Query 039421
Match_columns 112
No_of_seqs 116 out of 637
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03220 uncharacterized prote 100.0 2.2E-40 4.7E-45 234.0 11.0 101 1-106 1-102 (105)
2 PLN03090 auxin-responsive fami 100.0 3.9E-40 8.4E-45 232.6 10.4 99 1-107 1-103 (104)
3 PLN03219 uncharacterized prote 100.0 3.3E-37 7.1E-42 218.7 10.9 102 5-107 4-105 (108)
4 PF02519 Auxin_inducible: Auxi 100.0 5.9E-36 1.3E-40 209.2 9.7 100 1-108 1-100 (100)
5 PF02214 BTB_2: BTB/POZ domain 86.5 0.78 1.7E-05 30.1 2.8 57 46-109 2-62 (94)
6 PRK02899 adaptor protein; Prov 81.0 1.5 3.2E-05 33.8 2.6 24 69-93 39-62 (197)
7 PF02100 ODC_AZ: Ornithine dec 80.7 2.5 5.4E-05 29.7 3.5 50 56-107 24-77 (108)
8 PRK02315 adaptor protein; Prov 74.5 2.5 5.4E-05 33.3 2.2 24 69-93 39-62 (233)
9 PF05389 MecA: Negative regula 67.3 1.8 3.9E-05 33.2 0.0 25 68-93 38-62 (220)
10 smart00666 PB1 PB1 domain. Pho 63.1 26 0.00055 22.1 4.9 48 56-108 12-69 (81)
11 PF11834 DUF3354: Domain of un 59.3 17 0.00037 23.8 3.6 24 56-85 19-42 (69)
12 PF11822 DUF3342: Domain of un 50.3 23 0.00051 29.6 3.8 60 46-109 2-67 (317)
13 cd05992 PB1 The PB1 domain is 48.7 64 0.0014 20.0 7.3 49 56-108 11-69 (81)
14 PRK02797 4-alpha-L-fucosyltran 46.2 1.1E+02 0.0023 25.9 7.1 46 39-84 141-205 (322)
15 PF02209 VHP: Villin headpiece 42.5 14 0.00031 21.4 1.0 19 65-83 1-19 (36)
16 PF07429 Glyco_transf_56: 4-al 42.1 1.2E+02 0.0026 25.9 6.9 46 39-84 180-244 (360)
17 cd06080 MUM1_like Mutated mela 40.5 44 0.00095 22.5 3.3 44 41-84 28-75 (80)
18 smart00153 VHP Villin headpiec 39.4 19 0.0004 20.9 1.2 19 65-83 1-19 (36)
19 PF11876 DUF3396: Protein of u 39.1 27 0.00059 27.0 2.4 39 56-94 24-64 (208)
20 PF12058 DUF3539: Protein of u 38.4 5.7 0.00012 27.6 -1.3 11 64-74 4-14 (88)
21 PRK10308 3-methyl-adenine DNA 37.7 1.2E+02 0.0027 24.3 6.1 64 41-107 44-121 (283)
22 PF13778 DUF4174: Domain of un 34.0 29 0.00062 24.3 1.7 24 41-64 77-100 (118)
23 PF14317 YcxB: YcxB-like prote 33.7 93 0.002 17.8 3.7 33 39-75 26-58 (62)
24 PF08861 DUF1828: Domain of un 32.9 1.3E+02 0.0029 19.7 4.8 40 68-107 44-83 (90)
25 cd06410 PB1_UP2 Uncharacterize 31.6 1.1E+02 0.0023 21.1 4.2 57 42-106 13-81 (97)
26 COG1759 5-formaminoimidazole-4 30.4 23 0.00049 30.3 0.7 41 38-79 88-136 (361)
27 PF06544 DUF1115: Protein of u 28.7 2.1E+02 0.0045 20.0 6.0 27 59-85 2-28 (128)
28 cd04395 RhoGAP_ARHGAP21 RhoGAP 28.1 1.3E+02 0.0029 22.3 4.5 42 69-111 19-60 (196)
29 TIGR02529 EutJ ethanolamine ut 27.2 70 0.0015 24.7 3.0 43 56-99 32-74 (239)
30 cd06407 PB1_NLP A PB1 domain i 26.6 2E+02 0.0043 19.1 4.7 43 56-102 11-64 (82)
31 PRK14193 bifunctional 5,10-met 25.8 3.7E+02 0.0081 22.0 7.8 55 40-109 31-87 (284)
32 PF08948 DUF1859: Domain of un 25.3 27 0.00059 25.4 0.3 28 41-72 86-123 (126)
33 PF00651 BTB: BTB/POZ domain; 25.1 1.9E+02 0.0041 18.3 5.2 56 45-109 13-73 (111)
34 PF00564 PB1: PB1 domain; Int 24.7 1.8E+02 0.004 18.0 5.8 48 56-108 12-70 (84)
35 PF05194 UreE_C: UreE urease a 24.6 1.1E+02 0.0024 20.1 3.2 25 44-77 26-50 (87)
36 cd01406 SIR2-like Sir2-like: P 23.2 92 0.002 23.6 2.9 34 43-85 1-34 (242)
37 PF06344 Parecho_VpG: Parechov 23.2 42 0.00091 17.2 0.7 14 34-47 5-18 (20)
38 PRK14189 bifunctional 5,10-met 22.3 4.4E+02 0.0095 21.6 8.2 55 40-109 31-87 (285)
39 PLN02897 tetrahydrofolate dehy 21.9 4.9E+02 0.011 22.0 7.3 55 40-109 85-141 (345)
40 PF15387 DUF4611: Domain of un 21.5 67 0.0014 22.7 1.7 20 88-107 12-35 (96)
41 COG5431 Uncharacterized metal- 21.2 1.2E+02 0.0025 22.1 2.9 62 42-107 32-101 (117)
42 PRK13277 5-formaminoimidazole- 21.1 29 0.00064 29.5 -0.2 23 38-62 88-111 (366)
43 PRK14166 bifunctional 5,10-met 20.1 4.9E+02 0.011 21.3 7.9 55 40-109 29-85 (282)
No 1
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=234.00 Aligned_cols=101 Identities=48% Similarity=0.822 Sum_probs=88.1
Q ss_pred CCcchhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCC-CcceEEEEeccCcCcHHHHHHHHhHH
Q 039421 1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQED-KKKKRFVVPISYLKHPLFQALLSQAE 79 (112)
Q Consensus 1 m~~~~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~-~~~~RfvVp~~~L~hP~F~~LL~~ae 79 (112)
