Query 039417
Match_columns 164
No_of_seqs 96 out of 98
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 6.4E-27 1.4E-31 181.2 5.2 70 27-101 43-113 (118)
2 PF05617 Prolamin_like: Prolam 99.8 5.9E-20 1.3E-24 125.8 3.4 65 31-95 1-70 (70)
3 PLN00214 putative protein; Pro 90.0 0.29 6.3E-06 38.6 2.8 66 6-74 10-78 (115)
4 PHA02650 hypothetical protein; 75.3 4.6 0.0001 30.3 3.7 36 116-152 45-80 (81)
5 PF14798 Ca_hom_mod: Calcium h 58.0 10 0.00022 32.9 2.9 45 114-160 176-220 (251)
6 PRK14710 hypothetical protein; 56.2 5.4 0.00012 29.9 0.8 26 115-140 8-33 (86)
7 PHA03189 UL14 tegument protein 56.1 9.4 0.0002 35.0 2.5 36 52-99 225-260 (348)
8 PF13908 Shisa: Wnt and FGF in 55.8 17 0.00036 28.9 3.6 20 115-134 77-96 (179)
9 PF14368 LTP_2: Probable lipid 54.6 4.4 9.4E-05 28.1 0.1 50 25-79 15-67 (96)
10 PF07172 GRP: Glycine rich pro 51.3 6.9 0.00015 29.3 0.8 12 1-14 1-12 (95)
11 KOG1094 Discoidin domain recep 49.5 30 0.00066 34.8 5.0 26 123-161 397-422 (807)
12 TIGR01732 tiny_TM_bacill conse 48.8 11 0.00025 22.9 1.3 19 120-138 7-25 (26)
13 smart00499 AAI Plant lipid tra 48.3 15 0.00032 23.7 1.9 41 32-76 1-44 (79)
14 PF09680 Tiny_TM_bacill: Prote 47.4 14 0.00029 22.2 1.4 19 120-138 5-23 (24)
15 cd04660 nsLTP_like nsLTP_like: 45.3 11 0.00024 26.0 1.0 37 35-75 4-42 (73)
16 KOG2675 Adenylate cyclase-asso 44.8 16 0.00034 35.0 2.2 28 19-46 94-121 (480)
17 cd01960 nsLTP1 nsLTP1: Non-spe 43.7 17 0.00037 25.6 1.8 35 31-70 2-37 (89)
18 PF02009 Rifin_STEVOR: Rifin/s 39.8 27 0.00059 31.1 2.8 39 31-69 160-208 (299)
19 PHA03054 IMV membrane protein; 39.0 60 0.0013 24.0 4.0 26 116-141 44-69 (72)
20 PHA02819 hypothetical protein; 36.8 67 0.0014 23.6 3.9 27 116-142 42-68 (71)
21 PF05283 MGC-24: Multi-glycosy 35.9 78 0.0017 26.6 4.8 30 112-141 152-182 (186)
22 PHA02692 hypothetical protein; 34.8 70 0.0015 23.4 3.8 26 116-141 41-67 (70)
23 PHA02975 hypothetical protein; 34.6 69 0.0015 23.5 3.7 27 116-142 40-66 (69)
24 PHA02844 putative transmembran 34.5 52 0.0011 24.4 3.1 29 117-145 45-73 (75)
25 TIGR01477 RIFIN variant surfac 31.0 47 0.001 30.6 2.9 24 118-141 311-336 (353)
26 TIGR02736 cbb3_Q_epsi cytochro 30.1 1.2E+02 0.0026 21.4 4.2 38 120-158 3-40 (56)
27 cd00010 AAI_LTSS AAI_LTSS: Alp 30.0 41 0.00089 21.8 1.8 21 50-70 7-28 (63)
28 PTZ00046 rifin; Provisional 29.0 53 0.0012 30.3 2.9 23 119-141 317-341 (358)
29 PF12575 DUF3753: Protein of u 28.0 75 0.0016 23.3 3.0 21 121-141 49-69 (72)
30 PF05568 ASFV_J13L: African sw 26.6 77 0.0017 26.8 3.2 22 116-137 25-46 (189)
31 PF13956 Ibs_toxin: Toxin Ibs, 25.7 44 0.00096 19.0 1.2 11 125-135 5-15 (19)
32 PF14945 LLC1: Normal lung fun 25.0 56 0.0012 26.0 2.0 16 106-121 71-86 (121)
33 PF12036 DUF3522: Protein of u 24.9 83 0.0018 25.7 3.1 30 127-157 123-152 (186)
34 PF10880 DUF2673: Protein of u 23.3 66 0.0014 23.1 2.0 24 1-24 1-28 (65)
35 PRK11486 flagellar biosynthesi 22.2 2.2E+02 0.0049 22.5 4.9 34 111-144 10-43 (124)
36 PF04375 HemX: HemX; InterPro 22.2 2.1E+02 0.0046 25.6 5.4 20 105-124 16-35 (372)
37 PF10577 UPF0560: Uncharacteri 20.9 1.2E+02 0.0027 30.9 3.9 22 125-146 283-305 (807)
38 COG3482 Uncharacterized conser 20.7 45 0.00098 29.3 0.8 104 44-162 60-175 (237)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.93 E-value=6.4e-27 Score=181.23 Aligned_cols=70 Identities=26% Similarity=0.569 Sum_probs=66.7
