BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039424
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFD0|CN37_PONAB 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Pongo abelii GN=CNP
PE=2 SV=1
Length = 421
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
++G PG+GKSTLA I D RD T + K TP A A S
Sbjct: 55 LRGLPGSGKSTLARVIV----------DKYRDGTKMVSADAYKITP------GARGAFSE 98
Query: 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDE 120
L D+ +++ +V+D R LE+L ++A + + +V+VE K +
Sbjct: 99 EYKRLDEDLAAYCRRRDIRI---LVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTA-- 153
Query: 121 AEWR 124
WR
Sbjct: 154 --WR 155
>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Homo sapiens GN=CNP
PE=1 SV=2
Length = 421
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
++G PG+GKSTLA I D RD T + K TP A A S
Sbjct: 55 LRGLPGSGKSTLARVIV----------DKYRDGTKMVSADAYKITP------GARGAFSE 98
Query: 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDE 120
L D+ +++ +V+D R LE+L ++A + + +V+VE K +
Sbjct: 99 EYKRLDEDLAAYCRRRDIRI---LVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTA-- 153
Query: 121 AEWR 124
WR
Sbjct: 154 --WR 155
>sp|A4XBM5|KAD_SALTO Adenylate kinase OS=Salinispora tropica (strain ATCC BAA-916 / DSM
44818 / CNB-440) GN=adk PE=3 SV=1
Length = 217
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
+ G PG GK T A+ +A+ L +P I D+ + + + TP A A
Sbjct: 5 LVGPPGAGKGTQAEFVAAHLAVPKISTGDI------FRSNVSQGTPLGVQAKRYMDAGEL 58
Query: 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDE 120
+ ++++ +++ + + G ++D L KL ++ L +V D+
Sbjct: 59 VPDEVTINMV-RDRLAEPDAGEGFLLDGFPRTTPQAAALDKLLVDLGTALDLVLELVVDD 117
Query: 121 AEWRRRLEGRGNEGGCGVVGDDRPSSWH 148
E RRL GR GCG V WH
Sbjct: 118 DEVIRRLSGRRTCRGCGKV-------WH 138
>sp|A4WKL0|KCY_PYRAR Cytidylate kinase OS=Pyrobaculum arsenaticum (strain DSM 13514 /
JCM 11321) GN=cmk PE=3 SV=1
Length = 184
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLI 25
+ G PG+GK+T+A IA LK+PL+
Sbjct: 6 VSGQPGSGKTTIAREIARVLKVPLV 30
>sp|A5FML2|RSGA_FLAJ1 Putative ribosome biogenesis GTPase RsgA OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=rsgA PE=3 SV=1
Length = 325
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 36/161 (22%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
GH G GKSTL +A+ +L + + + + QH T+ A
Sbjct: 181 FSGHSGVGKSTLVNAMEPSLHLK--------------TSVISEQSKQGQHTTTFAE---- 222
Query: 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKP--- 117
+ DLS+D +I T G +V P + + KL + + + + +P
Sbjct: 223 -MYDLSFDA--RIIDTPGIKGFGIVDMEPTEISGYFPEFFKLKDQCKFNNCLHKEEPHCA 279
Query: 118 ------SDEAEWRRR------LEGRGNEGGCGVVGDDRPSS 146
DE W R LEG + G+DR +S
Sbjct: 280 IKAALEKDEIAWSRYNSYLKILEGDEEHYRTDIYGEDRAAS 320
>sp|A8M508|KAD_SALAI Adenylate kinase OS=Salinispora arenicola (strain CNS-205) GN=adk
PE=3 SV=1
Length = 217
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
+ G PG GK T A+ +A+ L +P I D+ + + + TP A A
Sbjct: 5 LVGPPGAGKGTQAEFVAAHLAVPKISTGDI------FRSNVSQGTPLGVQAKRYMDAGEL 58
Query: 61 LLNDLSYDVIW-KIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSD 119
+ ++++ +++ ++A G ++D L KL ++ L +V D
Sbjct: 59 VPDEVTINMVRDRLAEPDASEG--FLLDGFPRTTPQAAALDKLLVDLGTALDLVLELVVD 116
Query: 120 EAEWRRRLEGRGNEGGCGVVGDDRPSSWH 148
+ E RRL GR GCG V WH
Sbjct: 117 DDEVIRRLSGRRTCRGCGKV-------WH 138
>sp|P0A5G0|Y2027_MYCBO Uncharacterized protein Mb2027c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2027c PE=4 SV=1
Length = 498
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDVR 31
G+PGTGKSTLA +A + +I DDVR
Sbjct: 329 GNPGTGKSTLARGVAELVGAQVISTDDVR 357
>sp|P0A5F9|Y2004_MYCTU Uncharacterized protein Rv2004c/MT2060 OS=Mycobacterium
tuberculosis GN=Rv2004c PE=1 SV=1
