Query 039417
Match_columns 164
No_of_seqs 96 out of 98
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 16:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mida_ a.52.1.1 (A:) Plant no 32.2 11 0.00081 24.7 2.1 35 31-70 2-36 (91)
2 d1fk5a_ a.52.1.1 (A:) Plant no 28.6 12 0.00087 24.6 1.7 60 31-95 3-76 (93)
3 d1oe4a_ c.18.1.3 (A:) Single-s 7.6 1.2E+02 0.0089 23.4 2.9 36 78-118 70-105 (245)
4 d1k8rb_ d.15.1.5 (B:) Protein 6.6 98 0.0071 20.9 1.6 18 36-53 14-31 (95)
5 d1hssa_ a.52.1.2 (A:) 0.19 alp 5.5 1E+02 0.0074 21.6 1.2 36 38-74 12-50 (120)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.5 1.7E+02 0.013 16.2 1.5 8 7-14 24-31 (34)
7 d1tuka1 a.52.1.1 (A:1-67) Non- 4.4 2.1E+02 0.015 18.0 2.0 35 35-75 3-37 (67)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.8 1.4E+02 0.01 22.5 0.9 19 121-139 28-46 (248)
9 d1wk1a_ d.169.1.1 (A:) Hypothe 3.7 3E+02 0.022 17.5 2.6 25 93-117 126-150 (150)
10 d2apob1 g.41.16.1 (B:403-457) 3.6 3.2E+02 0.024 16.4 2.4 26 90-115 15-40 (55)
No 1
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=32.19 E-value=11 Score=24.68 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=24.7
Q ss_pred hhhhhhccccccHHHHHHHHHhCCcccChhhhHHHHhccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIRK 70 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~ 70 (164)
+|=+.+.++-.|. .|++|.....+.||.+++.+..
T Consensus 2 ~C~~v~~~l~pCl-----~Yl~g~~~P~~~CC~gv~~L~~ 36 (91)
T d1mida_ 2 NCGQVDSKMKPCL-----TYVQGGPGPSGECCNGVRDLHN 36 (91)
T ss_dssp CHHHHHHHHGGGH-----HHHTTCSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhH-----HHHcCCCCCCcchhhhHHHHHH
Confidence 3556666667773 3456777799999999988753
No 2
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=28.64 E-value=12 Score=24.57 Aligned_cols=60 Identities=22% Similarity=0.571 Sum_probs=35.5
Q ss_pred hhhhhhccccccHHHHHHHHHhCC-cccChhhhHHHHhccc------------cccccccc-CCCCCCcccchhhcccc
Q 039417 31 NCWDSLIQIQACSGEIILFFLNGE-TYLGDGCCNAIRTIRK------------KCWPNMID-TLGFTAEEGDVLEGYCD 95 (164)
Q Consensus 31 kCWsSL~~VqGCv~EIi~sflnGe-~~LGp~CCkAI~~I~~------------dCWP~MFp-s~PFtpee~~lLKgyCs 95 (164)
+|=+.+.++-.|. . |++|. ..-+++||.+++.+.+ +|.-.... ..|+.+.-..-|=..|.
T Consensus 3 ~C~~v~~~l~pCl----~-Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~ 76 (93)
T d1fk5a_ 3 SCGQVASAIAPCI----S-YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCG 76 (93)
T ss_dssp CHHHHHHHHGGGH----H-HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHhhhhH----H-HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcC
Confidence 4556666677772 2 45555 5678999999998763 23323222 23455544455666674
No 3
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=7.57 E-value=1.2e+02 Score=23.36 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.1
Q ss_pred cCCCCCCcccchhhcccccCCCCCCCCCCCCCCCccCCccc
Q 039417 78 DTLGFTAEEGDVLEGYCDHETPAAIVHTQPAPIPVETNSGM 118 (164)
Q Consensus 78 ps~PFtpee~~lLKgyCs~~~~~~~~~~~p~~~pv~~~~~~ 118 (164)
+.+||+. ...+|++|.-... ...|+..+|.+|..|.
T Consensus 70 TGVPFgd--~~~vr~~l~I~~~---v~~P~~~HPKRpi~Gl 105 (245)
T d1oe4a_ 70 TGVPFGE--VNHVRDWLQIEGP---VSKPEVEHPKRRIRGF 105 (245)
T ss_dssp HSSTTCC--HHHHHHTTCCCCC---CCCCSSCCTTSCCCGG
T ss_pred cCcCcCC--HHHHHHHhcCCCc---cCCCcccCCCCccccc
Confidence 4788876 5899999977543 3477889999998886
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.64 E-value=98 Score=20.88 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=14.0
Q ss_pred hccccccHHHHHHHHHhC
Q 039417 36 LIQIQACSGEIILFFLNG 53 (164)
Q Consensus 36 L~~VqGCv~EIi~sflnG 53 (164)
..++.||.+||+.-++..