Q ss_pred CCchhhhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhcccccccccccCCCCCCcccchhhcccccCCCCC
Q 039417 27 LSNPNCWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIRKKCWPNMIDTLGFTAEEGDVLEGYCDHETPAA 101 (164)
Q Consensus 27 ~d~~kCWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~~dCWP~MFps~PFtpee~~lLKgyCs~~~~~~ 101 (164)
+|..||||||++++||+.||.+++++|| ++||++|||||++.+ +|||+| |++|||| ++||++|++++.++
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~~~~ 113 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVAGAT 113 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhcccCCC
Confidence 4999999999999999999999999999 899999999999965 999995 9999999 99999999999877
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.79 E-value=5.9e-20 Score=125.75 Aligned_cols=65 Identities=31% Similarity=0.634 Sum_probs=57.3
Q ss_pred hhhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhcccccccccccCCCCCCcccc----hhhcccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIRKKCWPNMIDTLGFTAEEGD----VLEGYCD 95 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~~dCWP~MFps~PFtpee~~----lLKgyCs 95 (164)
|||++++++++|+.||+.+|++|+ .+||++||+||+.++++|||.|+...|++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 799999999999999999999998 9999999999999999999994444445555558 9999996
No 3
>PLN00214 putative protein; Provisional
Probab=90.01 E-value=0.29 Score=38.58 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhcccccC---CCCCCchhhhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhccccccc
Q 039417 6 KLFVFSFLMASIMGSMAS---ARPLSNPNCWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIRKKCWP 74 (164)
Q Consensus 6 kl~~~~~l~~s~t~~~as---a~~~d~~kCWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~dCWP 74 (164)
.||+.++||+..++..+- ....--..| +.+--+-|..||+..++. ......+||+-+...+.+|--
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~C--~~Kmt~KCa~EI~a~i~~-N~t~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 10 TLFIVVALVCAFVPVFSVEEAEAKSLWNTC--LVKITPKCALDIIAVVFE-NGTLIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHH--HhhccHhhHHHHHHHHHc-CCCCchHHHHHHHHHhhHHHH
Confidence 577777788653222111 112334566 333336799999999992 234488999999999999944
No 4
>PHA02650 hypothetical protein; Provisional
Probab=75.28 E-value=4.6 Score=30.27 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=28.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Q 039417 116 SGMIGYTFIIIIVIVLLIIDLTYLYRCLAPNRNLNYR 152 (164)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (164)
.+.-++.+||+++.+++..=++++|--+.+ ||||-|
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYLK~~~-r~~~~~ 80 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVFKGYT-RNLNGR 80 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCC
Confidence 356678888888888888889999987764 788765
No 5
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=58.01 E-value=10 Score=32.85 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=35.6
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHhhh
Q 039417 114 TNSGMIGYTFIIIIVIVLLIIDLTYLYRCLAPNRNLNYRSWRRLISN 160 (164)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (164)
--|-|+|+++|.++.++.++ .+-+-||..|---+.-+-|...+.+
T Consensus 176 a~SQ~lGW~LI~~~~i~a~l--~~c~~rC~Sp~s~lQ~kyW~~Y~~~ 220 (251)
T PF14798_consen 176 AQSQVLGWILIALVIILAFL--VTCLRRCFSPVSFLQLKYWSIYIEK 220 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35789999998887777776 7888999999877777778776654
