Query 039418
Match_columns 297
No_of_seqs 168 out of 337
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8y_A Upstream binding factor 99.7 4.4E-17 1.5E-21 125.7 5.5 60 29-90 2-61 (91)
2 2d7l_A WD repeat and HMG-box D 99.6 1.1E-15 3.6E-20 115.8 6.6 61 30-90 4-64 (81)
3 1ckt_A High mobility group 1 p 99.6 2.2E-15 7.5E-20 110.6 5.4 59 31-89 1-60 (71)
4 4a3n_A Transcription factor SO 99.5 2.8E-15 9.5E-20 109.9 4.7 60 30-90 1-60 (71)
5 1hry_A Human SRY; DNA, DNA-bin 99.5 4.5E-15 1.5E-19 110.4 5.9 60 30-90 3-62 (76)
6 1i11_A Transcription factor SO 99.5 6.3E-15 2.2E-19 111.1 5.6 61 29-90 2-62 (81)
7 3f27_D Transcription factor SO 99.5 7.4E-15 2.5E-19 111.1 5.3 62 28-90 3-64 (83)
8 1j46_A SRY, sex-determining re 99.5 1.1E-14 3.9E-19 110.8 6.3 60 30-90 3-62 (85)
9 2eqz_A High mobility group pro 99.5 1.2E-14 4.1E-19 110.9 6.2 60 30-89 14-74 (86)
10 1wz6_A HMG-box transcription f 99.5 1.4E-14 4.9E-19 109.3 6.1 61 29-90 5-65 (82)
11 1gt0_D Transcription factor SO 99.5 1.5E-14 5.3E-19 108.6 6.0 60 30-90 1-60 (80)
12 1hme_A High mobility group pro 99.5 1.2E-14 4.1E-19 108.4 5.3 60 30-90 5-64 (77)
13 2cs1_A PMS1 protein homolog 1; 99.5 2E-14 6.8E-19 111.0 6.6 61 29-90 5-65 (92)
14 2e6o_A HMG box-containing prot 99.5 1.1E-14 3.8E-19 111.3 4.9 60 30-90 16-75 (87)
15 1wgf_A Upstream binding factor 99.5 1.3E-14 4.4E-19 111.8 5.2 63 30-93 19-81 (90)
16 3fgh_A Transcription factor A, 99.5 9.1E-15 3.1E-19 106.3 3.9 55 30-89 1-55 (67)
17 1aab_A High mobility group pro 99.5 8.5E-15 2.9E-19 110.9 3.9 61 30-90 6-67 (83)
18 3u2b_C Transcription factor SO 99.5 1.7E-14 5.7E-19 108.0 5.4 60 30-90 1-60 (79)
19 2crj_A SWI/SNF-related matrix- 99.5 2.2E-14 7.5E-19 110.8 5.7 60 30-90 6-65 (92)
20 2lef_A LEF-1 HMG, protein (lym 99.5 2.7E-14 9.2E-19 108.9 6.1 59 31-90 2-60 (86)
21 3nm9_A HMG-D, high mobility gr 99.5 2E-14 6.7E-19 106.3 4.8 57 30-89 2-58 (73)
22 1k99_A Upstream binding factor 99.5 2.5E-14 8.6E-19 112.1 4.5 60 30-90 9-68 (99)
23 4euw_A Transcription factor SO 99.5 5.5E-14 1.9E-18 111.5 6.3 62 28-90 26-87 (106)
24 2co9_A Thymus high mobility gr 99.5 5.5E-14 1.9E-18 110.7 6.1 61 29-90 15-75 (102)
25 2cto_A Novel protein; high mob 99.4 3.4E-14 1.1E-18 110.2 3.3 58 30-90 9-69 (93)
26 1wxl_A Single-strand recogniti 99.4 1E-13 3.6E-18 102.4 5.6 58 30-90 2-59 (73)
27 1cg7_A Protein (NON histone pr 99.4 4.6E-14 1.6E-18 109.2 1.9 60 30-90 19-78 (93)
28 2lhj_A High mobility group pro 99.4 6.9E-14 2.4E-18 109.0 2.2 59 30-89 21-81 (97)
29 2yuk_A Myeloid/lymphoid or mix 99.4 4.9E-14 1.7E-18 108.5 0.3 56 30-90 21-78 (90)
30 1v63_A Nucleolar transcription 99.3 1.1E-12 3.8E-17 103.1 5.6 81 28-124 5-87 (101)
31 2gzk_A Sex-determining region 99.3 2.3E-12 8E-17 108.7 5.5 59 30-89 87-145 (159)
32 2yrq_A High mobility group pro 99.2 4.6E-12 1.6E-16 108.4 5.6 61 29-89 13-74 (173)
33 1v64_A Nucleolar transcription 99.2 2.8E-12 9.7E-17 102.0 3.8 78 30-123 15-93 (108)
34 2yrq_A High mobility group pro 99.2 4.8E-12 1.6E-16 108.3 5.4 59 30-89 100-158 (173)
35 3tq6_A Transcription factor A, 99.2 1.4E-11 4.9E-16 109.1 4.8 61 29-90 7-67 (214)
36 3tmm_A Transcription factor A, 99.1 2E-11 6.9E-16 109.8 4.8 60 30-90 40-99 (238)
37 2gzk_A Sex-determining region 99.1 4.5E-11 1.5E-15 100.7 5.6 60 29-89 2-61 (159)
38 3tq6_A Transcription factor A, 99.0 2.7E-11 9.3E-16 107.3 1.0 56 29-89 112-167 (214)
39 3tmm_A Transcription factor A, 99.0 5.5E-11 1.9E-15 107.0 0.4 56 29-89 144-199 (238)
40 2o37_A Protein SIS1; HSP40, J- 23.8 69 0.0024 23.2 3.5 40 42-81 25-65 (92)
41 2qgu_A Probable signal peptide 23.3 38 0.0013 28.8 2.2 25 63-87 78-102 (211)
42 1vej_A Riken cDNA 4931431F19; 22.1 54 0.0019 23.4 2.5 39 117-155 30-73 (74)
43 2yua_A Williams-beuren syndrom 22.0 99 0.0034 22.6 4.1 44 41-84 33-80 (99)
No 1
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.67 E-value=4.4e-17 Score=125.67 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=56.6
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
+||||||+||||+|+++||.+|++.+|+ .+.+|+|.+|++|++||++||.||.++|.+-+
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK 61 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQ 61 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999996 78999999999999999999999999987644
No 2
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=115.81 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|++++|++++++||+...+.+|+|.+|++|++||++||.+|.++|++..
T Consensus 4 ~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 4 GSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999976449999999999999999999999999999864
