Query 039421
Match_columns 112
No_of_seqs 116 out of 637
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 66.3 12 0.00041 23.4 4.9 60 45-110 11-73 (109)
2 1s1g_A Potassium voltage-gated 60.9 5.7 0.00019 27.3 2.6 65 40-111 10-75 (124)
3 2nz0_B Potassium voltage-gated 60.6 9 0.00031 26.9 3.7 65 40-111 32-97 (140)
4 3drz_A BTB/POZ domain-containi 57.4 27 0.00093 22.8 5.5 63 42-111 5-72 (107)
5 1und_A Advillin, P92; actin bi 53.4 4.9 0.00017 22.7 1.0 20 64-83 1-20 (37)
6 1y74_B MLIN-2/CASK, peripheral 50.8 5.9 0.0002 22.9 1.2 20 64-83 26-49 (50)
7 2al3_A TUG long isoform; TUG U 50.3 19 0.00065 23.9 3.7 42 46-92 12-53 (90)
8 2vpk_A Myoneurin; transcriptio 46.8 28 0.00095 22.1 4.1 53 45-110 25-82 (116)
9 1nn7_A Potassium channel KV4.2 45.6 4.3 0.00015 27.0 -0.0 60 45-111 2-62 (105)
10 2bkf_A Zinc-finger protein NBR 43.8 55 0.0019 21.6 5.2 54 56-111 17-78 (87)
11 2xko_C PIPX, global nitrogen r 40.2 3.4 0.00012 27.8 -1.2 11 64-74 5-15 (89)
12 1r29_A B-cell lymphoma 6 prote 38.0 40 0.0014 21.6 3.9 56 45-110 32-91 (127)
13 3pmi_A PWWP domain-containing 34.9 12 0.00041 26.8 0.9 30 54-83 46-78 (134)
14 2ccq_A P97, peptide N-glycanas 34.0 37 0.0013 22.4 3.2 44 65-108 45-96 (99)
15 2if5_A Zinc finger and BTB dom 33.4 72 0.0025 20.1 4.5 57 45-110 28-87 (120)
16 3ga1_A Nucleus accumbens-assoc 32.9 66 0.0023 20.7 4.3 53 45-110 36-92 (129)
17 1yu8_X Villin; alpha helix, 3- 29.7 18 0.00061 22.8 1.0 20 64-83 31-50 (67)
18 3n5b_B ASR0485 protein; PII, P 28.1 7.2 0.00025 27.2 -1.2 27 37-74 12-38 (112)
19 1pzq_A Erythronolide synthase; 28.0 30 0.001 21.1 1.8 18 8-25 33-50 (60)
20 1qzp_A Dematin; villin headpie 26.5 16 0.00053 23.0 0.3 20 64-83 32-51 (68)
21 1ujs_A Actin-binding LIM prote 25.2 22 0.00076 23.6 0.8 20 64-83 46-65 (88)
22 3drx_A BTB/POZ domain-containi 24.8 85 0.0029 23.4 4.1 65 40-111 9-78 (202)
23 2k6m_S Supervillin; SVHP, HP, 24.6 19 0.00066 22.6 0.4 20 64-83 31-50 (67)
24 1w8x_N Protein P31, protein C, 22.8 19 0.00066 25.1 0.2 29 40-72 85-123 (126)
25 1z3x_A Putative cytidyltransfe 22.8 3.6 0.00012 31.9 -3.9 31 37-72 207-237 (238)
26 3b84_A Zinc finger and BTB dom 22.1 1.2E+02 0.0042 19.1 4.1 53 45-110 27-82 (119)
27 3qli_A Coenzyme A transferase; 21.8 49 0.0017 27.6 2.4 47 37-84 401-454 (455)
28 1buo_A POZ domain, protein (pr 21.4 1.4E+02 0.0048 18.9 4.2 52 45-110 31-85 (121)
29 1y6i_A Mg-chelatase cofactor G 21.1 7.5 0.00026 30.0 -2.5 31 37-72 199-229 (233)
30 3kvt_A Potassium channel prote 20.8 20 0.00069 24.1 -0.1 61 43-111 5-68 (115)
31 2d5u_A N-glycanase 1; pngase, 20.7 68 0.0023 22.1 2.7 43 65-107 60-110 (124)
32 1vd2_A Protein kinase C, IOTA 20.6 1.5E+02 0.0052 19.2 4.3 38 43-85 5-42 (89)
33 3ohu_A Transcription regulator 20.2 1E+02 0.0035 19.6 3.3 55 45-110 35-93 (125)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=66.34 E-value=12 Score=23.41 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=41.6
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEec-ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITIP-CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||++ ++.++|-+.-..| ..|.|++++...-.| . . ..|.|| .+.+.|+.++..+=.|
T Consensus 11 v~l~v~~~-~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e---~-~-~~i~l~~~~~~~f~~~l~~iYt~ 73 (109)
T 2vkp_A 11 VHFVVGPP-GATRTVPAHKYVLAVGSSVFYAMFYGDLAE---V-K-SEIHIPDVEPAAFLILLKYMYSD 73 (109)
T ss_dssp EEEEESST-TSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCC-CCcEEEEeeHHHHHHcCHHHHHHhcCCccc---C-C-CeEEeCCCCHHHHHHHHHHHcCC
Confidence 45667762 3367898888887 689999999764333 1 2 578887 6899999999877554