No 6
>PRK14710 hypothetical protein; Provisional
Probab=56.18 E-value=5.4 Score=29.87 Aligned_cols=26 Identities=50% Similarity=0.796 Sum_probs=19.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHH
Q 039417 115 NSGMIGYTFIIIIVIVLLIIDLTYLY 140 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
-+.|+-+.|.|||+.+|-.+..-|||
T Consensus 8 ~skm~ififaiii~v~lcv~tylyl~ 33 (86)
T PRK14710 8 LSKMIIFIFAIIIIVVLCVITYLYLY 33 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHhhheeee
Confidence 35788888988888888776544444
No 7
>PHA03189 UL14 tegument protein; Provisional
Probab=56.08 E-value=9.4 Score=35.02 Aligned_cols=36 Identities=28% Similarity=0.654 Sum_probs=26.8
Q ss_pred hCCcccChhhhHHHHhcccccccccccCCCCCCcccchhhcccccCCC
Q 039417 52 NGETYLGDGCCNAIRTIRKKCWPNMIDTLGFTAEEGDVLEGYCDHETP 99 (164)
Q Consensus 52 nGe~~LGp~CCkAI~~I~~dCWP~MFps~PFtpee~~lLKgyCs~~~~ 99 (164)
.|+.+++|.| -..=-+.|||-+-- .+|-|.|.+...
T Consensus 225 ~g~sg~~PsC---pe~epdrCwpvi~q---------y~ldgnC~Rs~~ 260 (348)
T PHA03189 225 PGESGLEPSC---PEEEPDRCWPVIQQ---------YLLDGNCYRSQR 260 (348)
T ss_pred CCccCCCCCC---CccccchhHHHHHH---------hccCCCcccccc
Confidence 5678899999 45556799997622 467889988664
No 8
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=55.81 E-value=17 Score=28.86 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=11.9
Q ss_pred CcccchhHHHHHHHHHHHHH
Q 039417 115 NSGMIGYTFIIIIVIVLLII 134 (164)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~ 134 (164)
..++|++.++++++||++|+
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeeeehhhHHHHHHHhHh
Confidence 45677777665555555444
No 9
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=54.58 E-value=4.4 Score=28.13 Aligned_cols=50 Identities=20% Similarity=0.575 Sum_probs=24.6
Q ss_pred CCCCchhhhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhc---ccccccccccC
Q 039417 25 RPLSNPNCWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTI---RKKCWPNMIDT 79 (164)
Q Consensus 25 ~~~d~~kCWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I---~~dCWP~MFps 79 (164)
.+....+|.+++. .|... ..+.++...-.++||.+++.+ +.+|.=.++..
T Consensus 15 ~~~~~~~c~~~l~---~c~~~--~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~ 67 (96)
T PF14368_consen 15 AAACCCSCANSLL---PCCPC--LCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNS 67 (96)
T ss_dssp ---BTTB-HCCCC---HH--H--HHHHCC-----HHHHHHHCC----HCCHHHCCCC-
T ss_pred CCCCcchhHHHHh---ccccc--hhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCc
Confidence 3455567865544 44222 124567789999999999996 78886655444
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.30 E-value=6.9 Score=29.31 Aligned_cols=12 Identities=50% Similarity=0.589 Sum_probs=6.8
Q ss_pred CCcchhHHHHHHHH
Q 039417 1 MANASKLFVFSFLM 14 (164)
Q Consensus 1 ma~~~kl~~~~~l~ 14 (164)
|| +|.|+|+.|+
T Consensus 1 Ma--SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA--SKAFLLLGLL 12 (95)
T ss_pred Cc--hhHHHHHHHH
Confidence 77 6666554444
No 11
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=49.46 E-value=30 Score=34.76 Aligned_cols=26 Identities=54% Similarity=1.016 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHhhhh
Q 039417 123 FIIIIVIVLLIIDLTYLYRCLAPNRNLNYRSWRRLISNT 161 (164)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (164)
|..|+.||++||- +-||| |||+.+..
