~---~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 87 ----VLASDNL---PEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred ----EEccCCC---cccchhhhhhhhccEEEcCCcceE
Confidence 1222222 235889999999988888876654
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=41.14 E-value=98 Score=30.07 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=60.9
Q ss_pred eEEEECCEEeecCCCCcccCCCCCCceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEE
Q 039412 284 LAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTIT 363 (433)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~ 363 (433)
-+++++|..+ .|.||||+-++.+-..-.++.- +.+.+........ ..+| +
T Consensus 238 iN~~ing~~V---------------KAfVDsGaq~timS~~Caer~g--L~rlid~r~~g~a-----------~gvg--~ 287 (380)
T KOG0012|consen 238 INCEINGVPV---------------KAFVDSGAQTTIMSAACAERCG--LNRLIDKRFQGEA-----------RGVG--T 287 (380)
T ss_pred EEEEECCEEE---------------EEEEcccchhhhhhHHHHHHhC--hHHHhhhhhhccc-----------cCCC--c
Confidence 3467788776 7899999999988877666532 2222221100000 1112 2
Q ss_pred EEEeCc--EEEeCCCCeEEEecCCCeEE-EEEEecCCCCCCceeEechhhhceeEEEEECCCCEEEEecC
Q 039412 364 LMFSGM--NVTLPQDNLLIHSTAGSITC-LAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARE 430 (433)
Q Consensus 364 f~f~g~--~~~l~~~~y~~~~~~~~~~C-~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 430 (433)
..+-|. ...|.-++.- ..| +.++...+- ...||...||.+--.-|++++++-|+..
T Consensus 288 ~ki~g~Ih~~~lki~~~~-------l~c~ftV~d~~~~----d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 288 EKILGRIHQAQLKIEDLY-------LPCSFTVLDRRDM----DLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccccceeEEEEEEeccEe-------eccceEEecCCCc----chhhhHHHHHhccceeecccCeEEecCC
Confidence 222231 1222222211 247 345544332 4899999999999999999999887643
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=37.67 E-value=42 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=19.6
Q ss_pred EEEEeCCCCc----eEEEEEecCCCcee-ee
Q 039412 99 VRAKIGTPAQ----TLLMAMDTSNDAAW-VP 124 (433)
Q Consensus 99 ~~i~iGtP~q----~~~v~vDTGSs~~w-v~ 124 (433)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 5788888732 67999999998764 44
No 59
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.62 E-value=21 Score=27.75 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=8.4
Q ss_pred CCchhhHHHHHHH
Q 039412 1 MKPQLVFFLAFLF 13 (433)
Q Consensus 1 m~~~~~~~l~~~~ 13 (433)
|++..+++|+++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 7777666666553
No 60
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=36.20 E-value=28 Score=26.74 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEeCCCC-ceEEEEEecCCCceeeeC
Q 039412 101 AKIGTPA-QTLLMAMDTSNDAAWVPC 125 (433)
Q Consensus 101 i~iGtP~-q~~~v~vDTGSs~~wv~~ 125 (433)
+.|. + +++++.+|||++..-++-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4455 5 899999999999887764
No 61
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=34.21 E-value=25 Score=27.47 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.3
Q ss_pred CceEEccccceeeechHHH
Q 039412 308 AGTIIDSGTVFTRLVAPAY 326 (433)
Q Consensus 308 ~~~iiDSGt~~~~lp~~~~ 326 (433)
..++||||++.++++..-.