No 2
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=60.87 E-value=5.7 Score=27.32 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcC-cHHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLK-HPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
.....+.+-||. +||.+..+-|. +|. .+|..++...-++..+|.+-|-.+-..|++||..+..|.
T Consensus 10 ~~~~~V~LNVGG-----~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 10 RQDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp --CCEEEEEETT-----EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEEeCC-----EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 355688899997 49999987764 332 234444444344445799999999999999999998774
No 3
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=60.55 E-value=9 Score=26.92 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCc-CcHHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYL-KHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
.....+.+-||. +||.+..+-| ++|. .+|..++...-++..+|.+-|-.+-..|++||..+..|.
T Consensus 32 ~~~~~V~LNVGG-----~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 32 RQDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp TCCCEEEEEETT-----EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEECC-----EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 456789999997 4999988766 3342 244444444445445799999999999999999998774
No 4
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=57.43 E-value=27 Score=22.77 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCeEEEEEccCCCcceEEEEeccCcC-cH--HHHHHHHhHHHhcC--CccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 42 KGHFAIYVGQEDKKKKRFVVPISYLK-HP--LFQALLSQAEEEFG--FDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 42 kG~~~VyVG~~~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
...+.+-||. ++|.+..+-|. +| .|..|.... .++. .+ .+|.+-|-++...|++||..+..|.
T Consensus 5 ~~~v~LNVGG-----~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d-~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVGG-----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKD-ETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEETT-----EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBC-TTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEECC-----EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCC-CCceEEecCChHHHHHHHHHhCCCe
Confidence 3567888987 49999987775 34 566665422 1232 23 4688999999999999999988764
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=53.35 E-value=4.9 Score=22.71 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.4
Q ss_pred cCcCcHHHHHHHHhHHHhcC
Q 039421 64 SYLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~aeEEfG 83 (112)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999873
No 6
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=50.82 E-value=5.9 Score=22.94 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=15.4
Q ss_pred cCcCcHHHHHHHHh----HHHhcC
Q 039421 64 SYLKHPLFQALLSQ----AEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~----aeEEfG 83 (112)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57889999999974 556664
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=50.27 E-value=19 Score=23.95 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=30.3
Q ss_pred EEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCccCCCcEE
Q 039421 46 AIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGIT 92 (112)
Q Consensus 46 ~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~ 92 (112)
.+++... .+|+.|++. ..-.+.++|++|=+.||++.++..|.