T Consensus 397 f~~if~iva~ii~-~~L~R------------~rr~~~ka 422 (807)
T KOG1094|consen 397 FVAIFLIVALIIA-LMLWR------------WRRLLSKA 422 (807)
T ss_pred HHHHHHHHHHHHH-HHHHH------------HHHHHhhh
Confidence 4455666666664 45665 88887744
No 12
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=48.79 E-value=11 Score=22.86 Aligned_cols=19 Identities=26% Similarity=0.889 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039417 120 GYTFIIIIVIVLLIIDLTY 138 (164)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~ 138 (164)
|+.+|+...|+|.||-.+|
T Consensus 7 gf~livVLFILLIIiga~~ 25 (26)
T TIGR01732 7 GFALIVVLFILLVIVGAAF 25 (26)
T ss_pred chHHHHHHHHHHHHhheee
Confidence 6777777778888776554
No 13
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=48.26 E-value=15 Score=23.65 Aligned_cols=41 Identities=22% Similarity=0.545 Sum_probs=26.1
Q ss_pred hhhhhccccccHHHHHHHHHhC--CcccChhhhHHHHhc-cccccccc
Q 039417 32 CWDSLIQIQACSGEIILFFLNG--ETYLGDGCCNAIRTI-RKKCWPNM 76 (164)
Q Consensus 32 CWsSL~~VqGCv~EIi~sflnG--e~~LGp~CCkAI~~I-~~dCWP~M 76 (164)
|...+.++.+|..-+ ..+ +..-..+||.+++.+ ...|.=..
T Consensus 1 C~~~~~~~~~c~~~~----~~~~~~~~p~~~CC~~l~~~~~~~C~C~~ 44 (79)
T smart00499 1 CGQVLLQLAPCLSYL----TGGSPGAPPSQQCCSQLRGLNSAQCRCLA 44 (79)
T ss_pred ChhhhhhHHhhHHHH----cCCCCCCCCchHHHHHHHHhcccCCcchh
Confidence 344455555664332 222 456778999999999 88886543
No 14
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=47.37 E-value=14 Score=22.18 Aligned_cols=19 Identities=26% Similarity=0.824 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039417 120 GYTFIIIIVIVLLIIDLTY 138 (164)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~ 138 (164)
|+.+|++..|+|.|+--+|
T Consensus 5 ~FalivVLFILLiIvG~s~ 23 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGASC 23 (24)
T ss_pred cchhHHHHHHHHHHhccee
Confidence 6788888888887775443
No 15
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=45.26 E-value=11 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=23.0
Q ss_pred hhccccccHHHHHHHHHhCC--cccChhhhHHHHhcccccccc
Q 039417 35 SLIQIQACSGEIILFFLNGE--TYLGDGCCNAIRTIRKKCWPN 75 (164)
Q Consensus 35 SL~~VqGCv~EIi~sflnGe--~~LGp~CCkAI~~I~~dCWP~ 75 (164)
++..+..|.. ++..|. ..-+++||.+++..+..|.=.
T Consensus 4 ~~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~ 42 (73)
T cd04660 4 DLDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCR 42 (73)
T ss_pred CHHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEee
Confidence 3445556633 334444 346788999999877667533
No 16
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=44.76 E-value=16 Score=34.95 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=15.6
Q ss_pred ccccCCCCCCchhhhhhhccccccHHHH
Q 039417 19 GSMASARPLSNPNCWDSLIQIQACSGEI 46 (164)
Q Consensus 19 ~~~asa~~~d~~kCWsSL~~VqGCv~EI 46 (164)
|...+.+++|..+=-..|.-+..=..||
T Consensus 94 ~~A~q~qKPds~elad~LkPI~e~i~eI 121 (480)
T KOG2675|consen 94 WVASQKQKPDSNELADLLKPINEEIGEI 121 (480)
T ss_pred HHHHhccCCChHHHHHHhhhHHHhhhHH
Confidence 4445556667666555666555444444
No 17
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=43.73 E-value=17 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.538 Sum_probs=24.4
Q ss_pred hhhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIRK 70 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~~ 70 (164)
+|=+.+..+..|. . |++|. ..-+++||.+++.+..
