BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039413
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 159/386 (41%), Gaps = 53/386 (13%)
Query: 9 HFLLLPFLAPGHMIPMFDTARLLAQRGAIVTIVTTPVNAARF-KTVHARAIDSGLQIRLI 67
H +++P+ GH+ P+F A+LL RG +T V T N R K+ +A D
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 68 EIQ---FPWQQAG-----LPEGCENCD---LLPTTDFARFLNSLHMLQLPFENLFERQTL 116
I P + G +P C++ L P + LN H +P
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLN--HSTNVP---------- 117
Query: 117 KPCCIISDMCFPWTVDTAAKFNVPRIIXXXXXXXXXXXXXXXGVSKVHENVT--SDSDYF 174
C++SD C +T+ A +F +P ++ S V + D Y
Sbjct: 118 PVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFR-SFVERGIIPFKDESYL 176
Query: 175 N----------IPGLP-----DHIQFTKVQLPISEQDDDFKELQEQIFAADKKTYGTIIN 219
IPGL D + F + P + F E+ +++ K ++N
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRV----NKDTTILLN 232
Query: 220 TFEELESPCIEDYKKAKQEKVWCIGPV-SLCNKEPIDKAERGKKASI--DVPECLTWLDS 276
TF ELES I + + ++ IGP+ SL + P +++ + ECL WL+S
Sbjct: 233 TFNELESDVI-NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLES 291
Query: 277 QQPTSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXXNFKE 336
++P SVVYV GS + QL+E GL K F+W+IR F
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR--PDLVIGGSVIFSSEFTN 349
Query: 337 RIKGRGLLIRGWAPQVLILSHPAVGG 362
I RG LI W PQ +L+HP++GG
Sbjct: 350 EIADRG-LIASWCPQDKVLNHPSIGG 374
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 151/393 (38%), Gaps = 69/393 (17%)
Query: 4 EASQSHFLLLPFLAPGHMIPMFDTA-RLLAQRGAIVTIVTT----PVNAARFKTVHARAI 58
E+ H ++P GH+IP+ + A RL+ G VT V P A R +
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQR------TVL 56
Query: 59 DSGLQIRLIEIQFPWQQAGLPEGCENCDLLPTTDFARFLNSLHM--------------LQ 104
DS LP + LP D +S + L+
Sbjct: 57 DS-----------------LPSSISSV-FLPPVDLTDLSSSTRIESRISLTVTRSNPELR 98
Query: 105 LPFENLFERQTLKPCCIISDMCFPWTVDTAAKFNVPRIIXXXXXXXXXXXXXXXGVSKVH 164
F++ E L P ++ D+ D A +F+VP I + K+
Sbjct: 99 KVFDSFVEGGRL-PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLH--LPKLD 155
Query: 165 ENVTSDSDYFNIP-GLPDHIQFTKVQL--PISEQDDDFKELQEQIFAADKKTYGTIINTF 221
E V+ + P LP + P ++ DD + K+ G ++NTF
Sbjct: 156 ETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTF 215
Query: 222 EELESPCIEDYKKAKQEK--VWCIGPVSLCNKEPIDKAERGKKASIDVPECLTWLDSQQP 279
ELE I+ ++ +K V+ +GP+ K+ + E ECL WLD+Q
Sbjct: 216 FELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEES--------ECLKWLDNQPL 267
Query: 280 TSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXX------- 332
SV+YV GS L QL EL LGL S + F+WVIR
Sbjct: 268 GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTF 327
Query: 333 ---NFKERIKGRGLLIRGWAPQVLILSHPAVGG 362
F ER K RG +I WAPQ +L+HP+ GG
Sbjct: 328 LPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGG 360
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 176 IPGLPDHIQFTKVQLPI--SEQDDDFKELQEQIFAADKKTYGTIINTFEELESPCIEDYK 233
IPG+ ++F +Q I + F + ++ K IN+FEEL+ D K
Sbjct: 176 IPGM-SKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK 234
Query: 234 KAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLTWLDSQQPTSVVYVCLGSICNL 293
+K + IGP +L P+ G CL WL ++PTSVVY+ G++
Sbjct: 235 -SKLKTYLNIGPFNLITPPPVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTP 284
Query: 294 PSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXXNFKERIKGRGLLIRGWAPQVL 353
P ++++ L LEAS PF+W +R F E+ +G G+++ WAPQ
Sbjct: 285 PPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVP-WAPQAE 337
Query: 354 ILSHPAVGG 362
+L+H AVG
Sbjct: 338 VLAHEAVGA 346
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 159/383 (41%), Gaps = 53/383 (13%)
Query: 1 MASEASQSHFLLLPFLAPGHMIPMFDTARLLAQ--RGAIVTIVTTPVNAARFKTVHARAI 58
M+ S + +P GH+ + A+LL + +T+ F + +++
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 59 -DSGLQIRLI---EIQFPWQQAGLPEGCENCDLLPTTDFA--RFLNSLHMLQLPFENLFE 112