T Consensus 12 v~Vl~~n---~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 12 VSVLAPN---GRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp EEEECTT---SCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred EEEEcCC---CcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 3444443 689999983 34468899999999999986555554
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=46.79 E-value=28 Score=22.07 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=39.2
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEec---ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITIP---CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP---C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.-..| ..|.|++++... . +..+.|+ .+.+.|+.++..+=.|
T Consensus 25 v~l~v~~-----~~~~aHk~vLaa~S~yF~~~f~~~------~--~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 25 CTIVIGE-----FQFKAHRNVLASFSEYFGAIYRST------S--ENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTTC------C--CSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred EEEEECC-----EEEeccHHHHhhcCHHHHHHHcCC------C--CCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 4566665 4787777776 579999998764 1 3678888 7899999999877544
No 9
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=45.60 E-value=4.3 Score=26.98 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=40.3
Q ss_pred EEEEEccCCCcceEEEEeccCc-CcHHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL-KHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
+.+-||. +||.+..+-| ++|. .+|..++...-++..+|.+-|-.+...|++||..+..|.
T Consensus 2 V~LNVGG-----~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~ 62 (105)
T 1nn7_A 2 IVLNVSG-----TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT-----EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC-----EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCC
Confidence 4566776 4898887665 3332 123333333334434689999999999999999998774
No 10
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=43.83 E-value=55 Score=21.63 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=39.4
Q ss_pred ceEEEEeccCcCcHHHHHHHHhHHHhcCC--------ccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 56 KKRFVVPISYLKHPLFQALLSQAEEEFGF--------DYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 56 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~--------~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
.+||. ++++..|.+.+|-.+-..-||+ +.++-.|+|.-+.+..|-+--..++||
T Consensus 17 ~~rf~--vs~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k~~n 78 (87)
T 2bkf_A 17 IQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGN 78 (87)
T ss_dssp EEEEE--ESCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHHHHHHHHTTT
T ss_pred eeEEE--eccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHHHHHhccCCC
Confidence 57775 5789999999999999999995 333556888887766666554444454
No 11
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=40.17 E-value=3.4 Score=27.80 Aligned_cols=11 Identities=55% Similarity=1.047 Sum_probs=8.6
Q ss_pred cCcCcHHHHHH
Q 039421 64 SYLKHPLFQAL 74 (112)
Q Consensus 64 ~~L~hP~F~~L 74 (112)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 49999998644
No 12
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=37.97 E-value=40 Score=21.64 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=41.4
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEe-c-ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITI-P-CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ....|.| + .+.+.|+.++..+=.|
T Consensus 32 v~l~v~~-----~~~~aHk~iLaa~S~~F~~~f~~~~~e-----~~~~i~l~~~~~~~~f~~ll~~~Ytg 91 (127)
T 1r29_A 32 VVIVVSR-----EQFRAHKTVLMACSGLFYSIFTDQLKR-----NLSVINLDPEINPEGFNILLDFMYTS 91 (127)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTSTTTT-----TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred EEEEECC-----EEEehHHHHHHHhCHHHHHHhcCCccC-----CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence 4566664 4787777777 689999999876544 2478999 4 6889999999877544
No 13
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=34.93 E-value=12 Score=26.77 Aligned_cols=30 Identities=47% Similarity=0.555 Sum_probs=25.9
Q ss_pred CcceEEEEeccCcCcH---HHHHHHHhHHHhcC
Q 039421 54 KKKKRFVVPISYLKHP---LFQALLSQAEEEFG 83 (112)
Q Consensus 54 ~~~~RfvVp~~~L~hP---~F~~LL~~aeEEfG 83 (112)
.+++=|.||+.-|+|= .-++|+++|.|.|+
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 3478899999998885 48999999999988
No 14
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=34.01 E-value=37 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred CcCcHHHHHHHHhHH------HhcCCccCCCcEEec--ccHHHHHHHHHhhc
Q 039421 65 YLKHPLFQALLSQAE------EEFGFDYRMHGITIP--CGEDEFLNLTSRLN 108 (112)
Q Consensus 65 ~L~hP~F~~LL~~ae------EEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~ 108 (112)
-+++|.|++-+...+ +..||...++.|++| +++...+.+...|.