Length = 498
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDVR 31
G+PGTGKSTLA +A + +I DDVR
Sbjct: 329 GNPGTGKSTLARGVAELVGAQVISTDDVR 357
>sp|Q6L0P4|RFCL_PICTO Replication factor C large subunit OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=rfcL PE=3 SV=1
Length = 410
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLID 26
+ G PGTGK+T A IA+ L +PLI+
Sbjct: 44 LYGDPGTGKTTTATVIANYLNVPLIE 69
>sp|Q7UU71|AROK_RHOBA Shikimate kinase OS=Rhodopirellula baltica (strain SH1) GN=aroK
PE=3 SV=1
Length = 187
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCT 34
+ G+ G GKSTLA +A L +P +D DDV + T
Sbjct: 13 LTGYRGCGKSTLAKLLAQKLSLPSVDLDDVIETT 46
>sp|B1YAJ8|KCY_PYRNV Cytidylate kinase OS=Pyrobaculum neutrophilum (strain DSM 2338 /
JCM 9278 / V24Sta) GN=cmk PE=3 SV=1
Length = 184
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLI 25
+ G PG+GK+T+A +A LK+PL+
Sbjct: 6 VSGQPGSGKTTIAREVARVLKVPLV 30
>sp|B5FJD6|ASTD_SALDC N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
dublin (strain CT_02021853) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMVSL-ESPELTLPATLSPGL 484
>sp|Q5SCY7|YCF1_HUPLU Putative membrane protein ycf1 OS=Huperzia lucidula GN=ycf1 PE=3
SV=2
Length = 1658
Score = 33.5 bits (75), Expect = 0.91, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
Query: 18 SALKIPL--IDKDDVRDCTLSLQQTLQKTTPHHQHATSAA--AAASSLLNDLSYDVIWKI 73
+ LKIPL +K D + + Q P + AA + L+ L+ W
Sbjct: 694 TPLKIPLKVSNKIDTKSTFTPFTKIKQGLIPFFSDSDDEKVFAAEKTELDRLTIANKWDF 753
Query: 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133
AS G +V+ S L + + L+ R L V D EW + + + N
Sbjct: 754 ASAHWGRGFPLVIQSYLRKYVVIPVLIISKNISRILLFQVPEWKEDWNEWSKEIHVKCNY 813
Query: 134 GGCGVVGDDRPSSWHK 149
G V PS WH+
Sbjct: 814 DGTEVSVHQLPSLWHR 829
>sp|Q8ZPV0|ASTD_SALTY N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=astD PE=2 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B5BA70|ASTD_SALPK N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
paratyphi A (strain AKU_12601) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|A9N276|ASTD_SALPB N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=astD PE=3
SV=1
Length = 492
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|Q5PHC0|ASTD_SALPA N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=astD PE=3
SV=1
Length = 492
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|Q7N158|COAE_PHOLL Dephospho-CoA kinase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=coaE PE=3 SV=1
Length = 207
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV-RDCTLSLQQTLQKTTPHHQH 50
+ G G+GK+T+A+A A AL +PL+D D + R+ + LQ T H H
Sbjct: 7 LTGGIGSGKTTIANAFA-ALGVPLVDADIIAREIVVPGTPALQAITEHFGH 56
>sp|C0Q6X8|ASTD_SALPC N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
paratyphi C (strain RKS4594) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B4TGE2|ASTD_SALHS N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
heidelberg (strain SL476) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B4TUC3|ASTD_SALSV N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
schwarzengrund (strain CVM19633) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B5RAZ9|ASTD_SALG2 N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=astD PE=3
SV=1
Length = 492
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GIGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B5F7J0|ASTD_SALA4 N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
agona (strain SL483) GN=astD PE=3 SV=1
Length = 492
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|Q8Z6G1|ASTD_SALTI N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
typhi GN=astD PE=3 SV=2
Length = 492