S QI+LI E++ P Q+ LL + +F FL SL +P
Sbjct: 63 LASQPQIQLIDLPEVEPPPQE-----------LLKSPEFYILTFLESL----IPHVKATI 107
Query: 113 RQTL--KPCCIISDMCFPWTVDTAAKFNVPRIIXXXXXX---XXXXXXXXXGVSKVHENV 167
+ L K ++ D +D +F +P + + +V ++
Sbjct: 108 KTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDS 167
Query: 168 TSDSDYFNIPGLPDHIQFTKVQLPISEQDDDF---KELQEQIFAADKKTYGTIINTFEEL 224
D NIPG+ + + + +D + +L E+ + T G I+NTF +L
Sbjct: 168 DRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERF----RDTKGIIVNTFSDL 223
Query: 225 ESPCIEDYKKAKQE--KVWCIGPVSLCNKEPIDKAERGKKASIDVPECLTWLDSQQPTSV 282
E I+ ++ ++ +GP+ +P K ++ + I L WLD Q SV
Sbjct: 224 EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSV 278
Query: 283 VYVCLGSI-CNLPSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXXNFKE--RIK 339
V++C GS+ + SQ+ E+ LGL+ S F+W F E ++
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELE 331
Query: 340 GRGLLIRGWAPQVLILSHPAVGG 362
G+G+ I GWAPQV +L+H A+GG
Sbjct: 332 GKGM-ICGWAPQVEVLAHKAIGG 353
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 159/383 (41%), Gaps = 53/383 (13%)
Query: 1 MASEASQSHFLLLPFLAPGHMIPMFDTARLLAQ--RGAIVTIVTTPVNAARFKTVHARAI 58
M+ S + +P GH+ + A+LL + +T+ F + +++
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 59 -DSGLQIRLI---EIQFPWQQAGLPEGCENCDLLPTTDFA--RFLNSLHMLQLPFENLFE 112
S QI+LI E++ P Q+ LL + +F FL SL +P
Sbjct: 63 LASQPQIQLIDLPEVEPPPQE-----------LLKSPEFYILTFLESL----IPHVKATI 107
Query: 113 RQTL--KPCCIISDMCFPWTVDTAAKFNVPRIIXXXXXX---XXXXXXXXXGVSKVHENV 167
+ L K ++ D +D +F +P + + +V ++
Sbjct: 108 KTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDS 167
Query: 168 TSDSDYFNIPGLPDHIQFTKVQLPISEQDDDF---KELQEQIFAADKKTYGTIINTFEEL 224
D NIPG+ + + + +D + +L E+ + T G I+NTF +L
Sbjct: 168 DRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERF----RDTKGIIVNTFSDL 223
Query: 225 ESPCIEDYKKAKQE--KVWCIGPVSLCNKEPIDKAERGKKASIDVPECLTWLDSQQPTSV 282
E I+ ++ ++ +GP+ +P K ++ + I L WLD Q SV
Sbjct: 224 EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQPDKSV 278
Query: 283 VYVCLGSI-CNLPSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXXNFKE--RIK 339
V++C GS+ + SQ+ E+ LGL+ S F+W F E ++
Sbjct: 279 VFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELE 331
Query: 340 GRGLLIRGWAPQVLILSHPAVGG 362
G+G+ I GWAPQV +L+H A+GG
Sbjct: 332 GKGM-ICGWAPQVEVLAHKAIGG 353
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 159 GVSKVHENVTSDSDYFNIPGLPDHIQFTKVQLP---ISEQDDDFKELQEQIFAADKKTYG 215
G +VH+ + D +PG P + LP I + D F + ++ +
Sbjct: 166 GSKEVHDVKSIDV----LPGFP---ELKASDLPEGVIKDIDVPFATMLHKMGLELPRANA 218
Query: 216 TIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLTWLD 275
IN+F + P IE+ +K + + +GP +L + E G CL WLD
Sbjct: 219 VAINSFATIH-PLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHG---------CLEWLD 268
Query: 276 SQQPTSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGXXXXXXXXXXXXXXNFK 335
+ +SVVY+ GS+ P +L L LE PF+W RG F
Sbjct: 269 QHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG------DPKEKLPKGFL 322
Query: 336 ERIKGRGLLIRGWAPQVLILSHPAVG 361
ER K +G ++ WAPQV IL H +VG
Sbjct: 323 ERTKTKGKIV-AWAPQVEILKHSSVG 347
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 7 QSHFLLLPFLAPGHMIPMFDTARLLAQRGAIVTIVTTPVNAARFKTVHARAI 58
Q H L GH+ P LA+RG +T VTTP+ A K A +
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVV 55
>pdb|3IT8|A Chain A, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|B Chain B, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|C Chain C, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|G Chain G, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|H Chain H, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|I Chain I, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
Length = 161