||++++.|..+.|++|+||+ ++++.+.+ ++++.+|||||||||||+++ .+++||+||++|||||.|++||++||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~----~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~Ae 75 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTS----SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE 75 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hccccccc----ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHH
Confidence 99999999988899999999 66553221 23567899999999999842 34899999999999999999999999
Q ss_pred HhcCCccCCCcEEecccHHHHHHHHHh
Q 039421 80 EEFGFDYRMHGITIPCGEDEFLNLTSR 106 (112)
Q Consensus 80 EEfG~~~~~G~L~IPC~~~~Fe~vl~~ 106 (112)
|||||+|++|+|+|||+++.|++++..
T Consensus 76 EEfGf~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 76 EEFGFNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred HHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence 999999767999999999999999864
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=232.62 Aligned_cols=99 Identities=52% Similarity=0.821 Sum_probs=86.4
Q ss_pred CCcchh----HHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHH
Q 039421 1 MGIKMQ----DMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLS 76 (112)
Q Consensus 1 m~~~~~----~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~ 76 (112)
|||+.. .++ ++|++|+||.|.++.. ++.+...+.+||+||||||||++ ++||+||++|||||+|++||+
T Consensus 1 m~~~k~~ki~~~~-~~kq~l~r~~s~~~~~---~~~~~~~~~~vpkG~~aVyVG~~---~~RfvVp~~~L~hP~F~~LL~ 73 (104)
T PLN03090 1 MAIKKSNKLTQTA-MLKQILKRCSSLGKKQ---GYDEDGLPLDVPKGHFPVYVGEN---RSRYIVPISFLTHPEFQSLLQ 73 (104)
T ss_pred CCcccccchhHHH-HHHHHHHHHHHhcccC---CcccccCCCCCCCCcEEEEECCC---CEEEEEEHHHcCCHHHHHHHH
Confidence 776644 577 9999999999998543 22223467899999999999996 899999999999999999999
Q ss_pred hHHHhcCCccCCCcEEecccHHHHHHHHHhh
Q 039421 77 QAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107 (112)
Q Consensus 77 ~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 107 (112)
+|||||||++ +|+|+|||+++.|++++|+|
T Consensus 74 ~aeeEfGf~~-~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 74 QAEEEFGFDH-DMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred HHHHHhCCCC-CCcEEEeCCHHHHHHHHHHh
Confidence 9999999996 68999999999999999998
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=218.72 Aligned_cols=102 Identities=50% Similarity=0.828 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCC
Q 039421 5 MQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGF 84 (112)
Q Consensus 5 ~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 84 (112)
+.+++..+|+|.|--+-.++......|.+++++.+|||||+|||||++ ++++||+||++|||||+|++||++|||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~-~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf 82 (108)
T PLN03219 4 MRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGF 82 (108)
T ss_pred HHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCC-CCceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 356777999999855544434334444445667899999999999983 4599999999999999999999999999999
Q ss_pred ccCCCcEEecccHHHHHHHHHhh
Q 039421 85 DYRMHGITIPCGEDEFLNLTSRL 107 (112)
Q Consensus 85 ~~~~G~L~IPC~~~~Fe~vl~~l 107 (112)
+|++|+|+|||+++.|+++++.-
T Consensus 83 ~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 83 HHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCEEEeCCHHHHHHHHHhh
Confidence 97779999999999999999863
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=5.9e-36 Score=209.25 Aligned_cols=100 Identities=52% Similarity=0.816 Sum_probs=77.3
Q ss_pred CCcchhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHH
Q 039421 1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEE 80 (112)
Q Consensus 1 m~~~~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeE 80 (112)
|..++..+. .+++..++..+.... .++..+++..++|+||||||||++ ++||+||++|||||+|++||++|||
T Consensus 1 M~~~~k~~~-~~~k~~~~~~~~~~~---~~~~~~~~~~~vp~G~~~VyVG~~---~~Rfvvp~~~L~hp~f~~LL~~aee 73 (100)
T PF02519_consen 1 MASRLKSLA-SAKKWQSRARSKSSS---SSSSRSSSESDVPKGHFAVYVGEE---RRRFVVPVSYLNHPLFQELLEQAEE 73 (100)
T ss_pred CccHHHHHH-HHHhhhhhhhhcccc---cccccccccCCCCCCeEEEEeCcc---ceEEEechHHcCchhHHHHHHHHhh