T Consensus 45 r~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 45 RIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp ETTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 378899998665432 346999777889998 66777777666554
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=33.41 E-value=72 Score=20.08 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=39.0
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEec-ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITIP-CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.-..| ..|.|++++...-.| . ....|.|+ .+.+.|+.++..+=.|
T Consensus 28 v~l~v~~-----~~~~aHk~vLaa~S~~F~~~f~~~~~e---~-~~~~i~l~~~~~~~f~~ll~~~Yt~ 87 (120)
T 2if5_A 28 VVILVEG-----REFPTHRSVLAACSQYFKKLFTSGAVV---D-QQNVYEIDFVSAEALTALMDFAYTA 87 (120)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHC---------CCSEEECCSSCHHHHHHHHHHHHHS
T ss_pred eEEEECC-----EEEeHHHHHHHHhCHHHHHHhcCCccc---c-CCceEEeCCCCHHHHHHHHHHHcCC
Confidence 4566664 4787777777 479999999864333 2 24678998 5889999999877544
No 16
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=32.90 E-value=66 Score=20.73 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=39.1
Q ss_pred EEEEEccCCCcceEEEEeccCcC--cHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYLK--HPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.=..|. .|.|++++... ....|.|| .+.+.|+.++..+=.|
T Consensus 36 v~l~v~~-----~~~~~Hk~vLaa~S~~F~~~f~~~--------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 36 VSVVVKG-----HAFKAHRAVLAASSSYFRDLFNNS--------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEEETT-----EEEEECHHHHHHHBHHHHHHHHHC--------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred eEEEECC-----EEEEehHHHHHHcCHHHHHHHcCC--------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 4666764 47777665554 68999998765 24689996 8999999999876443
No 17
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=29.72 E-value=18 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.4
Q ss_pred cCcCcHHHHHHHHhHHHhcC
Q 039421 64 SYLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~aeEEfG 83 (112)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 18
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=28.13 E-value=7.2 Score=27.18 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=9.3
Q ss_pred CCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHH
Q 039421 37 ASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQAL 74 (112)
Q Consensus 37 ~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~L 74 (112)
+.-||+|..---+..| .|||||.|.-|
T Consensus 12 ~~~~~~~~~~~~ms~E-----------~YLNHPTFGLL 38 (112)
T 3n5b_B 12 SGLVPRGSHMNPENSE-----------TYINHPTWGLL 38 (112)
T ss_dssp --------------CC-----------CEEEETTTEEE
T ss_pred CCcccCCccCCCcchh-----------hhccCCccchh
Confidence 4557777654333332 39999998654
No 19
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=28.05 E-value=30 Score=21.06 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhcccc
Q 039421 8 MVLHAKQIIRRRLSSNNK 25 (112)
Q Consensus 8 ~~~~~k~~l~r~~s~~~~ 25 (112)
.-+++..+||||+|....
T Consensus 33 vgqrlesllrrwnsrrad 50 (60)
T 1pzq_A 33 VGQRLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 345788899999987533
No 20
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=26.49 E-value=16 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.472 Sum_probs=18.3
Q ss_pred cCcCcHHHHHHHHhHHHhcC
Q 039421 64 SYLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~aeEEfG 83 (112)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 21
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=25.17 E-value=22 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=18.6
Q ss_pred cCcCcHHHHHHHHhHHHhcC
Q 039421 64 SYLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~aeEEfG 83 (112)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 22
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=24.82 E-value=85 Score=23.41 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=46.4
Q ss_pred CCCCeEEEEEccCCCcceEEEEeccCcC-cH--HHHHHHHhHHHhcC--CccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 40 VPKGHFAIYVGQEDKKKKRFVVPISYLK-HP--LFQALLSQAEEEFG--FDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
-+...+.+-||. +||.+..+-|. +| .|..|.... .++. .+ .+|.+-|-.+...|++||..+..|.