No 3
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.57 E-value=2.2e-15 Score=110.59 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=55.0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhCCCCc-chhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 31 KDRENNHGFISFFAESVRQLKAKDGRAC-ITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 31 ~~~r~~~~f~~~~~~~~~~~~~~~~~~~-~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
|||||+||||+|++++|+++++.||+.. ++.+|+|.+|..|++||++||++|.++|++.
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 60 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999999765 4699999999999999999999999998863
No 4
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.55 E-value=2.8e-15 Score=109.87 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++++|+++++.||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 60 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 60 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 369999999999999999999999995 569999999999999999999999999998743
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.55 E-value=4.5e-15 Score=110.43 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=56.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++|+|++++++||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 3 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 62 (76)
T 1hry_A 3 DRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999995 589999999999999999999999999998743
No 6
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.53 E-value=6.3e-15 Score=111.08 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
+++||||+||||+|++|+|++++++||+ ..+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 62 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLS 62 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999995 579999999999999999999999999888744
No 7
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.52 E-value=7.4e-15 Score=111.06 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=54.8
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 28 RGSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 28 ~~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
.+++||||+||||+|++++|+.++++||+ ..+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 64 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLR 64 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999995 579999999999999999999999999998744
No 8
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.52 E-value=1.1e-14 Score=110.76 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=56.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|+.|+|+++++.||+ ..+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 3 ~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 62 (85)
T 1j46_A 3 DRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62 (85)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999994 589999999999999999999999999998743
No 9
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=110.85 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCc-chhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRAC-ITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~-~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
++||||+||||+|++++|.++++.||+.. .+.+|+|.+|+.|++||++||++|.+.|++.
T Consensus 14 ~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 74 (86)
T 2eqz_A 14 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKAD 74 (86)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999775 3799999999999999999999999999863
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.51 E-value=1.4e-14 Score=109.34 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
.++||||+||||+|++++|++++++||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 5 ~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 65 (82)
T 1wz6_A 5 SSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYK 65 (82)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999995 689999999999999999999999999998744
No 11
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.51 E-value=1.5e-14 Score=108.60 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++++|+++++.||+ ..+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 60 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999995 689999999999999999999999999998744
No 12
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.51 E-value=1.2e-14 Score=108.36 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|+.++|+++++.||+ .++.+|++.+|..|++||++||++|.++|++..