T Consensus 2 ~C~~v~~~l~~C~----~-y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 2 SCGQVTSLLAPCL----G-YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred CHHHHHhhHHhHH----H-HHhCCCCCCChHHhhhhHHHhh
Confidence 4656667777783 2 34444 6788999999998653
No 18
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.78 E-value=27 Score=31.07 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=25.2
Q ss_pred hhhhhhcccc--ccHHHHHHHHHhCC--------cccChhhhHHHHhcc
Q 039417 31 NCWDSLIQIQ--ACSGEIILFFLNGE--------TYLGDGCCNAIRTIR 69 (164)
Q Consensus 31 kCWsSL~~Vq--GCv~EIi~sflnGe--------~~LGp~CCkAI~~I~ 69 (164)
++|.++.+.. .+...++..+..-. ...+..+|.++....
T Consensus 160 ~~~~~ii~~~~y~~~~~l~~~i~~~~~~~c~~~~~~~~~~~c~~~~~~~ 208 (299)
T PF02009_consen 160 KILKSIITASNYSNVSTLVGIIYAKYNTMCASSGAGSGSSFCSSSSIGS 208 (299)
T ss_pred hhhhhheecccCCcHHHHHHHHHHHhhccccccccCCCCceeeeecccc
Confidence 6888888775 57788777776511 344556776665543
No 19
>PHA03054 IMV membrane protein; Provisional
Probab=39.02 E-value=60 Score=23.95 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=20.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHH
Q 039417 116 SGMIGYTFIIIIVIVLLIIDLTYLYR 141 (164)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
.|.-.+.+||+++.++++.=++++|-
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888884
No 20
>PHA02819 hypothetical protein; Provisional
Probab=36.79 E-value=67 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=21.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 039417 116 SGMIGYTFIIIIVIVLLIIDLTYLYRC 142 (164)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
.|.-.+++||+++.++++.=++++|--
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888998853
No 21
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=35.85 E-value=78 Score=26.63 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=23.1
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHH-HHH
Q 039417 112 VETNSGMIGYTFIIIIVIVLLIIDLTY-LYR 141 (164)
Q Consensus 112 v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 141 (164)
....++.=|..||.-||++|.++-.-| +|+
T Consensus 152 ~~~~s~FD~~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 152 PPKKSTFDAASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred CCCCCCCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 345688999999999999988776655 343
No 22
>PHA02692 hypothetical protein; Provisional
Probab=34.77 E-value=70 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=18.3
Q ss_pred cccchhHHHHH-HHHHHHHHHHHHHHH
Q 039417 116 SGMIGYTFIII-IVIVLLIIDLTYLYR 141 (164)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 141 (164)
.|.-.++.||+ ++.++++.=++++|-
T Consensus 41 ~~~~~~~~ii~~~~~~~~~vll~flYL 67 (70)
T PHA02692 41 KGVPWTTVFLIGLIAAAIGVLLCFHYL 67 (70)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777 777777777888884
No 23
>PHA02975 hypothetical protein; Provisional
Probab=34.64 E-value=69 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 039417 116 SGMIGYTFIIIIVIVLLIIDLTYLYRC 142 (164)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
.|.-.+.+||+++.++++.=++++|--
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888888888888888998853
No 24
>PHA02844 putative transmembrane protein; Provisional
Probab=34.46 E-value=52 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhCC
Q 039417 117 GMIGYTFIIIIVIVLLIIDLTYLYRCLAP 145 (164)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (164)
|.-.+.+||+++.++++.=++++|--+.+
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 45567888888888888889999966543
No 25
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.95 E-value=47 Score=30.61 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=13.7
Q ss_pred cchhHHHHHHHHHH--HHHHHHHHHH
Q 039417 118 MIGYTFIIIIVIVL--LIIDLTYLYR 141 (164)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~~~~~~~~ 141 (164)
-|++.+|.|+|||| +||=|---||
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555555554 6776655555
No 26
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=30.07 E-value=1.2e+02 Score=21.43 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHh
Q 039417 120 GYTFIIIIVIVLLIIDLTYLYRCLAPNRNLNYRSWRRLI 158 (164)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (164)
||.|+++.+.|+|--=.-.|||--...+ -||...-+|.