T Consensus 9 ~~~~~V~LNVGG-----~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~D-e~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 9 SVSKWVRLNVGG-----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKD-ETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCCCEEEEEETT-----EEEEEETTGGGSCTTSSTHHHHSCC-CC----BC-TTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCCCEEEEEECC-----EEEEEeHHHHhCCCcchHHHHhcCc-cccCcccC-CCccEEecCChHHHHHHHHHhcCCc
Confidence 345678899997 49999988775 34 466664321 1232 23 3688999999999999999988774
No 23
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=24.56 E-value=19 Score=22.59 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.6
Q ss_pred cCcCcHHHHHHHHhHHHhcC
Q 039421 64 SYLKHPLFQALLSQAEEEFG 83 (112)
Q Consensus 64 ~~L~hP~F~~LL~~aeEEfG 83 (112)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999985
No 24
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=22.83 E-value=19 Score=25.12 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=17.9
Q ss_pred CCCCeEEEEEccCCCcceEEE----------EeccCcCcHHHH
Q 039421 40 VPKGHFAIYVGQEDKKKKRFV----------VPISYLKHPLFQ 72 (112)
Q Consensus 40 vpkG~~~VyVG~~~~~~~Rfv----------Vp~~~L~hP~F~ 72 (112)
=..||+||.|-. +-+|+ ||+-+||.|+-+
T Consensus 85 G~QGYfPlL~~~----~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVPG----RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEECC----SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeeccc----hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 367999999955 34455 688899988644
No 25
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=22.80 E-value=3.6 Score=31.93 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=20.4
Q ss_pred CCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHH
Q 039421 37 ASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQ 72 (112)
Q Consensus 37 ~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~ 72 (112)
....|+||+|+.-. -+=..|=.+.|+||.|.
T Consensus 207 sl~AP~GHLP~~~~-----lrGv~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ-----LRGVQVLNALLNHPAWT 237 (238)
T ss_dssp STTSCTTCCSCCCC-----TTCSHHHHHHHTCGGGG
T ss_pred eCCCCCCCCCcCcc-----cccHHHHHHHHcCcccc
Confidence 34689999998542 22233456788888763
No 26
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=22.05 E-value=1.2e+02 Score=19.13 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=37.8
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEec-ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITIP-CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.=..| ..|.|++++... . .+.|.|| .+.+.|+.++..+=.|
T Consensus 27 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~~-----~---~~~i~l~~~~~~~f~~ll~~iYtg 82 (119)
T 3b84_A 27 ATLDVGG-----LVFKAHWSVLACCSHFFQSLYGDG-----S---GGSVVLPAGFAEIFGLLLDFFYTG 82 (119)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTTT-----T---CCCEEECGGGHHHHHHHHHHHHHS
T ss_pred eEEEECC-----EEEEeeHHHHhhcCHHHHHHHCCC-----C---CCeEEeCCCCHHHHHHHHHHHcCC
Confidence 3456665 4777776666 478999998752 1 3679998 5688999999877544
No 27
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=21.76 E-value=49 Score=27.55 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEEccCC-------CcceEEEEeccCcCcHHHHHHHHhHHHhcCC
Q 039421 37 ASDVPKGHFAIYVGQED-------KKKKRFVVPISYLKHPLFQALLSQAEEEFGF 84 (112)
Q Consensus 37 ~~~vpkG~~~VyVG~~~-------~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 84 (112)
+...|++++-+.|-|-+ .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 34568888777774421 11344433344 8999999999988887664
No 28
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=21.36 E-value=1.4e+02 Score=18.86 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=37.3
Q ss_pred EEEEEccCCCcceEEEEeccCc--CcHHHHHHHHhHHHhcCCccCCCcEEec-ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYL--KHPLFQALLSQAEEEFGFDYRMHGITIP-CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.-..| ..|.|++++.. +...|.|+ .+.+.|+.++..+=.|
T Consensus 31 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~---------~~~~i~l~~~~~~~f~~ll~~~Ytg 85 (121)
T 1buo_A 31 VVIMVDS-----QEFHAHRTVLACTSKMFEILFHR---------NSQHYTLDFLSPKTFQQILEYAYTA 85 (121)
T ss_dssp EEEEESS-----CEEEECHHHHHHHCHHHHHHTTS---------CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred EEEEECC-----EEEehhHHHHhhcCHHHHHHHcC---------CCcEEEeCCCCHHHHHHHHHhhcCC
Confidence 4556665 3777766666 67899998863 13578888 7889999999876544
No 29
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=21.05 E-value=7.5 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=20.9
Q ss_pred CCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHH
Q 039421 37 ASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQ 72 (112)
Q Consensus 37 ~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~ 72 (112)
....|+||+|+.-.-. =.-|=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lr-----G~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLR-----GVRVAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTT-----CTHHHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccc-----hHHHHHHHHCCcccc
Confidence 3468999999864321 112556789999884
No 30
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=20.80 E-value=20 Score=24.12 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=41.9
Q ss_pred CeEEEEEccCCCcceEEEEeccCcC-cH--HHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhhccCC
Q 039421 43 GHFAIYVGQEDKKKKRFVVPISYLK-HP--LFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111 (112)
Q Consensus 43 G~~~VyVG~~~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~~~ 111 (112)
..+.+-||. +||.+..+-|. +| .+..|.. ....++...|.+-|--+...|.+||..+..|.