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Bos taurus GN=CNP
PE=2 SV=2
Length = 400
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASS 60
++G PG+GKSTLA I D RD T + K TP A + S
Sbjct: 35 LRGLPGSGKSTLARFIV----------DKYRDGTKMVSADSYKITP------GARGSFSE 78
Query: 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDE 120
L D +A+ + +V+D R LE+L +LA + + +V+VE K +
Sbjct: 79 EYKQLDED----LAACCRRDFRVLVLDDTNHERERLEQLFELADQYQYQVVLVEPKTA-- 132
Query: 121 AEWR 124
WR
Sbjct: 133 --WR 134
>sp|B4T3Z6|ASTD_SALNS N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
newport (strain SL254) GN=astD PE=3 SV=1
Length = 492
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GVGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|B5QWI8|ASTD_SALEP N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella
enteritidis PT4 (strain P125109) GN=astD PE=3 SV=1
Length = 492
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 30/113 (26%)
Query: 92 RRAHLEKLVKLAGEMRAGL--------------VIVECKPSDEAEWRRRLEGRGNE---G 134
R AH ++ ++LA R GL +++E + + W + L G + G
Sbjct: 385 RYAHFDEAIRLANNTRFGLSCGLVSTDRAQFEQLLLEAR-AGIVNWNKPLTGAASTAPFG 443
Query: 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGF 187
G G G+ RPS+W+ YC + + P+LT+ T S G
Sbjct: 444 GIGASGNHRPSAWYAAD-----------YCAWPMASL-ESPELTLPATLSPGL 484
>sp|O27092|PRS2_METTH Putative 26S protease regulatory subunit homolog MTH_1011
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1011 PE=3 SV=1
Length = 372
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 3 GHPGTGKSTLADAIASALKIPL 24
G PGTGK+ LA ++A+ LK+PL
Sbjct: 164 GSPGTGKTMLAKSLANELKVPL 185
>sp|Q64ZU2|AROK_BACFR Shikimate kinase OS=Bacteroides fragilis (strain YCH46) GN=aroK
PE=3 SV=1
Length = 179
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28
+ G+ G GK+TL A+A L IP ID D
Sbjct: 6 LTGYMGAGKTTLGKALARELHIPFIDLD 33
>sp|Q5LIQ7|AROK_BACFN Shikimate kinase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=aroK PE=3 SV=1
Length = 179
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28
+ G+ G GK+TL A+A L IP ID D
Sbjct: 6 LTGYMGAGKTTLGKALARELHIPFIDLD 33
>sp|Q0S0N1|AROK_RHOSR Shikimate kinase OS=Rhodococcus sp. (strain RHA1) GN=aroK PE=3
SV=1
Length = 168
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKD 28
G PG GKST+ +A AL +PL D D
Sbjct: 9 GPPGAGKSTIGRRLAQALDLPLFDTD 34
>sp|Q8A2B2|AROK_BACTN Shikimate kinase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=aroK
PE=1 SV=1
Length = 175
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28
+ G+ G GK+TL A A L +P ID D
Sbjct: 6 LTGYMGAGKTTLGKAFARKLNVPFIDLD 33
>sp|B2GJ13|KAD_KOCRD Adenylate kinase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348
/ NBRC 103217 / DC2201) GN=adk PE=3 SV=1
Length = 188
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL 62
G PG GK T A I+ L +P I D+ + Q L + + A + S+
Sbjct: 8 GPPGAGKGTQAARISERLGVPAISTGDIFRANIKDQTELGREAQRYTDAGN--LVPDSVT 65
Query: 63 NDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAE 122
N++ D +++ + G ++D A +E+L ++ GL +V +D E
Sbjct: 66 NEMVRD---RLSHEDVSGG--FLLDGYPRTVAQVEELDRILEANGVGLDVVLLLTADNDE 120
Query: 123 WRRRLEGRGNEGG 135
RL GR E G
Sbjct: 121 LVSRLLGRAQEQG 133
>sp|B2XTF7|FTSH_HETA2 ATP-dependent zinc metalloprotease FtsH OS=Heterosigma akashiwo
(strain NIES-293) GN=ftsH PE=3 SV=1
Length = 663
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 3 GHPGTGKSTLADAIASALKIPLID 26
G PGTGK+ LA AIA K+P I+
Sbjct: 244 GPPGTGKTLLAKAIAGEAKVPFIN 267
>sp|A3MV67|KCY_PYRCJ Cytidylate kinase OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=cmk PE=3 SV=1
Length = 184
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLI 25
+ G PG+GK+T+A +A LK+P++
Sbjct: 6 ISGQPGSGKTTVAREVARVLKLPMV 30
