Query 039417
Match_columns 164
No_of_seqs 96 out of 98
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9u_A Receptor tyrosine-prote 20.5 1E+02 0.0035 19.4 3.1 21 120-140 9-29 (40)
2 1bwo_A NS-LTP1, nonspecific li 20.0 50 0.0017 22.8 1.9 60 32-96 3-75 (90)
3 1afh_A Maize nonspecific lipid 16.7 62 0.0021 22.4 1.7 61 31-96 3-77 (93)
4 2alg_A Non-specific lipid tran 16.1 55 0.0019 22.6 1.3 61 31-96 3-76 (92)
5 1n89_A Lipid transfer protein; 14.3 98 0.0034 20.2 2.1 31 38-74 6-36 (67)
6 2ljo_A Non-specific lipid-tran 13.1 62 0.0021 22.7 0.9 33 32-69 4-36 (93)
7 1l6h_A LTP2, non-specific lipi 12.8 90 0.0031 20.5 1.6 31 37-73 6-36 (69)
8 2rkn_A DIR1 protein, AT5G48485 12.7 21 0.00071 23.9 -1.7 39 32-74 5-44 (77)
9 1siy_A LTP 1, NS-LTP1, nonspec 12.6 61 0.0021 22.3 0.7 60 32-96 3-75 (91)
10 2ebo_A Ebola virus envelope gl 10.1 66 0.0022 22.6 0.2 9 55-63 46-54 (74)
No 1
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.53 E-value=1e+02 Score=19.38 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 039417 120 GYTFIIIIVIVLLIIDLTYLY 140 (164)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~ 140 (164)
..|.|.-++.+.++..-|+||
T Consensus 9 alt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEE
Confidence 457777788889999999998
No 2
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=19.96 E-value=50 Score=22.81 Aligned_cols=60 Identities=12% Similarity=0.433 Sum_probs=35.1
Q ss_pred hhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhccc------------ccccccccCC-CCCCcccchhhccccc
Q 039417 32 CWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIRK------------KCWPNMIDTL-GFTAEEGDVLEGYCDH 96 (164)
Q Consensus 32 CWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~------------dCWP~MFps~-PFtpee~~lLKgyCs~ 96 (164)
|=+.+.++..|..- ++|.+.-.++||.+++.+.. .|.-....+. +..+.-..-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHH-----HcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 55566667777443 34443388899999998652 4543333333 3455444556666753
No 3
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=16.71 E-value=62 Score=22.43 Aligned_cols=61 Identities=21% Similarity=0.531 Sum_probs=35.1
Q ss_pred hhhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhcc----------c--ccccccccCC-CCCCcccchhhccccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIR----------K--KCWPNMIDTL-GFTAEEGDVLEGYCDH 96 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~----------~--dCWP~MFps~-PFtpee~~lLKgyCs~ 96 (164)
+|=+.+.++..|..- ++|. ..-.++||.+++.+. . .|.-...... +..+.-..-|-+.|.-
T Consensus 3 ~C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 3 SCGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SSHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred ChHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 355566667777433 3444 556779999999985 2 3443222222 3444444556666754
No 4
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=16.09 E-value=55 Score=22.63 Aligned_cols=61 Identities=21% Similarity=0.549 Sum_probs=36.7
Q ss_pred hhhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhcc-------c-----ccccccccCC-CCCCcccchhhccccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIR-------K-----KCWPNMIDTL-GFTAEEGDVLEGYCDH 96 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~-------~-----dCWP~MFps~-PFtpee~~lLKgyCs~ 96 (164)
.|=+.+.++..|..-+ ..| +...++||.+++.+. | .|.-...+.. ++.+.-..-|-+.|.-
T Consensus 3 ~C~~v~~~L~pCl~y~----~~~-~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 3 TCGQVSSSLAPCIPYV----RGG-GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp CHHHHHHHHGGGHHHH----HHC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred ChHHHHHhccCcHHHH----cCC-CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 3656666777785543 333 347789999999875 3 4453333333 4555445566677754
No 5
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=14.28 E-value=98 Score=20.19 Aligned_cols=31 Identities=23% Similarity=0.609 Sum_probs=20.2
Q ss_pred cccccHHHHHHHHHhCCcccChhhhHHHHhccccccc
Q 039417 38 QIQACSGEIILFFLNGETYLGDGCCNAIRTIRKKCWP 74 (164)
Q Consensus 38 ~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~dCWP 74 (164)
++..|...+ +|.+...++||.+++.. ..|.=
T Consensus 6 ~L~pC~~~v-----~~~~~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 6 QLAVCASAI-----LSGAKPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp TTHHHHHHH-----TTCCCCCHHHHHHHHHH-SSHHH
T ss_pred hcccCHHHH-----cCCCCCCHHHHHhhCCC-CCCCC
Confidence 445564443 33356889999999975 66743
No 6
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=13.06 E-value=62 Score=22.74 Aligned_cols=33 Identities=18% Similarity=0.534 Sum_probs=21.5
Q ss_pred hhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhcc
Q 039417 32 CWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIR 69 (164)
Q Consensus 32 CWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~ 69 (164)
|=+.+..+-.|. .++.|.....++||.+++.+.