T Consensus 5 ~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 64 (77)
T 1hme_A 5 NAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 64 (77)
T ss_dssp SCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 689999999999999999999999999998743
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=111.05 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
.++||||+||||+|++++|++++++||+ ..+.+|+|.+|+.|++||++||++|.++|++.+
T Consensus 5 p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 65 (92)
T 2cs1_A 5 SSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDL 65 (92)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999995 579999999999999999999999999999865
No 14
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=111.35 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++|+|+++++.||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 16 ~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 75 (87)
T 2e6o_A 16 NKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALA 75 (87)
T ss_dssp SSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 689999999999999999999999999998743
No 15
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.50 E-value=1.3e-14 Score=111.75 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCCCcc
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGGKAN 93 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~k~~ 93 (297)
|+||||+||||+|++|+|+++++.||+ ..+.+|+|.+|+.|++||++||++|.++|++.+..+
T Consensus 19 ~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y 81 (90)
T 1wgf_A 19 EKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQS 81 (90)
T ss_dssp CCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 689999999999999999999999999999866554
No 16
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.50 E-value=9.1e-15 Score=106.28 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=51.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
|+||||+|||++|++++|.++++.|| .+|+|.+|..|++||++||++|.++|++.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 55 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKED 55 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999888 58999999999999999999999998863
No 17
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.50 E-value=8.5e-15 Score=110.85 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=56.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCc-chhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRAC-ITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~-~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|++++|.++++.||+.. .+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 6 ~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 67 (83)
T 1aab_A 6 KKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 67 (83)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999765 47999999999999999999999999998743
No 18
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.50 E-value=1.7e-14 Score=108.00 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
+++|||+||||+|++++|+.++++|| ...+.+|+|.+|..|++||++||++|.+.|++..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k 60 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSP-DMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLR 60 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTST-TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999 5689999999999999999999999999998744
No 19
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.49 E-value=2.2e-14 Score=110.80 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=56.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|++++|++++++||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 6 ~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 65 (92)
T 2crj_A 6 SGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK 65 (92)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 579999999999999999999999999998743
No 20
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.49 E-value=2.7e-14 Score=108.85 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 31 KDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 31 ~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
+||||+||||+|++++|.++++.||+ ..+.+|++.+|..|++||++||++|.+.|++..
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 60 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKER 60 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 59999999999999999999999995 589999999999999999999999999998744
No 21
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.48 E-value=2e-14 Score=106.31 Aligned_cols=57 Identities=11% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
|+||||+||||+|++|+|++++++||+ .++.+|+|.+|..|++||+ |++|.++|++.
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~ 58 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKA 58 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHH
Confidence 789999999999999999999999994 5799999999999999998 99999999874
No 22
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.47 E-value=2.5e-14 Score=112.11 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++++|.++++.||+ .++.+|+|.+|..|++||++||++|.++|++..
T Consensus 9 ~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 68 (99)
T 1k99_A 9 DFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREK 68 (99)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999999995 589999999999999999999999999998743
No 23
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.46 E-value=5.5e-14 Score=111.48 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=56.5
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 28 RGSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 28 ~~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
..++||||+||||+|++++|+++++++|+ ..+.+|+|.+|..|++||++||++|.+.|++.+
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 87 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLR 87 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999994 588999999999999999999999999998754
No 24
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=5.5e-14 Score=110.69 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=56.7
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
.|+||||+||||+|++++|.++++.||+ ..+.+|+|.+|..|++||++||++|.++|++..
T Consensus 15 p~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k 75 (102)
T 2co9_A 15 PNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAK 75 (102)
T ss_dssp CCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999995 579999999999999999999999999998743
No 25
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-14 Score=110.21 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=53.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHH---HhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEI---RNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~---g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|++|+|++++++ ...+.+|+|.+ |++|++||++||++|.++|++-+
T Consensus 9 ~~PKRP~sAf~lF~~e~R~~ik~e---~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K 69 (93)
T 2cto_A 9 PNRKASRNAYYFFVQEKIPELRRR---GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWR 69 (93)
T ss_dssp CCCCSSCCHHHHHHHTTHHHHHHH---TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999998 46789999999 99999999999999999998654
No 26
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.43 E-value=1e-13 Score=102.37 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||+||||+|+++.|.+++++||+ .++.+|+|.+|..|++| +||++|.++|++.+
T Consensus 2 ~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k 59 (73)
T 1wxl_A 2 HMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK 59 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHH
Confidence 689999999999999999999999995 67999999999999999 88999999998743
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.40 E-value=4.6e-14 Score=109.24 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+||||+|++|+|.++++.||+ .++.+|+|.+|..|++||++||++|.++|++..