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 90 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLL 147
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 148 FAESGQ 153
>pdb|4TSV|A Chain A, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|A Chain A, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|B Chain B, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|C Chain C, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|D Chain D, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|E Chain E, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
pdb|5TSW|F Chain F, High Resolution Crystal Structure Of A Human Tnf-Alpha
Mutant
Length = 150
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 79 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLD 136
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 137 FAESGQ 142
>pdb|1TNF|A Chain A, The Structure Of Tumor Necrosis Factor-Alpha At 2.6
Angstroms Resolution. Implications For Receptor Binding
pdb|1TNF|B Chain B, The Structure Of Tumor Necrosis Factor-Alpha At 2.6
Angstroms Resolution. Implications For Receptor Binding
pdb|1TNF|C Chain C, The Structure Of Tumor Necrosis Factor-Alpha At 2.6
Angstroms Resolution. Implications For Receptor Binding
Length = 157
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 86 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLL 143
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 144 FAESGQ 149
>pdb|2TUN|A Chain A, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
pdb|2TUN|B Chain B, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
pdb|2TUN|C Chain C, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
pdb|2TUN|D Chain D, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
pdb|2TUN|E Chain E, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
pdb|2TUN|F Chain F, Conformational Changes In The (Ala-84-Val) Mutant Of Tumor
Necrosis Factor
Length = 157
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 86 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLL 143
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 144 FAESGQ 149
>pdb|2AZ5|A Chain A, Crystal Structure Of Tnf-Alpha With A Small Molecule
Inhibitor
pdb|2AZ5|B Chain B, Crystal Structure Of Tnf-Alpha With A Small Molecule
Inhibitor
pdb|2AZ5|C Chain C, Crystal Structure Of Tnf-Alpha With A Small Molecule
Inhibitor
pdb|2AZ5|D Chain D, Crystal Structure Of Tnf-Alpha With A Small Molecule
Inhibitor
Length = 148
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 77 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLD 134
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 135 FAESGQ 140
>pdb|3L9J|T Chain T, Selection Of A Novel Highly Specific Tnfalpha Antagonist:
Insight From The Crystal Structure Of The Antagonist-
Tnfalpha Complex
Length = 149
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 78 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLD 135
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 136 FAESGQ 141
>pdb|1A8M|A Chain A, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|B Chain B, Tumor Necrosis Factor Alpha, R31d Mutant
pdb|1A8M|C Chain C, Tumor Necrosis Factor Alpha, R31d Mutant
Length = 157
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 213 TYGTIINTFEELESPCIEDYKKAKQEKVWCIGPVSLCNKEPIDKAERGKKASIDVPECLT 272
+Y T +N ++SPC + + + K W P+ L ++K +R A I+ P+ L
Sbjct: 86 SYQTKVNLLSAIKSPCQRETPEGAEAKPW-YEPIYLGGVFQLEKGDR-LSAEINRPDYLD 143
Query: 273 WLDSQQ 278
+ +S Q
Sbjct: 144 FAESGQ 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,751,758
Number of Sequences: 62578
Number of extensions: 366118
Number of successful extensions: 833
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 20
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)