Confidence 566666666 444433333322111 111122334889999999999996 8999999999999999999999999
Q ss_pred hcCCccCCCcEEecccHHHHHHHHHhhc
Q 039421 81 EFGFDYRMHGITIPCGEDEFLNLTSRLN 108 (112)
Q Consensus 81 EfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 108 (112)
||||++ +|+|+|||+++.|++++|+|+
T Consensus 74 EfG~~~-~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 74 EFGFDQ-DGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred hcCcCC-CCcEEeeCCHHHHHHHHHHhC
Confidence 999996 799999999999999999985
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=86.51 E-value=0.78 Score=30.14 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=42.9
Q ss_pred EEEEccCCCcceEEEEeccCcC-cH--HHHHHHHhH-HHhcCCccCCCcEEecccHHHHHHHHHhhcc
Q 039421 46 AIYVGQEDKKKKRFVVPISYLK-HP--LFQALLSQA-EEEFGFDYRMHGITIPCGEDEFLNLTSRLNY 109 (112)
Q Consensus 46 ~VyVG~~~~~~~RfvVp~~~L~-hP--~F~~LL~~a-eEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 109 (112)
.+-||. ++|.++.+.|. +| .|..|+... ...+. ..+|.+-|-++...|++|+..+..
T Consensus 2 ~lNVGG-----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~--~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 2 RLNVGG-----TIFETSRSTLTRYPDSLLARLFSGERSDDYD--DDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEEETT-----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEE--TTTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEEECC-----EEEEEcHHHHhhCCCChhhhHHhhccccccC--CccceEEeccChhhhhHHHHHHhh
Confidence 345666 59999999887 54 688888865 22222 246999999999999999999887
No 6
>PRK02899 adaptor protein; Provisional
Probab=80.98 E-value=1.5 Score=33.82 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHhcCCccCCCcEEe
Q 039421 69 PLFQALLSQAEEEFGFDYRMHGITI 93 (112)
Q Consensus 69 P~F~~LL~~aeEEfG~~~~~G~L~I 93 (112)
-+|.++|++|..|+||. .+|||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~-~~~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFE-ADGPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcc-cCCeEEE
Confidence 35888899999999998 5799985
No 7
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=80.68 E-value=2.5 Score=29.74 Aligned_cols=50 Identities=30% Similarity=0.341 Sum_probs=27.1
Q ss_pred ceEEE-EeccCcCc---HHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhh
Q 039421 56 KKRFV-VPISYLKH---PLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107 (112)
Q Consensus 56 ~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 107 (112)
+.=|+ +|-..+.+ ..|.+||+.|||.++.++ -.+.++=+-.....++..+
T Consensus 24 ~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 24 RTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence 56666 56555444 459999999999999874 5677776655555555443
No 8
>PRK02315 adaptor protein; Provisional
Probab=74.46 E-value=2.5 Score=33.26 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHhcCCccCCCcEEe
Q 039421 69 PLFQALLSQAEEEFGFDYRMHGITI 93 (112)
Q Consensus 69 P~F~~LL~~aeEEfG~~~~~G~L~I 93 (112)
-+|.++|++|..|+||.. +|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~-~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFAD-EGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCccc-CCeEEE
Confidence 469999999999999994 899986
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=67.29 E-value=1.8 Score=33.24 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=0.0
Q ss_pred cHHHHHHHHhHHHhcCCccCCCcEEe
Q 039421 68 HPLFQALLSQAEEEFGFDYRMHGITI 93 (112)
Q Consensus 68 hP~F~~LL~~aeEEfG~~~~~G~L~I 93 (112)
+-+|.++|++|.+|+||.. +|+|++
T Consensus 38 e~fF~~ileea~~e~~F~~-~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEN-DGPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCccc-CCeEEE
Confidence 3469999999999999995 798875
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=63.12 E-value=26 Score=22.13 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=35.3
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCCc----------cCCCcEEecccHHHHHHHHHhhc
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGFD----------YRMHGITIPCGEDEFLNLTSRLN 108 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 108 (112)
.+||.||- .+.|.+|..+..+.|+.. .++..++|.|+. ++...+.+..