T Consensus 19 ~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k 78 (93)
T 1cg7_A 19 NAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK 78 (93)
T ss_dssp SCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 779999999999999999999999995 479999999999999999999999999998743
No 28
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.39 E-value=6.9e-14 Score=109.02 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=55.5
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcc--hhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACI--TNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~--~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
++||||+||||+|++++|.++++.||+. . +.+|+|.+|..|++||++||++|.+.|++.
T Consensus 21 ~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 81 (97)
T 2lhj_A 21 NAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDED 81 (97)
T ss_dssp CCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999964 5 899999999999999999999999999874
No 29
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.37 E-value=4.9e-14 Score=108.54 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcc--hhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACI--TNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~--~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
|+||||++|||+|++|+|+.++++||+ .. +++|+ ++|++||++||+||.++|++-+
T Consensus 21 naPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K 78 (90)
T 2yuk_A 21 ALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNR 78 (90)
T ss_dssp HHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHH
Confidence 779999999999999999999999994 45 77777 9999999999999999998743
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.33 E-value=1.1e-12 Score=103.13 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=61.3
Q ss_pred cCCCCCCCCcchhhhHHHHHHHHHHhCCCC--cchhHHHHHHHhhhcCCChHhhhhhhhhhhcCCCccccccceeeecCH
Q 039418 28 RGSKDRENNHGFISFFAESVRQLKAKDGRA--CITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGGKANVEKVKFLTRCAP 105 (297)
Q Consensus 28 ~~~~~~r~~~~f~~~~~~~~~~~~~~~~~~--~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~k~~v~k~~~~trcS~ 105 (297)
-|++||||+||||+|++|++. +|+. ..+.+|+|.+|.+|++||++||++|.++|++-+..+ .
T Consensus 5 ~~~~PKrP~say~lF~~e~~~-----~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y-----------~ 68 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS-----NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQY-----------K 68 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH-----HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-----------H
T ss_pred CCCCCCCCCCHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------H
Confidence 468899999999999999964 4543 357899999999999999999999999998743322 1
Q ss_pred HHHHHHHhhcCHHHHHHHH
Q 039418 106 DRLAALVSHLIEKQRKAVC 124 (297)
Q Consensus 106 ~~~~~~i~~Ls~~qk~~I~ 124 (297)
..+..-...++++++..+.
T Consensus 69 ~e~~~Y~~~~~~~~~~~~~ 87 (101)
T 1v63_A 69 VHLDLWVKSLSPQDRAAYK 87 (101)
T ss_dssp HHHHHHHHHSCTTHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHH
Confidence 2333344567777666544
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.28 E-value=2.3e-12 Score=108.65 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=55.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
++||||+||||+|++|+|..+++.||+ .++.+|+|.+|..|++||++||++|.++|.+.
T Consensus 87 ~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 145 (159)
T 2gzk_A 87 NAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 145 (159)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 68999999999999999999999999999863
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=108.39 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCC-cchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRA-CITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~-~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
.|+||||+||||+|++++|.++++.||+. ..+.+|+|.+|+.|++||++||++|.+.|++-
T Consensus 13 p~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 74 (173)
T 2yrq_A 13 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 74 (173)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999976 48999999999999999999999999998873
No 33
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.24 E-value=2.8e-12 Score=101.96 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCC-CCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCCCccccccceeeecCHHHH
Q 039418 30 SKD-RENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGGKANVEKVKFLTRCAPDRL 108 (297)
Q Consensus 30 ~~~-~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~k~~v~k~~~~trcS~~~~ 108 (297)
|+| |||+||||+|++|+|++++ ...+.+|+|.+|..|++||++||++|.++|++-...+ -..+
T Consensus 15 ~~P~KrP~say~lF~~e~r~~~k-----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y-----------~~e~ 78 (108)
T 1v64_A 15 GRPTKPPPNSYSLYCAELMANMK-----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDY-----------EVEL 78 (108)
T ss_dssp TSCCCCCSSHHHHHHHHHHHHCT-----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 678 9999999999999999987 4588999999999999999999999999998733222 1223
Q ss_pred HHHHhhcCHHHHHHH
Q 039418 109 AALVSHLIEKQRKAV 123 (297)
Q Consensus 109 ~~~i~~Ls~~qk~~I 123 (297)
..-...+++++++.+
T Consensus 79 ~~Y~~~~~~~~r~~~ 93 (108)
T 1v64_A 79 LRFLESLPEEEQQRV 93 (108)
T ss_dssp HHHHHHSCHHHHHHH
T ss_pred HHHHhhCCHHHHHHH
Confidence 344456777777654
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.8e-12 Score=108.30 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=55.9
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
++||||+||||+|++++|.++++.||+ ..+.+|+|.+|..|++||++||++|.++|.+.