T Consensus 5 ~~V~LNVGG-----~~f~T~~~TL~~~P~s~L~~l~~---~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~ 68 (115)
T 3kvt_A 5 NRVIINVGG-----IRHETYKATLKKIPATRLSRLTE---GMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK 68 (115)
T ss_dssp CEEEEEETT-----EEEEEEHHHHTTSCSSTTTTCCT---TSTTEETTTTEEEECSCTTTHHHHHHHHHHSC
T ss_pred CEEEEEECC-----EEEEecHHHHhcCCCccHHHHhc---CCCCCCCCCCcEEEecChHHHHHHHHHhcCCC
Confidence 467888987 49999876654 23 2333322 12234445788999999999999999988764
No 31
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=20.74 E-value=68 Score=22.07 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=30.3
Q ss_pred CcCcHHHHHHHHhHH------HhcCCccCCCcEEec--ccHHHHHHHHHhh
Q 039421 65 YLKHPLFQALLSQAE------EEFGFDYRMHGITIP--CGEDEFLNLTSRL 107 (112)
Q Consensus 65 ~L~hP~F~~LL~~ae------EEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 107 (112)
-+++|.|++-+...+ +..||...++.|++| .++...+.+...|
T Consensus 60 Rl~N~~f~~~V~~~~Ga~e~L~a~GF~~~~~~lvlp~~~~~~~l~~~~d~L 110 (124)
T 2d5u_A 60 RIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLI 110 (124)
T ss_dssp ECCCHHHHHTTSSSTTHHHHHHHHTCBCCSSEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCHHHHHHhcCCccHHHHHHHcccccCCCeeecCCCCCHHHHHHHHHHH
Confidence 378999998654332 356999777889999 5666777666554
No 32
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=20.64 E-value=1.5e+02 Score=19.18 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=27.0
Q ss_pred CeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCCc
Q 039421 43 GHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFD 85 (112)
Q Consensus 43 G~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 85 (112)
|.+.|-+-=. ++-.|+.||. ...|++|.++-.+-|++.
T Consensus 5 ~~vkvK~~~~-gdi~~~~v~~----~i~~~~L~~kv~~~~~~~ 42 (89)
T 1vd2_A 5 SQVRVKAYYR-GDIMITHFEP----SISFEGLCNEVRDMCSFD 42 (89)
T ss_dssp SCEEEEEESS-SCEEEEEECT----TCCHHHHHHHHHHHTTCC
T ss_pred CeEEEEEEeC-CeEEEEECCC----CCCHHHHHHHHHHHhCCC
Confidence 3455544321 1278898987 458999999999999985
No 33
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=20.19 E-value=1e+02 Score=19.57 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=38.9
Q ss_pred EEEEEccCCCcceEEEEeccCcC--cHHHHHHHHhHHHhcCCccCCCcEEec--ccHHHHHHHHHhhccC
Q 039421 45 FAIYVGQEDKKKKRFVVPISYLK--HPLFQALLSQAEEEFGFDYRMHGITIP--CGEDEFLNLTSRLNYG 110 (112)
Q Consensus 45 ~~VyVG~~~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~~ 110 (112)
+.+.||+ ++|-+.-..|. .|.|++++.....| ...|.|| .+.+.|+.++..+=.|
T Consensus 35 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~~~~e------~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 35 VTLIVER-----KEFRAHRAVLAACSEYFWQALVGQTKN------DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEETT-----EEEEECHHHHHHHBHHHHHHHTTCCCS------SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred eEEEECC-----EEEechHHHHHHcCHHHHHHhcCCCCC------CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 4566765 46777666664 68899998764332 3568887 7999999999877544
Done!