T Consensus 12 ~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD 69 (81)
T ss_pred EEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence 89999986 777999999999998874 122367888866 5666665544
No 11
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=59.29 E-value=17 Score=23.81 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=19.3
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCCc
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGFD 85 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 85 (112)
.+-..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4556666 36999999999999985
No 12
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=50.26 E-value=23 Score=29.62 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=43.0
Q ss_pred EEEEccC-CCcceEEEEeccCcCcH--HHHHHHHh---HHHhcCCccCCCcEEecccHHHHHHHHHhhcc
Q 039421 46 AIYVGQE-DKKKKRFVVPISYLKHP--LFQALLSQ---AEEEFGFDYRMHGITIPCGEDEFLNLTSRLNY 109 (112)
Q Consensus 46 ~VyVG~~-~~~~~RfvVp~~~L~hP--~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 109 (112)
+|-|=++ .+..+=|..|.+.|-.- -|++.|.. +.++. ++=.|.+-||+..|+.++.-+++
T Consensus 2 ~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~----~~idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 2 VIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW----EEIDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred EEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcC----CCcceEEecChhHHHHHHHHhhc
Confidence 4555443 24478899999988654 49999965 44332 23569999999999999987754
No 13
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=48.66 E-value=64 Score=20.04 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=35.8
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCCc---------cCC-CcEEecccHHHHHHHHHhhc
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGFD---------YRM-HGITIPCGEDEFLNLTSRLN 108 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~---------~~~-G~L~IPC~~~~Fe~vl~~l~ 108 (112)
.+||.+|. .++.|.+|..+-.+.|++. -++ -.++|.++ ++|+..+....
T Consensus 11 ~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~ 69 (81)
T cd05992 11 IRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEAR 69 (81)
T ss_pred CEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHh
Confidence 89999998 7888999999988888874 112 34566665 46777766654
No 14
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=46.15 E-value=1.1e+02 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCCCCeEEEEEccCCC-----------------cceEEEEeccC--cCcHHHHHHHHhHHHhcCC
Q 039421 39 DVPKGHFAIYVGQEDK-----------------KKKRFVVPISY--LKHPLFQALLSQAEEEFGF 84 (112)
Q Consensus 39 ~vpkG~~~VyVG~~~~-----------------~~~RfvVp~~~--L~hP~F~~LL~~aeEEfG~ 84 (112)
..+++.++|.||.+++ +.-|+.||++| =|.--.++..+.+.|-||-
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~ 205 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA 205 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc
Confidence 3477899999997642 34599999999 4555566666666777874
No 15
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=42.54 E-value=14 Score=21.42 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.1
Q ss_pred CcCcHHHHHHHHhHHHhcC
Q 039421 65 YLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 65 ~L~hP~F~~LL~~aeEEfG 83 (112)
||+.-.|++++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999874
No 16
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=42.13 E-value=1.2e+02 Score=25.94 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=35.5
Q ss_pred CCCCCeEEEEEccCC-----------------CcceEEEEeccCcC--cHHHHHHHHhHHHhcCC
Q 039421 39 DVPKGHFAIYVGQED-----------------KKKKRFVVPISYLK--HPLFQALLSQAEEEFGF 84 (112)
Q Consensus 39 ~vpkG~~~VyVG~~~-----------------~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~ 84 (112)
..+++-++|.||.++ ++..|++||++|=. .--.+++.+.+++-||-
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~ 244 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA 244 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc
Confidence 456789999999763 24689999999974 55677777777777884
No 17
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=40.51 E-value=44 Score=22.45 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCCeEEEEEccC-CCcceEEEEeccCcCcHHH---HHHHHhHHHhcCC
Q 039421 41 PKGHFAIYVGQE-DKKKKRFVVPISYLKHPLF---QALLSQAEEEFGF 84 (112)
Q Consensus 41 pkG~~~VyVG~~-~~~~~RfvVp~~~L~hP~F---~~LL~~aeEEfG~ 84 (112)
++-+.+.+.|+. .-...++-+..-|+.|+.+ +.|+++|.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 667888889986 3446788889999999999 5899999998763
No 18
>smart00153 VHP Villin headpiece domain.