T Consensus 100 ~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 158 (173)
T 2yrq_A 100 NAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 158 (173)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999995 68999999999999999999999999999863
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=109.13 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=56.7
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
.++||||+|||++|+++.|..+++.||+. ++.+|+|.+|+.|++||++||.+|.+.|++..
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k 67 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHH
Confidence 47899999999999999999999999955 69999999999999999999999999998743
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=109.81 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=56.1
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcCC
Q 039418 30 SKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRGG 90 (297)
Q Consensus 30 ~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~~ 90 (297)
++||||+|||++|+++.|+++++.||+. ++.+|+|.+|+.|++||++||.+|.+.|++.+
T Consensus 40 ~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k 99 (238)
T 3tmm_A 40 SCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 99 (238)
T ss_dssp HSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999955 69999999999999999999999999998733
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.12 E-value=4.5e-11 Score=100.74 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=56.3
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
.++||||++|||+|..+.+..+++.||+ ..+.+|+|.+|+.|++||++||.+|.+.|++.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 61 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHH
Confidence 3689999999999999999999999996 78999999999999999999999999998763
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.05 E-value=2.7e-11 Score=107.30 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=52.1
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
.|+||||+||||+|++|+|+.++..+|. +|+|.+|..|++||++||++|.++|.+-
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 167 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKED 167 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999988884 8999999999999999999999999873
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.98 E-value=5.5e-11 Score=106.97 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=52.1
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHhCCCCcchhHHHHHHHhhhcCCChHhhhhhhhhhhcC
Q 039418 29 GSKDRENNHGFISFFAESVRQLKAKDGRACITNEVRKEIRNAFKNLPVEEKCQYKFQSRRG 89 (297)
Q Consensus 29 ~~~~~r~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~k~~g~~wk~ls~~ek~~~~~~~~~~ 89 (297)
-++||||+||||+|++|+|+.++..||. +|+|.+|..|++||++||++|.++|.+-
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 199 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKED 199 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999988884 7999999999999999999999999873
No 40
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=23.83 E-value=69 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.031 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhCCCCc-chhHHHHHHHhhhcCCChHhhhh
Q 039418 42 FFAESVRQLKAKDGRAC-ITNEVRKEIRNAFKNLPVEEKCQ 81 (297)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~v~k~~g~~wk~ls~~ek~~ 81 (297)
-...|++..++-||+.. ...+.-+.+.++|..|++.++..
T Consensus 25 Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 25 LKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 35678888899999875 45567778999999999988653
No 41
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=23.35 E-value=38 Score=28.84 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.3
Q ss_pred HHHHHHhhhcCCChHhhhhhhhhhh
Q 039418 63 VRKEIRNAFKNLPVEEKCQYKFQSR 87 (297)
Q Consensus 63 v~k~~g~~wk~ls~~ek~~~~~~~~ 87 (297)
...++|.-|+.+|+++++.|.+.=+
T Consensus 78 a~~vLG~~wr~at~~Qr~~F~~~F~ 102 (211)
T 2qgu_A 78 TQIAMGRFWSQATPEQQQQIQDGFK 102 (211)
T ss_dssp HHHHHGGGTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhHhHhhCCHHHHHHHHHHHH
Confidence 3447899999999999997665433
No 42
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.11 E-value=54 Score=23.43 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCccc----cccccccccc-HHHHHHHHhccccCc
Q 039418 117 EKQRKAVCDIGLGS----IIDLKCGRLK-RKLCAWLVERIDTAR 155 (297)
Q Consensus 117 ~~qk~~I~~~GFg~----LL~i~~~~l~-~~L~~wL~~~~d~~t 155 (297)
++|.+-+.+|||.. +.-|....-+ ..-+.||..+.++.+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 56778899999942 2222222222 234789998888765
No 43
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.04 E-value=99 Score=22.63 Aligned_cols=44 Identities=16% Similarity=-0.101 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHhCCCCcch----hHHHHHHHhhhcCCChHhhhhhhh
Q 039418 41 SFFAESVRQLKAKDGRACIT----NEVRKEIRNAFKNLPVEEKCQYKF 84 (297)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~----~~v~k~~g~~wk~ls~~ek~~~~~ 84 (297)
--...||+..++-||+.... .+.-+.|.++|..|++.++..-.+
T Consensus 33 eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 33 QIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34567888889999987643 456678999999999988664444
Done!