T Consensus 3 ~yf~~ti~lvv~LYgY~yhLYrsek~G~-rdYEKY~~LA 40 (56)
T TIGR02736 3 AYFAFTLLLVIFLYAYIYHLYRSQKKGE-RDYEKYANLA 40 (56)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccc-cCHHHHhhhh
Confidence 5666666666666555556788766665 6888777664
No 27
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=30.02 E-value=41 Score=21.84 Aligned_cols=21 Identities=29% Similarity=0.763 Sum_probs=16.3
Q ss_pred HHhCC-cccChhhhHHHHhccc
Q 039417 50 FLNGE-TYLGDGCCNAIRTIRK 70 (164)
Q Consensus 50 flnGe-~~LGp~CCkAI~~I~~ 70 (164)
|++|. ..-.++||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 44555 7788999999999853
No 28
>PTZ00046 rifin; Provisional
Probab=28.96 E-value=53 Score=30.30 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHH--HHHHHHHHHH
Q 039417 119 IGYTFIIIIVIVL--LIIDLTYLYR 141 (164)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~ 141 (164)
|++.+|.|+|||| +||=|---||
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555554 6666555555
No 29
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=27.98 E-value=75 Score=23.34 Aligned_cols=21 Identities=48% Similarity=0.785 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 039417 121 YTFIIIIVIVLLIIDLTYLYR 141 (164)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (164)
+.+||.++++++++=++++|-
T Consensus 49 ~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 49 IILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666788873
No 30
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.63 E-value=77 Score=26.77 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=12.6
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 039417 116 SGMIGYTFIIIIVIVLLIIDLT 137 (164)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (164)
|-.-.+..+|+|-||.+||+.-
T Consensus 25 sffsthm~tILiaIvVliiiii 46 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIII 46 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666654
No 31
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.68 E-value=44 Score=18.99 Aligned_cols=11 Identities=55% Similarity=1.050 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 039417 125 IIIVIVLLIID 135 (164)
Q Consensus 125 ~~~~~~~~~~~ 135 (164)
+||.+|||.|.
T Consensus 5 vIIlvvLLliS 15 (19)
T PF13956_consen 5 VIILVVLLLIS 15 (19)
T ss_pred hHHHHHHHhcc
Confidence 34555666553
No 32
>PF14945 LLC1: Normal lung function maintenance, Low in Lung Cancer 1 protein
Probab=25.02 E-value=56 Score=25.98 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=11.6
Q ss_pred CCCCCCccCCcccchh
Q 039417 106 QPAPIPVETNSGMIGY 121 (164)
Q Consensus 106 ~p~~~pv~~~~~~~~~ 121 (164)
.|+|+-..+|+||||.
T Consensus 71 ~pspPvPkTT~G~IGW 86 (121)
T PF14945_consen 71 LPSPPVPKTTQGFIGW 86 (121)
T ss_pred CCCCCCCcccccceee
Confidence 3455556789999996
No 33
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=24.89 E-value=83 Score=25.68 Aligned_cols=30 Identities=47% Similarity=0.815 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHH
Q 039417 127 IVIVLLIIDLTYLYRCLAPNRNLNYRSWRRL 157 (164)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
|++-++++=..++|||-. .|..+.++|+|-
T Consensus 123 i~~~~~i~~~~w~~r~~~-~~~~~~~~~~~~ 152 (186)
T PF12036_consen 123 ILIGLLILLVSWLYRCRR-RRRCYPPSWRRW 152 (186)
T ss_pred HHHHHHHHHHHHheeccc-CCccCChHHHHH
Confidence 355555666789999955 488888999864
No 34
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=23.28 E-value=66 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=15.4
Q ss_pred CCcchhHHHHHHHH---H-hhcccccCC
Q 039417 1 MANASKLFVFSFLM---A-SIMGSMASA 24 (164)
Q Consensus 1 ma~~~kl~~~~~l~---~-s~t~~~asa 24 (164)
|-+-+|++++++|. | |+++.+.++
T Consensus 1 mknllkillilafa~pvfassmq~p~pa 28 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASSMQMPDPA 28 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhcccCCCCc
Confidence 56778888877765 2 355555443
No 35
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=22.21 E-value=2.2e+02 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=20.1
Q ss_pred CccCCcccchhHHHHHHHHHHHHHHHHHHHHhhC
Q 039417 111 PVETNSGMIGYTFIIIIVIVLLIIDLTYLYRCLA 144 (164)
Q Consensus 111 pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
|+.+..+.+--.+.-.++++++|+=+.||-|-+.