Probab=39.44 E-value=19 Score=20.86 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=16.8
Q ss_pred CcCcHHHHHHHHhHHHhcC
Q 039421 65 YLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 65 ~L~hP~F~~LL~~aeEEfG 83 (112)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999874
No 19
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=39.09 E-value=27 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=31.9
Q ss_pred ceEEEEeccCcCc-H-HHHHHHHhHHHhcCCccCCCcEEec
Q 039421 56 KKRFVVPISYLKH-P-LFQALLSQAEEEFGFDYRMHGITIP 94 (112)
Q Consensus 56 ~~RfvVp~~~L~h-P-~F~~LL~~aeEEfG~~~~~G~L~IP 94 (112)
-=+|.+|++||.. | .|++|+....+.+-+.|.-+++.+-
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~ 64 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFN 64 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEe
Confidence 5689999999987 2 4999999999998888766676654
No 20
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=38.36 E-value=5.7 Score=27.63 Aligned_cols=11 Identities=55% Similarity=1.065 Sum_probs=7.9
Q ss_pred cCcCcHHHHHH
Q 039421 64 SYLKHPLFQAL 74 (112)
Q Consensus 64 ~~L~hP~F~~L 74 (112)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999988544
No 21
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=37.70 E-value=1.2e+02 Score=24.34 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=41.9
Q ss_pred CCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccC--------------CCcEEecccHHHHHHHHHh
Q 039421 41 PKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYR--------------MHGITIPCGEDEFLNLTSR 106 (112)
Q Consensus 41 pkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~Fe~vl~~ 106 (112)
-.|.+.|.-.++ ..++.|.++.-.-|....++.+...-|+.+.+ .-+|+||...+.||-+++.
T Consensus 44 ~~~~~~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~a 120 (283)
T PRK10308 44 HRGVVTVIPDIA---RHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRA 120 (283)
T ss_pred ccEEEEEEEcCC---CceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence 345555554442 45666666654335555677777777776632 2459999999999999887
Q ss_pred h
Q 039421 107 L 107 (112)
Q Consensus 107 l 107 (112)
|
T Consensus 121 I 121 (283)
T PRK10308 121 I 121 (283)
T ss_pred H
Confidence 6
No 22
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=34.04 E-value=29 Score=24.30 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.3
Q ss_pred CCCeEEEEEccCCCcceEEEEecc
Q 039421 41 PKGHFAIYVGQEDKKKKRFVVPIS 64 (112)
Q Consensus 41 pkG~~~VyVG~~~~~~~RfvVp~~ 64 (112)
|.|+-.|.||++++...|+--|++
T Consensus 77 ~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCceEEEEEeCCCcEEEecCCCCC
Confidence 777778889998888888877764
No 23
>PF14317 YcxB: YcxB-like protein
Probab=33.65 E-value=93 Score=17.80 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=24.4
Q ss_pred CCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHH
Q 039421 39 DVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALL 75 (112)
Q Consensus 39 ~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL 75 (112)
..-+.++-+|++. ..-++||-+.++.-...++.
T Consensus 26 ~e~~~~~~l~~~~----~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 26 VETKDYFYLYLGK----NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred EEeCCEEEEEECC----CeEEEEEHHHCCHhHHHHHH
Confidence 3467788899988 58999999999854444443
No 24
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=32.93 E-value=1.3e+02 Score=19.71 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=34.0
Q ss_pred cHHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhh
Q 039421 68 HPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107 (112)
Q Consensus 68 hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 107 (112)
.|.=+++|+..-..||+.-.+|.|.+.++.+.|-.....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 6777899999999999998889999999999887765543
No 25
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.65 E-value=1.1e+02 Score=21.09 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=36.9
Q ss_pred CCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccC------------CCcEEecccHHHHHHHHHh
Q 039421 42 KGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYR------------MHGITIPCGEDEFLNLTSR 106 (112)
Q Consensus 42 kG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~------------~G~L~IPC~~~~Fe~vl~~ 106 (112)
.+--.=|||.+ .+-..|+-+ ..|.+|..+..+.++..+. ++-+.|.||. +..+++..