>sp|A1JNV2|AROL_YERE8 Shikimate kinase 2 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=aroL PE=3 SV=1
Length = 174
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKT 44
M G G GK+T+ A+A AL ID D L +QQTLQ +
Sbjct: 7 MVGARGAGKTTIGKALAQALGYRFIDTD------LFMQQTLQSS 44
>sp|P42811|PRS2_METTM Putative 26S protease regulatory subunit homolog MTBMA_c13930
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=MTBMA_c13930
PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 3 GHPGTGKSTLADAIASALKIPL 24
G PGTGK+ LA ++A+ L++PL
Sbjct: 164 GSPGTGKTMLAKSLANELRVPL 185
>sp|Q05531|NIA_USTMA Nitrate reductase [NADPH] OS=Ustilago maydis (strain 521 / FGSC
9021) GN=NAR1 PE=2 SV=2
Length = 983
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 93 RAHLEKL-VKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151
R LE+L V L G ++ V+ C P +EA W GRG+ V+ P KP+
Sbjct: 888 REELERLRVALKGNLKVWHVLSNCTPENEANWSM---GRGHI-TANVLRTHLPPPPAKPA 943
Query: 152 TWRDLERLLEGYCG 165
+ +LE L CG
Sbjct: 944 SEDELEDTLALVCG 957
>sp|Q89AF2|FTSH_BUCBP ATP-dependent zinc metalloprotease FtsH OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=ftsH PE=3 SV=1
Length = 610
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|A4SEQ7|KAD_PROVI Adenylate kinase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=adk PE=3 SV=1
Length = 218
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL 62
G PG GK T + I+ AL IP I D+ L+ +++ TP + A + + +
Sbjct: 7 GAPGAGKGTQSHFISKALGIPQISTGDM------LRAAVKEETPLGRKAKEVMDSGNLVS 60
Query: 63 NDLSYDVI 70
+D+ D+I
Sbjct: 61 DDIILDII 68
>sp|P57462|FTSH_BUCAI ATP-dependent zinc metalloprotease FtsH OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=ftsH PE=3
SV=2
Length = 611
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|Q8K9G8|FTSH_BUCAP ATP-dependent zinc metalloprotease FtsH OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=ftsH PE=3 SV=1
Length = 613
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|A1TKW2|AROK_ACIAC Shikimate kinase OS=Acidovorax citrulli (strain AAC00-1) GN=aroK
PE=3 SV=1
Length = 183
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDV 30
G PG+GKST+ +A L +P ID D V
Sbjct: 12 GLPGSGKSTVGRHLARRLGLPFIDSDHV 39
>sp|A0LUH0|AROK_ACIC1 Shikimate kinase OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=aroK PE=3 SV=1
Length = 172
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 3 GHPGTGKSTLADAIASALKIPLIDKDDV 30
G PG GKST+ A+AS L + D DDV
Sbjct: 9 GPPGAGKSTVGRALASRLAVSFEDTDDV 36
>sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ftsH PE=3 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|P63344|FTSH_SALTI ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhi GN=ftsH
PE=3 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|P0AAI4|FTSH_SHIFL ATP-dependent zinc metalloprotease FtsH OS=Shigella flexneri
GN=ftsH PE=3 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain
K12) GN=ftsH PE=1 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|Q8X9L0|FTSH_ECO57 ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli O157:H7
GN=ftsH PE=3 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 190 MVGPPGTGKTLLAKAIAGEAKVPF 213
>sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsH PE=3
SV=1
Length = 635
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1 MKGHPGTGKSTLADAIASALKIPL 24
M G PGTGK+ LA AIA K+P
Sbjct: 189 MVGPPGTGKTLLARAIAGEAKVPF 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,213,287
Number of Sequences: 539616
Number of extensions: 3372842
Number of successful extensions: 14574
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 14523
Number of HSP's gapped (non-prelim): 113
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)