T Consensus 10 ~~~~~~~~l~qv~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 10 SAPVSGSPLLQVSGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333444444444445566667777789988764
No 36
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=22.18 E-value=2.1e+02 Score=25.61 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=10.6
Q ss_pred CCCCCCCccCCcccchhHHH
Q 039417 105 TQPAPIPVETNSGMIGYTFI 124 (164)
Q Consensus 105 ~~p~~~pv~~~~~~~~~~~~ 124 (164)
.+|+|.++.+..|..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~l~~l 35 (372)
T PF04375_consen 16 KPPAPKPARKSSGGSGLALL 35 (372)
T ss_pred CCCCCCCCCCCCcchHHHHH
Confidence 34555556666665554433
No 37
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.89 E-value=1.2e+02 Score=30.91 Aligned_cols=22 Identities=45% Similarity=0.863 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCC
Q 039417 125 IIIVIVLLIIDLTYLYR-CLAPN 146 (164)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-~~~~~ 146 (164)
++||++||-+=|-|-+| |+.|.
T Consensus 283 ~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 283 ALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHHhhhcccCCcc
Confidence 44556666666777777 78775
No 38
>COG3482 Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=45 Score=29.33 Aligned_cols=104 Identities=27% Similarity=0.353 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCcccChhhhHHHHhcccccccc-cccCCCCCCcccchhhcccccCCCCC--CCCCCCCCCCccCCcccch
Q 039417 44 GEIILFFLNGETYLGDGCCNAIRTIRKKCWPN-MIDTLGFTAEEGDVLEGYCDHETPAA--IVHTQPAPIPVETNSGMIG 120 (164)
Q Consensus 44 ~EIi~sflnGe~~LGp~CCkAI~~I~~dCWP~-MFps~PFtpee~~lLKgyCs~~~~~~--~~~~~p~~~pv~~~~~~~~ 120 (164)
-||.-+...|-.-+|.+-=-|++. ..|-|- | -.. |.+-|-|=+...+.. ..++.|.+- |.--
T Consensus 60 kEiL~als~Gv~v~Ga~SMGALRA--aEl~~fgM-~Gv------G~Ifr~Yrdg~e~DddVAV~~gp~~~------g~~P 124 (237)
T COG3482 60 KEILWALSQGVAVVGAASMGALRA--AELDPFGM-VGV------GLIFRWYRDGIESDDDVAVLHGPNED------GYSP 124 (237)
T ss_pred HHHHHHHHcCceEecccchhhhHH--hhcccccc-cch------HHHHHHHHccccCCccccccCCCccc------CCcc
Confidence 477555555668899999999998 457775 4 221 345555555533332 222322221 2111
Q ss_pred hHHHHHHHHHHH--HHHH----HHHHHhhCC-CCCCch--HHHHHHhhhhc
Q 039417 121 YTFIIIIVIVLL--IIDL----TYLYRCLAP-NRNLNY--RSWRRLISNTA 162 (164)
Q Consensus 121 ~~~~~~~~~~~~--~~~~----~~~~~~~~~-~~~~~~--~~~~~~~~~~~ 162 (164)
.|-++.=+.--| ..|. .-+++||+- -||++| |+|||++...+
T Consensus 125 lt~aLVn~r~Tl~~a~~~~~vspel~~~l~saArnl~yr~Rt~rr~v~Ea~ 175 (237)
T COG3482 125 LTDALVNIRATLARALDRGVVSPELSDRLASAARNLFYRERTWRRAVAEAG 175 (237)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCchhHHHHHHHhc
Confidence 222221111111 1111 345666643 367777 69999998755
Done!