T Consensus 13 ~dg~l~Y~GG~---tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~De-Dl~~M~~e 81 (97)
T cd06410 13 PDGQLRYVGGE---TRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDE-DLKNMMEE 81 (97)
T ss_pred CCCCEEEcCCc---eEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcH-HHHHHHHh
Confidence 33335799986 677777766 3677788888887776541 3456677887 34444443
No 26
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=30.40 E-value=23 Score=30.27 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEEccCCCcceEEEEecc-------Cc-CcHHHHHHHHhHH
Q 039421 38 SDVPKGHFAIYVGQEDKKKKRFVVPIS-------YL-KHPLFQALLSQAE 79 (112)
Q Consensus 38 ~~vpkG~~~VyVG~~~~~~~RfvVp~~-------~L-~hP~F~~LL~~ae 79 (112)
.-+|.|.|++|||-++ --..|.||+= .= ..-.=..||++|.
T Consensus 88 I~IP~gSfv~Y~G~d~-ie~~~~vP~fGnR~lLrwE~~~~~~~~lLekAg 136 (361)
T COG1759 88 IFIPHGSFVAYVGYDG-IENEFEVPMFGNRELLRWEEDRKLEYKLLEKAG 136 (361)
T ss_pred EEecCCceEEEecchh-hhhcccCcccccHhHhhhhcchhhHHHHHHHcC
Confidence 3489999999999641 2356777751 00 1223457888775
No 27
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=28.66 E-value=2.1e+02 Score=20.04 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEeccCcCcHHHHHHHHhHHHhcCCc
Q 039421 59 FVVPISYLKHPLFQALLSQAEEEFGFD 85 (112)
Q Consensus 59 fvVp~~~L~hP~F~~LL~~aeEEfG~~ 85 (112)
++-.+..|.||.-+--++.-++|++..
T Consensus 2 ~~~~I~~L~~p~~R~kI~~nA~ql~Lt 28 (128)
T PF06544_consen 2 YVHHIKSLSNPKKRFKIDKNAKQLHLT 28 (128)
T ss_pred EEEEeCcccCHHHHHHHHHHHHHhCCe
Confidence 345678899999999999999998764
No 28
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=28.12 E-value=1.3e+02 Score=22.34 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 69 PLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 69 P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
|.|-+..-..-++.|.+ ..|.-++|.+...-+++...+++|.
T Consensus 19 P~iv~~~~~~l~~~g~~-~eGIFR~~g~~~~i~~l~~~l~~~~ 60 (196)
T cd04395 19 PLIVEVCCNIVEARGLE-TVGIYRVPGNNAAISALQEELNRGG 60 (196)
T ss_pred ChHHHHHHHHHHHcCCC-CccceeCCCcHHHHHHHHHHHhcCC
Confidence 55554455556788987 4799999999999999999998774
No 29
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.20 E-value=70 Score=24.73 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=29.4
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEEecccHHH
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDE 99 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~ 99 (112)
..+.++-++-.. -+++.|++++|+-.|....+-.+++||....
T Consensus 32 ~~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~ 74 (239)
T TIGR02529 32 RDGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTIE 74 (239)
T ss_pred cCCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCCc
Confidence 344444444333 3688999999888888655678999997643
No 30
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=26.58 E-value=2e+02 Score=19.07 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCCcc-----------CCCcEEecccHHHHHH
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGFDY-----------RMHGITIPCGEDEFLN 102 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~Fe~ 102 (112)
..||.+|.+- -|++|.++-.+-|+++. ++...+|.|+.+.=|-
T Consensus 11 ~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~ea 64 (82)
T cd06407 11 KIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEEC 64 (82)
T ss_pred EEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHH
Confidence 8999988754 68888888888887752 2345678888865543
No 31
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.77 E-value=3.7e+02 Score=21.98 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhcc
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNY 109 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 109 (112)
.+.+...|+||++. ..-.....-.++.|++|++. -.+.+| ++.++|...+..+++
T Consensus 31 ~~P~LaiI~vg~d~-------------as~~Yv~~k~k~a~~~Gi~~--~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 31 ITPGLGTVLVGDDP-------------GSQAYVRGKHRDCAEVGITS--IRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CCceEEEEEeCCCH-------------HHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44588899999862 22345667778889999974 356778 888899998888864
No 32
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=25.27 E-value=27 Score=25.36 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=7.7
Q ss_pred CCCeEEEEEccCCCcceEEE----------EeccCcCcHHHH
Q 039421 41 PKGHFAIYVGQEDKKKKRFV----------VPISYLKHPLFQ 72 (112)
Q Consensus 41 pkG~~~VyVG~~~~~~~Rfv----------Vp~~~L~hP~F~ 72 (112)
..||+|+.|-. +-+|+ ||+-+||.|+-+
T Consensus 86 ~QGYfPlL~~~----~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG----RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE------SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc----hhhhhhhhccCCCcceeeEEEeceeee
Confidence 67999999955 33444 688888888644
No 33
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=25.12 E-value=1.9e+02 Score=18.35 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=38.6
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCC--cEEec-ccHHHHHHHHHhhcc
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMH--GITIP-CGEDEFLNLTSRLNY 109 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~IP-C~~~~Fe~vl~~l~~ 109 (112)
+.+.||+ .++|-+.-..| ..|.|+.+++... .. ..+ .+.++ |+.+.|+.++..+=.