T Consensus 12 ~~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 12 FNVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEEEeCCCCCEEEeCCCC
Confidence 5799999999999997643
No 62
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.31 E-value=99 Score=25.61 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=24.9
Q ss_pred ccEEEEEEeCCCCceEEEEEecCCCceeeeCC
Q 039412 95 PTYIVRAKIGTPAQTLLMAMDTSNDAAWVPCT 126 (433)
Q Consensus 95 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~wv~~~ 126 (433)
..-.+.+.|. .++..+++|+|++..+|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 4567788888 69999999999999988654
No 63
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=24.71 E-value=90 Score=29.88 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=22.2
Q ss_pred ccEEEE---EEeCCC-----CceEEEEEecCCCceeeeCC
Q 039412 95 PTYIVR---AKIGTP-----AQTLLMAMDTSNDAAWVPCT 126 (433)
Q Consensus 95 ~~Y~~~---i~iGtP-----~q~~~v~vDTGSs~~wv~~~ 126 (433)
..|.++ |.||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 345554 577742 23457999999999999853
No 64
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=23.79 E-value=87 Score=29.22 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=23.6
Q ss_pred ccEEEE---EEeCC---CCceEEEEEecCCCceeeeCCC
Q 039412 95 PTYIVR---AKIGT---PAQTLLMAMDTSNDAAWVPCTG 127 (433)
Q Consensus 95 ~~Y~~~---i~iGt---P~q~~~v~vDTGSs~~wv~~~~ 127 (433)
..|.++ |.||. +.....++||||++.+.++...
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~ 195 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQA 195 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCcc
Confidence 456655 57873 2234579999999999998653
No 65
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.50 E-value=76 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=16.1
Q ss_pred EEEeCCCCceEEEEEecCCCceee
Q 039412 100 RAKIGTPAQTLLMAMDTSNDAAWV 123 (433)
Q Consensus 100 ~i~iGtP~q~~~v~vDTGSs~~wv 123 (433)
++.++ +..+.+++|||+...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34555 47889999999876543
No 66
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.63 E-value=81 Score=29.45 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.6
Q ss_pred CceEEccccceeeechHH
Q 039412 308 AGTIIDSGTVFTRLVAPA 325 (433)
Q Consensus 308 ~~~iiDSGt~~~~lp~~~ 325 (433)
..++||||++.+++|..-
T Consensus 14 ~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 14 LNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEEeCCCCceeEeeCC
Confidence 479999999999999763
No 67
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=21.73 E-value=4e+02 Score=20.93 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=48.6
Q ss_pred ceEEccccceeeechHHHHHHHHHHHHHhcCCccccCCCCccCCCCCCCCCceEEEEEeC--cEEEeCCCCeEEEecCCC
Q 039412 309 GTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVPIVAPTITLMFSG--MNVTLPQDNLLIHSTAGS 386 (433)
Q Consensus 309 ~~iiDSGt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~P~i~f~f~g--~~~~l~~~~y~~~~~~~~ 386 (433)
.+.+|||+..+.+.+.-.++.- +.+.+... ...+.- ..+++- -.+-| ....|.-.+.++
T Consensus 11 kAfVDsGaQ~timS~~caercg--L~r~v~~~----r~~g~A------~gvgt~-~kiiGrih~~~ikig~~~~------ 71 (103)
T cd05480 11 RALVDTGCQYNLISAACLDRLG--LKERVLKA----KAEEEA------PSLPTS-VKVIGQIERLVLQLGQLTV------ 71 (103)
T ss_pred EEEEecCCchhhcCHHHHHHcC--hHhhhhhc----cccccc------cCCCcc-eeEeeEEEEEEEEeCCEEe------
Confidence 7899999999999998887743 22222211 000000 111210 11112 122222222222
Q ss_pred eEEE-EEEecCCCCCCceeEechhhhceeEEEEECCC
Q 039412 387 ITCL-AMAAAPDNVNSVLNVIANMQQQNHRILYDVPN 422 (433)
Q Consensus 387 ~~C~-~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~ 422 (433)
.|- .+....+ ...+||.-.||.+-..-|+++
T Consensus 72 -~CSftVld~~~----~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 72 -ECSAQVVDDNE----KNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred -eEEEEEEcCCC----cceEeeHHHHhhcceeeeccC
Confidence 374 3554332 259999999999999988864
No 68
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=20.27 E-value=1.2e+02 Score=18.94 Aligned_cols=6 Identities=33% Similarity=0.141 Sum_probs=4.3
Q ss_pred CCchhh
Q 039412 1 MKPQLV 6 (433)
Q Consensus 1 m~~~~~ 6 (433)
||.+.+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 777766
Done!