T Consensus 4 C~~v~~~L~pCl-----~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCL-----TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHH-----HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-----HHHcCCCCCCCchhhHHHHHH
Confidence 444444555562 245666678999999998874
No 7
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=12.75 E-value=90 Score=20.51 Aligned_cols=31 Identities=29% Similarity=0.779 Sum_probs=20.3
Q ss_pred ccccccHHHHHHHHHhCCcccChhhhHHHHhcccccc
Q 039417 37 IQIQACSGEIILFFLNGETYLGDGCCNAIRTIRKKCW 73 (164)
Q Consensus 37 ~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~dCW 73 (164)
.++..|...+ +|.+...++||.+++.. ..|.
T Consensus 6 ~~L~pC~~~v-----~~~~~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 6 GQLTVCTGAI-----AGGARPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp TTHHHHHHHH-----TTCCSTTHHHHHHHHHH-HHHH
T ss_pred hhcccCHHHH-----cCCCCCCHHHHHhhCCC-CCCC
Confidence 3445564443 33356889999999985 6675
No 8
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=12.72 E-value=21 Score=23.90 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=23.3
Q ss_pred hhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhccccccc
Q 039417 32 CWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIRKKCWP 74 (164)
Q Consensus 32 CWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~~dCWP 74 (164)
|=+.+.++..|.. ++..|. ..-.++||.+++..+..|.=
T Consensus 5 C~~~~~~L~pC~~----yv~~~~~~~Ps~~CC~~lk~~~~~ClC 44 (77)
T 2rkn_A 5 CGMSQDELNECKP----AVSKENPTSPSQPCCTALQHADFACLC 44 (77)
T ss_dssp TTBCHHHHHHHGG----GGBSSSCCCCCHHHHHHHTTCCHHHHH
T ss_pred HHhHHHhHhhCHH----HHcCCCCCCCCHHHHHHHHhcCcCCcC
Confidence 4444445555532 223322 66788999999986666643
No 9
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=12.56 E-value=61 Score=22.34 Aligned_cols=60 Identities=20% Similarity=0.497 Sum_probs=32.9
Q ss_pred hhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhcc----------ccc--ccccccCC-CCCCcccchhhccccc
Q 039417 32 CWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIR----------KKC--WPNMIDTL-GFTAEEGDVLEGYCDH 96 (164)
Q Consensus 32 CWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~----------~dC--WP~MFps~-PFtpee~~lLKgyCs~ 96 (164)
|=+.+.++..|..- ++|.+.-.++||.+++.+. ..| .-...... +..+.-..-|=+.|.-
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv 75 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGV 75 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhccCcHHH-----HhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCC
Confidence 44445556667433 3444337889999999873 134 43332333 3444444556666753
No 10
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=10.13 E-value=66 Score=22.58 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=7.6
Q ss_pred cccChhhhH
Q 039417 55 TYLGDGCCN 63 (164)
Q Consensus 55 ~~LGp~CCk 63 (164)
.-+||+||-
T Consensus 46 ~ilgpdc~i 54 (74)
T 2ebo_A 46 HILGPDCAI 54 (74)
T ss_dssp HHHGGGGGC
T ss_pred eecCCcccc
Confidence 579999994
Done!