T Consensus 13 ~~i~v~d----~~~~~vhk~iL~~~S~~F~~~~~~~~----~~-~~~~~~i~~~~~~~~~~~~~l~~~Y~ 73 (111)
T PF00651_consen 13 VTIRVGD----GKTFYVHKNILAARSPYFRNLFEGSK----FK-ESTVPEISLPDVSPEAFEAFLEYMYT 73 (111)
T ss_dssp EEEEETT----TEEEEE-HHHHHHHBHHHHHHHTTTT----ST-TSSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECC----CEEEeechhhhhccchhhhhcccccc----cc-cccccccccccccccccccccccccC
Confidence 4566675 36888888877 5699999999881 11 123 36555 789999999887643
No 34
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=24.70 E-value=1.8e+02 Score=18.03 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=31.2
Q ss_pred ceE-EEEeccCcCcHHHHHHHHhHHHhcCCc----------cCCCcEEecccHHHHHHHHHhhc
Q 039421 56 KKR-FVVPISYLKHPLFQALLSQAEEEFGFD----------YRMHGITIPCGEDEFLNLTSRLN 108 (112)
Q Consensus 56 ~~R-fvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 108 (112)
.+| +.+| ..+.|.+|..+.++.||.. .++-.++|.++. +|+..+...+
T Consensus 12 ~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~-Dl~~a~~~~~ 70 (84)
T PF00564_consen 12 IRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDE-DLQEAIEQAK 70 (84)
T ss_dssp EEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHH-HHHHHHHHHH
T ss_pred eEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHH-HHHHHHHHHH
Confidence 455 4444 4569999999999999983 122357777776 4555555443
No 35
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=24.59 E-value=1.1e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.651 Sum_probs=16.6
Q ss_pred eEEEEEccCCCcceEEEEeccCcCcHHHHHHHHh
Q 039421 44 HFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQ 77 (112)
Q Consensus 44 ~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~ 77 (112)
|+|++++++ +..|| ..+.+.+||++
T Consensus 26 H~p~~i~~~-----~l~v~----~d~~l~~~L~~ 50 (87)
T PF05194_consen 26 HWPLFIEED-----ELYVP----YDHVLEELLRK 50 (87)
T ss_dssp T--EEEETT-----EEEEE------HHHHHHHHH
T ss_pred ccceEEcCC-----EEEec----CcHHHHHHHHH
Confidence 789999985 88888 55666777776
No 36
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=23.21 E-value=92 Score=23.64 Aligned_cols=34 Identities=32% Similarity=0.641 Sum_probs=27.0
Q ss_pred CeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCc
Q 039421 43 GHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFD 85 (112)
Q Consensus 43 G~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 85 (112)
|+++++||-. |... .+-|...+|++...++++.+
T Consensus 1 g~lvlFiGAG--------~S~~-~glP~W~~Ll~~l~~~~~~~ 34 (242)
T cd01406 1 GRVVIFVGAG--------VSVS-SGLPDWKTLLDEIASELGLE 34 (242)
T ss_pred CCEEEEecCc--------cccc-cCCCChHHHHHHHHHHcCCc
Confidence 7889999984 1111 57899999999999999876
No 37
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=23.20 E-value=42 Score=17.24 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.4
Q ss_pred ccCCCCCCCCeEEE
Q 039421 34 TSTASDVPKGHFAI 47 (112)
Q Consensus 34 ~~~~~~vpkG~~~V 47 (112)
...+..-|||.|||
T Consensus 5 ptlp~~kpkgtfpv 18 (20)
T PF06344_consen 5 PTLPVAKPKGTFPV 18 (20)
T ss_pred ccccccccCCcccc
Confidence 34566779999987
No 38
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.29 E-value=4.4e+02 Score=21.56 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=41.6
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhcc
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNY 109 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 109 (112)
.+.+...|.||++. ..-....--.++.|+.|+.. -.+.+| ++.+.|+..+..+++