T Consensus 14 ~vni~gC~~ai~~~~LkK 31 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALKK 31 (95)
T ss_dssp EEECCSCHHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHHh
Confidence 568899999987766653
No 5
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=5.46 E-value=1e+02 Score=21.57 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=25.1
Q ss_pred cccccHHHHHHHHHhCC---cccChhhhHHHHhccccccc
Q 039417 38 QIQACSGEIILFFLNGE---TYLGDGCCNAIRTIRKKCWP 74 (164)
Q Consensus 38 ~VqGCv~EIi~sflnGe---~~LGp~CCkAI~~I~~dCWP 74 (164)
-+++|-..+ +.=-.|. ..+...||+-+..|.+.|.=
T Consensus 12 pL~~CR~yv-~~q~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 12 ALPACRPLL-RLQCNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CCTTHHHHH-HHHTTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred ccHHHHHHH-HHHhcCCCCcchHHHHHHHHHHhcCcccch
Confidence 356786654 3334443 35668999999999999964
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.55 E-value=1.7e+02 Score=16.19 Aligned_cols=8 Identities=63% Similarity=0.990 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 039417 7 LFVFSFLM 14 (164)
Q Consensus 7 l~~~~~l~ 14 (164)
|||||+|.
T Consensus 24 lfvfiali 31 (34)
T d1xmeb2 24 LFVFIALI 31 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56777665
No 7
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=4.35 E-value=2.1e+02 Score=17.97 Aligned_cols=35 Identities=26% Similarity=0.693 Sum_probs=24.2
Q ss_pred hhccccccHHHHHHHHHhCCcccChhhhHHHHhcccccccc
Q 039417 35 SLIQIQACSGEIILFFLNGETYLGDGCCNAIRTIRKKCWPN 75 (164)
Q Consensus 35 SL~~VqGCv~EIi~sflnGe~~LGp~CCkAI~~I~~dCWP~ 75 (164)
+.+++..|...| +.| +.-..+||.-+++ .+-|.=.
T Consensus 3 ~p~~L~~C~~Ai----~~g-~~PS~~CC~kLke-Q~~ClC~ 37 (67)
T d1tuka1 3 QASQLAVCASAI----LSG-AKPSGECCGNLRA-QQGCFCQ 37 (67)
T ss_dssp CGGGGGGGHHHH----HHC-CCCCHHHHHHHHH-HGGGHHH
T ss_pred ChhhccccHHHH----hcC-CCCcHHHHHHHHh-cCCccce
Confidence 346788898776 333 3667899999988 4567543
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.80 E-value=1.4e+02 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039417 121 YTFIIIIVIVLLIIDLTYL 139 (164)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~ 139 (164)
|.|.++++++++.+|..|+
T Consensus 28 ~~~a~~~~~~~~~~~~vy~ 46 (248)
T d2r6gf1 28 YLFAITTLILSSAGLYIFA 46 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHheEEEEE
Confidence 5677777888888887776
No 9
>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.72 E-value=3e+02 Score=17.51 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=12.4
Q ss_pred ccccCCCCCCCCCCCCCCCccCCcc
Q 039417 93 YCDHETPAAIVHTQPAPIPVETNSG 117 (164)
Q Consensus 93 yCs~~~~~~~~~~~p~~~pv~~~~~ 117 (164)
.|.+.....+.+|...|..-.|.+|
T Consensus 126 ICe~~~~~~~~~p~~~~~~~~p~~~ 150 (150)
T d1wk1a_ 126 ICQKHRYDSDHKPNTIGDASGPSSG 150 (150)
T ss_dssp CEECCCCCCCCCSCCCCCCCCCCCC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCC
Confidence 3665554443444444444555554
No 10
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.56 E-value=3.2e+02 Score=16.43 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=14.4
Q ss_pred hhcccccCCCCCCCCCCCCCCCccCC
Q 039417 90 LEGYCDHETPAAIVHTQPAPIPVETN 115 (164)
Q Consensus 90 LKgyCs~~~~~~~~~~~p~~~pv~~~ 115 (164)
||+.|-.=.+.+.+++|+.=+|.++-
T Consensus 15 L~~~CP~CG~~t~~a~P~rfSPeDky 40 (55)
T d2apob1 15 LKEICPKCGEKTVIPKPPKFSLEDRW 40 (55)
T ss_dssp SSSBCSSSCSBCBCCCCCCCCTTCTT
T ss_pred ccccCcCCCCccCccCCCCCCCCcch
Confidence 57777664444434455555555543
Done!