T Consensus 31 ~~p~Laii~vg~d~-------------as~~Yv~~k~k~~~~~Gi~~--~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 31 HQPGLAVILVGDNP-------------ASQVYVRNKVKACEDNGFHS--LKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCCeEEEEEeCCCc-------------hHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHcC
Confidence 44588999999862 23345667778889999874 357788 888999999988865
No 39
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=21.95 E-value=4.9e+02 Score=22.04 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhcc
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNY 109 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 109 (112)
.+.+...|.||++.. .-....--.++.|++|+.. -.+.+| ++.+++...+..+++
T Consensus 85 ~~P~LaiIlvGddpa-------------S~~Yv~~k~K~a~~~GI~~--~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 85 KVPGLAVVLVGQQRD-------------SQTYVRNKIKACEETGIKS--LLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CCCeEEEEEeCCChH-------------HHHHHHHHHHHHHhcCCEE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 445889999998621 1245566778889999974 356677 778888888888764
No 40
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=21.53 E-value=67 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=11.9
Q ss_pred CCcEEeccc----HHHHHHHHHhh
Q 039421 88 MHGITIPCG----EDEFLNLTSRL 107 (112)
Q Consensus 88 ~G~L~IPC~----~~~Fe~vl~~l 107 (112)
.-.|+|||+ .+-|+.||+-+
T Consensus 12 ~q~lrv~ce~p~~~d~~q~LlsGv 35 (96)
T PF15387_consen 12 PQRLRVPCEAPGDADPFQGLLSGV 35 (96)
T ss_pred cceEEEeeecCCCcccHHHHHHHH
Confidence 345777776 35666666543
No 41
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=21.17 E-value=1.2e+02 Score=22.09 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHH-----HhcCCc--cCCCcEE-ecccHHHHHHHHHhh
Q 039421 42 KGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAE-----EEFGFD--YRMHGIT-IPCGEDEFLNLTSRL 107 (112)
Q Consensus 42 kG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~ae-----EEfG~~--~~~G~L~-IPC~~~~Fe~vl~~l 107 (112)
++-|-||||++ +-|++-..|-+-|.|.-=+..-. ---|.. -..|.++ |.-..++|.+|+..+
T Consensus 32 ~~~~fVyvG~~----rdYIl~~gfCSCp~~~~svvl~Gk~~C~Hi~glk~A~~~gk~~~I~~y~~d~~~Il~e~ 101 (117)
T COG5431 32 KVKFFVYVGKE----RDYILEGGFCSCPDFLGSVVLKGKSPCAHIIGLKVAKITGKYDYIDAYYVDYPDILREK 101 (117)
T ss_pred eEEEEEEEccc----cceEEEcCcccCHHHHhHhhhcCcccchhhhheeeeeecCcEEEEEEecccHHHHHHHH
Confidence 44589999995 67999999999999873222110 000110 0123333 666677777777654
No 42
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=21.09 E-value=29 Score=29.53 Aligned_cols=23 Identities=43% Similarity=0.740 Sum_probs=17.7
Q ss_pred CCCCCCeEEEEEccCCCcce-EEEEe
Q 039421 38 SDVPKGHFAIYVGQEDKKKK-RFVVP 62 (112)
Q Consensus 38 ~~vpkG~~~VyVG~~~~~~~-RfvVp 62 (112)
.-||.|-|++|||-+. -+ .|.||
T Consensus 88 i~iPh~sf~~y~g~~~--ie~~~~vp 111 (366)
T PRK13277 88 IFVPNRSFAVYVGYDA--IENEFKVP 111 (366)
T ss_pred EEecCCCeEEEecHHH--HhhcCCCC
Confidence 4489999999999752 23 58888
No 43
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.06 E-value=4.9e+02 Score=21.27 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhcc
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNY 109 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 109 (112)
+..+...|.||++. ..-.....-.++.+++|+.. -.+.+| ++.++|...+..+++
T Consensus 29 ~~P~Laii~vg~d~-------------as~~Yv~~k~k~a~~~Gi~~--~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 29 IESCLAVILVGDNP-------------ASQTYVKSKAKACEECGIKS--LVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CCceEEEEEeCCCH-------------HHHHHHHHHHHHHHHcCCEE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44588899999852 12345566778888999974 457787 888889998888864
Done!